BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0320

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607461|ref|NP_214834.1|  hypothetical protein Rv0320 [Mycoba...   443    9e-123
gi|340625351|ref|YP_004743803.1|  hypothetical protein MCAN_03221...   442    1e-122
gi|167967760|ref|ZP_02550037.1|  hypothetical protein MtubH3_0686...   396    1e-108
gi|41409917|ref|NP_962753.1|  hypothetical protein MAP3819 [Mycob...   263    2e-68 
gi|336460215|gb|EGO39118.1|  hypothetical protein MAPs_42420 [Myc...   257    9e-67 
gi|145222264|ref|YP_001132942.1|  hypothetical protein Mflv_1672 ...   256    2e-66 
gi|120406029|ref|YP_955858.1|  hypothetical protein Mvan_5081 [My...   252    2e-65 
gi|183980625|ref|YP_001848916.1|  hypothetical protein MMAR_0599 ...   250    9e-65 
gi|240172281|ref|ZP_04750940.1|  hypothetical protein MkanA1_2340...   247    9e-64 
gi|118616384|ref|YP_904716.1|  hypothetical protein MUL_0559 [Myc...   245    4e-63 
gi|118469520|ref|YP_885061.1|  hypothetical protein MSMEG_0651 [M...   232    4e-59 
gi|254821496|ref|ZP_05226497.1|  hypothetical protein MintA_16300...   227    1e-57 
gi|118465825|ref|YP_883954.1|  hypothetical protein MAV_4829 [Myc...   218    6e-55 
gi|254777267|ref|ZP_05218783.1|  hypothetical protein MaviaA2_217...   218    6e-55 
gi|296167770|ref|ZP_06849965.1|  NLP/P60 family protein [Mycobact...   213    2e-53 
gi|333990719|ref|YP_004523333.1|  hypothetical protein JDM601_207...   209    3e-52 
gi|126433015|ref|YP_001068706.1|  hypothetical protein Mjls_0402 ...   205    4e-51 
gi|108797394|ref|YP_637591.1|  hypothetical protein Mmcs_0414 [My...   205    4e-51 
gi|342859182|ref|ZP_08715836.1|  hypothetical protein MCOL_09898 ...   203    1e-50 
gi|333990033|ref|YP_004522647.1|  hypothetical protein JDM601_139...   183    2e-44 
gi|108802315|ref|YP_642512.1|  hypothetical protein Mmcs_5355 [My...   166    2e-39 
gi|126438297|ref|YP_001073988.1|  hypothetical protein Mjls_5734 ...   166    3e-39 
gi|118469760|ref|YP_891025.1|  NLP/P60 family protein [Mycobacter...   165    5e-39 
gi|315441930|ref|YP_004074809.1|  hypothetical protein Mspyr1_025...   160    1e-37 
gi|145221108|ref|YP_001131786.1|  hypothetical protein Mflv_0505 ...   160    2e-37 
gi|120406864|ref|YP_956693.1|  hypothetical protein Mvan_5924 [My...   157    1e-36 
gi|120404193|ref|YP_954022.1|  hypothetical protein Mvan_3215 [My...   155    3e-36 
gi|254231921|ref|ZP_04925248.1|  conserved hypothetical protein [...   154    7e-36 
gi|340626733|ref|YP_004745185.1|  hypothetical protein MCAN_17391...   154    7e-36 
gi|308231913|ref|ZP_07414252.2|  hypothetical protein TMAG_01563 ...   154    8e-36 
gi|15841190|ref|NP_336227.1|  hypothetical protein MT1769 [Mycoba...   154    8e-36 
gi|15608866|ref|NP_216244.1|  hypothetical protein Rv1728c [Mycob...   154    9e-36 
gi|108799870|ref|YP_640067.1|  hypothetical protein Mmcs_2904 [My...   152    5e-35 
gi|118618549|ref|YP_906881.1|  hypothetical protein MUL_3192 [Myc...   149    2e-34 
gi|118470551|ref|YP_888015.1|  hypothetical protein MSMEG_3714 [M...   149    3e-34 
gi|183982579|ref|YP_001850870.1|  hypothetical protein MMAR_2569 ...   148    6e-34 
gi|145224042|ref|YP_001134720.1|  hypothetical protein Mflv_3457 ...   145    3e-33 
gi|108802504|ref|YP_642700.1|  hypothetical protein Mmcs_5544 [My...   140    9e-32 
gi|119855147|ref|YP_935752.1|  hypothetical protein Mkms_5762 [My...   140    2e-31 
gi|296170201|ref|ZP_06851795.1|  NLP/P60 family protein [Mycobact...   139    2e-31 
gi|333990517|ref|YP_004523131.1|  hypothetical protein JDM601_187...   139    3e-31 
gi|254821278|ref|ZP_05226279.1|  hypothetical protein MintA_15172...   135    4e-30 
gi|254774325|ref|ZP_05215841.1|  hypothetical protein MaviaA2_066...   132    3e-29 
gi|41408573|ref|NP_961409.1|  hypothetical protein MAP2475 [Mycob...   132    3e-29 
gi|342858050|ref|ZP_08714706.1|  hypothetical protein MCOL_04210 ...   132    3e-29 
gi|336460922|gb|EGO39805.1|  hypothetical protein MAPs_35880 [Myc...   130    1e-28 
gi|289757836|ref|ZP_06517214.1|  conserved hypothetical protein [...   124    8e-27 
gi|40445368|ref|NP_954828.1|  M24/M37 family peptidase [Gordonia ...   100    2e-19 
gi|262118176|ref|YP_003275946.1|  Transglycosylase domain protein...  99.4    3e-19 
gi|108802505|ref|YP_642701.1|  hypothetical protein Mmcs_5545 [My...  98.6    6e-19 


>gi|15607461|ref|NP_214834.1| hypothetical protein Rv0320 [Mycobacterium tuberculosis H37Rv]
 gi|15839707|ref|NP_334744.1| hypothetical protein MT0335 [Mycobacterium tuberculosis CDC1551]
 gi|31791499|ref|NP_853992.1| hypothetical protein Mb0328 [Mycobacterium bovis AF2122/97]
 72 more sequence titles
 
gi|121636235|ref|YP_976458.1| hypothetical protein BCG_0360 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148660086|ref|YP_001281609.1| hypothetical protein MRA_0329 [Mycobacterium tuberculosis H37Ra]
 gi|148821516|ref|YP_001286270.1| hypothetical protein TBFG_10325 [Mycobacterium tuberculosis F11]
 gi|224988708|ref|YP_002643395.1| hypothetical protein JTY_0330 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797246|ref|YP_003030247.1| hypothetical protein TBMG_00324 [Mycobacterium tuberculosis KZN 
1435]
 gi|254230686|ref|ZP_04924013.1| hypothetical exported protein [Mycobacterium tuberculosis C]
 gi|254363289|ref|ZP_04979335.1| hypothetical exported protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254549265|ref|ZP_05139712.1| hypothetical protein Mtube_02176 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289441700|ref|ZP_06431444.1| hypothetical exported protein [Mycobacterium tuberculosis T46]
 gi|289445860|ref|ZP_06435604.1| hypothetical exported protein [Mycobacterium tuberculosis CPHL_A]
 gi|289552573|ref|ZP_06441783.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 
605]
 gi|289568232|ref|ZP_06448459.1| hypothetical exported protein [Mycobacterium tuberculosis T17]
 gi|289572907|ref|ZP_06453134.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289748090|ref|ZP_06507468.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748804|ref|ZP_06508182.1| hypothetical exported protein [Mycobacterium tuberculosis T92]
 gi|289752351|ref|ZP_06511729.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289756385|ref|ZP_06515763.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289760429|ref|ZP_06519807.1| hypothetical exported protein [Mycobacterium tuberculosis GM 
1503]
 gi|294995077|ref|ZP_06800768.1| hypothetical protein Mtub2_11330 [Mycobacterium tuberculosis 
210]
 gi|297632807|ref|ZP_06950587.1| hypothetical protein MtubK4_01711 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297729782|ref|ZP_06958900.1| hypothetical protein MtubKR_01741 [Mycobacterium tuberculosis 
KZN R506]
 gi|298523798|ref|ZP_07011207.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306774415|ref|ZP_07412752.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu001]
 gi|306779161|ref|ZP_07417498.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu002]
 gi|306782948|ref|ZP_07421270.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu003]
 gi|306787316|ref|ZP_07425638.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu004]
 gi|306791869|ref|ZP_07430171.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu005]
 gi|306796055|ref|ZP_07434357.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu006]
 gi|306801915|ref|ZP_07438583.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu008]
 gi|306806126|ref|ZP_07442794.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu007]
 gi|306966324|ref|ZP_07478985.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu009]
 gi|307078247|ref|ZP_07487417.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu011]
 gi|307082801|ref|ZP_07491914.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu012]
 gi|313657111|ref|ZP_07813991.1| hypothetical protein MtubKV_01741 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630394|ref|YP_004722036.1| hypothetical protein MAF_03220 [Mycobacterium africanum GM041182]
 gi|2193941|emb|CAB09604.1| POSSIBLE CONSERVED EXPORTED PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|13879831|gb|AAK44558.1| hypothetical protein MT0335 [Mycobacterium tuberculosis CDC1551]
 gi|31617085|emb|CAD93192.1| POSSIBLE CONSERVED EXPORTED PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491882|emb|CAL70345.1| Possible conserved exported protein [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|124599745|gb|EAY58755.1| hypothetical exported protein [Mycobacterium tuberculosis C]
 gi|134148803|gb|EBA40848.1| hypothetical exported protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504238|gb|ABQ72047.1| putative conserved exported protein [Mycobacterium tuberculosis 
H37Ra]
 gi|148720043|gb|ABR04668.1| hypothetical exported protein [Mycobacterium tuberculosis F11]
 gi|224771821|dbj|BAH24627.1| hypothetical protein JTY_0330 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253318749|gb|ACT23352.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289414619|gb|EFD11859.1| hypothetical exported protein [Mycobacterium tuberculosis T46]
 gi|289418818|gb|EFD16019.1| hypothetical exported protein [Mycobacterium tuberculosis CPHL_A]
 gi|289437205|gb|EFD19698.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 
605]
 gi|289537338|gb|EFD41916.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289541985|gb|EFD45634.1| hypothetical exported protein [Mycobacterium tuberculosis T17]
 gi|289688618|gb|EFD56106.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689391|gb|EFD56820.1| hypothetical exported protein [Mycobacterium tuberculosis T92]
 gi|289692938|gb|EFD60367.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289707935|gb|EFD71951.1| hypothetical exported protein [Mycobacterium tuberculosis GM 
1503]
 gi|289711949|gb|EFD75961.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298493592|gb|EFI28886.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308217009|gb|EFO76408.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu001]
 gi|308327871|gb|EFP16722.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu002]
 gi|308332226|gb|EFP21077.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu003]
 gi|308335993|gb|EFP24844.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu004]
 gi|308339613|gb|EFP28464.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu005]
 gi|308343521|gb|EFP32372.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu006]
 gi|308347382|gb|EFP36233.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu007]
 gi|308351309|gb|EFP40160.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu008]
 gi|308355957|gb|EFP44808.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu009]
 gi|308363816|gb|EFP52667.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu011]
 gi|308367467|gb|EFP56318.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu012]
 gi|326906074|gb|EGE53007.1| hypothetical exported protein [Mycobacterium tuberculosis W-148]
 gi|328457033|gb|AEB02456.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339329750|emb|CCC25394.1| putative conserved exported protein [Mycobacterium africanum 
GM041182]
 gi|341600251|emb|CCC62921.1| possible conserved exported protein [Mycobacterium bovis BCG 
str. Moreau RDJ]
 gi|344218140|gb|AEM98770.1| hypothetical protein MTCTRI2_0327 [Mycobacterium tuberculosis 
CTRI-2]
Length=220

