BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0339c Length=832 Score E Sequences producing significant alignments: (Bits) Value gi|15607480|ref|NP_214853.1| transcriptional regulatory protein ... 1626 0.0 gi|289568249|ref|ZP_06448476.1| transcriptional regulator [Mycob... 1624 0.0 gi|289752369|ref|ZP_06511747.1| transcriptional regulatory prote... 1622 0.0 gi|289445878|ref|ZP_06435622.1| transcriptional regulator [Mycob... 1621 0.0 gi|340625370|ref|YP_004743822.1| putative transcriptional regula... 1618 0.0 gi|308369367|ref|ZP_07417516.2| transcriptional regulator [Mycob... 1590 0.0 gi|308370378|ref|ZP_07421288.2| transcriptional regulator [Mycob... 1588 0.0 gi|308231525|ref|ZP_07412770.2| transcriptional regulator [Mycob... 1588 0.0 gi|339297040|gb|AEJ49150.1| transcriptional regulatory protein [... 1587 0.0 gi|289441719|ref|ZP_06431463.1| transcriptional regulator [Mycob... 1464 0.0 gi|289572925|ref|ZP_06453152.1| transcriptional regulator [Mycob... 1179 0.0 gi|289760449|ref|ZP_06519827.1| hypothetical transcriptional reg... 1122 0.0 gi|240173092|ref|ZP_04751750.1| transcriptional regulatory prote... 1104 0.0 gi|183980638|ref|YP_001848929.1| transcriptional regulatory prot... 1058 0.0 gi|126433042|ref|YP_001068733.1| LuxR family transcriptional reg... 842 0.0 gi|108797423|ref|YP_637620.1| LuxR family transcriptional regula... 826 0.0 gi|118470595|ref|YP_885099.1| transcriptional regulatory protein... 795 0.0 gi|120401636|ref|YP_951465.1| response regulator receiver protei... 775 0.0 gi|289748108|ref|ZP_06507486.1| conserved hypothetical protein [... 739 0.0 gi|145220881|ref|YP_001131559.1| response regulator receiver pro... 701 0.0 gi|296167769|ref|ZP_06849964.1| LuxR family transcriptional regu... 575 1e-161 gi|169631370|ref|YP_001705019.1| LuxR family transcriptional reg... 570 4e-160 gi|312141360|ref|YP_004008696.1| luxr family transcriptional reg... 362 1e-97 gi|325673798|ref|ZP_08153488.1| transcriptional regulator [Rhodo... 354 3e-95 gi|326906093|gb|EGE53026.1| hypothetical protein TBPG_04072 [Myc... 350 6e-94 gi|296164181|ref|ZP_06846782.1| LuxR family transcriptional regu... 338 3e-90 gi|54027388|ref|YP_121630.1| putative transcriptional regulator ... 321 3e-85 gi|229492067|ref|ZP_04385879.1| transcriptional regulator, LuxR ... 320 7e-85 gi|111022450|ref|YP_705422.1| transcriptional regulator [Rhodoco... 320 8e-85 gi|226364960|ref|YP_002782742.1| LuxR family transcriptional reg... 317 6e-84 gi|311742251|ref|ZP_07716061.1| LuxR family transcriptional regu... 309 1e-81 gi|226304831|ref|YP_002764789.1| LuxR family transcriptional reg... 307 5e-81 gi|257057630|ref|YP_003135462.1| response regulator containing a... 289 2e-75 gi|333921741|ref|YP_004495322.1| transcriptional regulator [Amyc... 276 1e-71 gi|134096906|ref|YP_001102567.1| LuxR family transcriptional reg... 275 3e-71 gi|331700300|ref|YP_004336539.1| regulatory protein LuxR [Pseudo... 272 2e-70 gi|256374712|ref|YP_003098372.1| LuxR family transcriptional reg... 261 3e-67 gi|300783411|ref|YP_003763702.1| LuxR family transcriptional reg... 254 3e-65 gi|220913827|ref|YP_002489136.1| LuxR family transcriptional reg... 254 4e-65 gi|119962298|ref|YP_948980.1| transcriptional regulator [Arthrob... 249 2e-63 gi|302524779|ref|ZP_07277121.1| predicted protein [Streptomyces ... 219 2e-54 gi|343926326|ref|ZP_08765835.1| putative LuxR family transcripti... 214 5e-53 gi|325964551|ref|YP_004242457.1| DNA-binding protein with HTH do... 214 6e-53 gi|159037265|ref|YP_001536518.1| LuxR family transcriptional reg... 156 2e-35 gi|145594196|ref|YP_001158493.1| regulatory protein LuxR [Salini... 155 2e-35 gi|326902164|gb|EGE49097.1| LOW QUALITY PROTEIN: transcriptional... 143 1e-31 gi|325001456|ref|ZP_08122568.1| LuxR family transcriptional regu... 140 1e-30 gi|284992805|ref|YP_003411359.1| two component LuxR family trans... 63.2 2e-07 gi|297193410|ref|ZP_06910808.1| large transcriptional regulator ... 61.6 5e-07 gi|284989383|ref|YP_003407937.1| LuxR family transcriptional reg... 61.6 6e-07 >gi|15607480|ref|NP_214853.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839725|ref|NP_334762.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31791517|ref|NP_854010.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] 37 more sequence titles Length=832 Score = 1626 bits (4211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 831/832 (99%), Positives = 832/832 (100%), Gaps = 0/832 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV Sbjct 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH Sbjct 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ Sbjct 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 Query 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST Sbjct 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 Query 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA Sbjct 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 Query 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY Sbjct 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 Query 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 >gi|289568249|ref|ZP_06448476.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289748822|ref|ZP_06508200.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289542002|gb|EFD45651.