BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0307c
Length=160
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607448|ref|NP_214821.1| hypothetical protein Rv0307c [Mycob... 321 2e-86
gi|240172739|ref|ZP_04751398.1| hypothetical protein MkanA1_2571... 263 7e-69
gi|183980585|ref|YP_001848876.1| hypothetical protein MMAR_0557 ... 244 3e-63
gi|118616935|ref|YP_905267.1| hypothetical protein MUL_1221 [Myc... 242 2e-62
gi|296167652|ref|ZP_06849923.1| conserved hypothetical protein [... 230 4e-59
gi|41409892|ref|NP_962728.1| hypothetical protein MAP3794c [Myco... 223 6e-57
gi|342859217|ref|ZP_08715871.1| hypothetical protein MCOL_10073 ... 223 8e-57
gi|254821594|ref|ZP_05226595.1| hypothetical protein MintA_16792... 222 1e-56
gi|118464560|ref|YP_883978.1| hypothetical protein MAV_4856 [Myc... 214 3e-54
gi|120401453|ref|YP_951282.1| hypothetical protein Mvan_0428 [My... 210 6e-53
gi|145220917|ref|YP_001131595.1| hypothetical protein Mflv_0313 ... 207 3e-52
gi|118471895|ref|YP_885042.1| hypothetical protein MSMEG_0632 [M... 184 4e-45
gi|126432993|ref|YP_001068684.1| hypothetical protein Mjls_0380 ... 180 7e-44
gi|108797372|ref|YP_637569.1| hypothetical protein Mmcs_0392 [My... 179 9e-44
gi|300870458|ref|YP_003785329.1| hypothetical protein BP951000_0... 40.8 0.059
gi|296126166|ref|YP_003633418.1| hypothetical protein Bmur_1124 ... 39.7 0.14
gi|158520235|ref|YP_001528105.1| hypothetical protein Dole_0218 ... 39.3 0.18
gi|328724303|ref|XP_003248096.1| PREDICTED: hypothetical protein... 38.9 0.28
gi|224370466|ref|YP_002604630.1| hypothetical protein HRM2_33910... 37.4 0.72
gi|339411664|gb|AEJ61229.1| flagellar biosynthesis protein FlhA ... 36.2 1.8
gi|283457569|ref|YP_003362152.1| preprotein translocase subunit ... 35.4 2.5
gi|336116768|ref|YP_004571535.1| preprotein translocase SecY sub... 35.4 3.2
gi|240170509|ref|ZP_04749168.1| hypothetical protein MkanA1_1444... 35.0 3.4
gi|307718618|ref|YP_003874150.1| hypothetical protein STHERM_c09... 35.0 3.7
gi|239918180|ref|YP_002957738.1| protein translocase subunit sec... 34.3 7.1
gi|297623237|ref|YP_003704671.1| hypothetical protein Trad_1000 ... 33.9 7.1
gi|281415630|ref|ZP_06247372.1| protein translocase subunit secY... 33.9 8.6
>gi|15607448|ref|NP_214821.1| hypothetical protein Rv0307c [Mycobacterium tuberculosis H37Rv]
gi|15839691|ref|NP_334728.1| hypothetical protein MT0320 [Mycobacterium tuberculosis CDC1551]
gi|31791486|ref|NP_853979.1| hypothetical protein Mb0315c [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=160
Score = 321 bits (823), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL
Sbjct 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL
Sbjct 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP
Sbjct 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
>gi|240172739|ref|ZP_04751398.1| hypothetical protein MkanA1_25717 [Mycobacterium kansasii ATCC
12478]
Length=160