 Score =  443 bits (1139),  Expect = 9e-123, Method: Compositional matrix adjust.
 Identities = 219/220 (99%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            +GRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV
Sbjct  1    MGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
            APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA
Sbjct  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI
Sbjct  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180

Query  181  WRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            WRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR
Sbjct  181  WRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220


>gi|340625351|ref|YP_004743803.1| hypothetical protein MCAN_03221 [Mycobacterium canettii CIPT 
140010059]
 gi|340003541|emb|CCC42662.1| putative conserved exported protein [Mycobacterium canettii CIPT 
140010059]
Length=220

 Score =  442 bits (1138),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 218/220 (99%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            +GRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV
Sbjct  1    MGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
            APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA
Sbjct  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAF+LKNATRFGMQDVI
Sbjct  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFILKNATRFGMQDVI  180

Query  181  WRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            WRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR
Sbjct  181  WRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220


>gi|167967760|ref|ZP_02550037.1| hypothetical protein MtubH3_06868 [Mycobacterium tuberculosis 
H37Ra]
 gi|308378603|ref|ZP_07483180.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu010]
 gi|308359914|gb|EFP48765.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu010]
 gi|323721269|gb|EGB30326.1| hypothetical protein TMMG_03996 [Mycobacterium tuberculosis CDC1551A]
 gi|339293377|gb|AEJ45488.1| hypothetical protein CCDC5079_0298 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297022|gb|AEJ49132.1| hypothetical protein CCDC5180_0295 [Mycobacterium tuberculosis 
CCDC5180]
Length=195

 Score =  396 bits (1017),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  26   VFFATGGDVSTLAARADANPVLGDDAPCCVQIVPVAPLAFSSQISGGEIGTGLAASQFAS  85
            +FFATGGDVSTLAARADANPVLGDDAPCCVQIVPVAPLAFSSQISGGEIGTGLAASQFAS
Sbjct  1    MFFATGGDVSTLAARADANPVLGDDAPCCVQIVPVAPLAFSSQISGGEIGTGLAASQFAS  60

Query  86   ASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALD  145
            ASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALD
Sbjct  61   ASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALD  120

Query  146  VMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHIT  205
            VMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHIT
Sbjct  121  VMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHIT  180

Query  206  TVGGGYPTGEELYIR  220
            TVGGGYPTGEELYIR
Sbjct  181  TVGGGYPTGEELYIR  195


>gi|41409917|ref|NP_962753.1| hypothetical protein MAP3819 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398750|gb|AAS06369.1| hypothetical protein MAP_3819 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=211

 Score =  263 bits (671),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 140/220 (64%), Positives = 172/220 (79%), Gaps = 9/220 (4%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            +GRH LAR RRK SA LAAVLAPAAVFFA   DV   A R  A PV+ + APCC +IV +
Sbjct  1    MGRHALARKRRKPSATLAAVLAPAAVFFAVSADVHPFAERETAKPVINEPAPCCAEIVTL  60

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
            A    S+++S G  G G    Q  +ASR+   SR+LP GVAPE+GLQV+T+LTARSISA 
Sbjct  61   A----STRLSKG-FGDG----QPVAASRYHTRSRFLPAGVAPERGLQVRTILTARSISAE  111

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FP+I EIGGVRPD L WHP G+A+DVM+P+P +A+GIALGN IVA+VL+NA RFG+QD I
Sbjct  112  FPQIHEIGGVRPDPLPWHPLGMAIDVMIPDPESAQGIALGNAIVAYVLQNADRFGIQDAI  171

Query  181  WRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            WRG YYTPNGA+T+  GHYDH+H+TT+GGGYPTG+E+Y+R
Sbjct  172  WRGVYYTPNGAQTSRLGHYDHVHVTTIGGGYPTGDEVYLR  211


>gi|336460215|gb|EGO39118.1| hypothetical protein MAPs_42420 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=192

 Score =  257 bits (656),  Expect = 9e-67, Method: Compositional matrix adjust.
 Identities = 125/201 (63%), Positives = 157/201 (79%), Gaps = 9/201 (4%)

Query  20   VLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPVAPLAFSSQISGGEIGTGLA  79
            +LAPAAVFFA   DV   A R  A PV+ + APCC +IV +A    S+++S G  G G  
Sbjct  1    MLAPAAVFFAVSADVHPFAERETAKPVINEPAPCCAEIVTLA----STRLSKG-FGDG--  53

Query  80   ASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHP  139
              Q  +ASR+   SR+LP GVAPE+GLQV+T+LTARSISA FP+I EIGGVRPD L WHP
Sbjct  54   --QPVAASRYHTRSRFLPAGVAPERGLQVRTILTARSISAEFPQIHEIGGVRPDPLPWHP  111

Query  140  NGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHY  199
             G+A+DVM+P+P +A+GIALGN IVA+VL+NA RFG+QD IWRG YYTPNGA+T+  GHY
Sbjct  112  LGMAIDVMIPDPESAQGIALGNAIVAYVLQNADRFGIQDAIWRGVYYTPNGAQTSRLGHY  171

Query  200  DHIHITTVGGGYPTGEELYIR  220
            DH+H+TT+GGGYPTG+E+Y+R
Sbjct  172  DHVHVTTIGGGYPTGDEVYLR  192


>gi|145222264|ref|YP_001132942.1| hypothetical protein Mflv_1672 [Mycobacterium gilvum PYR-GCK]
 gi|315442695|ref|YP_004075574.1| hypothetical protein Mspyr1_10500 [Mycobacterium sp. Spyr1]
 gi|145214750|gb|ABP44154.1| putative conserved exported protein [Mycobacterium gilvum PYR-GCK]
 gi|315260998|gb|ADT97739.1| hypothetical protein Mspyr1_10500 [Mycobacterium sp. Spyr1]
Length=234

 Score =  256 bits (653),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 126/230 (55%), Positives = 152/230 (67%), Gaps = 10/230 (4%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLG----------DD  50
            VGRH L + RR  S    + LAPAAVF A  GD + ++A   A                 
Sbjct  5    VGRHSLPKKRRNPSVYFVSALAPAAVFLAVKGDTNPVSASVAAEKEPVAAPAPPPVEEQA  64

Query  51   APCCVQIVPVAPLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKT  110
             PCCV+IV     +    +         + +   SASRWR+V R LP GVAPE+GLQV+T
Sbjct  65   TPCCVEIVAAPATSPQPALLTDPGSAATSPASLVSASRWRVVDRTLPAGVAPERGLQVRT  124

Query  111  VLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKN  170
            +LT+RSISA FPEI  IGGVR DALRWHPNGLALDVM+PNP +  GIALGN+IVA+VL N
Sbjct  125  ILTSRSISAVFPEINNIGGVRSDALRWHPNGLALDVMIPNPTSQAGIALGNQIVAYVLAN  184

Query  171  ATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            A RFG+QD IWRG YYTP GA++ G GHYDH+H+TT GGGYP G+E+Y R
Sbjct  185  AKRFGIQDAIWRGTYYTPGGAQSGGYGHYDHVHVTTTGGGYPDGDEVYYR  234


>gi|120406029|ref|YP_955858.1| hypothetical protein Mvan_5081 [Mycobacterium vanbaalenii PYR-1]
 gi|119958847|gb|ABM15852.1| putative conserved exported protein [Mycobacterium vanbaalenii 
PYR-1]
Length=232

 Score =  252 bits (644),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 131/229 (58%), Positives = 156/229 (69%), Gaps = 10/229 (4%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTL--------AARADANPVLGDDAP  52
            VGRH +A+ RR  S  + + LAPAAVF A   D S +         A     PV     P
Sbjct  5    VGRHSIAKKRRNPSVYVVSALAPAAVFLAVKADTSAIRVAVEEEPVAAPAPAPVEEQFVP  64

Query  53   CCVQIVPVAPLAFSSQISGGEIGTG-LAASQFASASRWRIVSRYLPVGVAPEQGLQVKTV  111
            CCV++V  AP +        + G   +  +   SASRWR+VSR LP GVAPE GLQV+T+
Sbjct  65   CCVEVV-AAPASGPGPARLTDDGVADVEPASLVSASRWRVVSRTLPAGVAPENGLQVRTI  123

