BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0289
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607430|ref|NP_214803.1| hypothetical protein Rv0289 [Mycoba... 592 2e-167
gi|289445828|ref|ZP_06435572.1| conserved hypothetical protein [... 584 5e-165
gi|254230663|ref|ZP_04923990.1| conserved hypothetical protein [... 521 7e-146
gi|240172731|ref|ZP_04751390.1| hypothetical protein MkanA1_2567... 485 3e-135
gi|289760400|ref|ZP_06519778.1| conserved hypothetical protein [... 479 3e-133
gi|183980576|ref|YP_001848867.1| hypothetical protein MMAR_0548 ... 470 1e-130
gi|118616925|ref|YP_905257.1| hypothetical protein MUL_1211 [Myc... 464 6e-129
gi|296165971|ref|ZP_06848429.1| DNA-binding protein [Mycobacteri... 457 7e-127
gi|342859227|ref|ZP_08715881.1| hypothetical protein MCOL_10123 ... 453 1e-125
gi|118465963|ref|YP_883987.1| hypothetical protein MAV_4864 [Myc... 453 1e-125
gi|254777304|ref|ZP_05218820.1| hypothetical protein MaviaA2_219... 452 4e-125
gi|41409883|ref|NP_962719.1| hypothetical protein MAP3785 [Mycob... 451 4e-125
gi|254821603|ref|ZP_05226604.1| hypothetical protein MintA_16837... 450 1e-124
gi|336460256|gb|EGO39159.1| hypothetical protein MAPs_42840 [Myc... 449 3e-124
gi|15828362|ref|NP_302625.1| DNA-binding protein [Mycobacterium ... 448 4e-124
gi|333988937|ref|YP_004521551.1| hypothetical protein JDM601_029... 437 1e-120
gi|298523760|ref|ZP_07011169.1| conserved hypothetical protein [... 389 3e-106
gi|169629313|ref|YP_001702962.1| hypothetical protein MAB_2227c ... 332 3e-89
gi|118470815|ref|YP_885033.1| DNA-binding protein [Mycobacterium... 323 2e-86
gi|108797358|ref|YP_637555.1| putative DNA-binding protein [Myco... 323 3e-86
gi|126432979|ref|YP_001068670.1| putative DNA-binding protein [M... 320 1e-85
gi|120401444|ref|YP_951273.1| putative DNA-binding protein [Myco... 316 3e-84
gi|145220926|ref|YP_001131604.1| putative DNA-binding protein [M... 307 1e-81
gi|315442104|ref|YP_004074983.1| hypothetical protein Mspyr1_043... 305 5e-81
gi|317506399|ref|ZP_07964206.1| hypothetical protein HMPREF9336_... 301 1e-79
gi|317506273|ref|ZP_07964089.1| hypothetical protein HMPREF9336_... 201 1e-49
gi|108802526|ref|YP_642722.1| putative DNA-binding protein [Myco... 186 3e-45
gi|296393174|ref|YP_003658058.1| hypothetical protein Srot_0747 ... 182 5e-44
gi|262203518|ref|YP_003274726.1| hypothetical protein Gbro_3645 ... 92.8 6e-17
gi|343927680|ref|ZP_08767148.1| hypothetical protein GOALK_097_0... 87.4 2e-15
gi|315441746|ref|YP_004074625.1| hypothetical protein Mspyr1_005... 79.7 5e-13
gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocar... 79.7 5e-13
gi|240170253|ref|ZP_04748912.1| hypothetical protein MkanA1_1314... 77.0 3e-12
gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_0347... 76.6 4e-12
gi|145221370|ref|YP_001132048.1| hypothetical protein Mflv_0775 ... 76.3 6e-12
gi|120401098|ref|YP_950927.1| hypothetical protein Mvan_0070 [My... 72.4 7e-11
gi|118472873|ref|YP_884475.1| hypothetical protein MSMEG_0057 [M... 68.9 8e-10
gi|108797043|ref|YP_637240.1| hypothetical protein Mmcs_0062 [My... 66.6 5e-09
gi|126432665|ref|YP_001068356.1| hypothetical protein Mjls_0052 ... 66.6 5e-09
gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 ... 66.2 6e-09
gi|317506950|ref|ZP_07964720.1| hypothetical protein HMPREF9336_... 65.9 8e-09
gi|296393779|ref|YP_003658663.1| hypothetical protein Srot_1368 ... 65.1 1e-08
gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881... 62.0 1e-07
gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837... 62.0 1e-07
gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 ... 62.0 1e-07
gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycoba... 61.6 1e-07
gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [... 60.1 4e-07
gi|54022099|ref|YP_116341.1| hypothetical protein nfa1350 [Nocar... 58.2 2e-06
gi|111021019|ref|YP_703991.1| hypothetical protein RHA1_ro04036 ... 57.8 2e-06
gi|312137677|ref|YP_004005013.1| hypothetical protein REQ_01740 ... 57.0 4e-06
>gi|15607430|ref|NP_214803.1| hypothetical protein Rv0289 [Mycobacterium tuberculosis H37Rv]
gi|15839675|ref|NP_334712.1| hypothetical protein MT0302 [Mycobacterium tuberculosis CDC1551]
gi|31791468|ref|NP_853961.1| hypothetical protein Mb0297 [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=295
Score = 592 bits (1526), Expect = 2e-167, Method: Compositional matrix adjust.
Identities = 295/295 (100%), Positives = 295/295 (100%), Gaps = 0/295 (0%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL
Sbjct 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN 120
SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN
Sbjct 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN 120
Query 121 GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG 180
GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG
Sbjct 121 GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG 180
Query 181 VPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV 240
VPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV
Sbjct 181 VPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV 240
Query 241 LVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
LVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS
Sbjct 241 LVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
>gi|289445828|ref|ZP_06435572.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418786|gb|EFD15987.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=294
Score = 584 bits (1506), Expect = 5e-165, Method: Compositional matrix adjust.
Identities = 291/291 (100%), Positives = 291/291 (100%), Gaps = 0/291 (0%)
Query 5 PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 64
PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG
Sbjct 4 PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 63
Query 65 VINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA 124
VINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA
Sbjct 64 VINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA 123
Query 125 LRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
LRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG
Sbjct 124 LRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 183
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSP 244
EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSP
Sbjct 184 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSP 243
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS
Sbjct 244 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 294
>gi|254230663|ref|ZP_04923990.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124599722|gb|EAY58732.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=311
Score = 521 bits (1341), Expect = 7e-146, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL
Sbjct 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN 120
SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN
Sbjct 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN 120
Query 121 GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG 180
GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG
Sbjct 121 GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG 180
Query 181 VPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV 240
VPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV
Sbjct 181 VPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV 240
Query 241 LVSPSRAFDGEWVSTFSPG 259
LVSPSRAFDGEWVSTFSPG
Sbjct 241 LVSPSRAFDGEWVSTFSPG 259
>gi|240172731|ref|ZP_04751390.1| hypothetical protein MkanA1_25677 [Mycobacterium kansasii ATCC
12478]
Length=301
Score = 485 bits (1249), Expect = 3e-135, Method: Compositional matrix adjust.
Identities = 235/293 (81%), Positives = 264/293 (91%), Gaps = 0/293 (0%)
Query 3 ATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSP 62
+ PNAVELTVDNAWFIAE++GAG+FPWVLAIT PY+D+AQR AF DRQ+DELT +GL+SP
Sbjct 9 SQPNAVELTVDNAWFIAESVGAGSFPWVLAITPPYTDSAQRSAFFDRQKDELTGLGLMSP 68
Query 63 QGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGV 122
G +N AVADWIKVVCFPDRWLDLRY+GPASA+G+ ELLRGIVA R G G +++ N V
Sbjct 69 DGTVNSAVADWIKVVCFPDRWLDLRYIGPASAEGSGELLRGIVARRVGAGGKTSRKFNTV 128
Query 123 VALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVP 182
VALR+AQLVTFTAMDIDDPRALVP+LGVGL+ RPPARF+EFS+P RVGARADERLRSG P
Sbjct 129 VALRSAQLVTFTAMDIDDPRALVPVLGVGLSQRPPARFEEFSMPMRVGARADERLRSGAP 188
Query 183 LGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLV 242
L EV+DYLGIP SARPVVE+VFSGPRSYVEIVAGCNRDG+HTTT+VGLSIVDT+AGRVLV
Sbjct 189 LEEVLDYLGIPTSARPVVEAVFSGPRSYVEIVAGCNRDGQHTTTDVGLSIVDTTAGRVLV 248
Query 243 SPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
SPSRAFDGEWVSTFSPGT FA AVAI+ L A LP+GQWFPGQR+SRDFS Q S
Sbjct 249 SPSRAFDGEWVSTFSPGTAFATAVAIEQLIANLPEGQWFPGQRLSRDFSGQPS 301
>gi|289760400|ref|ZP_06519778.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289707906|gb|EFD71922.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=239
Score = 479 bits (1232), Expect = 3e-133, Method: Compositional matrix adjust.
Identities = 239/239 (100%), Positives = 239/239 (100%), Gaps = 0/239 (0%)
Query 57 MGLLSPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSN 116
MGLLSPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSN
Sbjct 1 MGLLSPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSN 60
Query 117 KTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADER 176
KTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADER
Sbjct 61 KTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADER 120
Query 177 LRSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTS 236
LRSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTS
Sbjct 121 LRSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTS 180
Query 237 AGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
AGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS
Sbjct 181 AGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 239
>gi|183980576|ref|YP_001848867.1| hypothetical protein MMAR_0548 [Mycobacterium marinum M]
gi|183173902|gb|ACC39012.1| conserved protein [Mycobacterium marinum M]
Length=298
Score = 470 bits (1209), Expect = 1e-130, Method: Compositional matrix adjust.
