BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0330c
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607471|ref|NP_214844.1| hypothetical protein Rv0330c [Mycob... 484 7e-135
gi|289748813|ref|ZP_06508191.1| hypothetical protein TBDG_01357 ... 389 2e-106
gi|256397325|ref|YP_003118889.1| TetR family transcriptional reg... 91.7 9e-17
gi|331699634|ref|YP_004335873.1| regulatory protein TetR [Pseudo... 81.6 1e-13
gi|154253033|ref|YP_001413857.1| regulatory protein TetR [Parvib... 63.5 2e-08
gi|154246271|ref|YP_001417229.1| TetR family transcriptional reg... 54.7 1e-05
gi|154251068|ref|YP_001411892.1| TetR family transcriptional reg... 52.8 4e-05
gi|120601546|ref|YP_965946.1| TetR family transcriptional regula... 52.0 8e-05
gi|330991756|ref|ZP_08315706.1| HTH-type transcriptional repress... 52.0 9e-05
gi|315925687|ref|ZP_07921896.1| conserved hypothetical protein [... 51.2 1e-04
gi|325925599|ref|ZP_08186984.1| transcriptional regulator [Xanth... 51.2 1e-04
gi|78048557|ref|YP_364732.1| TetR family transcriptional regulat... 50.8 2e-04
gi|46581223|ref|YP_012031.1| TetR family transcriptional regulat... 50.8 2e-04
gi|319936277|ref|ZP_08010695.1| TetR-family transcriptional regu... 50.4 2e-04
gi|162149557|ref|YP_001604018.1| TetR family transcriptional reg... 50.4 2e-04
gi|317054217|ref|YP_004118242.1| transcriptional regulator, TetR... 50.4 2e-04
gi|223985660|ref|ZP_03635708.1| hypothetical protein HOLDEFILI_0... 50.4 2e-04
gi|86139091|ref|ZP_01057662.1| possible transcriptional regulato... 50.1 3e-04
gi|296120826|ref|YP_003628604.1| regulatory protein TetR [Planct... 50.1 3e-04
gi|289209083|ref|YP_003461149.1| TetR family transcriptional reg... 50.1 3e-04
gi|120404948|ref|YP_954777.1| TetR family transcriptional regula... 49.3 5e-04
gi|299135716|ref|ZP_07028900.1| transcriptional regulator, TetR ... 49.3 5e-04
gi|317052683|ref|YP_004113799.1| regulatory protein TetR [Desulf... 49.3 5e-04
gi|226941067|ref|YP_002796141.1| transcriptional regulator, TetR... 48.5 8e-04
gi|292488240|ref|YP_003531122.1| HTH-type transcriptional regula... 48.5 0.001
gi|312172378|emb|CBX80635.1| Uncharacterized HTH-type transcript... 48.1 0.001
gi|71909534|ref|YP_287121.1| TetR family transcriptional regulat... 48.1 0.001
gi|237653160|ref|YP_002889474.1| TetR family transcriptional reg... 48.1 0.001
gi|145220619|ref|YP_001131297.1| TetR family transcriptional reg... 47.8 0.001
gi|340029676|ref|ZP_08665739.1| TetR family transcriptional regu... 47.8 0.002
gi|21243568|ref|NP_643150.1| transcriptional regulator [Xanthomo... 47.8 0.002
gi|336430521|ref|ZP_08610467.1| hypothetical protein HMPREF0994_... 47.8 0.002
gi|315442433|ref|YP_004075312.1| TetR family transcriptional reg... 47.4 0.002
gi|298250661|ref|ZP_06974465.1| transcriptional regulator, TetR ... 47.4 0.002
gi|297616428|ref|YP_003701587.1| TetR family transcriptional reg... 47.4 0.002
gi|309390058|gb|ADO77938.1| regulatory protein TetR [Halanaerobi... 47.4 0.002
gi|296117236|ref|ZP_06835828.1| transcriptional regulator, TetR ... 47.0 0.002
gi|328884825|emb|CCA58064.1| Transcriptional regulator, TetR fam... 47.0 0.002
gi|339021214|ref|ZP_08645323.1| transcriptional regulator TetR [... 47.0 0.002
gi|159045578|ref|YP_001534372.1| transcriptional regulator [Dino... 47.0 0.002
gi|328949579|ref|YP_004366914.1| regulatory protein TetR [Marini... 47.0 0.003
gi|182676815|ref|YP_001830923.1| regulatory protein TetR [Beijer... 47.0 0.003
gi|188533872|ref|YP_001907669.1| TetR-family transcriptional reg... 46.6 0.003
gi|187927744|ref|YP_001898231.1| TetR family transcriptional reg... 46.6 0.003
gi|226312330|ref|YP_002772224.1| transcriptional regulator [Brev... 46.6 0.003
gi|309780805|ref|ZP_07675546.1| transcriptional regulator, TetR ... 46.6 0.003
gi|241662224|ref|YP_002980584.1| TetR family transcriptional reg... 46.6 0.003
gi|334111259|ref|ZP_08485530.1| regulatory protein TetR [Methylo... 46.6 0.004
gi|300309825|ref|YP_003773917.1| TetR family transcription regul... 46.2 0.004
gi|271501399|ref|YP_003334424.1| TetR family transcriptional reg... 46.2 0.004
>gi|15607471|ref|NP_214844.1| hypothetical protein Rv0330c [Mycobacterium tuberculosis H37Rv]
gi|15839717|ref|NP_334754.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31791508|ref|NP_854001.1| hypothetical protein Mb0337c [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=246
Score = 484 bits (1245), Expect = 7e-135, Method: Compositional matrix adjust.