Query  112  LTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNA  171
            LTARSISA FPEI  IGGVR DALRWHPNGLALDVM+PNP +  GIALGN+IVA+V+ NA
Sbjct  124  LTARSISAVFPEINNIGGVRQDALRWHPNGLALDVMIPNPTSQAGIALGNQIVAYVMANA  183

Query  172  TRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
             RFG+QD IWRGAYYTP GA+  G GHYDH+H+TT GGGYP G+E+Y R
Sbjct  184  ERFGIQDAIWRGAYYTPGGAKAGGYGHYDHVHVTTTGGGYPDGDEVYFR  232


>gi|183980625|ref|YP_001848916.1| hypothetical protein MMAR_0599 [Mycobacterium marinum M]
 gi|183173951|gb|ACC39061.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=222

 Score =  250 bits (639),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 150/222 (68%), Positives = 177/222 (80%), Gaps = 2/222 (0%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            +GRHELAR RRK S +LAAV+AP A FFA  GD++  +AR   + +   D  CCV+IV  
Sbjct  1    MGRHELARKRRKPSVLLAAVVAPVAAFFAVAGDIAPSSARDRIDQMAVGDGACCVEIVAA  60

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRI--VSRYLPVGVAPEQGLQVKTVLTARSIS  118
             P+  SS+IS G +G G AA QFA+ASR R+   +R LPVGVAPE+GLQVKT+L ARSIS
Sbjct  61   TPIELSSKISSGAVGMGFAAGQFAAASRLRVDRSARLLPVGVAPERGLQVKTILAARSIS  120

Query  119  AAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQD  178
            A FPEI EIGGVRPDALRWHPNGLALDVM+PNPG+AEGIALGNEIVA+VL NA RFGMQD
Sbjct  121  AVFPEIHEIGGVRPDALRWHPNGLALDVMIPNPGSAEGIALGNEIVAYVLANAERFGMQD  180

Query  179  VIWRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
             IWRG YYTP+GA  +  GHYDH+H+TT GGGYPTG+E+Y+R
Sbjct  181  AIWRGVYYTPSGATRSRLGHYDHVHVTTTGGGYPTGKEIYLR  222


>gi|240172281|ref|ZP_04750940.1| hypothetical protein MkanA1_23401 [Mycobacterium kansasii ATCC 
12478]
Length=189

 Score =  247 bits (630),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 132/191 (70%), Positives = 151/191 (80%), Gaps = 6/191 (3%)

Query  32   GDVSTLAARADANPVLGDDAPCCVQIVPVAPLAFSSQISGGEIGTGLAASQFASASRWRI  91
            GDV  L AR     V   D PCCV+IV   PLA  S++ G E G GL   QFA+ASRWR+
Sbjct  3    GDVGPLDARV----VDQGDGPCCVEIVAATPLALVSRMPGSEAGMGLGGGQFAAASRWRV  58

Query  92   --VSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVP  149
               SR LP G APEQGLQVKT+L ARS+SA FPEI EIGGVR DALRWHPNGLALDVM+P
Sbjct  59   DTRSRALPPGAAPEQGLQVKTILVARSLSALFPEIHEIGGVRADALRWHPNGLALDVMIP  118

Query  150  NPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTVGG  209
            +PG+A+GIALGN+IV +VL NA+RFG+QD IWRG YYTP GAR+TGAGHYDH+HITT GG
Sbjct  119  DPGSADGIALGNQIVGYVLLNASRFGIQDAIWRGVYYTPEGARSTGAGHYDHVHITTTGG  178

Query  210  GYPTGEELYIR  220
            GYPTGEE+Y+R
Sbjct  179  GYPTGEEIYLR  189


>gi|118616384|ref|YP_904716.1| hypothetical protein MUL_0559 [Mycobacterium ulcerans Agy99]
 gi|118568494|gb|ABL03245.1| conserved hypothetical secreted protein [Mycobacterium ulcerans 
Agy99]
Length=222

 Score =  245 bits (625),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 148/222 (67%), Positives = 173/222 (78%), Gaps = 2/222 (0%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            +GRH LAR RRK S + AAV+APAA FFA  GD+   +AR   + +   D  CCV+IV  
Sbjct  1    MGRHGLARKRRKPSVLRAAVVAPAAAFFAVAGDIGPSSARDRIDQMAVGDEACCVEIVAA  60

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRI--VSRYLPVGVAPEQGLQVKTVLTARSIS  118
             P+  SS+IS G +G G AA QFA+ASR R+   +R LPVGVAPE+GLQVKT+L ARSIS
Sbjct  61   TPIELSSKISSGAVGMGFAAGQFAAASRLRVDRSARLLPVGVAPERGLQVKTILAARSIS  120

Query  119  AAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQD  178
            A FPEI EIGGVRPDALRWHPNGLALDVM+PNPG+AEGIALGNEIVA+VL N  RFGMQD
Sbjct  121  AVFPEIHEIGGVRPDALRWHPNGLALDVMIPNPGSAEGIALGNEIVAYVLANTERFGMQD  180

Query  179  VIWRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
             IWRG YYTP GA  +  GHYDH+H+TT GGGYPTG+E+Y+R
Sbjct  181  AIWRGVYYTPTGATRSRLGHYDHVHVTTTGGGYPTGKEIYLR  222


>gi|118469520|ref|YP_885061.1| hypothetical protein MSMEG_0651 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170807|gb|ABK71703.1| putative conserved exported protein [Mycobacterium smegmatis 
str. MC2 155]
Length=226

 Score =  232 bits (591),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 133/227 (59%), Positives = 160/227 (71%), Gaps = 11/227 (4%)

Query  1    VGRHELARDRR-KSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVL---GDDAPCC-V  55
            VGRH LA  RR K SAV AAV+APAAVFFA GGDV+   A  D  P     G   P   +
Sbjct  4    VGRHSLASPRRRKPSAVAAAVIAPAAVFFAVGGDVNPFPAEPDIKPAAAPEGTGQPVPGM  63

Query  56   QIVPVAPLAFSSQISGGEIGTGLAASQFASASRWRIVS--RYLPVGVAPEQGLQVKTVLT  113
            +++   P A  S    G      A ++ A+ASRWR+++  + LP G APE GLQVKT+L 
Sbjct  64   ELIAAGPAANPSATPAGVS----AGAEPATASRWRVLNIPKLLPAGRAPESGLQVKTILA  119

Query  114  ARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATR  173
            ARS+SA FPEI++IGGVR D+LRWHPNGLALDVM+PNP +  GIALGNEIVA+ LKNA R
Sbjct  120  ARSVSADFPEIQQIGGVRADSLRWHPNGLALDVMIPNPSSPAGIALGNEIVAYALKNAER  179

Query  174  FGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            F +QD IWR  YYTP+GAR    GHYDH+HITT GGGYP+G E+Y+R
Sbjct  180  FALQDCIWRDTYYTPSGARKGSYGHYDHVHITTKGGGYPSGGEVYLR  226


>gi|254821496|ref|ZP_05226497.1| hypothetical protein MintA_16300 [Mycobacterium intracellulare 
ATCC 13950]
Length=197

 Score =  227 bits (578),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 119/194 (62%), Positives = 143/194 (74%), Gaps = 9/194 (4%)

Query  27   FFATGGDVSTLAARADANPVLGDDAPCCVQIVPVAPLAFSSQISGGEIGTGLAASQFASA  86
            FFA   DV   A    A PV+ + APCCVQIV  A    +  +  GE          A+A
Sbjct  13   FFAVSADVHPFAPHNQAKPVISEPAPCCVQIVTAASKRPAKALVDGEP---------AAA  63

Query  87   SRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDV  146
            SR+   SR+LP GVAPEQGLQV+T+L  RSISA FP+I EIGGVRPD+L WHP GLALDV
Sbjct  64   SRYHTRSRFLPAGVAPEQGLQVRTILVERSISAEFPQIHEIGGVRPDSLPWHPRGLALDV  123

Query  147  MVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITT  206
            M+PNPG+AEGIALGN IVA+V++NATRFG+QD IWRG YYTP GA+ +  GHYDH+H+TT
Sbjct  124  MIPNPGSAEGIALGNSIVAYVMQNATRFGIQDAIWRGVYYTPGGAQASRLGHYDHVHVTT  183

Query  207  VGGGYPTGEELYIR  220
             GGGYPTG+E+Y+R
Sbjct  184  TGGGYPTGDEVYLR  197


>gi|118465825|ref|YP_883954.1| hypothetical protein MAV_4829 [Mycobacterium avium 104]
 gi|118167112|gb|ABK68009.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=152

 Score =  218 bits (554),  Expect = 6e-55, Method: Compositional matrix adjust.
 Identities = 98/148 (67%), Positives = 123/148 (84%), Gaps = 0/148 (0%)

Query  73   EIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRP  132
             +  G    Q  +ASR+   SR+LP GVAPE+GLQV+T+LTARSISA FP+I EIGGVRP
Sbjct  5    RLSKGFGDGQPVAASRYHTRSRFLPAGVAPERGLQVRTILTARSISAEFPQIHEIGGVRP  64

Query  133  DALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGAR  192
            D L WHP G+A+DVM+P+P +A+GIALGN IVA+VL+NA RFG+QD IWRG YYTPNGA+
Sbjct  65   DPLPWHPLGMAIDVMIPDPESAQGIALGNAIVAYVLQNADRFGIQDAIWRGVYYTPNGAQ  124

Query  193  TTGAGHYDHIHITTVGGGYPTGEELYIR  220
            T+  GHYDH+H+TT+GGGYPTG+E+Y+R
Sbjct  125  TSRLGHYDHVHVTTIGGGYPTGDEVYLR  152


>gi|254777267|ref|ZP_05218783.1| hypothetical protein MaviaA2_21719 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=154

 Score =  218 bits (554),  Expect = 6e-55, Method: Compositional matrix adjust.
 Identities = 98/148 (67%), Positives = 123/148 (84%), Gaps = 0/148 (0%)

Query  73   EIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRP  132
             +  G    Q  +ASR+   SR+LP GVAPE+GLQV+T+LTARSISA FP+I EIGGVRP
Sbjct  7    RLSKGFGDGQPVAASRYHTRSRFLPAGVAPERGLQVRTILTARSISAEFPQIHEIGGVRP  66