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289689409|gb|EFD56838.1| transcriptional regulator [Mycobacterium tuberculosis T92] Length=832 Score = 1624 bits (4205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 830/832 (99%), Positives = 831/832 (99%), Gaps = 0/832 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV Sbjct 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH Sbjct 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ Sbjct 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 Query 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 VDQLQHTLDQALTLLD LGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST Sbjct 601 VDQLQHTLDQALTLLDLLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 Query 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA Sbjct 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 Query 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY Sbjct 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 Query 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 >gi|289752369|ref|ZP_06511747.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289692956|gb|EFD60385.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] Length=832 Score = 1622 bits (4199), Expect = 0.0, Method: Compositional matrix adjust. Identities = 829/832 (99%), Positives = 830/832 (99%), Gaps = 0/832 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV Sbjct 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGD VRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH Sbjct 481 IHAGDQVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ Sbjct 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 Query 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST Sbjct 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 Query 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 LAQALSDAGRTWLRVLAENVDADEVT AARSLSHVGLTSDATRLAGQAALQTSDARVSGA Sbjct 661 LAQALSDAGRTWLRVLAENVDADEVTVAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 Query 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY Sbjct 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 Query 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 >gi|289445878|ref|ZP_06435622.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289418836|gb|EFD16037.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length=832 Score = 1621 bits (4197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 829/832 (99%), Positives = 830/832 (99%), Gaps = 0/832 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHRALRALTMALERDRPRISLGPL VAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV Sbjct 121 AREHHRALRALTMALERDRPRISLGPLQVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH Sbjct 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ Sbjct 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 Query 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST Sbjct 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 Query 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA Sbjct 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 Query 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 MLQLARDLKLGN FGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY Sbjct 721 MLQLARDLKLGNAFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 Query 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 >gi|340625370|ref|YP_004743822.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340003560|emb|CCC42681.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] Length=832 Score = 1618 bits (4191), Expect = 0.0, Method: Compositional matrix adjust. Identities = 826/832 (99%), Positives = 829/832 (99%), Gaps = 0/832 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALL+LANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLDLANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHR+LRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV Sbjct 121 AREHHRSLRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVA HDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 361 RAAAVRVAASVAAHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAA AGTHLH Sbjct 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAAGAGTHLH 540 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ Sbjct 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 Query 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST Sbjct 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 Query 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 LAQALSDAGRTWLRVLAENVD DEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA Sbjct 661 LAQALSDAGRTWLRVLAENVDVDEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 Query 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY Sbjct 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 Query 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 >gi|308369367|ref|ZP_07417516.2| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308371645|ref|ZP_07425656.2| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308372864|ref|ZP_07430189.2| transcriptional regulator [Mycobacterium tuberculosis SUMu005] 11 more sequence titles Length=816 Score = 1590 bits (4116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 815/816 (99%), Positives = 816/816 (100%), Gaps = 0/816 (0%) Query 17 VTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 76 +TDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC Sbjct 1 MTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 60 Query 77 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 136 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE Sbjct 61 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 120 Query 137 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 196 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT Sbjct 121 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 180 Query 197 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 256 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG Sbjct 181 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 240 Query 257 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 316 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL Sbjct 