Identities = 246/246 (100%), Positives = 246/246 (100%), Gaps = 0/246 (0%)
Query 1 MARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
MARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV
Sbjct 1 MARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
Query 61 RYGDAQEALPLASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDAR 120
RYGDAQEALPLASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDAR
Sbjct 61 RYGDAQEALPLASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDAR 120
Query 121 AELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERA 180
AELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERA
Sbjct 121 AELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERA 180
Query 181 GLLILPGPAPMVARTIVELCALWAVHLHFDPSPEPWSIVQPGVIDDDAIAATLAEFVVRA 240
GLLILPGPAPMVARTIVELCALWAVHLHFDPSPEPWSIVQPGVIDDDAIAATLAEFVVRA
Sbjct 181 GLLILPGPAPMVARTIVELCALWAVHLHFDPSPEPWSIVQPGVIDDDAIAATLAEFVVRA 240
Query 241 TTASSD 246
TTASSD
Sbjct 241 TTASSD 246
>gi|289748813|ref|ZP_06508191.1| hypothetical protein TBDG_01357 [Mycobacterium tuberculosis T92]
gi|289689400|gb|EFD56829.1| hypothetical protein TBDG_01357 [Mycobacterium tuberculosis T92]
Length=201
Score = 389 bits (999), Expect = 2e-106, Method: Compositional matrix adjust.
Identities = 197/197 (100%), Positives = 197/197 (100%), Gaps = 0/197 (0%)
Query 50 QGKAALFAAAVRYGDAQEALPLASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRAT 109
QGKAALFAAAVRYGDAQEALPLASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRAT
Sbjct 5 QGKAALFAAAVRYGDAQEALPLASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRAT 64
Query 110 LPPGATTGDARAELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDA 169
LPPGATTGDARAELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDA
Sbjct 65 LPPGATTGDARAELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDA 124
Query 170 VQAYLVHRERAGLLILPGPAPMVARTIVELCALWAVHLHFDPSPEPWSIVQPGVIDDDAI 229
VQAYLVHRERAGLLILPGPAPMVARTIVELCALWAVHLHFDPSPEPWSIVQPGVIDDDAI
Sbjct 125 VQAYLVHRERAGLLILPGPAPMVARTIVELCALWAVHLHFDPSPEPWSIVQPGVIDDDAI 184
Query 230 AATLAEFVVRATTASSD 246
AATLAEFVVRATTASSD
Sbjct 185 AATLAEFVVRATTASSD 201
>gi|256397325|ref|YP_003118889.1| TetR family transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256363551|gb|ACU77048.1| transcriptional regulator, TetR family [Catenulispora acidiphila
DSM 44928]
Length=232
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/218 (36%), Positives = 106/218 (49%), Gaps = 15/218 (6%)
Query 1 MARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
M +PA + + A+ RVFI G++ + DVA L L+ G +Y YA K AL A+
Sbjct 1 MRGRLPARPLAEVADAAVRVFITKGFRSAGISDVAGELGLSHGAVYTYADSKQALLYLAL 60
Query 61 RYGDAQEALPLASEL--PVAAPVAGEIAAVV----SARLAGEVTDMRLTHALRATLPPGA 114
EA A+EL PV AP I V +AR D L A P
Sbjct 61 LRVLDPEA---AAELATPVVAPPMERIVEAVKTWTAARGGLGGVDALLAKA------PAE 111
Query 115 TTGDARAELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYL 174
+ G AR ELA +V LY + + + LKL RCA +LP+LA ++ R ++A+ YL
Sbjct 112 SAGPARDELAQVVDGLYGFIEDNSVPLKLFARCAEDLPELAAWYYVQTRRGLLEALGGYL 171
Query 175 VHRERAGLLILPGPAPMVARTIVELCALWAVHLHFDPS 212
R AG+L P+ AR IVE A +A+H H DP
Sbjct 172 RARIDAGVLRPVPDVPVAARFIVETIAWFAMHRHGDPD 209
>gi|331699634|ref|YP_004335873.1| regulatory protein TetR [Pseudonocardia dioxanivorans CB1190]
gi|326954323|gb|AEA28020.1| regulatory protein TetR [Pseudonocardia dioxanivorans CB1190]
Length=233
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/230 (36%), Positives = 108/230 (47%), Gaps = 31/230 (13%)
Query 16 ASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEALPLASEL 75
A+ RVF+ GY+ + DVA L L+ G LY Y + K AL + +L EL
Sbjct 16 AAGRVFVEKGYRGAGISDVAGRLGLSHGALYTYVRSKEALLHLVLLRAVEPGSL---DEL 72
Query 76 PVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDARA-----ELAGIVTDL 130
P+ PVAG + A LA D THA TLP A R EL +V +L
Sbjct 73 PL--PVAGADPERIVA-LARTWAD---THA---TLPVLAAACRRRTMPVADELVAVVDEL 123
Query 131 YSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERAGLLILPGPAP 190
Y + R+R+ L LV+RCA +LP+LA + F R V + YL R R+G L P P
Sbjct 124 YGFVERNRLLLALVERCAADLPELATLHFVERRRELVGRLATYLRRRIRSGHL---RPVP 180
Query 191 MV---ARTIVELCALWAVHLHFDPSPEPWSIVQPGVIDDDAIAATLAEFV 237
V AR +VE A +A H DP ++ DDA T+ + V
Sbjct 181 DVDAAARFVVETVAWFAWHRREDP--------DSAMLGDDAARTTVHDLV 222
>gi|154253033|ref|YP_001413857.1| regulatory protein TetR [Parvibaculum lavamentivorans DS-1]
gi|154156983|gb|ABS64200.1| regulatory protein TetR [Parvibaculum lavamentivorans DS-1]
Length=234
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/214 (33%), Positives = 98/214 (46%), Gaps = 12/214 (5%)
Query 1 MARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