Identities = 233/298 (79%), Positives = 257/298 (87%), Gaps = 3/298 (1%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
M++ PNAVELTV+NAWFIAE +GAGTFPWVLAIT PYSD AQR AF RQRDELT++GLL
Sbjct 1 MESMPNAVELTVENAWFIAEMVGAGTFPWVLAITTPYSDEAQRSAFFARQRDELTQLGLL 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTG- 119
S GV+NPAVA+WIKVVCFP+RWLDLRYVGP + +G +LLRGIVA G + K
Sbjct 61 SSDGVVNPAVAEWIKVVCFPERWLDLRYVGPGTGNGGEDLLRGIVAQSAGIMGKAGKAHP 120
Query 120 --NGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
N VVALRNAQLVTFTAMDIDDPRALVP+LGVGL+ RPPARF+EFS+P RVGARADERL
Sbjct 121 SFNTVVALRNAQLVTFTAMDIDDPRALVPVLGVGLSARPPARFEEFSMPMRVGARADERL 180
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
RSG L EV+DYLGIP SARPVV++VFSGPRSYVEIVAGCNRDG HTTT+VGLSIVDT+A
Sbjct 181 RSGESLDEVLDYLGIPVSARPVVQAVFSGPRSYVEIVAGCNRDGEHTTTDVGLSIVDTTA 240
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
GRVLVSPSRAFDGEWVSTFS GTPFA AVAI L A LPDGQWFPGQR+SRDFS+Q S
Sbjct 241 GRVLVSPSRAFDGEWVSTFSAGTPFATAVAIDQLIANLPDGQWFPGQRLSRDFSSQPS 298
>gi|118616925|ref|YP_905257.1| hypothetical protein MUL_1211 [Mycobacterium ulcerans Agy99]
gi|118569035|gb|ABL03786.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=298
Score = 464 bits (1194), Expect = 6e-129, Method: Compositional matrix adjust.
Identities = 231/298 (78%), Positives = 255/298 (86%), Gaps = 3/298 (1%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
M++ PNAVELTV+NAWFIAE +GAGTFPWVLAIT PYSD AQR A RQRDELT++GLL
Sbjct 1 MESMPNAVELTVENAWFIAEMVGAGTFPWVLAITTPYSDEAQRSALFARQRDELTQLGLL 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTG- 119
S GV+NPAVA+WIKVVCFP+RWLDLRYVGP + +G +LLRGIVA G + K
Sbjct 61 SSDGVVNPAVAEWIKVVCFPERWLDLRYVGPGTGNGGEDLLRGIVAQGAGIMGKAGKAHP 120
Query 120 --NGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
N VVALR AQLVTFTAMDIDDPRALVP+LGVGL+ RPPARF+EFS+P RVGARADERL
Sbjct 121 SFNTVVALRKAQLVTFTAMDIDDPRALVPVLGVGLSARPPARFEEFSMPMRVGARADERL 180
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
RSG L EV+DYLGIP SARPVV++VFSGPRSYVEIVAGCNRDG HTTT+VGLSIVDT+A
Sbjct 181 RSGESLDEVLDYLGIPVSARPVVQAVFSGPRSYVEIVAGCNRDGEHTTTDVGLSIVDTTA 240
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
GRVLVSPSRAFDGEWVSTFS GTPFA AVAI L A LPDGQWFPGQR+SRDFS+Q S
Sbjct 241 GRVLVSPSRAFDGEWVSTFSAGTPFATAVAIDQLIANLPDGQWFPGQRLSRDFSSQPS 298
>gi|296165971|ref|ZP_06848429.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898673|gb|EFG78221.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=291
Score = 457 bits (1177), Expect = 7e-127, Method: Compositional matrix adjust.
Identities = 225/296 (77%), Positives = 253/296 (86%), Gaps = 8/296 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
M A PNAVELTVD+AWFIAETIGAG+FPWVLAIT PY+DAA R AF++RQR ELT +GL+
Sbjct 1 MSAEPNAVELTVDHAWFIAETIGAGSFPWVLAITSPYTDAAHRQAFLERQRAELTELGLV 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPAS--ADGACELLRGIVALRTGTGKTSNKT 118
S G +NPAVADWI+VVCFP+RWLDLRYVGPA G E+LRGIVA R T T
Sbjct 61 SQGGAVNPAVADWIRVVCFPERWLDLRYVGPAREPGTGTGEMLRGIVAQRPAT------T 114
Query 119 GNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLR 178
+VALR+AQL+TFTAMDIDDPRALVP+LGVGLA +PPARFDEFS+P RVGARADERLR
Sbjct 115 AKTIVALRSAQLITFTAMDIDDPRALVPVLGVGLAQQPPARFDEFSMPARVGARADERLR 174
Query 179 SGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAG 238
SG PL EVVDYLGIP SAR VVESVF+GPRSYVEIVAGC+RDGRH TTEVG+SIVD +AG
Sbjct 175 SGAPLAEVVDYLGIPQSARAVVESVFNGPRSYVEIVAGCHRDGRHATTEVGMSIVDAAAG 234
Query 239 RVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQS 294
RVLVSPSRAFDGEWVSTF+PGTPFAIA+AI+ LTA LPD +WFPG R++RDF+ Q
Sbjct 235 RVLVSPSRAFDGEWVSTFAPGTPFAIALAIEQLTALLPDAEWFPGHRLARDFTAQH 290
>gi|342859227|ref|ZP_08715881.1| hypothetical protein MCOL_10123 [Mycobacterium colombiense CECT
3035]
gi|342133468|gb|EGT86671.1| hypothetical protein MCOL_10123 [Mycobacterium colombiense CECT
3035]
Length=318
Score = 453 bits (1166), Expect = 1e-125, Method: Compositional matrix adjust.
Identities = 227/294 (78%), Positives = 255/294 (87%), Gaps = 7/294 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
M+A+PNAVELTVD+AWFIAETIGAG+FPWVLAIT PY DAA+R AF+DRQ+ ELT +GL+
Sbjct 1 MNASPNAVELTVDHAWFIAETIGAGSFPWVLAITSPYRDAAERNAFLDRQKAELTELGLV 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGP--ASADGACELLRGIVALRTG-TGKTSNK 117
S G++NPAVA+WIKVVCFP+RWLDLRYVGP + +G ELLRG+VA RTG TGK S
Sbjct 61 SEGGLVNPAVAEWIKVVCFPERWLDLRYVGPPREAGEGGAELLRGVVAQRTGVTGKPSLT 120
Query 118 TGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
VVALR+AQL+TFTAMDIDDPRALVP+L VGLA RPPARFDEFSLPTRVGARADERL
Sbjct 121 ----VVALRSAQLITFTAMDIDDPRALVPVLTVGLAQRPPARFDEFSLPTRVGARADERL 176
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
RSG PL EV+DYLGIP SAR VVESVF+GPRSYVEIVAGC+RDGRH+TTEVG+SIVD
Sbjct 177 RSGAPLAEVLDYLGIPQSARRVVESVFNGPRSYVEIVAGCHRDGRHSTTEVGMSIVDARE 236
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFS 291
GRVLVSPSRAFDGEWVSTF+PG PFAIAVAI+ LTA LPD WF R++RDFS
Sbjct 237 GRVLVSPSRAFDGEWVSTFAPGAPFAIAVAIEQLTALLPDTGWFSEHRLARDFS 290
>gi|118465963|ref|YP_883987.1| hypothetical protein MAV_4864 [Mycobacterium avium 104]
gi|118167250|gb|ABK68147.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=293
Score = 453 bits (1166), Expect = 1e-125, Method: Compositional matrix adjust.
Identities = 229/297 (78%), Positives = 250/297 (85%), Gaps = 7/297 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
MD PNAVELTVD+AWFIAETIGAG+FPWVLAIT PY DAA+R AF+DRQR EL+ MGL+
Sbjct 1 MDPAPNAVELTVDHAWFIAETIGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLV 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPAS---ADGACELLRGIVALRTGTGKTSNK 117
S G+INPAVA+WIKVVCFP RWLDLRYVGPA G ELLRGIVA R G G S
Sbjct 61 SDAGLINPAVAEWIKVVCFPQRWLDLRYVGPAKDTGEGGGSELLRGIVAQRDGAGGRSIT 120
Query 118 TGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
VVALR+AQL+TFTAMDIDDPRALVP+L VGLA R PA FDEFS+PTRVGARADERL
Sbjct 121 ----VVALRSAQLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERL 176
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
R+G PL EV+DYLGIP SARPVVESVF+GPRSYVEIVAGC+RDGRH+TTEVG+SIVD
Sbjct 177 RAGAPLSEVLDYLGIPQSARPVVESVFNGPRSYVEIVAGCHRDGRHSTTEVGMSIVDARE 236
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQS 294
GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAI+ LTA LPD WF G R++RDFS Q
Sbjct 237 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWFAGHRLARDFSVQH 293
>gi|254777304|ref|ZP_05218820.1| hypothetical protein MaviaA2_21906 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=293
Score = 452 bits (1162), Expect = 4e-125, Method: Compositional matrix adjust.
Identities = 228/297 (77%), Positives = 249/297 (84%), Gaps = 7/297 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
MD PNAVELTVD+AWFIAET GAG+FPWVLAIT PY DAA+R AF+DRQR EL+ MGL+
Sbjct 1 MDPAPNAVELTVDHAWFIAETTGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLV 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADG---ACELLRGIVALRTGTGKTSNK 117
S G+INPAVA+WIKVVCFP RWLDLRYVGPA G ELLRGIVA R G G S
Sbjct 61 SDAGLINPAVAEWIKVVCFPQRWLDLRYVGPAKGTGEGGGSELLRGIVAQRDGAGGRSIT 120
Query 118 TGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
VVALR+AQL+TFTAMDIDDPRALVP+L VGLA R PA FDEFS+PTRVGARADERL
Sbjct 121 ----VVALRSAQLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERL 176
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
R+G PL EV+DYLGIP SARPVVESVF+GPRSYVEIVAGC+RDGRH+TTEVG+SIVD
Sbjct 177 RAGAPLSEVLDYLGIPQSARPVVESVFNGPRSYVEIVAGCHRDGRHSTTEVGMSIVDARE 236
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQS 294
GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAI+ LTA LPD WF G R++RDFS Q
Sbjct 237 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWFAGHRLARDFSVQH 293
>gi|41409883|ref|NP_962719.1| hypothetical protein MAP3785 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398715|gb|AAS06335.1| hypothetical protein MAP_3785 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=293
Score = 451 bits (1161), Expect = 4e-125, Method: Compositional matrix adjust.