241 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 300 Query 317 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 376 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG Sbjct 301 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 360 Query 377 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 436 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA Sbjct 361 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 420 Query 437 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 496 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA Sbjct 421 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 480 Query 497 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 556 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR Sbjct 481 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 540 Query 557 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 616 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD Sbjct 541 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 600 Query 617 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 676 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL Sbjct 601 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 660 Query 677 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 736 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE Sbjct 661 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 720 Query 737 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH 796 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH Sbjct 721 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH 780 Query 797 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 816 >gi|308370378|ref|ZP_07421288.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308373975|ref|ZP_07434375.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308376366|ref|ZP_07438601.2| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308332184|gb|EFP21035.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308343450|gb|EFP32301.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308351284|gb|EFP40135.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] Length=816 Score = 1588 bits (4113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 814/816 (99%), Positives = 815/816 (99%), Gaps = 0/816 (0%) Query 17 VTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 76 +TDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC Sbjct 1 MTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 60 Query 77 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 136 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE Sbjct 61 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 120 Query 137 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 196 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT Sbjct 121 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 180 Query 197 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 256 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG Sbjct 181 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 240 Query 257 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 316 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL Sbjct 241 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 300 Query 317 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 376 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG Sbjct 301 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 360 Query 377 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 436 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA Sbjct 361 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 420 Query 437 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 496 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA Sbjct 421 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 480 Query 497 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 556 VRAGADPLFQRRHLL SGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR Sbjct 481 VRAGADPLFQRRHLLFSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 540 Query 557 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 616 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD Sbjct 541 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 600 Query 617 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 676 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL Sbjct 601 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 660 Query 677 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 736 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE Sbjct 661 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 720 Query 737 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH 796 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH Sbjct 721 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH 780 Query 797 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 816 >gi|308231525|ref|ZP_07412770.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308378609|ref|ZP_07483198.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308379751|ref|ZP_07487435.2| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308216938|gb|EFO76337.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308359844|gb|EFP48695.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308363744|gb|EFP52595.