Score = 263 bits (672), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 132/160 (83%), Positives = 140/160 (88%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAVI R+ FG+G+LPADLR Q+EAEGLIYL EYVAVTRRFTG IPGLRASHSIASY GAL
Sbjct 1 MAVIFRRMFGIGKLPADLRDQLEAEGLIYLEEYVAVTRRFTGAIPGLRASHSIASYPGAL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
AFTEQRVLGTLS +PKLAGR VD RWD PQ GAATAEIS TGLQLDLDVA VDP+F GQL
Sbjct 61 AFTEQRVLGTLSSLPKLAGRAVDVRWDAPQTGAATAEISSTGLQLDLDVAKVDPRFHGQL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LHFK IGEDVL+RLP RSLAFDVP EYV AVGVTYSP
Sbjct 121 SLHFKTDIGEDVLARLPLRSLAFDVPPEYVFRAVGVTYSP 160
>gi|183980585|ref|YP_001848876.1| hypothetical protein MMAR_0557 [Mycobacterium marinum M]
gi|183173911|gb|ACC39021.1| conserved protein [Mycobacterium marinum M]
Length=160
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/160 (75%), Positives = 135/160 (85%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAVI+R+ FG+G+L D R QVEAEGLIYL EYV VTRRFTG IPG+RASHS+ASY GAL
Sbjct 1 MAVIIRRLFGIGKLSEDFRAQVEAEGLIYLEEYVPVTRRFTGTIPGVRASHSVASYPGAL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
AFT +RVLGTLS +PKLAGR +D RWD P +GAATAEIS TG+Q+D+DVA VDP+F G L
Sbjct 61 AFTHERVLGTLSSLPKLAGRAIDVRWDAPHSGAATAEISSTGVQVDIDVAKVDPRFHGDL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LHFKA I EDVL+RLP RSLAFDVP EYV AVGVTYSP
Sbjct 121 SLHFKADIPEDVLARLPLRSLAFDVPPEYVFRAVGVTYSP 160
>gi|118616935|ref|YP_905267.1| hypothetical protein MUL_1221 [Mycobacterium ulcerans Agy99]
gi|118569045|gb|ABL03796.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=160
Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/160 (74%), Positives = 134/160 (84%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
M VI+R+ FG+G+L D R QVEAEGLIYL EYV VTRRFTG IPG+RASHS+ASY GAL
Sbjct 1 MTVIIRRLFGIGKLSEDFRAQVEAEGLIYLEEYVPVTRRFTGTIPGVRASHSVASYPGAL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
AFT++RVLGTLS +PKLAGR +D RWD P +GAAT EIS TG+Q+D+DVA VDP+F G L
Sbjct 61 AFTQERVLGTLSSLPKLAGRAIDVRWDAPHSGAATVEISSTGVQVDIDVAKVDPRFHGDL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LHFKA I EDVL+RLP RSLAFDVP EYV AVGVTYSP
Sbjct 121 SLHFKADIPEDVLARLPLRSLAFDVPPEYVFRAVGVTYSP 160
>gi|296167652|ref|ZP_06849923.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897119|gb|EFG76731.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=160
Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 132/160 (83%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV VR+ FG+G+LP D+ QVEAEGL+YLA+YVAVTRRF+G IPG+R HS+ASY G+L
Sbjct 1 MAVFVRRLFGIGKLPDDVHAQVEAEGLLYLADYVAVTRRFSGAIPGVRLPHSVASYTGSL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
FT +RVL TLSM+P+LAG VD RWD PQ GAA EIS TGLQ+D+DVA V+PKFSG+L
Sbjct 61 VFTAERVLATLSMLPRLAGPTVDVRWDAPQTGAARVEISSTGLQVDVDVARVNPKFSGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LH+KA I DVL LPRRSLAFD+PAEYV AVGVTYSP
Sbjct 121 SLHYKAAIPADVLGCLPRRSLAFDMPAEYVYRAVGVTYSP 160