Identities = 228/297 (77%), Positives = 249/297 (84%), Gaps = 7/297 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
MD PNAVELTVD+AWFIAET GAG+FPWVLAIT PY DAA+R AF+DRQR EL+ MGL+
Sbjct 1 MDPAPNAVELTVDHAWFIAETTGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLV 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPAS---ADGACELLRGIVALRTGTGKTSNK 117
S G+INPAVA+WIKVVCFP RWLDLRYVGPA G ELLRGIVA R G G S
Sbjct 61 SDAGLINPAVAEWIKVVCFPQRWLDLRYVGPAKDTGEGGGSELLRGIVAQRDGAGGRSIT 120
Query 118 TGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
VVALR+AQL+TFTAMDIDDPRALVP+L VGLA R PA FDEFS+PTRVGARADERL
Sbjct 121 ----VVALRSAQLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERL 176
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
R+G PL EV+DYLGIP SARPVVESVF+GPRSYVEIVAGC+RDGRH+TTEVG+SIVD
Sbjct 177 RAGAPLSEVLDYLGIPQSARPVVESVFNGPRSYVEIVAGCHRDGRHSTTEVGMSIVDARE 236
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQS 294
GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAI+ LTA LPD WF G R++RDFS Q
Sbjct 237 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWFAGHRLARDFSVQH 293
>gi|254821603|ref|ZP_05226604.1| hypothetical protein MintA_16837 [Mycobacterium intracellulare
ATCC 13950]
Length=300
Score = 450 bits (1157), Expect = 1e-124, Method: Compositional matrix adjust.
Identities = 228/298 (77%), Positives = 255/298 (86%), Gaps = 7/298 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
M+ PNAVELTVD+AWFIAETIGAG+FPWVLAIT PY DAA+R AF+DRQ+ ELT+MGL+
Sbjct 1 MEPAPNAVELTVDHAWFIAETIGAGSFPWVLAITCPYRDAAERNAFLDRQKAELTQMGLV 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPAS----ADGACELLRGIVALRTGTGKTSN 116
S G+INPAVA+WIKVVCFP+RWLDLRYVGPA A GA ELLRGIVA R G G +
Sbjct 61 SEGGLINPAVAEWIKVVCFPERWLDLRYVGPAKDAGAAGGAGELLRGIVAQRAGAGGRPS 120
Query 117 KTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADER 176
+T VVALR+AQL+TFTAMDIDDPRALVP+L VGLA R PARFDEFS+PTR GARADER
Sbjct 121 RT---VVALRSAQLITFTAMDIDDPRALVPVLCVGLAQRQPARFDEFSMPTRAGARADER 177
Query 177 LRSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTS 236
LRSG PL EV+DYLGIP SARPVVESVF+G RSYVEIVAGC+RDGRH+TTEVG+SIVD S
Sbjct 178 LRSGAPLAEVLDYLGIPQSARPVVESVFNGSRSYVEIVAGCHRDGRHSTTEVGMSIVDAS 237
Query 237 AGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQS 294
GRVLVSPSRAFDGEWVSTF+PGTPFAIAVAI+ LTA LPD WF R++RDFS +
Sbjct 238 EGRVLVSPSRAFDGEWVSTFAPGTPFAIAVAIEQLTAQLPDAGWFAEHRLARDFSNST 295
>gi|336460256|gb|EGO39159.1| hypothetical protein MAPs_42840 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=293
Score = 449 bits (1155), Expect = 3e-124, Method: Compositional matrix adjust.
Identities = 227/297 (77%), Positives = 248/297 (84%), Gaps = 7/297 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
MD PNAVELTVD+AWFIAET GAG+FPWVLAIT PY DAA+R AF+DRQR EL+ MGL+
Sbjct 1 MDPAPNAVELTVDHAWFIAETTGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLV 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPAS---ADGACELLRGIVALRTGTGKTSNK 117
S G+INPAVA+WIKVVCFP RWLDLRYVGPA G ELLRGIVA R G G S
Sbjct 61 SDAGLINPAVAEWIKVVCFPQRWLDLRYVGPAKDTGEGGGSELLRGIVAQRDGAGGRSIT 120
Query 118 TGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
VVALR+AQL+TFTAMDIDDPRALVP+L VGLA R PA FDEFS+PTRVGARADERL
Sbjct 121 ----VVALRSAQLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERL 176
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
R+G PL EV+DYLGIP ARPVVESVF+GPRSYVEIVAGC+RDGRH+TTEVG+SIVD
Sbjct 177 RAGAPLSEVLDYLGIPQPARPVVESVFNGPRSYVEIVAGCHRDGRHSTTEVGMSIVDARE 236
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQS 294
GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAI+ LTA LPD WF G R++RDFS Q
Sbjct 237 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWFAGHRLARDFSVQH 293
>gi|15828362|ref|NP_302625.1| DNA-binding protein [Mycobacterium leprae TN]
gi|221230839|ref|YP_002504255.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
gi|13093792|emb|CAC32061.1| possible DNA-binding protein [Mycobacterium leprae]
gi|219933946|emb|CAR72629.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length=289
Score = 448 bits (1153), Expect = 4e-124, Method: Compositional matrix adjust.
Identities = 224/295 (76%), Positives = 247/295 (84%), Gaps = 6/295 (2%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
M PNAVELTVD+AWFIAE IGAG+FPWVLAIT PY DA +R AFV+RQ DELTRMGLL
Sbjct 1 MKVDPNAVELTVDHAWFIAEVIGAGSFPWVLAITTPYRDAGERSAFVERQVDELTRMGLL 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN 120
+ ++P VADWI+VVCFPDRWLDLRY+ SA G ELLRG+VA R G S+KT
Sbjct 61 VAENSVDPTVADWIRVVCFPDRWLDLRYLRSTSAVGDSELLRGMVAQRAGV---SDKT-- 115
Query 121 GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG 180
VVALR+AQL+TFTAMDIDDP LVPILG GLA RPPARFDEFS+P RVG RADERLRSG
Sbjct 116 -VVALRSAQLITFTAMDIDDPLRLVPILGAGLAQRPPARFDEFSMPMRVGVRADERLRSG 174
Query 181 VPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV 240
L EV DYLGIP SA+PVVESVFSGPRSYVEIVAGC RDG+H TTEVG+SIVDT+ GRV
Sbjct 175 TSLAEVADYLGIPKSAQPVVESVFSGPRSYVEIVAGCRRDGKHATTEVGMSIVDTTTGRV 234
Query 241 LVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
LV+PSRAFDGEWVSTFSPGTPFAIAV I+ LTA LP+GQWFPGQR+ RDFS Q+S
Sbjct 235 LVNPSRAFDGEWVSTFSPGTPFAIAVGIEQLTATLPEGQWFPGQRLCRDFSGQTS 289
>gi|333988937|ref|YP_004521551.1| hypothetical protein JDM601_0297 [Mycobacterium sp. JDM601]
gi|333484905|gb|AEF34297.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=293
Score = 437 bits (1124), Expect = 1e-120, Method: Compositional matrix adjust.
Identities = 216/291 (75%), Positives = 246/291 (85%), Gaps = 4/291 (1%)
Query 5 PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 64
PNA ELTV+ AW+IAETIGAG+FPWVLAITMPY+DA +RGAF+ RQR+ELTRMG++SP G
Sbjct 7 PNAAELTVEQAWYIAETIGAGSFPWVLAITMPYTDAGERGAFMARQREELTRMGVVSPDG 66
Query 65 VINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA 124
IN VA+WI+VVCFPDRWLDLRYVG S GA E+LRGIVA R +T VVA
Sbjct 67 TINAYVAEWIRVVCFPDRWLDLRYVGSPSG-GADEMLRGIVARRDPGSAKPTRT---VVA 122
Query 125 LRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
LRNAQLVTFTAMDI D R LVP+LG GL RPPARFDEF+LP RVG RADERLR+G LG
Sbjct 123 LRNAQLVTFTAMDIADSRLLVPVLGAGLRQRPPARFDEFTLPARVGVRADERLRAGAALG 182
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSP 244
EV+DYLGIPASARPVVESVF+GPRSYVE+VAGC ++GRH TTEVG+S+VDT GR+LV+P
Sbjct 183 EVLDYLGIPASARPVVESVFAGPRSYVEVVAGCAQNGRHATTEVGMSLVDTEQGRILVTP 242
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
S+AFDGEWVSTF PGT FA AVAI+ LTA LP+GQWFPGQR+SRDF+TQ S
Sbjct 243 SQAFDGEWVSTFRPGTDFATAVAIEELTATLPEGQWFPGQRLSRDFTTQLS 293
>gi|298523760|ref|ZP_07011169.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298493554|gb|EFI28848.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=229
Score = 389 bits (999), Expect = 3e-106, Method: Compositional matrix adjust.