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] Length=816 Score = 1588 bits (4113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 814/816 (99%), Positives = 816/816 (100%), Gaps = 0/816 (0%) Query 17 VTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 76 +TDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC Sbjct 1 MTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 60 Query 77 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 136 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE Sbjct 61 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 120 Query 137 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 196 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT Sbjct 121 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 180 Query 197 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 256 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG Sbjct 181 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 240 Query 257 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 316 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL Sbjct 241 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 300 Query 317 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 376 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG Sbjct 301 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 360 Query 377 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 436 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA Sbjct 361 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 420 Query 437 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 496 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA Sbjct 421 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 480 Query 497 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 556 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR Sbjct 481 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 540 Query 557 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 616 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD Sbjct 541 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 600 Query 617 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 676 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL Sbjct 601 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 660 Query 677 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 736 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE Sbjct 661 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 720 Query 737 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH 796 PPSGAGDTEPASGTPPAPRQPPAGSPLSDR+REVAELLLLGMPYRDIGARLFISAKTVEH Sbjct 721 PPSGAGDTEPASGTPPAPRQPPAGSPLSDRDREVAELLLLGMPYRDIGARLFISAKTVEH 780 Query 797 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 816 >gi|339297040|gb|AEJ49150.1| transcriptional regulatory protein [Mycobacterium tuberculosis CCDC5180] Length=816 Score = 1587 bits (4110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 814/816 (99%), Positives = 815/816 (99%), Gaps = 0/816 (0%) Query 17 VTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 76 +TDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC Sbjct 1 MTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLAC 60 Query 77 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 136 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE Sbjct 61 PPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALE 120 Query 137 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 196 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT Sbjct 121 RDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDT 180 Query 197 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 256 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG Sbjct 181 LLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVG 240 Query 257 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 316 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL Sbjct 241 NAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARL 300 Query 317 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 376 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG Sbjct 301 YRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 360 Query 377 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 436 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA Sbjct 361 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLA 420 Query 437 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 496 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPV ARSVIGRA Sbjct 421 EGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVLARSVIGRA 480 Query 497 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 556 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR Sbjct 481 VRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISR 540 Query 557 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 616 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD Sbjct 541 RTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLD 600 Query 617 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 676 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL Sbjct 601 SLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVL 660 Query 677 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 736 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE Sbjct 661 AENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGE 720 Query 737 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH 796 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH Sbjct 721 PPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEH 780 Query 797 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 781 HVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 816 >gi|289441719|ref|ZP_06431463.