MAR + I A+ F G +RTQ+ DVA ++ GTLY Y K ALF A+
Sbjct 1 MARKKTPQKVDDIAEAAIACFTDLGIRRTQMADVAKVAGVSAGTLYLYVTSKEALFHLAI 60
Query 61 RYGDAQEALPLASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDAR 120
A+ LA P+A P AA+ +AR+A ++R AL L P A G
Sbjct 61 LKVCARPLENLA--FPLADPGMKATAAIFAARIA----EVRHWPALDEALKPNAKAG--M 112
Query 121 AELAGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERA 180
L I +LY L+ R A+ LVD+C+ E+ + ++ R D + V + A
Sbjct 113 ETLRQIGRELYDMLSEARRAIWLVDQCSSEIAEFEQMHARDLRARHRDQLAEAAV--KAA 170
Query 181 GLLILPGPAPMV-ARTIVELCALWAVHLHFDPSP 213
G P PA ++ AR +E+ A WA SP
Sbjct 171 GRKAAPSPALILAARLGIEVVA-WAAMHRLRESP 203
>gi|154246271|ref|YP_001417229.1| TetR family transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154160356|gb|ABS67572.1| transcriptional regulator, TetR family [Xanthobacter autotrophicus
Py2]
Length=221
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/157 (30%), Positives = 62/157 (40%), Gaps = 40/157 (25%)
Query 20 VFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEALPLASELPVAA 79
+F+ GY+ T + VA A ++K TLY + GKA LF A
Sbjct 44 LFLEKGYEGTSMDAVAAAAPVSKRTLYQHFPGKAELFEA--------------------- 82
Query 80 PVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDARAELAGIVTDLYSRLARHRI 139
V D +H RA L P TGD R L V L AR +
Sbjct 83 -----------------VIDEAWSHFTRAPLIPTEATGDPRGVLRAYVARLTEHWARPDV 125
Query 140 A--LKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYL 174
L+LV AP P+L++ +F G+ V + AYL
Sbjct 126 IPLLRLVIAEAPRFPELSKAYFAAGKEPAVKGLSAYL 162
>gi|154251068|ref|YP_001411892.1| TetR family transcriptional regulator [Parvibaculum lavamentivorans
DS-1]
gi|154155018|gb|ABS62235.1| transcriptional regulator, TetR family [Parvibaculum lavamentivorans
DS-1]
Length=202
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (36%), Positives = 53/87 (61%), Gaps = 0/87 (0%)
Query 7 ADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQ 66
AD+ I++++ +F +GY+RT ++D+A A A+AKGTLY Y + K LF A R Q
Sbjct 15 ADKREVIISSALDLFRHYGYRRTSMEDIARAAAVAKGTLYLYFKSKDELFEAICRTLAEQ 74
Query 67 EALPLASELPVAAPVAGEIAAVVSARL 93
A + + + P+ ++AA++ A+L
Sbjct 75 VAEGVTAAEALDLPLERKLAALMEAKL 101
>gi|120601546|ref|YP_965946.1| TetR family transcriptional regulator [Desulfovibrio vulgaris
DP4]
gi|120561775|gb|ABM27519.1| transcriptional regulator, TetR family [Desulfovibrio vulgaris
DP4]
Length=202
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 33/53 (63%), Gaps = 0/53 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAA 58
P DR S I+ + +F+ HGYQ T + +A AL +KGTLY Y + K ALF A
Sbjct 7 PRDRRSEIIEIAGPLFLEHGYQGTSMSRIAAALGGSKGTLYAYFESKEALFEA 59
>gi|330991756|ref|ZP_08315706.1| HTH-type transcriptional repressor AcnR [Gluconacetobacter sp.
SXCC-1]
gi|329761224|gb|EGG77718.1| HTH-type transcriptional repressor AcnR [Gluconacetobacter sp.
SXCC-1]
Length=232
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/191 (27%), Positives = 77/191 (41%), Gaps = 43/191 (22%)
Query 13 IVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEALPLA 72
I+A +ARVF HGY+ + +A ++KGTLY Y KA LF+A V A E +PL
Sbjct 29 ILAGAARVFAEHGYEGASMSGIARDAGVSKGTLYNYFDSKATLFSAFVEQC-ACEKMPL- 86
Query 73 SELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDARAELAGIVTDLYS 132
L + + GA ++ LA + L +
Sbjct 87 ---------------------------------LFSRIDEGANLTESLDHLAVAMIRLLT 113
Query 133 ---RLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERAGLLILPGPA 189
L +RI + A P LAE ++ G ++ + A+L+ AG+L +P P
Sbjct 114 SPLSLMLNRIIISE----AGNFPALAETFWKHGPQKAINILSAWLMQHNDAGVLNIPDPV 169
Query 190 PMVARTIVELC 200
A LC
Sbjct 170 -FAAEQFYALC 179
>gi|315925687|ref|ZP_07921896.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621005|gb|EFV00977.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
ATCC 23263]
Length=196
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 36/59 (62%), Gaps = 1/59 (1%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALF-AAAVRYG 63
P +R IV + R+F+ GY+RTQ++D+ A+ +A+G Y Y + K + A AV YG
Sbjct 7 PEERKEEIVQTAKRLFVERGYKRTQIKDIVGAVGVAQGLFYYYFKSKEDVMEAVAVEYG 65
>gi|325925599|ref|ZP_08186984.1| transcriptional regulator [Xanthomonas perforans 91-118]
gi|325543999|gb|EGD15397.1| transcriptional regulator [Xanthomonas perforans 91-118]
Length=226
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/174 (31%), Positives = 78/174 (45%), Gaps = 19/174 (10%)
Query 3 RSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRY 62
R P D+ AI+AA+ +F HG+ RT + +A+ ++K T+Y + K LF +
Sbjct 11 RRAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTL-- 68
Query 63 GDAQEALPLASE------LPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATT 116
EAL AS L + P+ + AV A L + MR A PP