Query  133  DALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGAR  192
            D L WHP G+A+DVM+P+P +A+GIALGN IVA+VL+NA RFG+QD IWRG YYTPNGA+
Sbjct  67   DPLPWHPLGMAIDVMIPDPESAQGIALGNAIVAYVLQNADRFGIQDAIWRGVYYTPNGAQ  126

Query  193  TTGAGHYDHIHITTVGGGYPTGEELYIR  220
            T+  GHYDH+H+TT+GGGYPTG+E+Y+R
Sbjct  127  TSRLGHYDHVHVTTIGGGYPTGDEVYLR  154


>gi|296167770|ref|ZP_06849965.1| NLP/P60 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897070|gb|EFG76686.1| NLP/P60 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=156

 Score =  213 bits (542),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 95/135 (71%), Positives = 115/135 (86%), Gaps = 0/135 (0%)

Query  85   SASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLAL  144
            +ASR+   SR+LP G+APEQGLQV+T+L +RSISA FP+I EIGGVRPDAL WHP GLAL
Sbjct  20   AASRYHTRSRFLPAGLAPEQGLQVRTILASRSISAKFPQIHEIGGVRPDALPWHPRGLAL  79

Query  145  DVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHI  204
            DVM+PNP +AEGIALGNEIVA+V+KNA RF +QD IWRG YYTP GA+ +  GHYDH+H+
Sbjct  80   DVMIPNPQSAEGIALGNEIVAYVMKNAKRFRIQDAIWRGVYYTPGGAQPSRLGHYDHVHV  139

Query  205  TTVGGGYPTGEELYI  219
            TT GGGYP G+E+Y+
Sbjct  140  TTTGGGYPKGDEMYL  154


>gi|333990719|ref|YP_004523333.1| hypothetical protein JDM601_2078 [Mycobacterium sp. JDM601]
 gi|333486686|gb|AEF36078.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=167

 Score =  209 bits (531),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 108/173 (63%), Positives = 133/173 (77%), Gaps = 11/173 (6%)

Query  49   DDAPCCVQIVPVAPLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQV  108
            DD+P  +Q+V  AP  +  Q S             A+ASR R+VSR+LP GVA E+GLQV
Sbjct  5    DDSPGGLQLV-AAPADYLRQGS---------PEGVAAASRMRMVSRFLPAGVASERGLQV  54

Query  109  KTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVL  168
            KT+L ARSIS AFP+I +IGGVR DALRWHPNGLALDVM+PNPG+A+GIALG+ IVA+V+
Sbjct  55   KTILAARSISDAFPQIHQIGGVRADALRWHPNGLALDVMIPNPGSADGIALGDAIVAYVM  114

Query  169  KNATRFGMQDVIWRGAYYTP-NGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            +NA RFG+QD IWRG YYTP  GA+  G GHYDH+H+TT GGGYP+G E+Y+R
Sbjct  115  ENADRFGLQDAIWRGMYYTPGGGAQRGGYGHYDHVHVTTTGGGYPSGSEVYLR  167


>gi|126433015|ref|YP_001068706.1| hypothetical protein Mjls_0402 [Mycobacterium sp. JLS]
 gi|126232815|gb|ABN96215.1| putative conserved exported protein [Mycobacterium sp. JLS]
Length=199

 Score =  205 bits (522),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 105/154 (69%), Positives = 126/154 (82%), Gaps = 4/154 (2%)

Query  71   GGEIGTGLAASQFASASRWRIVSRY----LPVGVAPEQGLQVKTVLTARSISAAFPEIRE  126
            GG     +A S+  S + W++ +R     LPVGVAPE+GLQVKT+L AR+ISA FPEI++
Sbjct  46   GGPADLKVAPSETVSVANWKVANRASYRALPVGVAPERGLQVKTILAARAISAVFPEIQQ  105

Query  127  IGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYY  186
            IGG+RPDALRWHPNGLA+DVM+PNPG+AEGIALGN+IVA+V+KNA RFGMQD IWRG YY
Sbjct  106  IGGMRPDALRWHPNGLAIDVMIPNPGSAEGIALGNQIVAYVIKNAERFGMQDAIWRGVYY  165

Query  187  TPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            TPNG R +G GH+DH+HITT GGGYPTG E Y R
Sbjct  166  TPNGPRGSGNGHFDHVHITTTGGGYPTGSETYFR  199


>gi|108797394|ref|YP_637591.1| hypothetical protein Mmcs_0414 [Mycobacterium sp. MCS]
 gi|119866478|ref|YP_936430.1| hypothetical protein Mkms_0423 [Mycobacterium sp. KMS]
 gi|108767813|gb|ABG06535.1| putative conserved exported protein [Mycobacterium sp. MCS]
 gi|119692567|gb|ABL89640.1| putative conserved exported protein [Mycobacterium sp. KMS]
Length=201

 Score =  205 bits (522),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 105/154 (69%), Positives = 126/154 (82%), Gaps = 4/154 (2%)

Query  71   GGEIGTGLAASQFASASRWRIVSRY----LPVGVAPEQGLQVKTVLTARSISAAFPEIRE  126
            GG     +A S+  S + W++ +R     LPVGVAPE+GLQVKT+L AR+ISA FPEI++
Sbjct  48   GGPADLKVAPSETVSVANWKVANRASYRALPVGVAPERGLQVKTILAARAISAVFPEIQQ  107

Query  127  IGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYY  186
            IGG+RPDALRWHPNGLA+DVM+PNPG+AEGIALGN+IVA+V+KNA RFGMQD IWRG YY
Sbjct  108  IGGMRPDALRWHPNGLAIDVMIPNPGSAEGIALGNQIVAYVIKNAERFGMQDAIWRGVYY  167

Query  187  TPNGARTTGAGHYDHIHITTVGGGYPTGEELYIR  220
            TPNG R +G GH+DH+HITT GGGYPTG E Y R
Sbjct  168  TPNGPRGSGNGHFDHVHITTTGGGYPTGSETYFR  201


>gi|342859182|ref|ZP_08715836.1| hypothetical protein MCOL_09898 [Mycobacterium colombiense CECT 
3035]
 gi|342133423|gb|EGT86626.1| hypothetical protein MCOL_09898 [Mycobacterium colombiense CECT 
3035]
Length=154

 Score =  203 bits (516),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 89/137 (65%), Positives = 114/137 (84%), Gaps = 0/137 (0%)

Query  84   ASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLA  143
            A+ASR+   +R+L   VAPE+G+Q++T+L ARSI+A FP+I E+GGVRPD L WHP GLA
Sbjct  18   AAASRYHTRARFLTADVAPERGMQIRTILVARSITADFPQIHEMGGVRPDPLPWHPLGLA  77

Query  144  LDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIH  203
            +DVM+PNPG+ EGIALGN IVA+V++NA RFG+QD IWRG YYTPNGA+ +  GHYDH+H
Sbjct  78   VDVMIPNPGSDEGIALGNAIVAYVMQNANRFGIQDAIWRGVYYTPNGAQASRLGHYDHVH  137

Query  204  ITTVGGGYPTGEELYIR  220
            +TT GGGYP G E+Y+R
Sbjct  138  VTTTGGGYPNGSEVYLR  154


>gi|333990033|ref|YP_004522647.1| hypothetical protein JDM601_1393 [Mycobacterium sp. JDM601]
 gi|333486001|gb|AEF35393.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=139

 Score =  183 bits (464),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 81/125 (65%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP G+A E+G+QVKT+L +RSIS AFP++  + GVRPD  RWHP+GLA+D+M+PNPG+ E
Sbjct  7    LPPGIANERGMQVKTILLSRSISEAFPQVHNMIGVRPDGQRWHPSGLAIDIMIPNPGSPE  66

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTVGGGYPTGE  215
            GIALG+EIVA+ L+NA RF +QD IWRG YYTP G    G GHYDH+HITT GGGYP G 
Sbjct  67   GIALGDEIVAYALRNAGRFALQDAIWRGTYYTPAGPSGGGNGHYDHVHITTFGGGYPNGS  126

Query  216  ELYIR  220
            E Y+R
Sbjct  127  EEYLR  131


>gi|108802315|ref|YP_642512.1| hypothetical protein Mmcs_5355 [Mycobacterium sp. MCS]
 gi|119871468|ref|YP_941420.1| hypothetical protein Mkms_5444 [Mycobacterium sp. KMS]
 gi|108772734|gb|ABG11456.1| hypothetical protein Mmcs_5355 [Mycobacterium sp. MCS]
 gi|119697557|gb|ABL94630.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=365

 Score =  166 bits (420),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 72/115 (63%), Positives = 91/115 (80%), Gaps = 0/115 (0%)

Query  92   VSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNP  151
            +   LP+GVA E GLQ  TVL AR++SA FP+I +I GVRPD+  WHP+GLA+D+M+PNP
Sbjct  247  IPEALPMGVASEAGLQPNTVLAARAVSARFPQIADIDGVRPDSKPWHPSGLAIDIMIPNP  306

Query  152  GTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITT  206
             + EGIALG+EI+AF + NA R G+QDVIWRG YYTP G + +G GHYDH+HITT
Sbjct  307  ESPEGIALGDEILAFAMANAARLGLQDVIWRGTYYTPAGPQASGYGHYDHVHITT  361


>gi|126438297|ref|YP_001073988.1| hypothetical protein Mjls_5734 [Mycobacterium sp. JLS]
 gi|126238097|gb|ABO01498.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=365

 Score =  166 bits (419),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 72/115 (63%), Positives = 91/115 (80%), Gaps = 0/115 (0%)

Query  92   VSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNP  151
            +   LP+GVA E GLQ  TVL AR++SA FP+I +I GVRPD+  WHP+GLA+D+M+PNP
Sbjct  247  IPEALPMGVASEAGLQPNTVLAARAVSARFPQIADIDGVRPDSKPWHPSGLAIDIMIPNP  306