Identities = 193/193 (100%), Positives = 193/193 (100%), Gaps = 0/193 (0%)
Query 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL
Sbjct 1 MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLL 60
Query 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN 120
SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN
Sbjct 61 SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGN 120
Query 121 GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG 180
GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG
Sbjct 121 GVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSG 180
Query 181 VPLGEVVDYLGIP 193
VPLGEVVDYLGIP
Sbjct 181 VPLGEVVDYLGIP 193
>gi|169629313|ref|YP_001702962.1| hypothetical protein MAB_2227c [Mycobacterium abscessus ATCC
19977]
gi|169241280|emb|CAM62308.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=287
Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/287 (58%), Positives = 211/287 (74%), Gaps = 7/287 (2%)
Query 4 TPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQ 63
+P+AVELTVD AWF+A+T+ AGTFPWVLA+T+P+ D AQR F ++ ELTR G+L P
Sbjct 7 SPDAVELTVDQAWFLADTLSAGTFPWVLAVTVPFRDEAQRAGFNAQRVQELTRAGILEPD 66
Query 64 GVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVV 123
G ++PAVA WI+ VC PDRWL+LRYV S + +++RGI+A + G+ VV
Sbjct 67 GTVDPAVAGWIRTVCRPDRWLELRYVAAGSEN--PDVMRGIIARKQSQGRAQT-----VV 119
Query 124 ALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPL 183
+LRNA L+TFT +D DD ALVP + GL R PARF EF+LPT VGA+ADE+LRSG L
Sbjct 120 SLRNAHLITFTVVDADDSSALVPSVVAGLRWRAPARFPEFTLPTNVGAKADEQLRSGASL 179
Query 184 GEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVS 243
+V+ YLG+P +A+ VVES F G R+YVE+VAG T+EVG+S+VDTSAGR+LVS
Sbjct 180 ADVMGYLGVPPAAQNVVESAFVGNRNYVEVVAGQRDSTTQQTSEVGISVVDTSAGRILVS 239
Query 244 PSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDF 290
P RA DG W+STF+PG PFAIAVA++ L A LP+G WFP RV+RDF
Sbjct 240 PHRAGDGTWLSTFAPGAPFAIAVAVEQLMATLPNGHWFPDARVTRDF 286
>gi|118470815|ref|YP_885033.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
gi|118172102|gb|ABK72998.1| putative DNA-binding protein [Mycobacterium smegmatis str. MC2
155]
Length=293
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/291 (59%), Positives = 217/291 (75%), Gaps = 14/291 (4%)
Query 5 PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 64
PNAVELT D AW +A+ +GAG++PWVLAIT PYSD +QR AF+ Q ELTRMG+++ G
Sbjct 3 PNAVELTTDQAWCLADVLGAGSYPWVLAITPPYSDHSQRSAFLAAQSAELTRMGVVNSAG 62
Query 65 VINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA 124
++P VA WI VC +WLDLR+V G +LLRG+VA R S +T VVA
Sbjct 63 AVDPRVAQWITTVCRATQWLDLRFVS-----GPGDLLRGMVARR------SEET---VVA 108
Query 125 LRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
LRNAQLVTFTAMDI ALVP+L GL+ R PARFD+F+LP GARADE++R+G PL
Sbjct 109 LRNAQLVTFTAMDIGHQHALVPVLTAGLSGRKPARFDDFALPAAAGARADEQIRNGAPLA 168
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSP 244
EV+++LG+P SARP+VESVF G R+YVEIVAG +RDG TTEVG+SI+DT GR+LV P
Sbjct 169 EVLEFLGVPPSARPLVESVFDGRRTYVEIVAGEHRDGHRVTTEVGVSIIDTPHGRILVHP 228
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
++AFDGEW+STF+PG+ AIA+A++ LTA LP G WFP Q ++RDF ++
Sbjct 229 TKAFDGEWISTFTPGSADAIAMAVERLTASLPSGSWFPDQPLTRDFDEDAA 279
>gi|108797358|ref|YP_637555.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119866442|ref|YP_936394.1| putative DNA-binding protein [Mycobacterium sp. KMS]
gi|108767777|gb|ABG06499.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119692531|gb|ABL89604.1| putative DNA-binding protein [Mycobacterium sp. KMS]
Length=314
Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/289 (58%), Positives = 207/289 (72%), Gaps = 14/289 (4%)
Query 5 PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 64
PNAVELT AWF+A+ +GAG+ PWVLA+T PYS A R F L +G+LS G
Sbjct 3 PNAVELTAAQAWFVADAVGAGSLPWVLAVTPPYSQEADRAPFTAETVASLETLGVLSGDG 62
Query 65 VINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA 124
V++ VADW++VVC ++WLDLR+V G LLRG+VA R +++T VVA
Sbjct 63 VVDARVADWVRVVCRAEQWLDLRFVS-----GRGALLRGVVARR------ADQT---VVA 108
Query 125 LRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
LR+ L+TFT M ID P ALVP+L GL+ R PARF EF+LP VGARADE++R G PL
Sbjct 109 LRSRSLITFTRMAIDHPHALVPVLCAGLSGRAPARFAEFTLPAAVGARADEQIRQGTPLA 168
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSP 244
EV+D+LGIP SARPVVE+ F R+YVEIVAG +RDG TT+VG+S+VDT+ GRVLVSP
Sbjct 169 EVLDFLGIPPSARPVVEAAFDTSRTYVEIVAGEHRDGHRVTTQVGVSVVDTTEGRVLVSP 228
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQ 293
RAFDGEWVSTF+PGTPFAIA A++ LT LP G WFP ++RDF T+
Sbjct 229 VRAFDGEWVSTFAPGTPFAIAAAVERLTGSLPSGAWFPDLHLTRDFDTR 277
>gi|126432979|ref|YP_001068670.1| putative DNA-binding protein [Mycobacterium sp. JLS]
gi|126232779|gb|ABN96179.1| putative DNA-binding protein [Mycobacterium sp. JLS]
Length=314
Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/289 (58%), Positives = 207/289 (72%), Gaps = 14/289 (4%)
Query 5 PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 64
PNAVELT AWF+A+ +GAG+ PWVLA+T PYS A R F L +G+LS G
Sbjct 3 PNAVELTAAQAWFVADAVGAGSLPWVLAVTPPYSQEADRVPFTAETVAALETLGVLSGDG 62
Query 65 VINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA 124
V++ VADW++VVC ++WLDLR+V G LLRG+VA R +++T VVA
Sbjct 63 VVDARVADWVRVVCRAEQWLDLRFVS-----GRGALLRGVVARR------ADQT---VVA 108
Query 125 LRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
LR+ L+TFT M ID P ALVP+L GL+ R PARF EF+LP VGARADE++R G PL
Sbjct 109 LRSRSLITFTRMAIDHPHALVPVLCAGLSGRAPARFAEFTLPAAVGARADEQIRQGTPLA 168
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSP 244
EV+D+LGIP SARPVVE+ F R+YVEIVAG +RDG TT+VG+S+VDT+ GRVLVSP
Sbjct 169 EVLDFLGIPPSARPVVEAAFDTSRTYVEIVAGEHRDGHRVTTQVGVSVVDTTEGRVLVSP 228
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQ 293
RAFDGEWVSTF+PGTPFAIA A++ LT LP G WFP ++RDF T+
Sbjct 229 VRAFDGEWVSTFAPGTPFAIAAAVERLTGSLPSGAWFPDLHLTRDFDTR 277
>gi|120401444|ref|YP_951273.1| putative DNA-binding protein [Mycobacterium vanbaalenii PYR-1]
gi|119954262|gb|ABM11267.1| putative DNA-binding protein [Mycobacterium vanbaalenii PYR-1]
Length=286
Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/290 (58%), Positives = 218/290 (76%), Gaps = 14/290 (4%)
Query 6 NAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
+AVELT + AWF+A+T+GAGTFPWVLAIT PYSD +QR F Q + LTRMG++
Sbjct 4 DAVELTAEAAWFLADTLGAGTFPWVLAITPPYSDRSQRAQFESEQAERLTRMGVMDADRA 63
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
++ AVA WI++VC P +WL+LR+VG A GA +LRGI+A + +++T VVAL
Sbjct 64 VDAAVARWIRLVCRPTQWLELRFVG---ARGA--MLRGIIA------RDASRT---VVAL 109
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
R+ L+T T M ID P+ALVP+L VGL+ R PARF EFSLP RVGA+AD+++R G + +
Sbjct 110 RSGGLITLTEMQIDHPQALVPVLTVGLSGRSPARFPEFSLPARVGAKADDQIRRGASVRD 169
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPS 245
++DYLG+P SARPVV + F R+YVEIVAG +RDG +T+VG+SIVDT+AGRVLVSP+
Sbjct 170 LLDYLGVPPSARPVVVAAFEEARTYVEIVAGRHRDGHRVSTDVGVSIVDTTAGRVLVSPT 229
Query 246 RAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS 295
RA DGEW+STF+PG P A+A A++ LTA LPDG WFP Q V+RDF ++S
Sbjct 230 RARDGEWISTFAPGDPIAVATAVERLTAALPDGPWFPDQPVTRDFDSRSQ 279
>gi|145220926|ref|YP_001131604.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
gi|145213412|gb|ABP42816.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
Length=290
Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/285 (55%), Positives = 206/285 (73%), Gaps = 14/285 (4%)
Query 6 NAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
NAVEL+ +AWF+AE +GAG++PWVLAIT PYSD + RG F Q ++L G+++ +
Sbjct 4 NAVELSAASAWFLAEELGAGSYPWVLAITPPYSDVSARGPFEREQTEKLRGAGIMTAERT 63
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
++PAVA WI+ VC P +WL+LR+VG A +LRG++A R G G V+AL
Sbjct 64 VDPAVARWIRRVCRPTQWLELRFVGSRGA-----VLRGVLA-RDGAGT--------VIAL 109
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
R+ L+T T +DID P ALVP++ GL+ R PARFD FSLP RVGA+ADE++R G +G
Sbjct 110 RSGGLITLTELDIDHPEALVPVVTAGLSGRAPARFDGFSLPARVGAKADEQIRKGAAVGG 169
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPS 245
++DYLGIP SARPVV + F R+YVEIVAG +RDG +T+VG+S+VDT GRVLVSP+