Sbjct 69 ----EALAQASPNRWTALLELQGPLEQRLTAVADAVLRVSASSMRDDAAYGLVRPP-LLP 123
Query 117 GDARAELAGIVTDLYSRLARHRIALKLVDRCA---PELPDLAEVWFG--TGRNA 165
G R E+ + + Y + R +A + V R A LPD + +FG TGR A
Sbjct 124 GQVREEMWTLCFERYDTMMRTLLA-REVQRGALVIENLPDASVHFFGLMTGRPA 176
>gi|78048557|ref|YP_364732.1| TetR family transcriptional regulator [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|78036987|emb|CAJ24699.1| transcriptional regulator, TetR family [Xanthomonas campestris
pv. vesicatoria str. 85-10]
Length=226
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/174 (31%), Positives = 78/174 (45%), Gaps = 19/174 (10%)
Query 3 RSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRY 62
R P D+ AI+AA+ +F HG+ RT + +A+ ++K T+Y + K LF +
Sbjct 11 RRAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTL-- 68
Query 63 GDAQEALPLASE------LPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATT 116
EAL AS L + P+ + AV A L + MR A PP
Sbjct 69 ----EALAQASPNRWTALLELQGPLEQRLTAVADAVLRVSASSMRDDAAYGLVRPP-LLP 123
Query 117 GDARAELAGIVTDLYSRLARHRIALKLVDRCA---PELPDLAEVWFG--TGRNA 165
G R E+ + + Y + R +A + V R A LPD + +FG TGR A
Sbjct 124 GQVREEMWTLCFERYDTMMRTLLA-REVQRGALVIDNLPDASVHFFGLMTGRPA 176
>gi|46581223|ref|YP_012031.1| TetR family transcriptional regulator [Desulfovibrio vulgaris
str. Hildenborough]
gi|46450644|gb|AAS97291.1| transcriptional regulator, TetR family [Desulfovibrio vulgaris
str. Hildenborough]
gi|311234890|gb|ADP87744.1| regulatory protein TetR [Desulfovibrio vulgaris RCH1]
Length=202
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 32/53 (61%), Gaps = 0/53 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAA 58
P DR S I+ + +F+ HGYQ T + +A AL +KGTLY Y K ALF A
Sbjct 7 PRDRRSEIIEIAGPLFLEHGYQGTSMSRIAAALGGSKGTLYAYFDSKEALFEA 59
>gi|319936277|ref|ZP_08010695.1| TetR-family transcriptional regulator [Coprobacillus sp. 29_1]
gi|319808653|gb|EFW05197.1| TetR-family transcriptional regulator [Coprobacillus sp. 29_1]
Length=210
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (35%), Positives = 35/58 (61%), Gaps = 0/58 (0%)
Query 3 RSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
+ P I+A S+++F+ GY++T +QD+ DAL L+KG LY + + K + A +
Sbjct 4 KKNPEQTIEQIIAVSSQLFVEKGYEQTSIQDILDALDLSKGGLYHHFKSKEEILEAVM 61
>gi|162149557|ref|YP_001604018.1| TetR family transcriptional regulator [Gluconacetobacter diazotrophicus
PAl 5]
gi|209544794|ref|YP_002277023.1| TetR family transcriptional regulator [Gluconacetobacter diazotrophicus
PAl 5]
gi|161788134|emb|CAP57738.1| putative transcriptional regulator, TetR family [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532471|gb|ACI52408.1| transcriptional regulator, TetR family [Gluconacetobacter diazotrophicus
PAl 5]
Length=226
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/188 (27%), Positives = 73/188 (39%), Gaps = 37/188 (19%)
Query 13 IVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEALPLA 72
I+ + R+F AHGY+ + +A ++KGTLY Y KA LFAA ++ A E LP
Sbjct 23 ILEGAGRIFAAHGYEGASMSQIARGAGVSKGTLYNYFDSKATLFAAFIQQC-ACEKLP-- 79
Query 73 SELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDARAELAGIVTDLYS 132
RL + + R P G A A + + L
Sbjct 80 -------------------RLFETIGEER--------TPEDTLVGIATAMIHLTTSPLSL 112
Query 133 RLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERAGLLILPGPAPMV 192
L R ++ A P LAE ++ G + + +L R R G L +P P +
Sbjct 113 MLNR------IIVSEAATFPHLAETFWQVGPQKAIGILADWLTARTREGTLTVPDPV-LA 165
Query 193 ARTIVELC 200
A LC
Sbjct 166 AELFYTLC 173
>gi|317054217|ref|YP_004118242.1| transcriptional regulator, TetR family [Pantoea sp. At-9b]
gi|316952212|gb|ADU71686.1| transcriptional regulator, TetR family [Pantoea sp. At-9b]
Length=204
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (41%), Positives = 36/59 (62%), Gaps = 0/59 (0%)
Query 3 RSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
R++ +R AI+ A++R+F GY+RT + +VA + +K TLY Y K ALF VR
Sbjct 2 RTLTEERRQAIIDAASRLFQEMGYERTSMNEVAKRVGGSKATLYNYFVSKEALFETVVR 60
>gi|223985660|ref|ZP_03635708.1| hypothetical protein HOLDEFILI_03014 [Holdemania filiformis DSM
12042]
gi|223962351|gb|EEF66815.1| hypothetical protein HOLDEFILI_03014 [Holdemania filiformis DSM
12042]
Length=210
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (39%), Positives = 37/62 (60%), Gaps = 1/62 (1%)
Query 1 MARSI-PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAA 59
MAR+ P IV +AR+F+ GY++T VQD+ DA L+KG LY + + K + A
Sbjct 1 MARNKHPEQTLEKIVVTAARLFVEKGYEQTSVQDILDATGLSKGGLYHHFKSKEQILDAV 60
Query 60 VR 61
++
Sbjct 61 MQ 62
>gi|86139091|ref|ZP_01057662.1| possible transcriptional regulator, TetR family protein [Roseobacter