>gi|41409892|ref|NP_962728.1| hypothetical protein MAP3794c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254777295|ref|ZP_05218811.1| hypothetical protein MaviaA2_21861 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398725|gb|AAS06344.1| hypothetical protein MAP_3794c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460246|gb|EGO39149.1| hypothetical protein MAPs_42740 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=160
Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/160 (69%), Positives = 128/160 (80%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV VR+ FG+G+LP DL QVEAEGLIYLA+YVAVTRRF+G IPG+R HS+ASY G+L
Sbjct 1 MAVFVRRLFGIGKLPDDLHAQVEAEGLIYLADYVAVTRRFSGTIPGVRLPHSVASYTGSL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
FT +RVL TLSM+P+LAG V+ WD PQ GAA EIS TGLQ+D+DV+ VD KFSG+L
Sbjct 61 VFTSERVLATLSMLPRLAGPTVNVAWDAPQTGAAQVEISSTGLQVDVDVSRVDEKFSGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LH+K I DVLS LPR SLAFD+P EYV AVGVTYSP
Sbjct 121 SLHYKVAIPADVLSGLPRHSLAFDMPPEYVFRAVGVTYSP 160
>gi|342859217|ref|ZP_08715871.1| hypothetical protein MCOL_10073 [Mycobacterium colombiense CECT
3035]
gi|342133458|gb|EGT86661.1| hypothetical protein MCOL_10073 [Mycobacterium colombiense CECT
3035]
Length=160
Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 105/160 (66%), Positives = 131/160 (82%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV VR+ FG+G+LP +L Q+E+EG+ YLA+YVAVTRRF+G IPG+R HS+ASY G+L
Sbjct 1 MAVFVRRLFGIGKLPDELHAQLESEGITYLADYVAVTRRFSGTIPGVRLPHSVASYTGSL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
FT +RVL TLSM+P+LAG V+ RW+ PQ GAA EISPTGLQ+D+DV+ VD KFSG+L
Sbjct 61 VFTSERVLATLSMLPRLAGPTVNVRWNAPQTGAAQVEISPTGLQVDVDVSRVDEKFSGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LH+K I +DVLS LPRRSLAFD+P +YV AVGVTYSP
Sbjct 121 SLHYKVAIPDDVLSGLPRRSLAFDMPPDYVFRAVGVTYSP 160
>gi|254821594|ref|ZP_05226595.1| hypothetical protein MintA_16792 [Mycobacterium intracellulare
ATCC 13950]
Length=160
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/160 (67%), Positives = 128/160 (80%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV VR+ FG+G+LP +L QVE+EGLIYLA+YVAVTRRF+G IPG+R H +ASY G+L
Sbjct 1 MAVFVRRLFGIGKLPDELHAQVESEGLIYLADYVAVTRRFSGTIPGVRLPHGVASYTGSL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
AFT +RVL TLSM+P+LAG V RWD PQ GAA EIS TGLQ+D+DV+ VD KFSG+L
Sbjct 61 AFTSERVLATLSMLPRLAGPTVSVRWDAPQTGAANVEISSTGLQVDVDVSAVDQKFSGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LH+K I +VL LPRRSLAFD+P EYV AVGVTYSP
Sbjct 121 SLHYKVAIPAEVLDTLPRRSLAFDMPPEYVFRAVGVTYSP 160
>gi|118464560|ref|YP_883978.1| hypothetical protein MAV_4856 [Mycobacterium avium 104]
gi|118165847|gb|ABK66744.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=153
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/152 (69%), Positives = 122/152 (81%), Gaps = 0/152 (0%)
Query 9 FGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGALAFTEQRVL 68
FG+G+LP DL QVEAEGLIYLA+YVAVTRRF+G IPG+R HS+ASY G+L FT +RVL
Sbjct 2 FGIGKLPDDLHAQVEAEGLIYLADYVAVTRRFSGTIPGVRLPHSVASYTGSLVFTSERVL 61
Query 69 GTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQLALHFKATI 128