Sbjct 170 LLDYLGIPPSARPVVVAAFEDSRTYVEIVAGQHRDGHRVSTDVGVSVVDTVLGRVLVSPA 229
Query 246 RAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDF 290
+A DGEW+STF+PG P AIA A++ LTA LPDG WFP ++RDF
Sbjct 230 KARDGEWISTFAPGDPVAIAAAVERLTAALPDGPWFPDHALTRDF 274
>gi|315442104|ref|YP_004074983.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
gi|315260407|gb|ADT97148.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
Length=290
Score = 305 bits (781), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 155/285 (55%), Positives = 205/285 (72%), Gaps = 14/285 (4%)
Query 6 NAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
NAVEL+ +AWF+AE +GAG++PWVLAIT PYSD + RG F Q ++L G+++ +
Sbjct 4 NAVELSAASAWFLAEELGAGSYPWVLAITPPYSDVSARGPFEREQTEKLRGAGIMTAERT 63
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
++PAVA WI+ VC P +WL+LR+VG A +LRG++A R G G V+AL
Sbjct 64 VDPAVARWIRRVCRPTQWLELRFVGSRGA-----VLRGVLA-RDGAGT--------VIAL 109
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
R+ L+T T +DID P ALVP++ GL+ R PARFD FSLP RVGA+ADE++R G +G
Sbjct 110 RSGGLITLTELDIDHPEALVPVVTAGLSGRAPARFDGFSLPARVGAKADEQIRKGAAVGG 169
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPS 245
++DYLGIP SARPVV + F R+YVEIVAG +RDG +T+VG+S+VDT GRVLV P+
Sbjct 170 LLDYLGIPPSARPVVVAAFEDSRTYVEIVAGQHRDGHRVSTDVGVSVVDTVLGRVLVCPA 229
Query 246 RAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDF 290
+A DGEW+STF+PG P AIA A++ LTA LPDG WFP ++RDF
Sbjct 230 KARDGEWISTFAPGDPVAIAAAVERLTAALPDGPWFPDHALTRDF 274
>gi|317506399|ref|ZP_07964206.1| hypothetical protein HMPREF9336_00576 [Segniliparus rugosus ATCC
BAA-974]
gi|316255305|gb|EFV14568.1| hypothetical protein HMPREF9336_00576 [Segniliparus rugosus ATCC
BAA-974]
Length=302
Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/296 (55%), Positives = 203/296 (69%), Gaps = 15/296 (5%)
Query 2 DATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLS 61
D P A ELTV+ AWF+ E +GAG FPW LAIT PY D QR + +L +G++
Sbjct 16 DRPPVAAELTVEQAWFLGERLGAGAFPWALAITAPYQDERQRVRLGAQHAKDLAEVGVVG 75
Query 62 PQGVINPAVADWIKVVCFPDRWLDLRYV-GPASADG-----ACELLRGIVALRTGTGKTS 115
G ++P+VA WI VC PDRWL+LRYV ADG +LLRG VA +T
Sbjct 76 ADGSVDPSVAGWIHTVCRPDRWLELRYVVASPHADGDPGSAHPKLLRGFVA------RTQ 129
Query 116 NKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADE 175
++T VVALRNAQLV FTA++ D+P ALVP + GL+ R PA+F EF+LP GA+ADE
Sbjct 130 SQT---VVALRNAQLVAFTAIEADEPSALVPSVVAGLSQRAPAQFPEFTLPAEAGAKADE 186
Query 176 RLRSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDT 235
+LRSG L +VV+ LGIP +ARPVV++ G RSYVE+VAG +TEVG+S+VDT
Sbjct 187 KLRSGASLDDVVERLGIPPAARPVVQAALRGRRSYVEVVAGQRDGAAKRSTEVGVSVVDT 246
Query 236 SAGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFS 291
AGRVLVSP RA DG W+STF+PGTPFAIAVA+ LTA LP+G+WFP R+++ F+
Sbjct 247 GAGRVLVSPRRAADGVWLSTFAPGTPFAIAVAVDQLTAELPEGRWFPNARLTKSFN 302
>gi|317506273|ref|ZP_07964089.1| hypothetical protein HMPREF9336_00458 [Segniliparus rugosus ATCC
BAA-974]
gi|316255431|gb|EFV14685.1| hypothetical protein HMPREF9336_00458 [Segniliparus rugosus ATCC
BAA-974]
Length=304
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/258 (45%), Positives = 150/258 (59%), Gaps = 14/258 (5%)
Query 5 PNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 64
P+AVELT AWFIA+ IGAG +PW LAIT P+ D R EL +G++ G
Sbjct 25 PDAVELTAAQAWFIADQIGAGEYPWSLAITQPFGSPLVADKIADELRQELAALGVIGKDG 84
Query 65 VINPAVADWIKVVCFPDRWLDLRYV--GPASADGACELLRGIVALRTGTGKTSNKTGNGV 122
I+ VA W++ VC R + R V G + D LR +VA + G V
Sbjct 85 EIDQRVATWVRTVCAARRCFEARTVRGGVPALDARSNQLRTLVA---------QQDGLTV 135
Query 123 VALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVP 182
VA+R LVTFT + PR L +L GL PA+F +F+LPT GA+ADERLR+GV
Sbjct 136 VAMRAGALVTFTQLGAPHPRTLASVLTAGLPGAEPAKFRQFALPTSDGAKADERLRAGVS 195
Query 183 LGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLV 242
V+ LGIP A + ++F+GPRSYVEI R + +G+ ++DT AGRVLV
Sbjct 196 ADAVLAGLGIPEEASAALRAMFAGPRSYVEI---SFRSKPGSAENIGIGVLDTVAGRVLV 252
Query 243 SPSRAFDGEWVSTFSPGT 260
+PSRA DG+WVSTFSPGT
Sbjct 253 APSRAPDGQWVSTFSPGT 270
>gi|108802526|ref|YP_642722.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119855355|ref|YP_935958.1| putative DNA-binding protein [Mycobacterium sp. KMS]
gi|108772945|gb|ABG11666.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119698072|gb|ABL95143.1| putative DNA-binding protein [Mycobacterium sp. KMS]
Length=276
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/285 (39%), Positives = 162/285 (57%), Gaps = 17/285 (5%)
Query 6 NAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
AVE+T AWF+AE + AG +PW LAIT PY D +R F ++ ELT+ G++ G
Sbjct 5 EAVEVTAQQAWFLAEYLNAGMYPWKLAITSPYLDPGEREGFNEQTLGELTKTGVIDGDGR 64
Query 66 INPAVADWIKVVCFPDRWLD-LRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVA 124
+ P+VA+ ++ VC +WL+ + V P ++LRG++A T + VVA
Sbjct 65 VKPSVAEAVRTVCQATQWLEWMTLVAPE------QVLRGVLARTT--------PPDVVVA 110
Query 125 LRNAQLVTFTAMDIDDPRALVPILGVGL-AHRPPARFDEFSLPTRVGARADERLRSGVPL 183
LR AQ+VTFT + + A+VPI+ GL + PARFDEF+LP +G DER+R G +
Sbjct 111 LRYAQMVTFTPLQLTHSEAIVPIITAGLPPDQSPARFDEFTLPMDIGKAIDERIRRGADV 170
Query 184 GEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVS 243
E + LG+P ++E +G R VE+ A +G T+V ++++ T G +LVS
Sbjct 171 TETLVDLGVPERDAEIMEIARTGERITVELTAHEAFNGARNQTDVSVNLISTEVGLILVS 230
Query 244 PSRAFDGE-WVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVS 287
P E S F+P PFA+++A++ LT LP G WFP + S
Sbjct 231 PPAGEPREGGNSVFAPAEPFAVSMAVRDLTERLPSGTWFPNESYS 275
>gi|296393174|ref|YP_003658058.1| hypothetical protein Srot_0747 [Segniliparus rotundus DSM 44985]
gi|296180321|gb|ADG97227.1| hypothetical protein Srot_0747 [Segniliparus rotundus DSM 44985]
Length=328
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/274 (40%), Positives = 150/274 (55%), Gaps = 17/274 (6%)
Query 3 ATPN---AVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGL 59
ATP+ AVELT+ AW +AE +GAG +P L IT P++ + R EL +G+
Sbjct 35 ATPDSFDAVELTLHQAWLVAELVGAGEYPSSLFITAPFAPGHVAEPVISHVRQELVELGV 94
Query 60 LSPQGVINPAVADWIKVVCFPDRWLDLRYV--GPASADGACELLRGIVALRTGTGKTSNK 117
+ P G ++ VA W+ VC ++ + R V D L +A +
Sbjct 95 IGPDGKVDKRVASWVSAVCAAQQFFEARTVRGDKNVMDVGSNQLHAFIA---------HN 145
Query 118 TGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
VVA+R LVTFT + P+ L +L GL PA+F +F+LPT GA+ADERL
Sbjct 146 DSQTVVAMRAGGLVTFTQLGSPHPKTLASVLTAGLPGAKPAKFRQFALPTAAGAKADERL 205
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
R G V+ LG+ AR ++++ G RS+VEI G T VG+ ++DT+
Sbjct 206 RRGAAPEAVLAELGLSEEARTTLKAMLDGRRSFVEISFGAR---LRKTDRVGIGVLDTAL 262
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTL 271
GRVLV+PSRA DG+W+STFSPGT AIA A+Q L
Sbjct 263 GRVLVAPSRAPDGQWLSTFSPGTTPAIAAAVQQL 296
>gi|262203518|ref|YP_003274726.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
gi|262086865|gb|ACY22833.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
Length=275
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/269 (30%), Positives = 121/269 (45%), Gaps = 19/269 (7%)
Query 18 IAETIGAGTFPWVLAI--TMPYSDAAQ-RGAFVDRQ-RDELTRMGLLSPQGVINPAVADW 73
+ + GA T+P VL I + DAA R A + + GL+ G
Sbjct 22 LGQRFGAQTWPVVLDIEGVLDIDDAAAARPALSHAELHQRIAETGLVCSDGEPTTLCDTV 81
Query 74 IKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTF 133
I+V+C P+R +++R + A R I R+G + V+A+R+ +
Sbjct 82 IRVLCAPERMIEMRTIADAG-------FRRICLARSGN--------DHVLAVRDGARIEL 126
Query 134 TAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGEVVDYLGIP 193
+ + L +L L R P FD S P R RSG+ + + + +G
Sbjct 127 SVVSPTGVGELGALLRARLPERAPCVFDAISHPAAELLDRLGRCRSGLDMTDALHAMGAS 186
Query 194 ASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPSRAFDGEWV 253
VV + F+ R EIVA + G T + ++I+DT GR++ SPS++ DG
Sbjct 187 PGDAMVVSAAFASCRVQTEIVAVAHDAGVLTQSSGAVAILDTDKGRIVSSPSKSPDGRVW 246
Query 254 STFSPGTPFAIAVAIQTLTACLPDGQWFP 282
+T SPG+ IA AI L LPDG+WFP
Sbjct 247 TTLSPGSGHRIAQAIGLLIETLPDGRWFP 275
>gi|343927680|ref|ZP_08767148.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC
16433]
gi|343762321|dbj|GAA14074.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC
16433]
Length=268