sp. MED193]
gi|85824322|gb|EAQ44526.1| possible transcriptional regulator, TetR family protein [Roseobacter
sp. MED193]
Length=212
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (32%), Positives = 48/96 (50%), Gaps = 0/96 (0%)
Query 11 SAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEALP 70
A++ A AR+F HGY++T ++D+A AL + K T+Y Y Q K + + G
Sbjct 22 QAVLQAGARLFNDHGYEQTSLEDIAAALNITKRTIYYYVQSKEDILFGCHQQGLEVLGDT 81
Query 71 LASELPVAAPVAGEIAAVVSARLAGEVTDMRLTHAL 106
+A + PV IA ++ A TD+ T A+
Sbjct 82 MAKSQDITLPVVERIALLIRGYCAWVSTDLGATIAM 117
>gi|296120826|ref|YP_003628604.1| regulatory protein TetR [Planctomyces limnophilus DSM 3776]
gi|296013166|gb|ADG66405.1| regulatory protein TetR [Planctomyces limnophilus DSM 3776]
Length=251
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (35%), Positives = 46/85 (55%), Gaps = 0/85 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEA 68
R I+ A+A +F GY T +Q++A L + KGT+Y Y K LF A V++ +
Sbjct 30 REEEILQAAAALFAEKGYAPTDLQELAQRLGVGKGTVYRYFPTKQDLFLATVKHEITRFT 89
Query 69 LPLASELPVAAPVAGEIAAVVSARL 93
L S +P AP+ +++ V+ A L
Sbjct 90 TTLESMVPRDAPLIEQMSLVIEAYL 114
>gi|289209083|ref|YP_003461149.1| TetR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
gi|288944714|gb|ADC72413.1| transcriptional regulator, TetR family [Thioalkalivibrio sp.
K90mix]
Length=201
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (45%), Positives = 35/59 (60%), Gaps = 0/59 (0%)
Query 2 ARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
AR P R + ++AA+ VF GY+ VQ+VAD + KGT+Y Y GK LF AA+
Sbjct 7 ARKTPDARKTELLAAAVMVFAERGYRSADVQEVADRAGVGKGTVYRYFSGKEDLFCAAL 65
>gi|120404948|ref|YP_954777.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119957766|gb|ABM14771.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=391
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (37%), Positives = 36/66 (55%), Gaps = 0/66 (0%)
Query 1 MARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
M R P DR I+ + R+FI G+ +++D+A+A + LY + K AL AAA+
Sbjct 1 MVRRRPKDRKQQILDQAVRLFIDRGFHSVKLEDIAEASGVTARALYRHYDNKQALLAAAI 60
Query 61 RYGDAQ 66
R G Q
Sbjct 61 RAGQEQ 66
>gi|299135716|ref|ZP_07028900.1| transcriptional regulator, TetR family [Acidobacterium sp. MP5ACTX8]
gi|298601840|gb|EFI57994.1| transcriptional regulator, TetR family [Acidobacterium sp. MP5ACTX8]
Length=201
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/93 (36%), Positives = 53/93 (57%), Gaps = 1/93 (1%)
Query 2 ARSIPAD-RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
+R + D R I+AA+ +VF G+ T+ +DVA A +AKGTLY Y + K ++A AV
Sbjct 10 SRRVLTDLRRREILAAAIKVFGKKGFADTRAEDVAAAAKIAKGTLYLYFKSKEDIYATAV 69
Query 61 RYGDAQEALPLASELPVAAPVAGEIAAVVSARL 93
+ Q +A + A+ V ++AA ++ RL
Sbjct 70 LHAIGQLQSLVAERVSEASGVRDKLAAAIAIRL 102
>gi|317052683|ref|YP_004113799.1| regulatory protein TetR [Desulfurispirillum indicum S5]
gi|316947767|gb|ADU67243.1| regulatory protein TetR [Desulfurispirillum indicum S5]
Length=211
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/78 (39%), Positives = 38/78 (49%), Gaps = 0/78 (0%)
Query 4 SIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYG 63
+ A R I+AA+ F HGY +T VQ +A L + KGT+Y Y K LF AAV G
Sbjct 15 ELQARRCEEILAAATSAFARHGYHQTDVQLIAYKLGIGKGTIYRYFSTKQKLFLAAVERG 74
Query 64 DAQEALPLASELPVAAPV 81
Q + L PV
Sbjct 75 LDQLSEYTCGLLEQEKPV 92
>gi|226941067|ref|YP_002796141.1| transcriptional regulator, TetR family [Laribacter hongkongensis
HLHK9]
gi|226715994|gb|ACO75132.1| Probable transcriptional regulator, TetR family [Laribacter hongkongensis
HLHK9]
Length=200
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/91 (32%), Positives = 47/91 (52%), Gaps = 0/91 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEA 68
R + +V +AR+F HGY+RT V+D+ +A+ L G+L+ + + K + A + G
Sbjct 11 RKAELVRVAARLFRDHGYERTTVRDIGNAVGLQSGSLFYHFRTKEEILVAVMALGITDTT 70
Query 69 LPLASELPVAAPVAGEIAAVVSARLAGEVTD 99
LAS L A A + A+V L + D
Sbjct 71 EQLASALAAARTPADRVRALVHVHLHSLLGD 101
>gi|292488240|ref|YP_003531122.1| HTH-type transcriptional regulator YezE [Erwinia amylovora CFBP1430]
gi|292899439|ref|YP_003538808.1| TetR family transcriptional regulator [Erwinia amylovora ATCC
49946]
gi|291199287|emb|CBJ46404.1| TetR-family transcriptional regulator [Erwinia amylovora ATCC
49946]
gi|291553669|emb|CBA20714.1| Uncharacterized HTH-type transcriptional regulator yezE [Erwinia
amylovora CFBP1430]
Length=210
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (41%), Positives = 34/54 (63%), Gaps = 0/54 (0%)
Query 8 DRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
+R AI+ A+A++F GY+R + ++A L +KGTLY Y K LF+A +R
Sbjct 7 ERREAIIEAAAQLFQEMGYERASMNELAKRLGGSKGTLYNYFPSKEELFSAVIR 60