Query  152  GTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITT  206
             + EGIALG+EI+AF + NA R G+QDVIWRG YYTP G + +G GHYDH+HITT
Sbjct  307  ESPEGIALGDEILAFAMANAARLGLQDVIWRGTYYTPAGPQASGYGHYDHVHITT  361


>gi|118469760|ref|YP_891025.1| NLP/P60 family protein [Mycobacterium smegmatis str. MC2 155]
 gi|118171047|gb|ABK71943.1| NLP/P60 family protein [Mycobacterium smegmatis str. MC2 155]
Length=365

 Score =  165 bits (417),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 74/116 (64%), Positives = 90/116 (78%), Gaps = 0/116 (0%)

Query  92   VSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNP  151
            +   LPVGVA E GLQ  TV  AR IS  +P+I EIGGVRPD+  WHP+GLA+DVM+PNP
Sbjct  248  IPEALPVGVANETGLQPATVYVARVISMRYPQIAEIGGVRPDSKPWHPSGLAIDVMIPNP  307

Query  152  GTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTV  207
             + EGIALGNEI  FVL NA RF +QDVIWRG YYTP+G + +G GH+DH+H+TT+
Sbjct  308  SSPEGIALGNEIRDFVLSNAGRFKLQDVIWRGTYYTPSGPQASGYGHFDHVHVTTL  363


>gi|315441930|ref|YP_004074809.1| hypothetical protein Mspyr1_02580 [Mycobacterium sp. Spyr1]
 gi|315260233|gb|ADT96974.1| hypothetical protein Mspyr1_02580 [Mycobacterium sp. Spyr1]
Length=364

 Score =  160 bits (404),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 68/116 (59%), Positives = 91/116 (79%), Gaps = 0/116 (0%)

Query  92   VSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNP  151
            +   LP+GVA E GLQ   +L AR++S  FP+I EIGGVRPD+  WHP+GLA+D+M+PN 
Sbjct  246  IPEALPMGVAVEAGLQPNAILAARAVSHQFPQIAEIGGVRPDSKPWHPSGLAIDIMIPNH  305

Query  152  GTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTV  207
            G+ EGIALG++I+A+ + NA RFG+QDVIWRG YYTP G + +G GH+DH+HIT +
Sbjct  306  GSPEGIALGDQIMAYAMANAARFGLQDVIWRGTYYTPAGPQASGYGHFDHVHITVM  361


>gi|145221108|ref|YP_001131786.1| hypothetical protein Mflv_0505 [Mycobacterium gilvum PYR-GCK]
 gi|145213594|gb|ABP42998.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=364

 Score =  160 bits (404),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 68/116 (59%), Positives = 91/116 (79%), Gaps = 0/116 (0%)

Query  92   VSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNP  151
            +   LP+GVA E GLQ   +L AR++S  FP+I EIGGVRPD+  WHP+GLA+D+M+PN 
Sbjct  246  IPEALPMGVAVEAGLQPNAILAARAVSHQFPQIAEIGGVRPDSKPWHPSGLAIDIMIPNH  305

Query  152  GTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHITTV  207
            G+ EGIALG++I+A+ + NA RFG+QDVIWRG YYTP G + +G GH+DH+HIT +
Sbjct  306  GSPEGIALGDQIMAYAMANAARFGLQDVIWRGTYYTPAGPQASGYGHFDHVHITVM  361


>gi|120406864|ref|YP_956693.1| hypothetical protein Mvan_5924 [Mycobacterium vanbaalenii PYR-1]
 gi|119959682|gb|ABM16687.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=370

 Score =  157 bits (397),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 67/110 (61%), Positives = 87/110 (80%), Gaps = 0/110 (0%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP+GVA E GLQ   +L AR++S  FP+I  IGGVRPD+  WHP+GLA+D+M+PN  + E
Sbjct  256  LPMGVASEVGLQPNAILAARAVSRQFPQIANIGGVRPDSKPWHPSGLAIDIMIPNSDSPE  315

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGAGHYDHIHIT  205
            GIALG++I+A+ + NA RFG+QDVIWRG YYTP G + +G GHYDH+HIT
Sbjct  316  GIALGDQIMAYAMANAARFGLQDVIWRGTYYTPAGPQGSGYGHYDHVHIT  365


>gi|120404193|ref|YP_954022.1| hypothetical protein Mvan_3215 [Mycobacterium vanbaalenii PYR-1]
 gi|119957011|gb|ABM14016.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=216

 Score =  155 bits (393),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 82/149 (56%), Positives = 96/149 (65%), Gaps = 10/149 (6%)

Query  78   LAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRW  137
            LAAS  A A   R+    LP GVAPE GLQVKT+  AR+IS  FPEI  IGG R D L+W
Sbjct  65   LAASAPADA---RVFDFALPAGVAPEGGLQVKTIWAARAISTMFPEITTIGGYRQDPLKW  121

Query  138  HPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGA-  196
            HPNGLA+DVM+PN  + EGI LGN+I  + L NA R+G+  VIWR  YY   GA +  A 
Sbjct  122  HPNGLAIDVMIPNHNSEEGIELGNQIAGYALANAKRWGVLHVIWRQGYYPGIGAPSWTAD  181

Query  197  ------GHYDHIHITTVGGGYPTGEELYI  219
                   H+DH+HI T GGGYPTG E Y 
Sbjct  182  YGSETLNHFDHVHIATDGGGYPTGNESYF  210


>gi|254231921|ref|ZP_04925248.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308370802|ref|ZP_07422789.2| hypothetical protein TMCG_03431 [Mycobacterium tuberculosis SUMu003]
 gi|308372037|ref|ZP_07427155.2| hypothetical protein TMDG_03447 [Mycobacterium tuberculosis SUMu004]
 16 more sequence titles
 
gi|308373223|ref|ZP_07431470.2| hypothetical protein TMEG_01629 [Mycobacterium tuberculosis SUMu005]
 gi|308374383|ref|ZP_07435850.2| hypothetical protein TMFG_00814 [Mycobacterium tuberculosis SUMu006]
 gi|308375663|ref|ZP_07444677.2| hypothetical protein TMGG_00278 [Mycobacterium tuberculosis SUMu007]
 gi|308376806|ref|ZP_07440097.2| hypothetical protein TMHG_00909 [Mycobacterium tuberculosis SUMu008]
 gi|308379014|ref|ZP_07484685.2| hypothetical protein TMJG_03160 [Mycobacterium tuberculosis SUMu010]
 gi|124600980|gb|EAY59990.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308330827|gb|EFP19678.1| hypothetical protein TMCG_03431 [Mycobacterium tuberculosis SUMu003]
 gi|308334649|gb|EFP23500.1| hypothetical protein TMDG_03447 [Mycobacterium tuberculosis SUMu004]
 gi|308338436|gb|EFP27287.1| hypothetical protein TMEG_01629 [Mycobacterium tuberculosis SUMu005]
 gi|308342158|gb|EFP31009.1| hypothetical protein TMFG_00814 [Mycobacterium tuberculosis SUMu006]
 gi|308345631|gb|EFP34482.1| hypothetical protein TMGG_00278 [Mycobacterium tuberculosis SUMu007]
 gi|308349946|gb|EFP38797.1| hypothetical protein TMHG_00909 [Mycobacterium tuberculosis SUMu008]
 gi|308358544|gb|EFP47395.1| hypothetical protein TMJG_03160 [Mycobacterium tuberculosis SUMu010]
 gi|323719820|gb|EGB28934.1| NLP/P60 family protein [Mycobacterium tuberculosis CDC1551A]
 gi|339294682|gb|AEJ46793.1| hypothetical protein CCDC5079_1603 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298314|gb|AEJ50424.1| hypothetical protein CCDC5180_1587 [Mycobacterium tuberculosis 
CCDC5180]
Length=225

 Score =  154 bits (390),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 93/225 (42%), Positives = 125/225 (56%), Gaps = 21/225 (9%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            V +  LA  R +  A+ A+++  AA+ +A G + +       A P   D AP        
Sbjct  4    VSKGVLANGRGRWLAIAASLVVSAAILYAQGAEHTCCRETPAAIPTGPDSAP--------  55

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
               A + +I+       LAAS   +A +++     LP GVA E+GLQVKT+  AR++S  
Sbjct  56   ---ANAPRIASPTEADLLAASAPVAAQQFQFA---LPAGVASEEGLQVKTIWVARAVSVL  109

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FP+I  I G R D L+WHPNGLA+DVM+PN  + EGI LGN++    L NA R+G+  VI
Sbjct  110  FPQITNIFGYRQDPLKWHPNGLAIDVMIPNHHSDEGIQLGNQVAGLALANAKRWGVLHVI  169

Query  181  WRGAYYTPNGARTTGA-------GHYDHIHITTVGGGYPTGEELY  218
            WR  YY   GA +  A        HYDH+HI T GGGYPTG E Y
Sbjct  170  WRQGYYPGIGAPSWTADYGSETLNHYDHVHIATDGGGYPTGRETY  214


>gi|340626733|ref|YP_004745185.1| hypothetical protein MCAN_17391 [Mycobacterium canettii CIPT 
140010059]
 gi|340004923|emb|CCC44071.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=256

 Score =  154 bits (390),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 93/225 (42%), Positives = 125/225 (56%), Gaps = 21/225 (9%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            V +  LA  R +  A+ A+++  AA+ +A G + +       A P   D AP        
Sbjct  35   VSKGVLANGRGRWLAIAASLVVSAAILYAQGAEHTCCRETPAAIPTGPDSAP--------  86

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
               A + +I+       LAAS   +A +++     LP GVA E+GLQVKT+  AR++S  
Sbjct  87   ---ASAPRIASPTEADLLAASAPVAAQQFQFA---LPAGVASEEGLQVKTIWVARAVSVL  140

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FP+I  I G R D L+WHPNGLA+DVM+PN  + EGI LGN++    L NA R+G+  VI
Sbjct  141  FPQITNIFGYRQDPLKWHPNGLAIDVMIPNHHSDEGIQLGNQVAGLALANAKRWGVLHVI  200

Query  181  WRGAYYTPNGARTTGA-------GHYDHIHITTVGGGYPTGEELY  218
            WR  YY   GA +  A        HYDH+HI T GGGYPTG E Y
Sbjct  201  WRQGYYPGIGAPSWTADYGSETLNHYDHVHIATDGGGYPTGRETY  245