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289414638|gb|EFD11878.1| transcriptional regulator [Mycobacterium tuberculosis T46] Length=831 Score = 1464 bits (3790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 797/832 (96%), Positives = 798/832 (96%), Gaps = 1/832 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSA A A Sbjct 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSAAAVGRPSGAGR 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 R D L VSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ERRRRRYPARP-ACDGRLEPQAVRGTRVSDVAAALGISVTDARGLVDRAHASGLIESSHT 239 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 240 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 299 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 300 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 359 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 360 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 419 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 420 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 479 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH Sbjct 480 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 539 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ Sbjct 540 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 599 Query 601 VDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 660 VDQLQHTLDQALTLLD LGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST Sbjct 600 VDQLQHTLDQALTLLDLLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHST 659 Query 661 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 720 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA Sbjct 660 LAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGA 719 Query 721 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 780 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY Sbjct 720 MLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPY 779 Query 781 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 780 RDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 831 >gi|289572925|ref|ZP_06453152.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289537356|gb|EFD41934.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length=696 Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 606/607 (99%), Positives = 607/607 (100%), Gaps = 0/607 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV Sbjct 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH Sbjct 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ Sbjct 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQ 600 Query 601 VDQLQHT 607 VDQLQHT Sbjct 601 VDQLQHT 607 >gi|289760449|ref|ZP_06519827.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|289707955|gb|EFD71971.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] Length=697 Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 578/579 (99%), Positives = 579/579 (100%), Gaps = 0/579 (0%) Query 1 VQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 +QHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA Sbjct 1 MQHRGCKNRGQAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLA 60 Query 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE Sbjct 61 AARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAE 120 Query 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV Sbjct 121 AREHHRALRALTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKV 180 Query 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT Sbjct 181 ALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHT 240 Query 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT Sbjct 241 AAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILT 300 Query 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE Sbjct 301 RYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK Sbjct 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA Sbjct 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAA 480 Query 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH Sbjct 481 IHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLH 540 Query 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYS 579 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYS Sbjct 541 RRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYS 579 >gi|240173092|ref|ZP_04751750.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=818 Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 596/813 (74%), Positives = 670/813 (83%), Gaps = 7/813 (0%) Query 11 QAYDASVTDSLTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSG 70 Q DASV+ S +VPPAAR + +LANA PVK L+ GGIGTGKT++L AAR+ LRR+G Sbjct 11 QYGDASVSPSPADVPPAARGVVDDLANAAKTPVKALVCGGIGTGKTSLLIAAREALRRAG 70 Query 71 LTVLACPPPDGEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRA 130 LTVL PP D +P + V+DD LLTD+EL+RLTER ++ TVV A E + ALRA Sbjct 71 LTVLTRPPRDDDPSDAVFVVDDTHLLTDSELVRLTERASEPHATVVVATEDHQQDPALRA 130 Query 131 LTMALERDRPRISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLD 190 LT A+ER+RPRISLGPL VAEHLRD TAGLPFLIHAVS A PAQAAK AL+ERLRRLD Sbjct 131 LTTAIERERPRISLGPLTVAEHLRDYTAGLPFLIHAVSDGAHPPAQAAKFALVERLRRLD 190 Query 191 EPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDA 250 EPTLD LL+MSL+ LGV+DVAAALG+S DAR LVDRA+ASGL+ SH AFLQ+VHDA Sbjct 191 EPTLDALLLMSLSLGLGVTDVAAALGVSTADARRLVDRAYASGLVIPSHPPAFLQAVHDA 250 Query 251 IAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDAS 310 IA I+GNAHHH++ETSLLR+Q DISP+S +LAL+LAEHGL D+RLA IL+RYA D S Sbjct 251 IALIIGNAHHHQIETSLLRTQFDISPISQDLALQLAEHGLHDDRLAAILSRYAVVEGD-S 309 Query 311 VRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAAS 370 R ARLYRAAV+AGA GLT RLADALART DCT AA LAD LLSSPD+ ERAAAVR+AAS Sbjct 310 ARSARLYRAAVNAGAAGLTSRLADALARTADCTTAAALADKLLSSPDSAERAAAVRIAAS 369 Query 371 VAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAAR 430 +A HDGNT AAELFGWLGPHPD + SAA IV AA GDLA AR LR+KD+ PPTMAAR Sbjct 370 IASHDGNTAQAAELFGWLGPHPDAVAGSAAAIVLAATGDLAAARDALRIKDSSPPTMAAR 429 Query 431 CARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRAR 490 +R LAEGLLLTMDQPYP+AMAKLGQA+A +QS+++ +PDSPAALV LAAIH GDPVRAR Sbjct 430 ASRGLAEGLLLTMDQPYPIAMAKLGQALAAQQSVTEAMPDSPAALVALAAIHGGDPVRAR 