>gi|312172378|emb|CBX80635.1| Uncharacterized HTH-type transcriptional regulator yezE [Erwinia
amylovora ATCC BAA-2158]
Length=210
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (41%), Positives = 34/54 (63%), Gaps = 0/54 (0%)
Query 8 DRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
+R AI+ A+A++F GY+R + ++A L +KGTLY Y K LF+A +R
Sbjct 7 ERREAIIEAAAQLFQEMGYERASMNELAKRLGGSKGTLYNYFPSKEELFSAVIR 60
>gi|71909534|ref|YP_287121.1| TetR family transcriptional regulator [Dechloromonas aromatica
RCB]
gi|71849155|gb|AAZ48651.1| transcriptional regulator, TetR family [Dechloromonas aromatica
RCB]
Length=214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (40%), Positives = 36/56 (65%), Gaps = 0/56 (0%)
Query 8 DRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYG 63
DR S ++ A+ +F+ G+ T+++DVA ++KGTLY Y + K ALF A ++ G
Sbjct 14 DRPSELLGAALHLFVEKGFTATRLEDVAAKAGVSKGTLYLYYENKEALFKAVIQEG 69
>gi|237653160|ref|YP_002889474.1| TetR family transcriptional regulator [Thauera sp. MZ1T]
gi|237624407|gb|ACR01097.1| transcriptional regulator, TetR family [Thauera sp. MZ1T]
Length=287
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (42%), Positives = 34/58 (59%), Gaps = 0/58 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYG 63
P +R I+ A+AR+F A GY RT ++D+A + L G++Y Y K LF A R G
Sbjct 103 PTERRRLILDAAARLFSAEGYDRTSIRDIARNVGLLPGSVYHYFPSKRELFLAVHREG 160
>gi|145220619|ref|YP_001131297.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|145213105|gb|ABP42509.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
Length=424
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (40%), Positives = 35/56 (63%), Gaps = 0/56 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
PA + AI+AA+ R+F HG++ T + D+A A+ L T+Y Y GK+A+ + R
Sbjct 239 PAGEYEAILAAALRLFHEHGFRETGMDDIASAIGLPASTIYRYFSGKSAVLSTIYR 294
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 2 ARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
AR P DR I ASA F GY ++D+A + + +LY + GK LF AAV
Sbjct 31 ARRRPKDRKQQIARASAEAFSELGYHAVSMEDIASRVGVTAASLYRHYSGKYDLFRAAV 89
>gi|340029676|ref|ZP_08665739.1| TetR family transcriptional regulator [Paracoccus sp. TRP]
Length=226
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 40/175 (22%)
Query 13 IVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEALPLA 72
I+ + R+F+ HG++ VQD+A A ++KGTLY Y K A+F
Sbjct 34 ILDGARRMFLTHGFEAASVQDIAKAAGVSKGTLYVYFDSKEAMF---------------- 77
Query 73 SELPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDARAELAGIVTDLYS 132
A+VS RL +R G+ T D EL I +
Sbjct 78 -------------QALVSTECG------RLQQTIRQI---GSGTEDVGHELCQIARRMIG 115
Query 133 RLARHRI--ALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERAGLLIL 185
L + + A++++ + P+LA + + G + A+ Y R G L++
Sbjct 116 TLLQCEVLAAMRMMIGAGEKFPELARLIYQAGPTRSIKALAEYFERRVAQGDLVM 170
>gi|21243568|ref|NP_643150.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
306]
gi|21109136|gb|AAM37686.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
306]
Length=224
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/171 (30%), Positives = 77/171 (46%), Gaps = 19/171 (11%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDA 65
P D+ AI+AA+ +F HG+ RT + +A+ ++K T+Y + K LF +
Sbjct 12 PHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTL----- 66
Query 66 QEALPLASE------LPVAAPVAGEIAAVVSARLAGEVTDMRLTHALRATLPPGATTGDA 119
EAL AS L + P+ +AAV A L + MR A PP
Sbjct 67 -EALAQASPNRWTALLALQGPLEQRLAAVADAVLRVSASSMREDAAYGLVRPP-LLPSQM 124
Query 120 RAELAGIVTDLYSRLARHRIALKLVDRCA---PELPDLAEVWFG--TGRNA 165
R E+ + + Y + R +A + V R A +PD + +FG TGR A
Sbjct 125 REEMWTLCFERYDTMMRTLLA-REVQRGALVIDNVPDASVHFFGLMTGRPA 174
>gi|336430521|ref|ZP_08610467.1| hypothetical protein HMPREF0994_06473 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336017853|gb|EGN47608.1| hypothetical protein HMPREF0994_06473 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length=194
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (62%), Gaps = 0/55 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
P R I+ + R+F +GY++T + D+A+A+ +A+G Y Y K ALF AAV
Sbjct 8 PEVRRQEILDTAIRLFYENGYEKTSITDIANAMHVAQGLCYRYFPSKEALFDAAV 62
>gi|315442433|ref|YP_004075312.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|315260736|gb|ADT97477.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=403
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (40%), Positives = 35/56 (63%), Gaps = 0/56 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
PA + AI+AA+ R+F HG++ T + D+A A+ L T+Y Y GK+A+ + R
Sbjct 218 PAGEYEAILAAALRLFHDHGFRETGMDDIASAIGLPASTIYRYFSGKSAVLSTIYR 273