>gi|308231913|ref|ZP_07414252.2| hypothetical protein TMAG_01563 [Mycobacterium tuberculosis SUMu001]
 gi|308369509|ref|ZP_07418070.2| hypothetical protein TMBG_00272 [Mycobacterium tuberculosis SUMu002]
 gi|308377807|ref|ZP_07480489.2| hypothetical protein TMIG_01981 [Mycobacterium tuberculosis SUMu009]
 7 more sequence titles
 
gi|308380159|ref|ZP_07488905.2| hypothetical protein TMKG_02236 [Mycobacterium tuberculosis SUMu011]
 gi|308401439|ref|ZP_07493427.2| hypothetical protein TMLG_00713 [Mycobacterium tuberculosis SUMu012]
 gi|308215666|gb|EFO75065.1| hypothetical protein TMAG_01563 [Mycobacterium tuberculosis SUMu001]
 gi|308327383|gb|EFP16234.1| hypothetical protein TMBG_00272 [Mycobacterium tuberculosis SUMu002]
 gi|308354567|gb|EFP43418.1| hypothetical protein TMIG_01981 [Mycobacterium tuberculosis SUMu009]
 gi|308362484|gb|EFP51335.1| hypothetical protein TMKG_02236 [Mycobacterium tuberculosis SUMu011]
 gi|308366062|gb|EFP54913.1| hypothetical protein TMLG_00713 [Mycobacterium tuberculosis SUMu012]
Length=254

 Score =  154 bits (389),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 93/225 (42%), Positives = 125/225 (56%), Gaps = 21/225 (9%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            V +  LA  R +  A+ A+++  AA+ +A G + +       A P   D AP        
Sbjct  33   VSKGVLANGRGRWLAIAASLVVSAAILYAQGAEHTCCRETPAAIPTGPDSAP--------  84

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
               A + +I+       LAAS   +A +++     LP GVA E+GLQVKT+  AR++S  
Sbjct  85   ---ANAPRIASPTEADLLAASAPVAAQQFQFA---LPAGVASEEGLQVKTIWVARAVSVL  138

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FP+I  I G R D L+WHPNGLA+DVM+PN  + EGI LGN++    L NA R+G+  VI
Sbjct  139  FPQITNIFGYRQDPLKWHPNGLAIDVMIPNHHSDEGIQLGNQVAGLALANAKRWGVLHVI  198

Query  181  WRGAYYTPNGARTTGA-------GHYDHIHITTVGGGYPTGEELY  218
            WR  YY   GA +  A        HYDH+HI T GGGYPTG E Y
Sbjct  199  WRQGYYPGIGAPSWTADYGSETLNHYDHVHIATDGGGYPTGRETY  243


>gi|15841190|ref|NP_336227.1| hypothetical protein MT1769 [Mycobacterium tuberculosis CDC1551]
 gi|13881412|gb|AAK46041.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=258

 Score =  154 bits (389),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 93/225 (42%), Positives = 125/225 (56%), Gaps = 21/225 (9%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            V +  LA  R +  A+ A+++  AA+ +A G + +       A P   D AP        
Sbjct  37   VSKGVLANGRGRWLAIAASLVVSAAILYAQGAEHTCCRETPAAIPTGPDSAP--------  88

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
               A + +I+       LAAS   +A +++     LP GVA E+GLQVKT+  AR++S  
Sbjct  89   ---ANAPRIASPTEADLLAASAPVAAQQFQFA---LPAGVASEEGLQVKTIWVARAVSVL  142

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FP+I  I G R D L+WHPNGLA+DVM+PN  + EGI LGN++    L NA R+G+  VI
Sbjct  143  FPQITNIFGYRQDPLKWHPNGLAIDVMIPNHHSDEGIQLGNQVAGLALANAKRWGVLHVI  202

Query  181  WRGAYYTPNGARTTGA-------GHYDHIHITTVGGGYPTGEELY  218
            WR  YY   GA +  A        HYDH+HI T GGGYPTG E Y
Sbjct  203  WRQGYYPGIGAPSWTADYGSETLNHYDHVHIATDGGGYPTGRETY  247


>gi|15608866|ref|NP_216244.1| hypothetical protein Rv1728c [Mycobacterium tuberculosis H37Rv]
 gi|31792916|ref|NP_855409.1| hypothetical protein Mb1757c [Mycobacterium bovis AF2122/97]
 gi|121637636|ref|YP_977859.1| hypothetical protein BCG_1767c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 45 more sequence titles
 
gi|148661526|ref|YP_001283049.1| hypothetical protein MRA_1738 [Mycobacterium tuberculosis H37Ra]
 gi|148822934|ref|YP_001287688.1| hypothetical protein TBFG_11745 [Mycobacterium tuberculosis F11]
 gi|167968660|ref|ZP_02550937.1| hypothetical protein MtubH3_11713 [Mycobacterium tuberculosis 
H37Ra]
 gi|224990111|ref|YP_002644798.1| hypothetical protein JTY_1742 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799232|ref|YP_003032233.1| hypothetical protein TBMG_02268 [Mycobacterium tuberculosis KZN 
1435]
 gi|254364565|ref|ZP_04980611.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254550740|ref|ZP_05141187.1| hypothetical protein Mtube_09824 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289443189|ref|ZP_06432933.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447343|ref|ZP_06437087.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554500|ref|ZP_06443710.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289569781|ref|ZP_06450008.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289574397|ref|ZP_06454624.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745834|ref|ZP_06505212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289750287|ref|ZP_06509665.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753818|ref|ZP_06513196.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289761885|ref|ZP_06521263.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294993161|ref|ZP_06798852.1| hypothetical protein Mtub2_01298 [Mycobacterium tuberculosis 
210]
 gi|297634282|ref|ZP_06952062.1| hypothetical protein MtubK4_09182 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297731269|ref|ZP_06960387.1| hypothetical protein MtubKR_09272 [Mycobacterium tuberculosis 
KZN R506]
 gi|298525226|ref|ZP_07012635.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|313658601|ref|ZP_07815481.1| hypothetical protein MtubKV_09287 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339631783|ref|YP_004723425.1| hypothetical protein MAF_17470 [Mycobacterium africanum GM041182]
 gi|1654030|emb|CAB03712.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31618507|emb|CAD94459.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493283|emb|CAL71754.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134150079|gb|EBA42124.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148505678|gb|ABQ73487.1| hypothetical protein MRA_1738 [Mycobacterium tuberculosis H37Ra]
 gi|148721461|gb|ABR06086.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773224|dbj|BAH26030.1| hypothetical protein JTY_1742 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320735|gb|ACT25338.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289416108|gb|EFD13348.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420301|gb|EFD17502.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439132|gb|EFD21625.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289538828|gb|EFD43406.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289543535|gb|EFD47183.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289686362|gb|EFD53850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690874|gb|EFD58303.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694405|gb|EFD61834.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709391|gb|EFD73407.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298495020|gb|EFI30314.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326903343|gb|EGE50276.1| hypothetical protein TBPG_01211 [Mycobacterium tuberculosis W-148]
 gi|328458986|gb|AEB04409.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339331139|emb|CCC26817.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341601654|emb|CCC64327.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344219550|gb|AEN00181.1| hypothetical protein MTCTRI2_1759 [Mycobacterium tuberculosis 
CTRI-2]
Length=256

 Score =  154 bits (389),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 93/225 (42%), Positives = 125/225 (56%), Gaps = 21/225 (9%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            V +  LA  R +  A+ A+++  AA+ +A G + +       A P   D AP        
Sbjct  35   VSKGVLANGRGRWLAIAASLVVSAAILYAQGAEHTCCRETPAAIPTGPDSAP--------  86

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
               A + +I+       LAAS   +A +++     LP GVA E+GLQVKT+  AR++S  
Sbjct  87   ---ANAPRIASPTEADLLAASAPVAAQQFQFA---LPAGVASEEGLQVKTIWVARAVSVL  140

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FP+I  I G R D L+WHPNGLA+DVM+PN  + EGI LGN++    L NA R+G+  VI
Sbjct  141  FPQITNIFGYRQDPLKWHPNGLAIDVMIPNHHSDEGIQLGNQVAGLALANAKRWGVLHVI  200

Query  181  WRGAYYTPNGARTTGA-------GHYDHIHITTVGGGYPTGEELY  218
            WR  YY   GA +  A        HYDH+HI T GGGYPTG E Y
Sbjct  201  WRQGYYPGIGAPSWTADYGSETLNHYDHVHIATDGGGYPTGRETY  245


>gi|108799870|ref|YP_640067.1| hypothetical protein Mmcs_2904 [Mycobacterium sp. MCS]
 gi|119868980|ref|YP_938932.1| hypothetical protein Mkms_2948 [Mycobacterium sp. KMS]
 gi|126435513|ref|YP_001071204.1| hypothetical protein Mjls_2934 [Mycobacterium sp. JLS]
 gi|108770289|gb|ABG09011.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119695069|gb|ABL92142.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126235313|gb|ABN98713.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=251

 Score =  152 bits (383),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 74/130 (57%), Positives = 88/130 (68%), Gaps = 7/130 (5%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP GVAPE GLQVKT+  AR+I   FPEI+ IGG R D L+WHPNGLA+DVM+PN G+ E
Sbjct  111  LPAGVAPEGGLQVKTIWAARAIGVMFPEIKTIGGYRQDPLKWHPNGLAIDVMIPNHGSDE  170

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGART-------TGAGHYDHIHITTVG  208
            GI LGN+I    L NA R+G+  VIWR  +Y   GA +         A HYDH+HI T G
Sbjct  171  GIELGNQIAGLALANARRWGVLHVIWRQGFYPGIGAPSWTADYGNETANHYDHVHIATNG  230

Query  209  GGYPTGEELY  218
            GG+PTG E Y
Sbjct  231  GGFPTGRETY  240


>gi|118618549|ref|YP_906881.1| hypothetical protein MUL_3192 [Mycobacterium ulcerans Agy99]
 gi|118570659|gb|ABL05410.1| conserved hypothetical secreted protein [Mycobacterium ulcerans 
Agy99]
Length=225