TLSM+P+LAG V+ WD PQ GAA EIS TGLQ+D+DV+ VD KFSG+L+LH+K I
Sbjct 62 ATLSMLPRLAGPTVNVAWDAPQTGAAQVEISSTGLQVDVDVSRVDEKFSGELSLHYKVAI 121
Query 129 GEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
DVLS LPR SLAFD+P EYV AVGVTYSP
Sbjct 122 PADVLSGLPRHSLAFDMPPEYVFRAVGVTYSP 153
>gi|120401453|ref|YP_951282.1| hypothetical protein Mvan_0428 [Mycobacterium vanbaalenii PYR-1]
gi|119954271|gb|ABM11276.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=160
Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 102/160 (64%), Positives = 126/160 (79%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV +RK F +G+LP+ LR +VEAEG+++L+EYVAVTRRF G +PGLR++ SIASYVG+L
Sbjct 1 MAVFLRKLFRIGKLPSALRAEVEAEGVLFLSEYVAVTRRFRGAVPGLRSAGSIASYVGSL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
T +RVLGTLS VPKLAGR +D RWD PQ GA AE+S TGL LD+D+ VDP+FSG+L
Sbjct 61 VLTNERVLGTLSSVPKLAGRTIDLRWDAPQTGAVKAELSETGLTLDVDLDAVDPRFSGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LH+K I DVL+ LPR SLAFD P EY+ AVGV Y P
Sbjct 121 SLHYKEHIPADVLALLPRTSLAFDPPPEYIFRAVGVAYHP 160
>gi|145220917|ref|YP_001131595.1| hypothetical protein Mflv_0313 [Mycobacterium gilvum PYR-GCK]
gi|315442112|ref|YP_004074991.1| hypothetical protein Mspyr1_04440 [Mycobacterium sp. Spyr1]
gi|145213403|gb|ABP42807.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315260415|gb|ADT97156.1| hypothetical protein Mspyr1_04440 [Mycobacterium sp. Spyr1]
Length=160
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/160 (63%), Positives = 125/160 (79%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV +RK F +G+LP+ LR +VEAEG+++++EYVAVTRRF G +PGLR+ SIASYVG+L
Sbjct 1 MAVFLRKLFRIGKLPSALRAEVEAEGVLFMSEYVAVTRRFRGTVPGLRSGGSIASYVGSL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
T +RVLGTLS VPKLAGR +D RWD PQ G+ AE+S TGL LD+DV+ VDP+ SG+L
Sbjct 61 VLTNERVLGTLSTVPKLAGRTIDQRWDAPQTGSVKAELSETGLTLDVDVSAVDPRCSGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
+LH+K I DVL+RLPR SLAFD E+V AVGV Y P
Sbjct 121 SLHYKEDIPRDVLARLPRTSLAFDASPEFVFRAVGVPYHP 160
>gi|118471895|ref|YP_885042.1| hypothetical protein MSMEG_0632 [Mycobacterium smegmatis str.
MC2 155]
gi|118173182|gb|ABK74078.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=164
Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/164 (58%), Positives = 117/164 (72%), Gaps = 4/164 (2%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MA+ +RK +G LP LR + EAEG+++LAEYV VTRRF+G IPG RA++S++SY G++
Sbjct 1 MALFLRKLLRIGELPDALRAEAEAEGVLFLAEYVPVTRRFSGAIPGKRAANSVSSYAGSV 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVD----PKF 116
TEQR L TL+ +PKLAGR VD W PQ GA TAE+S GL ++ D+A VD F
Sbjct 61 MLTEQRALATLATLPKLAGRTVDQPWSAPQNGAVTAELSAHGLVIEADLARVDGHRYGHF 120
Query 117 SGQLALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
G L+LH+K I EDVL+RLPRRSLAFDV EYV AVGV Y P
Sbjct 121 EGHLSLHYKVAIPEDVLARLPRRSLAFDVGPEYVFRAVGVQYHP 164
>gi|126432993|ref|YP_001068684.1| hypothetical protein Mjls_0380 [Mycobacterium sp. JLS]
gi|126232793|gb|ABN96193.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=160