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/264 (29%), Positives = 116/264 (44%), Gaps = 18/264 (6%)
Query 18 IAETIGAGTFPWVLAITMPYSD-AAQRGAFVDRQRDELTRMGLLSPQGVINPAVADWIKV 76
+ + G T+P VL + + +D AQR DR+ D L P +A ++V
Sbjct 20 LGDRFGVQTWPVVLDMPVGAADETAQR--LADRESDAAIAALDLVDHDEPVPWLATVLRV 77
Query 77 VCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAM 136
+ P+R +++R C RG V+A R + + +
Sbjct 78 LSRPEREIEMRGFTETGVRRICLARRGY---------------EHVLAERAGDRLDLSVV 122
Query 137 DIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGEVVDYLGIPASA 196
++ D A+ +L F FS+PT R S + + + LG P S
Sbjct 123 EVADLDAVADLLRSRFDDAAACEFTSFSVPTDDLVDGLGRSGSATEITDALYTLGAPLSD 182
Query 197 RPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPSRAFDGEWVSTF 256
V+ S F+ R EIVA N DGR + + L++ DT+ GR++ SPS++ DG +T
Sbjct 183 AVVISSAFASCRVRTEIVASANEDGRFSQSSGALAVFDTARGRIVSSPSKSPDGRVWTTL 242
Query 257 SPGTPFAIAVAIQTLTACLPDGQW 280
SPG+ IA A++ L LPDG W
Sbjct 243 SPGSGHRIAQAVRLLIETLPDGTW 266
>gi|315441746|ref|YP_004074625.1| hypothetical protein Mspyr1_00560 [Mycobacterium sp. Spyr1]
gi|315260049|gb|ADT96790.1| hypothetical protein Mspyr1_00560 [Mycobacterium sp. Spyr1]
Length=283
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/283 (30%), Positives = 129/283 (46%), Gaps = 34/283 (12%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VELT+D +A+ + FP L I +PY + QR D+ +LT G+L+ G
Sbjct 20 VELTIDGMLVVADLLHLVDFPLALGIRPNIPYEE--QRKVVWDQVTHDLTAQGILTAYGD 77
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
+P VA + + DR LD R+ D +++R +V + + + + +V
Sbjct 78 PHPEVAAMVDALSRADRTLDCRW---WRRDVGGKMVRFVVCRKGERHVVAARDDDMLVLQ 134
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFS-LPTRVG-ARADERL-RSGVP 182
R A + AM + ++G G PA + + L T + AR+ E+L R G P
Sbjct 135 RVAPQIGLAAM-------VNVVIGAG----APANVEPLTGLATELAQARSAEQLGRYGQP 183
Query 183 LGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNR-DGRHTTTEVGLSIVDTSAGRVL 241
P SA+ E+ S P S+VEI A G ++ VG ++D+S GR++
Sbjct 184 ----------PHSAKVYAEASAS-PDSWVEITANERHPGGTYSQAGVGAGVLDSSHGRIV 232
Query 242 VSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQ 284
P R +GE +F PGTP + A+ L LP WF Q
Sbjct 233 SIPRR-VNGELYGSFLPGTPENLQRALDGLIEFLPSATWFEHQ 274
>gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocardia farcinica IFM 10152]
gi|54014296|dbj|BAD55666.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=264
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/290 (33%), Positives = 123/290 (43%), Gaps = 47/290 (16%)
Query 10 LTVDNAWFIAETIGAGTFPWVLAI-----TMPYSDAAQRGAFVDRQRDELTRMGLLSPQG 64
LT D +AE +G T P VL I T AAQR A D LT GL+ G
Sbjct 4 LTNDGVLALAERLGIQTMPLVLGIGPRQQTYDAWTAAQRRAVAD-----LTGAGLIDGYG 58
Query 65 VINPAVADWIKVVCFPDRWLDLR-YVGPASADGACELLRG---IVALRTGTGKT-----S 115
++P +AD + V+ PDR L R Y G + C LRG +ALR G S
Sbjct 59 EVDPELADAMYVLAQPDRELVARVYPGDGAPTRLCLALRGERHALALRRGDDIRIEPAWS 118
Query 116 NKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADE 175
+++G+ +VA +G A PA FS P A E
Sbjct 119 DESGSALVAALLRA--------------------LGPAE--PADVAPFSAPA---AELAE 153
Query 176 RL---RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSI 232
RL R+ + V LG+ P F R+Y EIVA + DG T +
Sbjct 154 RLSAARTSADFTDAVYALGVAERDAPRYGLAFESCRAYAEIVAYAHVDGVTTRPPCAAVV 213
Query 233 VDTSAGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFP 282
+T GR++V+P A D + ST +PGT +A AI L LP G+W P
Sbjct 214 YETGRGRIVVAPGIAPDQQVWSTVTPGTDHRVAQAISGLIETLPGGRWLP 263
>gi|240170253|ref|ZP_04748912.1| hypothetical protein MkanA1_13143 [Mycobacterium kansasii ATCC
12478]
Length=275
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/279 (30%), Positives = 117/279 (42%), Gaps = 32/279 (11%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVIN 67
V+LT+D+ IAE + FP L I DR R +LT G+L G +
Sbjct 19 VKLTIDSVLVIAERLPMVDFPTALGIRPNIPQKELPDVVWDRVRRDLTAQGVLDQYGQPH 78
Query 68 PAVADWIKVVCFPDRWLD----LRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVV 123
P VA + + PDR L+ RYVG A A R +V K VV
Sbjct 79 PTVAAMVDTLSRPDRTLEGRWWRRYVGGAMA-------RFVVC---------RKGDRHVV 122
Query 124 ALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPL 183
A R+ Q++ ++ L ++ L PA + + V + E + P
Sbjct 123 AARDGQMLVLQL--VEPQVGLAGMITTVLGPALPANVEPLA---GVASELAECTTAAPPA 177
Query 184 GEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLV 242
G+PA+ V + + P S+VEIVA G TT T+ ++D++ GR LV
Sbjct 178 RH-----GVPAATTRVFTEIVNNPSSWVEIVASQRHSGGTTTQTDAAAGVLDSTLGR-LV 231
Query 243 SPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
S R GE F PGT + A+ +L LP G WF
Sbjct 232 SLPRCVGGELYGCFLPGTQQNLQRALDSLLELLPAGAWF 270
>gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_03472 [Mycobacterium kansasii ATCC
12478]
Length=283
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/278 (29%), Positives = 122/278 (44%), Gaps = 30/278 (10%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D +A+ + FP L I +P D R D+ R +LT G+L G
Sbjct 19 VEVTIDGMLVLADRLHLVDFPVALGIRPNIPQDDL--REIVWDQVRRDLTAQGVLDHNGY 76
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
+P VA + + PDR L+ R+ D ++R +V K V+A+
Sbjct 77 PHPTVASMVDTLSRPDRTLEARW---WRRDVGGVMVRFVVC---------RKDDRHVIAV 124
Query 126 RNAQLVTFTAMDIDDPRALVPILGV-GLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
RN L+ + + P +G+ G+ D S+ G ++ L
Sbjct 125 RNGDLLVL--------QLVAPQVGLAGMVTAVLGTADPASVEPLTGIASE--LAECTTAA 174
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVS 243
++ Y P +AR E + S P S+VEIVA G TT T+ ++D++ GRV VS
Sbjct 175 QLTRYGLAPTAARIYTE-IVSNPDSWVEIVASQRHPGGTTTHTKAAAGVLDSAHGRV-VS 232
Query 244 PSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
R GE +F PGTP + +A+ L LP G W
Sbjct 233 LPRIVSGELYGSFLPGTPQNLQLALDALVELLPAGSWL 270
>gi|145221370|ref|YP_001132048.1| hypothetical protein Mflv_0775 [Mycobacterium gilvum PYR-GCK]
gi|145213856|gb|ABP43260.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=308
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/280 (29%), Positives = 127/280 (46%), Gaps = 34/280 (12%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VELT+D IA+ + FP L I +PY + QR D+ +LT G+L+ G
Sbjct 45 VELTIDGMLVIADLLHLVDFPLALGIRPNIPYEE--QRKVVWDQVTHDLTAQGILTAYGD 102
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
+P VA + + DR LD R+ D +++R +V + + + + +V
Sbjct 103 PHPEVAAMVDALSRADRTLDCRW---WRRDVGGKMVRFVVCRKGDRHVVAARDDDMLVLQ 159
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFS-LPTRVG-ARADERL-RSGVP 182
R A + AM + ++G G PA + + L + AR+ E+L R G P
Sbjct 160 RVAPQIGLAAM-------VNVVIGAG----APANVEPLTGLAAELAEARSAEQLGRYGQP 208
Query 183 LGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNR-DGRHTTTEVGLSIVDTSAGRVL 241
P SA+ E+ S P S+VEI A G ++ VG ++D+S GR++
Sbjct 209 ----------PHSAKIYAEASAS-PDSWVEITANERHPGGTYSQAGVGAGVLDSSHGRIV 257
Query 242 VSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
P R +G+ +F PGTP + A+ L LP WF
Sbjct 258 SIPRR-VNGDLYGSFLPGTPENLQRALDGLIEFLPSATWF 296
>gi|120401098|ref|YP_950927.1| hypothetical protein Mvan_0070 [Mycobacterium vanbaalenii PYR-1]
gi|119953916|gb|ABM10921.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=283
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/279 (28%), Positives = 125/279 (45%), Gaps = 32/279 (11%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D IA+ + FP L I +PY D QR D+ +LT G+L+ G
Sbjct 20 VEVTIDGMLVIADLLHLVDFPLSLGIRPNIPYED--QRKIVWDQVTRDLTAQGILTAYGD 77
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
+P VA + + PDR LD R+ D +++R +V + + + + +V
Sbjct 78 PHPEVAAMVDALSRPDRTLDCRW---WRRDLGGKMVRFVVCRKGDRHVVAARDEDMLVLQ 134
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFS-LPTRVG-ARADERLRSGVPL 183
R A + AM +GV + P A + + + T++ AR E++ +
Sbjct 135 RVAPQIGLAAM-----------VGVVIGGAPAADVEPLTGIATKLAEARTAEQIGA---- 179
Query 184 GEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNR-DGRHTTTEVGLSIVDTSAGRVLV 242
Y P SA+ E+ + P S+VEI A G ++ VG ++D++ GR++
Sbjct 180 -----YGQPPLSAKIYAEAT-ANPDSWVEITAAERHPGGTYSQAGVGAGVLDSAHGRIVS 233
Query 243 SPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
P R GE +F PGT + A+ L LP WF
Sbjct 234 IP-RQVGGELYGSFLPGTQENLQRALDGLVEFLPSRAWF 271
>gi|118472873|ref|YP_884475.1| hypothetical protein MSMEG_0057 [Mycobacterium smegmatis str.