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 2 ARSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
AR P DR I ASA F GY ++D+A + + +LY + GK LF AAV
Sbjct 10 ARRRPKDRKQQIARASAEAFSELGYHAVSMEDIASRVGVTAASLYRHYSGKYDLFRAAV 68
>gi|298250661|ref|ZP_06974465.1| transcriptional regulator, TetR family [Ktedonobacter racemifer
DSM 44963]
gi|297548665|gb|EFH82532.1| transcriptional regulator, TetR family [Ktedonobacter racemifer
DSM 44963]
Length=230
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 46/85 (55%), Gaps = 9/85 (10%)
Query 1 MARSIPADRF----SAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALF 56
M RS+ A + +AI+ +AR GY++ QD+ +AL +++G Y Y + K AL
Sbjct 1 MTRSVKAHEYAEKRNAILDVAARYITTKGYEQMTTQDILEALQISRGAFYHYFESKQALL 60
Query 57 AAAV-RYGDAQE--ALPLAS--ELP 76
A V R G+ E LP+ S E+P
Sbjct 61 MALVERIGEQAEQLVLPIVSDREMP 85
>gi|297616428|ref|YP_003701587.1| TetR family transcriptional regulator [Syntrophothermus lipocalidus
DSM 12680]
gi|297144265|gb|ADI01022.1| transcriptional regulator, TetR family [Syntrophothermus lipocalidus
DSM 12680]
Length=196
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (40%), Positives = 38/58 (66%), Gaps = 2/58 (3%)
Query 1 MARSIPAD--RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALF 56
M +S P D + + A+AR+F G+++T V ++A+A A+AKGT+Y Y +GK +F
Sbjct 1 MDKSPPQDTGKKKKLFEAAARLFAEKGFEKTTVDEIAEAAAVAKGTVYYYFKGKEDIF 58
>gi|309390058|gb|ADO77938.1| regulatory protein TetR [Halanaerobium praevalens DSM 2228]
Length=161
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (37%), Positives = 29/55 (53%), Gaps = 0/55 (0%)
Query 7 ADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
ADR I+ A +F A GY T + D+ + + +AKGT Y Y K LF ++
Sbjct 2 ADRKQEIIEAGIEIFAAKGYYNTHISDIVEVVGIAKGTFYLYFNSKKDLFITLIK 56
>gi|296117236|ref|ZP_06835828.1| transcriptional regulator, TetR family protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295976189|gb|EFG82975.1| transcriptional regulator, TetR family protein [Gluconacetobacter
hansenii ATCC 23769]
Length=298
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/216 (27%), Positives = 84/216 (39%), Gaps = 47/216 (21%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDA 65
PA R + I+ +AR+F HGY+ + +A ++KGTLY Y KA LF A +
Sbjct 54 PAKR-AQILEGAARIFAEHGYEGASMSCIARNAGVSKGTLYNYFDSKAVLFCAFIEQC-T 111
Query 66 QEALPLASELPVAAPVAGEIAAVVSARLAGEVTDM--RLTHALRATLPPGATTGDARAEL 123
+E LPL R E +M L H RA L
Sbjct 112 REKLPLM------------------FRRIDEGANMAESLEHVARA--------------L 139
Query 124 AGIVTDLYSRLARHRIALKLVDRCAPELPDLAEVWFGTGRNAQVDAVQAYLVHRERAGLL 183
++T S L +RI + A P+LA+ ++ G + A+L ++ LL
Sbjct 140 IQLITSPLS-LMLNRIIISE----AGNFPELAKTFWTNGPQKATSILAAWLARAPQSSLL 194
Query 184 ILPGPAPMVARTIVELCALWA-----VHLHFDPSPE 214
+P P A LC + L D SPE
Sbjct 195 DVPDPT-FAAEQFYALCQTHIAGRARMQLPVDTSPE 229
>gi|328884825|emb|CCA58064.1| Transcriptional regulator, TetR family [Streptomyces venezuelae
ATCC 10712]
Length=201
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (43%), Positives = 36/59 (62%), Gaps = 0/59 (0%)
Query 3 RSIPADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
R PADR + ++A AR+F AH Y ++DVA+A +++ LY + K ALFAA R
Sbjct 6 RLTPADRRAQLLAVGARLFAAHPYADVLMEDVAEAAGVSRALLYRHFPSKHALFAAVYR 64
>gi|339021214|ref|ZP_08645323.1| transcriptional regulator TetR [Acetobacter tropicalis NBRC 101654]
gi|338751699|dbj|GAA08627.1| transcriptional regulator TetR [Acetobacter tropicalis NBRC 101654]
Length=218
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (39%), Positives = 42/73 (58%), Gaps = 2/73 (2%)
Query 20 VFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQEALPLA-SELPVA 78
+F AHG++ + +A ++KGTLY Y KA LFAA V + + +E LPLA + + +
Sbjct 33 IFAAHGFEGASMSAIARESGVSKGTLYNYFTNKADLFAAFVEH-NCREKLPLALAPIQLN 91
Query 79 APVAGEIAAVVSA 91
PV + AV A
Sbjct 92 EPVKETLTAVARA 104
>gi|159045578|ref|YP_001534372.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
gi|157913338|gb|ABV94771.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length=230
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (47%), Positives = 33/52 (64%), Gaps = 0/52 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
R + IV A+ +VF AHGY + +V +VA +AKGT+Y Y K ALF A +
Sbjct 40 RPAEIVEAAFKVFCAHGYGKARVDEVAREAGIAKGTVYLYFPNKQALFQAVI 91
>gi|328949579|ref|YP_004366914.1| regulatory protein TetR [Marinithermus hydrothermalis DSM 14884]
gi|328449903|gb|AEB10804.1| regulatory protein TetR [Marinithermus hydrothermalis DSM 14884]
Length=198
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (38%), Positives = 38/61 (63%), Gaps = 0/61 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDA 65
P R + I+AA+AR+F G++RT V+ +ADA+ L G+L+ + + K A+ A + G