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 113/160 (71%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV +RK +GRLP ++R Q EAEG+++L+E+V VTRRFTG IPG RAS S++ Y GAL
Sbjct 1 MAVFLRKLLRIGRLPDEMRAQSEAEGILHLSEFVPVTRRFTGSIPGKRASGSVSGYTGAL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
T +RVL TLS VP LAGR +D RWD P G EI+P GL ++DV VDP+ G+L
Sbjct 61 VLTRERVLATLSTVPGLAGRTIDQRWDTPADGPVGVEIAPDGLHFEVDVHRVDPRSHGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
++H+K+ I +DVL+ LP RSL VP E+V AVGV Y P
Sbjct 121 SMHYKSDIPDDVLAVLPTRSLQISVPPEWVFRAVGVPYRP 160
>gi|108797372|ref|YP_637569.1| hypothetical protein Mmcs_0392 [Mycobacterium sp. MCS]
gi|119866456|ref|YP_936408.1| hypothetical protein Mkms_0401 [Mycobacterium sp. KMS]
gi|108767791|gb|ABG06513.1| hypothetical protein Mmcs_0392 [Mycobacterium sp. MCS]
gi|119692545|gb|ABL89618.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=160
Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 113/160 (71%), Gaps = 0/160 (0%)
Query 1 MAVIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVAVTRRFTGVIPGLRASHSIASYVGAL 60
MAV +RK +GRLP ++R Q EAEG+++L+E+V VTRRFTG IPG RAS S++ Y GAL
Sbjct 1 MAVFLRKLLRIGRLPDEMRAQSEAEGILHLSEFVPVTRRFTGSIPGKRASGSVSGYTGAL 60
Query 61 AFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQL 120
T +RVL TLS VP LAGR +D RWD P G EI+P GL ++DV VDP+ G+L
Sbjct 61 VLTRERVLATLSTVPGLAGRTIDQRWDTPADGPVGVEIAPDGLHFEVDVHRVDPRSHGEL 120
Query 121 ALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGVTYSP 160
++H+K+ I +DVL+ LP RSL VP E+V AVGV Y P
Sbjct 121 SMHYKSDIPDDVLAVLPTRSLRISVPPEWVFRAVGVPYRP 160
>gi|300870458|ref|YP_003785329.1| hypothetical protein BP951000_0830 [Brachyspira pilosicoli 95/1000]
gi|300688157|gb|ADK30828.1| hypothetical protein BP951000_0830 [Brachyspira pilosicoli 95/1000]
Length=156
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/89 (29%), Positives = 47/89 (53%), Gaps = 10/89 (11%)
Query 53 IASYVGALAFTEQRVLGTLSMVPKLAGRV-----VDARWDGPQAGAATAEISPTGLQLDL 107
+ SYV +L+ TE+ ++ + ++AGRV V+++WD Q AE+ GL+ +
Sbjct 68 VGSYVESLSSTEKGMIDEYVIQERVAGRVRGVSIVESKWDSKQNCTVVAELYSKGLKKQM 127
Query 108 DVADVDPKFSGQLALHFKATIGEDVLSRL 136
D + K+ ++ + + A EDV R+
Sbjct 128 DT--LISKYLQEVGMQYTA---EDVAGRI 151
>gi|296126166|ref|YP_003633418.1| hypothetical protein Bmur_1124 [Brachyspira murdochii DSM 12563]
gi|296017982|gb|ADG71219.1| protein of unknown function DUF400 [Brachyspira murdochii DSM
12563]
Length=164
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (26%), Positives = 44/83 (54%), Gaps = 7/83 (8%)
Query 49 ASHSIASYVGALAFTEQRVLGTLSMVPKLAGR-----VVDARWDGPQAGAATAEISPTGL 103
A+ + SY+ +L+ TE+ ++ + ++AGR VV+++WD Q E+ GL
Sbjct 73 AAKIVGSYIESLSSTEKGMIDEYVIQERVAGRVRGLSVVESKWDSKQNCTVVMELYSKGL 132
Query 104 QLDLDVADVDPKFSGQLALHFKA 126
+ +D D+ K+ ++ + + A
Sbjct 133 KSQID--DLVAKYLNEVGMQYTA 153
>gi|158520235|ref|YP_001528105.1| hypothetical protein Dole_0218 [Desulfococcus oleovorans Hxd3]
gi|158509061|gb|ABW66028.1| hypothetical protein Dole_0218 [Desulfococcus oleovorans Hxd3]