 Score =  149 bits (377),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 84/184 (46%), Positives = 110/184 (60%), Gaps = 19/184 (10%)

Query  52   PCCVQ------IVPV--APLAFSSQISGGEI-GTGLAASQFASASRWRIVSRYLPVGVAP  102
            PCCV+      + PV  AP   S+  +   +    LAA+   +A  ++     LP GVAP
Sbjct  35   PCCVEPPAAAPVSPVSPAPAPVSAPHTASPVEAQSLAANAPVAAQEFQFS---LPSGVAP  91

Query  103  EQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNE  162
            E GLQVKT+  AR+IS  FP+I  IGG R D L+WHPNGLA+DVM+P+  + EGI LGN+
Sbjct  92   ESGLQVKTIWAARAISVLFPQITTIGGFRQDPLKWHPNGLAIDVMIPDHASPEGIELGNQ  151

Query  163  IVAFVLKNATRFGMQDVIWRGAYY----TPNGARTTGA---GHYDHIHITTVGGGYPTGE  215
            I  + L NA R+G+  VIWR   Y     P+     G+    HYDH+HI T GGGYPTG+
Sbjct  152  IAGYALANAKRWGVLHVIWRQKIYPGIVAPSWTADYGSETLNHYDHVHIATDGGGYPTGQ  211

Query  216  ELYI  219
            + Y 
Sbjct  212  KTYF  215


>gi|118470551|ref|YP_888015.1| hypothetical protein MSMEG_3714 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118171838|gb|ABK72734.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=216

 Score =  149 bits (376),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 72/131 (55%), Positives = 89/131 (68%), Gaps = 7/131 (5%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP G APE GLQV T+ TAR+IS  FPEI+ IGG R D L+WHPNGLA+DVM+P+  + +
Sbjct  78   LPPGAAPESGLQVNTIWTARAISVMFPEIKTIGGYRQDPLKWHPNGLAIDVMIPDHQSEK  137

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGART-------TGAGHYDHIHITTVG  208
            GI LGN+I  F L NA R+G+  VIWR   Y   GA +         A H+DH+HI T G
Sbjct  138  GIELGNQIAGFALANAKRWGVLHVIWRQGLYPGIGAPSWTADYGNETANHFDHVHIATNG  197

Query  209  GGYPTGEELYI  219
            GGYPTG+E+Y 
Sbjct  198  GGYPTGKEMYF  208


>gi|183982579|ref|YP_001850870.1| hypothetical protein MMAR_2569 [Mycobacterium marinum M]
 gi|183175905|gb|ACC41015.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=225

 Score =  148 bits (373),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 73/131 (56%), Positives = 88/131 (68%), Gaps = 7/131 (5%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP GVAPE GLQVKT+  AR+IS  FP+I  IGG R D L+WHPNGLA+DVM+P+  + E
Sbjct  85   LPSGVAPESGLQVKTIWAARAISVLFPQITTIGGFRQDPLKWHPNGLAIDVMIPDHASPE  144

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGA-------GHYDHIHITTVG  208
            GI LGN+I  + L NA R+G+  VIWR   Y   GA +  A        HYDH+HI T G
Sbjct  145  GIELGNQIAGYALANAKRWGVLHVIWRQKIYPGIGAPSWTADYGSETLNHYDHVHIATDG  204

Query  209  GGYPTGEELYI  219
            GGYPTG+E Y 
Sbjct  205  GGYPTGQETYF  215


>gi|145224042|ref|YP_001134720.1| hypothetical protein Mflv_3457 [Mycobacterium gilvum PYR-GCK]
 gi|315444378|ref|YP_004077257.1| hypothetical protein Mspyr1_27940 [Mycobacterium sp. Spyr1]
 gi|145216528|gb|ABP45932.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315262681|gb|ADT99422.1| hypothetical protein Mspyr1_27940 [Mycobacterium sp. Spyr1]
Length=220

 Score =  145 bits (367),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 72/136 (53%), Positives = 88/136 (65%), Gaps = 7/136 (5%)

Query  90   RIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVP  149
            R+    LP G+ PE GLQV T+  AR+I+  FPEI  IGG R DAL+WHPNGLA+DVM+P
Sbjct  78   RVFDFPLPKGITPEGGLQVHTIWVARAIATMFPEITTIGGYRQDALKWHPNGLAIDVMIP  137

Query  150  NPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTGA-------GHYDHI  202
            N  +  GIALGN+I  + L NA R G+  VIWR  +Y   GA +  A        H+DH+
Sbjct  138  NHNSEAGIALGNQIAGYALANAERMGVIHVIWRQGFYPGIGAPSWTADYGSETLNHFDHV  197

Query  203  HITTVGGGYPTGEELY  218
            HI T GGGYPTG E Y
Sbjct  198  HIATDGGGYPTGRETY  213


>gi|108802504|ref|YP_642700.1| hypothetical protein Mmcs_5544 [Mycobacterium sp. MCS]
 gi|119855332|ref|YP_935935.1| hypothetical protein Mkms_5946 [Mycobacterium sp. KMS]
 gi|108772923|gb|ABG11644.1| hypothetical protein Mmcs_5544 [Mycobacterium sp. MCS]
 gi|119698049|gb|ABL95120.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=437

 Score =  140 bits (354),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 69/143 (49%), Positives = 92/143 (65%), Gaps = 7/143 (4%)

Query  78   LAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRW  137
            + A+    ASR       LP G APE  LQ  T+LT R++SAAFP+I+ IGG RPD+++W
Sbjct  234  MCAASRPRASRSVYNLSKLPPGKAPEDRLQRYTILTNRAVSAAFPQIQTIGGYRPDSMKW  293

Query  138  HPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTT---  194
            HP GLALD+M+PN  + +GI+LGN I+ F+LKNA   G+   IWR   Y P+G       
Sbjct  294  HPQGLALDIMIPNYLSPQGISLGNGILQFLLKNAKTLGVDHAIWRQHIYYPSGTAEPMED  353

Query  195  ----GAGHYDHIHITTVGGGYPT  213
                 A H+DH+H+ T+GGGYPT
Sbjct  354  RGGLTANHFDHVHVATIGGGYPT  376


>gi|119855147|ref|YP_935752.1| hypothetical protein Mkms_5762 [Mycobacterium sp. KMS]
 gi|119697865|gb|ABL94937.1| hypothetical protein Mkms_5762 [Mycobacterium sp. KMS]
Length=322

 Score =  140 bits (352),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 69/128 (54%), Positives = 86/128 (68%), Gaps = 7/128 (5%)

Query  90   RIVSRYLPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVP  149
            R +   LP G APE+GLQ  TVLT R++SAAFP+IREIGGVR D+L+WHPNGLALDVM+P
Sbjct  195  RAIQGQLPPGKAPEKGLQKFTVLTNRAVSAAFPQIREIGGVRADSLKWHPNGLALDVMIP  254

Query  150  NPGTAEGIALGNEIVAFVLKNATRFGMQDVIWRGAYY-------TPNGARTTGAGHYDHI  202
            N  T +G ALG+E+++FV+ N    G+   IWR A Y          G     A H+DH+
Sbjct  255  NWNTPQGKALGDEVLSFVMANKEALGVDHAIWRQATYYGPGGGEPMGGRGGATANHFDHV  314

Query  203  HITTVGGG  210
            HI T GGG
Sbjct  315  HIATKGGG  322


>gi|296170201|ref|ZP_06851795.1| NLP/P60 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895153|gb|EFG74870.1| NLP/P60 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=227

 Score =  139 bits (351),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 70/130 (54%), Positives = 85/130 (66%), Gaps = 7/130 (5%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP G+A E  LQVKT+   R+IS  FP+I+ I G R DAL WHPNGLA+DVM+PN  + E
Sbjct  89   LPRGIASENRLQVKTIWAERAISVLFPQIKTIYGYREDALPWHPNGLAIDVMIPNHASPE  148

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYY--TPNGARTTGAG-----HYDHIHITTVG  208
            GI LGN+I  + L NA R+G+  VIWR   Y     G+ T   G     HYDH+HI T G
Sbjct  149  GIELGNQIAGYALANAKRWGINHVIWRQKIYPGVGGGSWTADLGSETLNHYDHVHIATNG  208

Query  209  GGYPTGEELY  218
            GGYPTG E+Y
Sbjct  209  GGYPTGHEIY  218


>gi|333990517|ref|YP_004523131.1| hypothetical protein JDM601_1877 [Mycobacterium sp. JDM601]
 gi|333486485|gb|AEF35877.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=210

 Score =  139 bits (350),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 70/132 (54%), Positives = 86/132 (66%), Gaps = 9/132 (6%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP GVAPE GLQVKT+  AR+I   F EI+ I G R D LRWHP+GLA+DVM+PN  +  
Sbjct  70   LPAGVAPENGLQVKTIWAARTIGVLFQEIKTIYGYRQDPLRWHPDGLAIDVMIPNYHSDA  129

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWR--------GAYYTPNGARTTGAGHYDHIHITTV  207
            GI LG++I  + L NA R+G+  VIWR        G  +T +    T A HYDH+HI T 
Sbjct  130  GILLGDQIAGYALANAKRWGVNHVIWRQKIYPGVGGGNWTSDYGNET-ANHYDHVHIATN  188

Query  208  GGGYPTGEELYI  219
            GGGYPTG+E Y 
Sbjct  189  GGGYPTGQETYF  200


>gi|254821278|ref|ZP_05226279.1| hypothetical protein MintA_15172 [Mycobacterium intracellulare 
ATCC 13950]
Length=223

 Score =  135 bits (341),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 70/131 (54%), Positives = 84/131 (65%), Gaps = 9/131 (6%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP GVA E  LQVKT+  AR+I   FP+I+ I G R D L WHP GLA+DVM+PN  T E
Sbjct  84   LPRGVASEDRLQVKTIWAARAIGVLFPQIKTIYGYREDPLPWHPKGLAIDVMIPNFHTPE  143