MC2 155]
gi|118174160|gb|ABK75056.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=282
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/275 (26%), Positives = 117/275 (43%), Gaps = 24/275 (8%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVIN 67
VE+T+D IA+ +G FP + I + R ++ +L+ G+L G +
Sbjct 20 VEVTIDGMLVIADKLGLTDFPPSMGIRLNIPQPDLRKVVWEQVERDLSAQGVLDVYGNPH 79
Query 68 PAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALRN 127
P VA + + DR L+ R+ D +++R +V + G + + + +V R
Sbjct 80 PEVAAMVDTLARADRTLECRW---WRRDAGGKMIRFVVCRKGGRHVVAARDNDLLVLQRV 136
Query 128 AQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGEVV 187
A + M ++ +LG G PA + + +RL E+
Sbjct 137 APQIGLAGM-------VMTVLGEG----SPANVEPLT-------GVADRLAQCRTAEELT 178
Query 188 DYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSPSR 246
Y GIP ++ S+ S P +VEIVA G T+ +V ++D GR++ P R
Sbjct 179 GY-GIPPTSARAYASIISEPDGWVEIVANERHPGGTTSQVDVAAGVLDAKQGRIVSIPRR 237
Query 247 AFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
+GE +F GT + A++ L LP WF
Sbjct 238 -VNGELYGSFLSGTKDNLERALEGLVEFLPSKTWF 271
>gi|108797043|ref|YP_637240.1| hypothetical protein Mmcs_0062 [Mycobacterium sp. MCS]
gi|119866128|ref|YP_936080.1| hypothetical protein Mkms_0071 [Mycobacterium sp. KMS]
gi|108767462|gb|ABG06184.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692217|gb|ABL89290.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=282
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/278 (28%), Positives = 118/278 (43%), Gaps = 28/278 (10%)
Query 7 AVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVI 66
AVE+T+D IA+ + A FP L I + R D+ +LT G+L+ G
Sbjct 19 AVEVTIDGMLVIADRMSASDFPPSLGIRLNIPQPDLRKIVWDQVARDLTEQGVLNFYGDP 78
Query 67 NPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALR 126
+P VA + + DR L+ R+ D +++R +V K VVA R
Sbjct 79 HPEVAAMVDTLSRSDRVLEGRW---WRRDLGGKMVRFVVC---------RKGDRHVVAAR 126
Query 127 NAQLVTFT--AMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
+ +++ A I + +LG PPA + T V A +L
Sbjct 127 DDEMLVLQRIAPQIGLANMVTTVLGTA----PPADVEPL---TGVAA----KLAQCRTAN 175
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNR-DGRHTTTEVGLSIVDTSAGRVLVS 243
E+ Y GI ++ + S P S+VE+ A G TTT+V ++D+ GR++
Sbjct 176 ELQAY-GIALTSARAYADIISEPASWVELTATERHPGGTQTTTDVAAGVLDSPHGRIVSI 234
Query 244 PSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
P R GE +F PGT + A+ L LP WF
Sbjct 235 PRR-VSGELYGSFLPGTQENLQRALDGLVDFLPSKTWF 271
>gi|126432665|ref|YP_001068356.1| hypothetical protein Mjls_0052 [Mycobacterium sp. JLS]
gi|126232465|gb|ABN95865.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=282
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/278 (28%), Positives = 118/278 (43%), Gaps = 28/278 (10%)
Query 7 AVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVI 66
AVE+T+D IA+ + A FP L I + R D+ +LT G+L+ G
Sbjct 19 AVEVTIDGMLVIADRMSASDFPPSLGIRLNIPQPDLRKIVWDQVARDLTEQGVLNFYGDP 78
Query 67 NPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALR 126
+P VA + + DR L+ R+ D +++R +V K VVA R
Sbjct 79 HPEVAAMVDTLSRSDRVLEGRW---WRRDLGGKMVRFVVC---------RKGDRHVVAAR 126
Query 127 NAQLVTFT--AMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLG 184
+ +++ A I + +LG PPA + T V A +L
Sbjct 127 DDEMLVLQRIAPQIGLANMVTTVLGTA----PPADVEPL---TGVAA----KLAQCRTAN 175
Query 185 EVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNR-DGRHTTTEVGLSIVDTSAGRVLVS 243
E+ Y GI ++ + S P S+VE+ A G TTT+V ++D+ GR++
Sbjct 176 ELQAY-GIALTSARAYADIISEPASWVELTATERHPGGTQTTTDVAAGVLDSPHGRIVSI 234
Query 244 PSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
P R GE +F PGT + A+ L LP WF
Sbjct 235 PRR-VSGELYGSFLPGTQENLQRALDGLVDFLPSKTWF 271
>gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 [Mycobacterium marinum M]
gi|183178738|gb|ACC43848.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=279
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/279 (28%), Positives = 123/279 (45%), Gaps = 32/279 (11%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D IA+ + FP L I +P D R D+ +LT G+L G
Sbjct 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--REIVWDQVARDLTAQGVLDHNGQ 76
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
+PAVA + + DR L+ R+ D ++R +V K V+A+
Sbjct 77 PHPAVAAMVDTLSRADRTLEGRW---WRRDVGGVMVRFVVC---------RKGERHVIAV 124
Query 126 RNAQLVTFTAMDIDDPR-ALVPILGVGLAHRPPARFDEFS-LPTRVGARADERLRSGVPL 183
R+ ++ + + PR L ++ L PA + + + + +G +
Sbjct 125 RDGDMLV---LQLVAPRVGLAGMVTAVLGTAEPANVEPLTGIASELGECTNA-------- 173
Query 184 GEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLV 242
++ Y P +AR E + + P+S+VEIVA G TT T+ ++D++ GR LV
Sbjct 174 AQLTRYGLTPTTARLYTE-IVTNPKSWVEIVASERHPGGTTTHTKAAAGVLDSAHGR-LV 231
Query 243 SPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
S R GE +F PGT + A+ +L LP G W
Sbjct 232 SLPRQVGGELYGSFLPGTEQNLQRALDSLLELLPSGSWL 270
>gi|317506950|ref|ZP_07964720.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC
BAA-974]
gi|316254758|gb|EFV14058.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC
BAA-974]
Length=274
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/282 (26%), Positives = 120/282 (43%), Gaps = 20/282 (7%)
Query 7 AVELTVDNAWFIAETIGAGTFPWVLAITMP-YSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
AV L V ++ + + P VLA Y D QR +EL G+L +
Sbjct 8 AVALHVSTLEYVRKLAKTESLPTVLACYQGFYMDPEQRSKEWKLMNEELNEKGILRGE-T 66
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
++P + W++ + P+R L R + +LR + R T + + G+ VV
Sbjct 67 VHPELQLWLEALDHPERELSGRIKRQET------MLRMALVRRGRTHALAIRYGDEVVIQ 120
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
+A + P ++ +LG G+ F+ S PT+ + R + L
Sbjct 121 DFEYEAEKSAGQLAKP--VLAVLGEGVV----PDFNRVSAPTQSIVDSMPR---NIDLDA 171
Query 186 V-VDYLGIPASAR--PVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLV 242
V L + AS + V+ ++ + E V +G + +SI D+ GR +
Sbjct 172 VFTSLLRVGASQKDAKVLATIMANVEVQSEFVVHEREEGPRVRGKGAVSIFDSPKGRFVS 231
Query 243 SPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQ 284
SPS A DGE STF+PGT I+ A +L LP +W+P +
Sbjct 232 SPSVAGDGEIWSTFTPGTDHRISQAFTSLIELLPSEKWWPQE 273
>gi|296393779|ref|YP_003658663.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
gi|296180926|gb|ADG97832.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
Length=274
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/282 (29%), Positives = 117/282 (42%), Gaps = 24/282 (8%)
Query 7 AVELTVDNAWFIAETIGAGTFPWVLAITMP-YSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
AV L V ++ + + P VLA Y D QR D EL G+L + V
Sbjct 8 AVALHVSTLEYVRKLAKTESVPTVLACYQGFYVDVEQRRKEWDLMNAELNEKGILRGEAV 67
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
+P + W++ + PDR L R S +LR + R + + G+ VV
Sbjct 68 -HPELQAWLEALDHPDRELSGRVKRGES------MLRMALVRRGDVHALAIRYGDEVVI- 119
Query 126 RNAQLVTFTAMDIDDP--RALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPL 183
Q + A RA + +LG G+ F+ S PT+ A R V L
Sbjct 120 ---QNFEYDAQKSSGQLARAALVVLGEGVI----PDFNRVSAPTQSIVDAMPR---NVDL 169
Query 184 GEV-VDYLGIPASAR--PVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRV 240
V L + AS + V+ ++ + E V DG + +S+ D+ GR
Sbjct 170 DAVYTSLLRVGASQKDAKVLATIMATVEVQSEFVVYERGDGPRARGKGAVSVFDSPKGRF 229
Query 241 LVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFP 282
+ SPS A DGE ST +PGT I+ A +L LP QW+P
Sbjct 230 VSSPSVASDGEIWSTMTPGTDHRISQAFNSLIELLPSEQWWP 271
>gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881 [Mycobacterium canettii CIPT
140010059]
gi|340007028|emb|CCC46219.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=283
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/277 (28%), Positives = 115/277 (42%), Gaps = 28/277 (10%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D IA+ + FP L I +P D R ++ + +LT G+L G
Sbjct 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDVHGE 76
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
P VA+ ++ + PDR L+ R+ D ++R +V R + + G+ +V
Sbjct 77 PQPTVAEMVETLGRPDRTLEGRW---WRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 133
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
A V M + +LG PA T V E + +
Sbjct 134 LVAPQVGLAGM-------VTAVLG-------PAEPANVEPLTGVATELAECTTAS----Q 175
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSP 244
+ Y PASAR V + P +VEIVA G TT T+ ++D+ GR LVS
Sbjct 176 LTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSL 233
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
R G+ +F PGT + A+ L LP G W
Sbjct 234 PRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
>gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837 [Mycobacterium tuberculosis
210]
Length=268
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/277 (28%), Positives = 115/277 (42%), Gaps = 28/277 (10%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D IA+ + FP L I +P D R ++ + +LT G+L G
Sbjct 4 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDLHGE 61
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
P VA+ ++ + PDR L+ R+ D ++R +V R + + G+ +V
Sbjct 62 PQPTVAEMVETLGRPDRTLEGRW---WRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 118
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
A V M + +LG PA T V E + +
Sbjct 119 LVAPQVGLAGM-------VTAVLG-------PAEPANVEPLTGVATELAECTTAS----Q 160
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSP 244
+ Y PASAR V + P +VEIVA G TT T+ ++D+ GR LVS
Sbjct 161 LTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSL 218
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
R G+ +F PGT + A+ L LP G W
Sbjct 219 PRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 255
>gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 [Mycobacterium tuberculosis SUMu001]
gi|308369263|ref|ZP_07417096.2| hypothetical protein TMBG_02406 [Mycobacterium tuberculosis SUMu002]
gi|308371485|ref|ZP_07425109.2| hypothetical protein TMCG_01376 [Mycobacterium tuberculosis SUMu003]
21 more sequence titles
Length=285
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/277 (28%), Positives = 115/277 (42%), Gaps = 28/277 (10%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D IA+ + FP L I +P D R ++ + +LT G+L G
Sbjct 21 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDLHGE 78
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
P VA+ ++ + PDR L+ R+ D ++R +V R + + G+ +V
Sbjct 79 PQPTVAEMVETLGRPDRTLEGRW---WRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 135
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
A V M + +LG PA T V E + +
Sbjct 136 LVAPQVGLAGM-------VTAVLG-------PAEPANVEPLTGVATELAECTTAS----Q 177
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSP 244
+ Y PASAR V + P +VEIVA G TT T+ ++D+ GR LVS
Sbjct 178 LTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSL 235
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
R G+ +F PGT + A+ L LP G W
Sbjct 236 PRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 272
>gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycobacterium tuberculosis H37Rv]
gi|31795040|ref|NP_857533.1| hypothetical protein Mb3896 [Mycobacterium bovis AF2122/97]
gi|121639784|ref|YP_980008.1| hypothetical protein BCG_3929 [Mycobacterium bovis BCG str. Pasteur
1173P2]
50 more sequence titles
Length=283
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/277 (28%), Positives = 115/277 (42%), Gaps = 28/277 (10%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D IA+ + FP L I +P D R ++ + +LT G+L G
Sbjct 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDLHGE 76
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
P VA+ ++ + PDR L+ R+ D ++R +V R + + G+ +V
Sbjct 77 PQPTVAEMVETLGRPDRTLEGRW---WRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 133
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
A V M + +LG PA T V E + +
Sbjct 134 LVAPQVGLAGM-------VTAVLG-------PAEPANVEPLTGVATELAECTTAS----Q 175
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSP 244
+ Y PASAR V + P +VEIVA G TT T+ ++D+ GR LVS
Sbjct 176 LTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSL 233
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
R G+ +F PGT + A+ L LP G W
Sbjct 234 PRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
>gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298497134|gb|EFI32428.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=283
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/277 (28%), Positives = 114/277 (42%), Gaps = 28/277 (10%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
VE+T+D IA+ + FP L I +P D R ++ + +LT G+L G
Sbjct 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDLHGE 76
Query 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
P VA+ ++ + PDR L+ R+ D ++R +V R + + G+ +V
Sbjct 77 PQPTVAEMVETLGRPDRTLEGRW---WRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 133
Query 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
A V M + +LG PA T V E + +
Sbjct 134 LVAPQVGLAGM-------VTAVLG-------PAEPANVEPLTGVATELAECTTAS----Q 175
Query 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSP 244
+ Y PASAR V + P +VE VA G TT T+ ++D+ GR LVS
Sbjct 176 LTQYGIAPASAR-VYAEIVGNPTGWVETVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSL 233
Query 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
R G+ +F PGT + A+ L LP G W
Sbjct 234 PRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
>gi|54022099|ref|YP_116341.1| hypothetical protein nfa1350 [Nocardia farcinica IFM 10152]
gi|54013607|dbj|BAD54977.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=266
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/279 (25%), Positives = 105/279 (38%), Gaps = 28/279 (10%)
Query 8 VELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVIN 67
V L +D F+ E + P VL Y + A A + + L LL GV++
Sbjct 5 VTLALDEMQFLLEKLEFDELPVVLQAVGRYDNQADHDAAMQVAENSLVERDLLI-DGVVH 63
Query 68 PAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALRN 127
+ D ++ + P L LR V C + VVALR
Sbjct 64 RELEDRLRTLYRPHWVLALRLVVEGQVSRMC---------------LAQGDDMAVVALRG 108
Query 128 AQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGA----RADERLRSGVPL 183
Q +D D P LV LG P + + T + A A + + L
Sbjct 109 PQSYVVDEVDEDLPGPLVAALGSA----EPLELESMNAQTELLAPIFGDAGDSAATANRL 164
Query 184 GEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVS 243
+V PA + S RS+ +I DG + +++ DT GR++++
Sbjct 165 AKVCQ----PARDVQTLASALVEIRSHTQISGVVYGDGIRDIADSHVAVFDTRGGRIVLT 220
Query 244 PSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFP 282
S A DG ++ S GT + AIQ L LP+ + FP
Sbjct 221 ASVADDGTKWTSISSGTTARLRTAIQDLIDSLPEREKFP 259
>gi|111021019|ref|YP_703991.1| hypothetical protein RHA1_ro04036 [Rhodococcus jostii RHA1]
gi|110820549|gb|ABG95833.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=284
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/275 (27%), Positives = 117/275 (43%), Gaps = 38/275 (13%)
Query 7 AVELTVDNAWFIAETIGAGTFPWVLAITMPYS-----DAAQRGAFVDRQRDELTRMGLLS 61
AV L++D ++ +T+ VL Y DAA RGA D L LL
Sbjct 15 AVTLSLDEMDYLVDTLALDVLTVVLDAIPRYDTYDARDAAFRGAV-----DTLAARDLL- 68
Query 62 PQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRG----IVALRTGTGKTSNK 117
P G ++P + D ++V+ P + LR+ S C + RG ++ALR G
Sbjct 69 PGGGVHPELVDRLRVLARPLWEIALRWYVDGSISRLC-ISRGETLSVLALRAGDTYVVQD 127
Query 118 TGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERL 177
G + A A+ DP + VG+ + P + E +
Sbjct 128 AGADIFA------PVIGALGAADP------MNVGVVNAPTVQLGEVF----------DHG 165
Query 178 RSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSA 237
G L + LG+ A+ V+ + + +Y EIV DGR+ +++ DTSA
Sbjct 166 GDGKSLAAALTALGVTAADATVLGNGMAACTTYAEIVGIVYGDGRYDPVGGPVTVFDTSA 225
Query 238 GRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLT 272
GR++ + S + G S+ SPGTP + A+++LT
Sbjct 226 GRIVGTSSVSAHGVAWSSLSPGTPQRLRQALESLT 260
>gi|312137677|ref|YP_004005013.1| hypothetical protein REQ_01740 [Rhodococcus equi 103S]
gi|311887016|emb|CBH46325.1| hypothetical protein REQ_01740 [Rhodococcus equi 103S]
Length=261
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/259 (25%), Positives = 101/259 (39%), Gaps = 34/259 (13%)
Query 10 LTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVINPA 69
LTVD + + P VL + R A DR LT GLL G ++P
Sbjct 15 LTVDELDLLVHLLDVDVLPVVLDAGSRFDSVPARDAAFDRAHATLTTAGLLD-GGSVHPD 73
Query 70 VADWIKVVCFPDRWLDLRYVGPASADGACELLR---GIVALRTGTGKTSNKTGNGVVALR 126
+A W++V+ P + R + C ++ALR+G T + +
Sbjct 74 LARWLRVLARPRGEIAARRFAAGTIARLCLAFDDDGAVLALRSGDSLTLKHVQHDLAGPV 133
Query 127 NAQLVTFTAMDIDDPRALVPILGVGLAHRPP----ARFDEFSLPTRVGARADERLRSGVP 182
L T A L G+ +RP A D + P R A
Sbjct 134 AQALGTADA------------LAFGVVNRPTEMLGAALDRLADPDRAAAE---------- 171
Query 183 LGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLV 242
+ +G+PA+ ++ +G + EIV + DGR +++ DT+AGR++
Sbjct 172 ----LAGIGVPAADAAMIGPALAGCPVFTEIVGIVHEDGRPDLMHGPVTVFDTAAGRIVG 227
Query 243 SPSRAFDGEWVSTFSPGTP 261
+ S A DG ++ SPG P
Sbjct 228 TTSIAADGSRWTSLSPGHP 246
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 489554810128
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40