Length=148
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/137 (28%), Positives = 60/137 (44%), Gaps = 14/137 (10%)
Query 7 KWFGLGRLPADLRCQVEAEGLIYLAEYVA---VTRRFTGVIPGLRASHSIASYVGALAFT 63
+ F LG +P LR ++E+EG++ E +A V + G PG R + + G LA T
Sbjct 8 RLFRLGAIPKKLRPELESEGIVVADEGMAGRFVAKNVKG--PGRRYRGRVELFSGCLAVT 65
Query 64 EQRVLGTLSMVPKLAGRVVDARWDGPQAGAATAEI-SPTGLQLDLDVADVDPKFSGQLAL 122
++RV R + D P+ ++ +P L + + AD + G LA
Sbjct 66 QKRV-----ACFTYGKRQIHIAADDPKLSDLFVDVPAPDTLLISFEAADFRDDWRGVLAF 120
Query 123 HFKATIGE---DVLSRL 136
FK DVL+ L
Sbjct 121 RFKTQKARRFFDVLTAL 137
>gi|328724303|ref|XP_003248096.1| PREDICTED: hypothetical protein LOC100568780 [Acyrthosiphon pisum]
Length=859
Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 26/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query 70 TLSMVPKLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQLALHFKATIG 129
T+S V +L R+ + W P +G + A ++ +D V P+F+ + L KA +
Sbjct 486 TVSCVNRLGLRLTN--WTAPISGLSGAAVADVQGTVD---CVVQPRFATEPQLKTKAWVM 540
Query 130 EDVLSRLPRRSLAFDVPAEYVNLAVG 155
+ S +PRRSL V + NLA+
Sbjct 541 PSITSNMPRRSLDTGVKDRFANLALA 566
>gi|224370466|ref|YP_002604630.1| hypothetical protein HRM2_33910 [Desulfobacterium autotrophicum
HRM2]
gi|223693183|gb|ACN16466.1| hypothetical protein HRM2_33910 [Desulfobacterium autotrophicum
HRM2]
Length=162
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 36/69 (53%), Gaps = 5/69 (7%)
Query 3 VIVRKWFGLGRLPADLRCQVEAEGLIYLAEYVA---VTRRFTGVIPGLRASHSIASYVGA 59
I+ + FG+G +P LR ++ EG++ + E + V + G PG R H + G
Sbjct 4 TILYRLFGIGSVPEKLRPVLDREGVVAIDEGIGGWFVAKHVNG--PGKRYCHRTEGFSGC 61
Query 60 LAFTEQRVL 68
LA T+ RV+
Sbjct 62 LAVTKTRVV 70
>gi|339411664|gb|AEJ61229.1| flagellar biosynthesis protein FlhA [Spirochaeta thermophila
DSM 6578]
Length=694
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/85 (33%), Positives = 41/85 (49%), Gaps = 4/85 (4%)
Query 18 LRCQVEAEGLIYLAEYVAVTRRFTGVIPGL--RASHSIASYVGALAFTEQRVLGTLSMVP 75
LR QV L+ + E +A R T + L +A +IA + A E RVL L++ P
Sbjct 542 LREQVSIRNLVSILETIADYARMTKDVTFLIEKARQAIARQICAQYTDEHRVLRVLTLDP 601
Query 76 KLAGRVVDARWDGPQAGAATAEISP 100
L ++DAR + AG A + P
Sbjct 602 ALEQMIIDARVE--TAGGIVAALEP 624
>gi|283457569|ref|YP_003362152.1| preprotein translocase subunit SecY [Rothia mucilaginosa DY-18]
gi|283133567|dbj|BAI64332.1| preprotein translocase subunit SecY [Rothia mucilaginosa DY-18]
Length=435
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/88 (31%), Positives = 42/88 (48%), Gaps = 20/88 (22%)
Query 33 YVAVT----------RRFTGVIPGLRASHSIASYVGALAFTEQRV-------LGTLSMVP 75
YVAVT +++ G IPG+RA A Y L++ R+ LG +SM+P
Sbjct 331 YVAVTFDPVEVADNMKKYGGFIPGIRAGKPTARY---LSYVLNRITLPGALYLGVISMIP 387
Query 76 KLAGRVVDARWDGPQAGAATAEISPTGL 103
+A + +A + P GA+ + GL
Sbjct 388 LVALILFNANQNFPFGGASLLIVVGVGL 415
>gi|336116768|ref|YP_004571535.1| preprotein translocase SecY subunit [Microlunatus phosphovorus
NM-1]
gi|334684547|dbj|BAK34132.1| preprotein translocase SecY subunit [Microlunatus phosphovorus
NM-1]
Length=435