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWR--------GAYYTPNGARTTGAGHYDHIHITTV  207
            GI LGN+I  + L NA R+G+  VIWR        G  +T +    T A HYDH+HI T 
Sbjct  144  GIDLGNQIAGYALANAKRWGINHVIWRQKIYPGVGGGNWTADLGSET-ANHYDHVHIATD  202

Query  208  GGGYPTGEELY  218
            GGGYPTG E+Y
Sbjct  203  GGGYPTGHEVY  213


>gi|254774325|ref|ZP_05215841.1| hypothetical protein MaviaA2_06610 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=233

 Score =  132 bits (333),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 69/132 (53%), Positives = 82/132 (63%), Gaps = 11/132 (8%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP  V  E  LQVKT+  AR+IS  FP+I  I G R D L WHPNGLA+DVM+PN  T E
Sbjct  93   LPHSVGSEDRLQVKTIWAARAISVLFPQITTIYGYREDPLPWHPNGLAIDVMIPNYHTPE  152

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWR---------GAYYTPNGARTTGAGHYDHIHITT  206
            GI LGN+I  + L NA R+G+  VIWR         G +    G+ T  A HYDH+HI T
Sbjct  153  GIELGNQIAGYALANAKRWGINHVIWRQKIYPGVGGGNWMADLGSET--ADHYDHVHIAT  210

Query  207  VGGGYPTGEELY  218
             GGGYP+G E Y
Sbjct  211  DGGGYPSGHETY  222


>gi|41408573|ref|NP_961409.1| hypothetical protein MAP2475 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118464173|ref|YP_880689.1| hypothetical protein MAV_1447 [Mycobacterium avium 104]
 gi|41396931|gb|AAS04792.1| hypothetical protein MAP_2475 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118165460|gb|ABK66357.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=233

 Score =  132 bits (333),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 68/130 (53%), Positives = 80/130 (62%), Gaps = 7/130 (5%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP  V  E  LQVKT+  AR+IS  FP+I  I G R D L WHPNGLA+DVM+PN  T E
Sbjct  93   LPHSVGSEDRLQVKTIWAARAISVLFPQITTIYGYREDPLPWHPNGLAIDVMIPNYHTPE  152

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGA-------RTTGAGHYDHIHITTVG  208
            GI LGN+I  + L NA R+G+  VIWR   Y   G         +  A HYDH+HI T G
Sbjct  153  GIELGNQIAGYALANAKRWGINHVIWRQKIYPGVGGGNWMADLGSETADHYDHVHIATDG  212

Query  209  GGYPTGEELY  218
            GGYP+G E Y
Sbjct  213  GGYPSGHETY  222


>gi|342858050|ref|ZP_08714706.1| hypothetical protein MCOL_04210 [Mycobacterium colombiense CECT 
3035]
 gi|342135383|gb|EGT88549.1| hypothetical protein MCOL_04210 [Mycobacterium colombiense CECT 
3035]
Length=230

 Score =  132 bits (332),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 67/130 (52%), Positives = 81/130 (63%), Gaps = 7/130 (5%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP  V  E+ LQVKT+  AR I+  FP+I+ I G R D L WHPNGLA+DVM+PN  + E
Sbjct  90   LPHSVGSEERLQVKTIWAARVITVLFPQIKTIYGYREDPLPWHPNGLAIDVMIPNYHSPE  149

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGA-------RTTGAGHYDHIHITTVG  208
            GI LGN+I  + L NA R+G+  VIWR   Y   G         +  A HYDH+HI T G
Sbjct  150  GIELGNQIAGYALANAKRWGINHVIWRQKIYPGVGGGNWMADLGSETADHYDHVHIATGG  209

Query  209  GGYPTGEELY  218
            GGYPTG E Y
Sbjct  210  GGYPTGHETY  219


>gi|336460922|gb|EGO39805.1| hypothetical protein MAPs_35880 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=233

 Score =  130 bits (328),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 67/130 (52%), Positives = 80/130 (62%), Gaps = 7/130 (5%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAE  155
            LP  V  E  LQVKT+  AR+IS  FP+I  I G R D L WHPNGLA+DV++PN  T E
Sbjct  93   LPHSVGSEDRLQVKTIWAARAISVLFPQITTIYGYREDPLPWHPNGLAIDVIIPNYHTPE  152

Query  156  GIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGA-------RTTGAGHYDHIHITTVG  208
            GI LGN+I  + L NA R+G+  VIWR   Y   G         +  A HYDH+HI T G
Sbjct  153  GIELGNQIAGYALANAKRWGINHVIWRQKIYPGVGGGNWMADLGSETADHYDHVHIATDG  212

Query  209  GGYPTGEELY  218
            GGYP+G E Y
Sbjct  213  GGYPSGHETY  222


>gi|289757836|ref|ZP_06517214.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289713400|gb|EFD77412.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=248

 Score =  124 bits (312),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 76/191 (40%), Positives = 106/191 (56%), Gaps = 14/191 (7%)

Query  1    VGRHELARDRRKSSAVLAAVLAPAAVFFATGGDVSTLAARADANPVLGDDAPCCVQIVPV  60
            V +  LA  R +  A+ A+++  AA+ +A G + +       A P   D AP        
Sbjct  35   VSKGVLANGRGRWLAIAASLVVSAAILYAQGAEHTCCRETPAAIPTGPDSAP--------  86

Query  61   APLAFSSQISGGEIGTGLAASQFASASRWRIVSRYLPVGVAPEQGLQVKTVLTARSISAA  120
               A + +I+       LAAS   +A +++     LP GVA E+GLQVKT+  AR++S  
Sbjct  87   ---ANAPRIASPTEADLLAASAPVAAQQFQFA---LPAGVASEEGLQVKTIWVARAVSVL  140

Query  121  FPEIREIGGVRPDALRWHPNGLALDVMVPNPGTAEGIALGNEIVAFVLKNATRFGMQDVI  180
            FP+I  I G R D L+WHPNGLA+DVM+PN  + EGI LGN++    L NA R+G+  VI
Sbjct  141  FPQITNIFGYRQDPLKWHPNGLAIDVMIPNHHSDEGIQLGNQVAGLALANAKRWGVLHVI  200

Query  181  WRGAYYTPNGA  191
            WR  YY   GA
Sbjct  201  WRQGYYPGIGA  211


>gi|40445368|ref|NP_954828.1| M24/M37 family peptidase [Gordonia westfalica]
 gi|40217398|emb|CAE09149.1| putative peptidase related to M23/M37 family [Gordonia westfalica]
Length=674

 Score =  100 bits (248),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 53/132 (41%), Positives = 72/132 (55%), Gaps = 9/132 (6%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDA--LRWHPNGLALDVMVPNPGT  153
            LP     E   QV ++  AR+I+A FP+I+ IGG R D      HP+G A+DVM+PN  +
Sbjct  346  LPKSKGSEAHFQVDSIRLARAIAAKFPQIQTIGGWRADGGGFNDHPSGRAVDVMIPNYTS  405

Query  154  AEGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTT-------GAGHYDHIHITT  206
            A+GIALGN +  ++L N   F ++  IWR  YY   G              H+DH+H T 
Sbjct  406  AQGIALGNAVNKYILDNKKHFKLEYTIWRQTYYPVVGKSNIMNDRGDPTQNHFDHVHATV  465

Query  207  VGGGYPTGEELY  218
             G G P G E+Y
Sbjct  466  EGHGMPRGNEVY  477


>gi|262118176|ref|YP_003275946.1| Transglycosylase domain protein [Gordonia bronchialis DSM 43247]
 gi|262088086|gb|ACY24053.1| Transglycosylase domain protein [Gordonia bronchialis DSM 43247]
Length=682

 Score = 99.4 bits (246),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 54/131 (42%), Positives = 73/131 (56%), Gaps = 8/131 (6%)

Query  96   LPVGVAPEQGLQVKTVLTARSISAAFPEIREIGGVRP-DALRWHPNGLALDVMVPNPGTA  154
            LP     E   Q+ ++  AR+I+  FP+I  IGG RP D    HP+G A+DVM+PN  +A
Sbjct  351  LPSSKGSEAHWQIDSIRLARAIAVKFPKIATIGGWRPSDPFPDHPSGRAIDVMIPNYSSA  410

Query  155  EGIALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGAR-------TTGAGHYDHIHITTV  207
            EGIALGN +  +V+ N   F +   IWR  Y    GA        +    H DH+H+T  
Sbjct  411  EGIALGNAVHKYVMDNKKFFKVVYTIWRQRYLDATGATNIMGNRGSDTQNHMDHLHVTLE  470

Query  208  GGGYPTGEELY  218
            G G+PTG E+Y
Sbjct  471  GHGFPTGREVY  481


>gi|108802505|ref|YP_642701.1| hypothetical protein Mmcs_5545 [Mycobacterium sp. MCS]
 gi|119855333|ref|YP_935936.1| hypothetical protein Mkms_5947 [Mycobacterium sp. KMS]
 gi|108772924|gb|ABG11645.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119698050|gb|ABL95121.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=171

 Score = 98.6 bits (244),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 51/124 (42%), Positives = 75/124 (61%), Gaps = 8/124 (6%)

Query  99   GVAPEQGLQVKTVLTARSISAAFPEIREIGGVRPDALRWHPNGLALDVMVPN-PGTAEGI  157
            G A + GLQ   +    +++  FP+I +I G RPD +  H +G ALD+++P  P +A+G+
Sbjct  41   GQASDVGLQRDAIAVNHAVAQQFPQIVQISGWRPDPIGGHGDGRALDILIPGAPSSADGM  100

Query  158  ALGNEIVAFVLKNATRFGMQDVIWRGAYYTPNGARTTG-------AGHYDHIHITTVGGG  210
            ALG+EIV +VL +A + G++ V WRG  Y P+G  T         A H  H+H+ T GGG
Sbjct  101  ALGDEIVRYVLSHAEQLGIEHVAWRGRLYRPDGTSTPMADRGGDVANHMTHLHVLTHGGG  160

Query  211  YPTG  214
            YP G
Sbjct  161  YPEG  164



Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 273402666736




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40