Sbjct 5 PRGRRAGILAAAARLFRTQGFERTTVRQIADAVGLQSGSLFHHFKSKEAILLAVMEDGVR 64
Query 66 Q 66
Q
Sbjct 65 Q 65
>gi|182676815|ref|YP_001830923.1| regulatory protein TetR [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636662|gb|ACB97434.1| regulatory protein TetR [Beijerinckia indica subsp. indica ATCC
9039]
Length=212
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (57%), Gaps = 2/80 (2%)
Query 13 IVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV-RYGDAQEALPL 71
I+AA+ +F+ +GY+RT V D+A +AK TLY + GK +F + R+ QE
Sbjct 25 IIAATRSLFVRYGYRRTSVDDIAREAGVAKATLYLHFSGKEEMFREMIRRFQLLQEERCA 84
Query 72 ASELPVAAPVAGEIAAVVSA 91
A+E + V +I A++ A
Sbjct 85 AAE-AIETSVENKIVALIDA 103
>gi|188533872|ref|YP_001907669.1| TetR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
gi|188028914|emb|CAO96780.1| TetR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
Length=210
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 33/53 (63%), Gaps = 0/53 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
R AIVAA+A++F GY+R + ++A L +K TLY Y K LF+A +R
Sbjct 8 RREAIVAAAAQLFQQMGYERASMNELAKRLGGSKATLYNYFPSKEELFSAVIR 60
>gi|187927744|ref|YP_001898231.1| TetR family transcriptional regulator [Ralstonia pickettii 12J]
gi|187724634|gb|ACD25799.1| transcriptional regulator, TetR family [Ralstonia pickettii 12J]
Length=247
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 34/53 (65%), Gaps = 0/53 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
R +VAA+ +F+A GY T+++DVA A ++KGT+Y Y K LF A V+
Sbjct 20 RPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVVQ 72
>gi|226312330|ref|YP_002772224.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
gi|226095278|dbj|BAH43720.1| putative transcriptional regulator [Brevibacillus brevis NBRC
100599]
Length=198
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (57%), Gaps = 2/65 (3%)
Query 13 IVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAA--AVRYGDAQEALP 70
I AA+ +FI GY T + DVA ++KG LY Y +GK L AA VR + +E +
Sbjct 19 IHAAAMTLFIKKGYHATSIDDVAKQAQISKGLLYNYYKGKEELLAAMVQVRIEEVKEVME 78
Query 71 LASEL 75
A++L
Sbjct 79 AATQL 83
>gi|309780805|ref|ZP_07675546.1| transcriptional regulator, TetR family [Ralstonia sp. 5_7_47FAA]
gi|308920487|gb|EFP66143.1| transcriptional regulator, TetR family [Ralstonia sp. 5_7_47FAA]
Length=255
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 34/53 (65%), Gaps = 0/53 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
R +VAA+ +F+A GY T+++DVA A ++KGT+Y Y K LF A V+
Sbjct 28 RPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVVQ 80
>gi|241662224|ref|YP_002980584.1| TetR family transcriptional regulator [Ralstonia pickettii 12D]
gi|240864251|gb|ACS61912.1| transcriptional regulator, TetR family [Ralstonia pickettii 12D]
Length=255
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 34/53 (65%), Gaps = 0/53 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
R +VAA+ +F+A GY T+++DVA A ++KGT+Y Y K LF A V+
Sbjct 28 RPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVVQ 80
>gi|334111259|ref|ZP_08485530.1| regulatory protein TetR [Methylomicrobium album BG8]
gi|333598583|gb|EGL03408.1| regulatory protein TetR [Methylomicrobium album BG8]
Length=202
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (68%), Gaps = 0/55 (0%)
Query 6 PADRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAV 60
P + +I+AA+ +VF+AHGY ++ +A+A ++K TLY + +GK LFAA +
Sbjct 5 PKSKRQSILAAARQVFLAHGYSGASMEAIAEAAPVSKPTLYSHFRGKQDLFAAVI 59
>gi|300309825|ref|YP_003773917.1| TetR family transcription regulator protein [Herbaspirillum seropedicae
SmR1]
gi|300072610|gb|ADJ62009.1| TetR family transcription regulator protein [Herbaspirillum seropedicae
SmR1]
Length=209
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (39%), Positives = 39/67 (59%), Gaps = 4/67 (5%)
Query 8 DRFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVRYGDAQE 67
DR ++AA+ ++F+ GY T+++DVA ++KGTLY Y K +LF + VR
Sbjct 16 DRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVVR----AH 71
Query 68 ALPLASE 74
LPL E
Sbjct 72 MLPLLDE 78
>gi|271501399|ref|YP_003334424.1| TetR family transcriptional regulator [Dickeya dadantii Ech586]
gi|270344954|gb|ACZ77719.1| transcriptional regulator, TetR family [Dickeya dadantii Ech586]
Length=207
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 0/53 (0%)
Query 9 RFSAIVAASARVFIAHGYQRTQVQDVADALALAKGTLYGYAQGKAALFAAAVR 61
R AIVAA+A VF+ GY+RT + +VA +K TLY Y K LF VR
Sbjct 8 RRDAIVAAAAEVFLEIGYERTSMDEVARRAGGSKATLYKYFSSKETLFETVVR 60
Lambda K H
0.321 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 346350635400
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40