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/85 (30%), Positives = 38/85 (45%), Gaps = 14/85 (16%)
Query 33 YVAVT----------RRFTGVIPGLRASHSIASYVGA----LAFTEQRVLGTLSMVPKLA 78
YVA+T +++ G IPG+RA Y+ L F LG L+++P +A
Sbjct 331 YVAITFNPEEVADNMKKYGGFIPGIRAGKPTEQYLAYVLSRLTFPGSMYLGILALLPSVA 390
Query 79 GRVVDARWDGPQAGAATAEISPTGL 103
+DA + P G + I GL
Sbjct 391 FIFLDANQNFPFGGTSILIIVGVGL 415
>gi|240170509|ref|ZP_04749168.1| hypothetical protein MkanA1_14445 [Mycobacterium kansasii ATCC
12478]
Length=106
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)
Query 120 LALHFKATIGEDVLSRLPRRSLAFDVPAEYVNLAVGV 156
L++++K I E VLS +PRRS F V ++V AVGV
Sbjct 64 LSINYKTAIPEAVLSTIPRRSPQFAVARQWVLRAVGV 100
>gi|307718618|ref|YP_003874150.1| hypothetical protein STHERM_c09300 [Spirochaeta thermophila DSM
6192]
gi|306532343|gb|ADN01877.1| hypothetical protein STHERM_c09300 [Spirochaeta thermophila DSM
6192]
Length=694
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/85 (32%), Positives = 40/85 (48%), Gaps = 4/85 (4%)
Query 18 LRCQVEAEGLIYLAEYVAVTRRFTGVIPGL--RASHSIASYVGALAFTEQRVLGTLSMVP 75
LR QV L+ + E +A R T + L +A +IA + A E RVL L++ P
Sbjct 542 LREQVSIRNLVSILETIADYARMTKDVTFLIEKARQAIARQICAQYTDEHRVLRVLTLDP 601
Query 76 KLAGRVVDARWDGPQAGAATAEISP 100
L ++DAR + AG + P
Sbjct 602 ALEQMIIDARVE--TAGGVVTALEP 624
>gi|239918180|ref|YP_002957738.1| protein translocase subunit secY/sec61 alpha [Micrococcus luteus
NCTC 2665]
gi|239839387|gb|ACS31184.1| protein translocase subunit secY/sec61 alpha [Micrococcus luteus
NCTC 2665]
Length=435
Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/71 (29%), Positives = 33/71 (47%), Gaps = 4/71 (5%)
Query 38 RRFTGVIPGLRASHSIASY----VGALAFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGA 93
+R+ G IPG+RA Y + + F LG ++M+P +A V+ + P G
Sbjct 346 KRYGGFIPGVRAGRPTERYLQYVISRITFVGALYLGIVAMIPLIAFAVIGTSQNFPLGGT 405
Query 94 ATAEISPTGLQ 104
+ + GLQ
Sbjct 406 SILIMVGVGLQ 416
>gi|297623237|ref|YP_003704671.1| hypothetical protein Trad_1000 [Truepera radiovictrix DSM 17093]
gi|297164417|gb|ADI14128.1| protein of unknown function DUF490 [Truepera radiovictrix DSM
17093]
Length=3080
Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/46 (42%), Positives = 29/46 (64%), Gaps = 10/46 (21%)
Query 76 KLAGRVVDARWDGPQAGAATAEISPTGLQLDLDVADVDPKFSGQLA 121
+L+GR ARWDGP+ +A L+LD ++D+DP + G+LA
Sbjct 1530 QLSGR---ARWDGPRGASAA-------LELDARLSDLDPAWRGRLA 1565
>gi|281415630|ref|ZP_06247372.1| protein translocase subunit secY/sec61 alpha [Micrococcus luteus
NCTC 2665]
Length=435
Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/71 (29%), Positives = 33/71 (47%), Gaps = 4/71 (5%)
Query 38 RRFTGVIPGLRASHSIASY----VGALAFTEQRVLGTLSMVPKLAGRVVDARWDGPQAGA 93
+R+ G IPG+RA Y + + F LG ++M+P +A V+ + P G
Sbjct 346 KRYGGFIPGVRAGRPTERYLQYVISRITFVGALYLGIVAMIPLIAFPVIGTSQNFPLGGT 405
Query 94 ATAEISPTGLQ 104
+ + GLQ
Sbjct 406 SILIMVGVGLQ 416
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127750398496
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40