489 Query 491 SVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAAL 550 SVIGRAVRAG D +F+ RHLLLS WIKMQ+GQLPSA+A A+AGT LHRRDALWAAAL Sbjct 490 SVIGRAVRAGGDAVFRSRHLLLSAWIKMQDGQLPSAAA--DVAAAGTELHRRDALWAAAL 547 Query 551 QTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQ 610 AI+RRTGD G L + W AME LAEYS+DLFALLPL ELWVAA R+RQVDQL++ +++ Sbjct 548 HIAIARRTGDTGVLHKQWSTAMEVLAEYSIDLFALLPLAELWVAATRIRQVDQLEYPVNE 607 Query 611 ALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGR 670 A LLDSLG+P +WSNSLHWAGVHAGILA+SP+SVAPHGQAL A AHS LAQ LS AGR Sbjct 608 AFALLDSLGSPPVWSNSLHWAGVHAGILASSPDSVAPHGQALAAAAAHSGLAQILSGAGR 667 Query 671 TWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKL 730 TWLRVLA+ VDADEVT AARSLS VGLTSDATRLAGQAALQ SDARVSGAMLQLARDLKL Sbjct 668 TWLRVLADQVDADEVTVAARSLSRVGLTSDATRLAGQAALQASDARVSGAMLQLARDLKL 727 Query 731 GNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFIS 790 G E EPA+G APRQPPAG+PLSDREREVAELLLLGMPYRDIG+RLFIS Sbjct 728 GTGCEE----VIGLEPAAGPSAAPRQPPAGTPLSDREREVAELLLLGMPYRDIGSRLFIS 783 Query 791 AKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAP 823 AKTVEHHVARIR+RLGA SRSEMLSMLRAML P Sbjct 784 AKTVEHHVARIRRRLGAESRSEMLSMLRAMLTP 816 >gi|183980638|ref|YP_001848929.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183173964|gb|ACC39074.1| transcriptional regulatory protein [Mycobacterium marinum M] Length=817 Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/798 (75%), Positives = 656/798 (83%), Gaps = 4/798 (0%) Query 24 VPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEP 83 VP AR + ELA+ VK LI GGIGTGKTTVL RD LRR+G+TV A P D +P Sbjct 20 VPAPARGLIDELASGGATSVKALIGGGIGTGKTTVLGTVRDALRRAGVTVRAHPTKDCDP 79 Query 84 PETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRIS 143 E ALV+DDA LL + ELLRL E VAD R TVV A+ + H ALRAL A+ER+RP+IS Sbjct 80 SEVALVVDDAHLLAEDELLRLAEWVADPRATVVVGAQLHQQHHALRALATAIERERPQIS 139 Query 144 LGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDTLLMMSLT 203 LGPLPVA+ LRD TAG+PFL+ AVS +P AA+ ALIERLRRLDEPTLD LL+MSLT Sbjct 140 LGPLPVADQLRDSTAGVPFLVEAVSRGTGSPVPAARFALIERLRRLDEPTLDALLIMSLT 199 Query 204 HELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVGNAHHHEV 263 E G +DVAAALG+S +DAR LVDR HASGL+E SH AF+Q VH+A+ IVGN HHHEV Sbjct 200 QESGTTDVAAALGVSTSDARQLVDRVHASGLVEPSHPPAFVQLVHEAVVHIVGNTHHHEV 259 Query 264 ETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARLYRAAVHA 323 ETSLLRSQLDISP+S +LALRLAEHGL ERLA L YA+ R + ARLYRAAV A Sbjct 260 ETSLLRSQLDISPMSQDLALRLAEHGLHGERLATALAGYASAARGEPAQTARLYRAAVAA 319 Query 324 GAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDGNTGHAAE 383 GA GL +LADALARTGDC AA LAD+LL S D+ +RAAAVR+AASVA H+GN G AAE Sbjct 320 GATGLKSQLADALARTGDCAGAAELADELLGSADSAQRAAAVRIAASVAAHEGNAGQAAE 379 Query 384 LFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLAEGLLLTM 443 LFGWLGP+PD +V S+A IV AA GDL TARA L +KD GPPTMAAR AR LA+GLLLTM Sbjct 380 LFGWLGPYPDAVVGSSAAIVLAAVGDLQTARAALDVKDTGPPTMAARAARGLADGLLLTM 439 Query 444 DQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRAVRAGADP 503 QPYPVAMAKLGQAIA EQ +++ PDSPAALVTLAAIH GDPVRARSVIGRAVR+G D Sbjct 440 GQPYPVAMAKLGQAIAAEQPITEATPDSPAALVTLAAIHGGDPVRARSVIGRAVRSGTDQ 499 Query 504 LFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISRRTGDIGA 563 +F +RHLLLSGWIKMQEGQLPSASADVAAA +G +HRRDALWAAAL+TAI+RR+GD GA Sbjct 500 VFHQRHLLLSGWIKMQEGQLPSASADVAAACSGAPMHRRDALWAAALETAIARRSGDAGA 559 Query 564 LQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPAL 623 LQ+HW AAME L EYSLDLFALLPLGELWVAAAR RQVDQLQHTLDQA +LL+SLGNP L Sbjct 560 LQKHWNAAMEVLGEYSLDLFALLPLGELWVAAARNRQVDQLQHTLDQAFSLLNSLGNPVL 619 Query 624 WSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVLAENVDAD 683 WSNSLHWAGVHAGILANSP +VAPHGQALGA A + LA ALS AGRTWLRVLA+ VD D Sbjct 620 WSNSLHWAGVHAGILANSPGAVAPHGQALGAAAAGNALAHALSVAGRTWLRVLADQVDVD 679 Query 684 EVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGD 743 EVT AARSLS VGLTSDATRLAGQAALQT+DARVSGAMLQLARDLKL + F EP D Sbjct 680 EVTVAARSLSGVGLTSDATRLAGQAALQTADARVSGAMLQLARDLKLASGFDEPT----D 735 Query 744 TEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQ 803 EP +G PAPRQPPAGSPLSDREREVAELLLLGMPYRDIGA+LFISAKTVEHHVARIR+ Sbjct 736 AEPVAGAAPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGAQLFISAKTVEHHVARIRR 795 Query 804 RLGAGSRSEMLSMLRAML 821 RLGAGSRSEMLSMLRAML Sbjct 796 RLGAGSRSEMLSMLRAML 813 >gi|126433042|ref|YP_001068733.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126232842|gb|ABN96242.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length=845 Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/837 (60%), Positives = 599/837 (72%), Gaps = 40/837 (4%) Query 23 EVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGE 82 E+P AAR A+ + P P KVL+TGGIGTGK+TVLAA R LR +G VL+ P + Sbjct 11 ELPAAAREAVTAIEADPAAPAKVLVTGGIGTGKSTVLAAVRAALRSAGRPVLSRPRRPDD 70 Query 83 PPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRI 142 P E A+V+DDA LL +L RLT+ VADS TVV A + H+ LRAL ALER+ P + Sbjct 71 PAEAAVVVDDAHLLDPGDLDRLTDLVADSGSTVVIATQPLAHNAPLRALVTALERENPAV 130 Query 143 SLGPLPVAE-------------------HLRDCTAGLPFLIH----AVSARAQAPAQAAK 179 +LG + E L TAGLPFL+ AV A A QAA+ Sbjct 131 ALGSVTAVEVGRAAAATLGAAPAPEVVRLLTAVTAGLPFLLRPALTAVGDGAAAVRQAAR 190 Query 180 VALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSH 239 +ALIERLRRLDEP LDTLL+ SL+ ELG DVAAAL I A +VDRA ASGL+E ++ Sbjct 191 IALIERLRRLDEPLLDTLLVASLSPELGPDDVAAALHIPSDAALAVVDRARASGLLEPAY 250 Query 240 TAAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADIL 299 +FL++VH+ IAQ+VG A HH++E SLLRSQL++S ++A+LALR+AEHGLRDERL L Sbjct 251 HHSFLRTVHEGIAQLVGAARHHDIEVSLLRSQLELSTLTADLALRMAEHGLRDERLGTAL 310 Query 300 TRYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDAT 359 AA T + R ARLYRAA AGA L+ +LADALA TGDC A +AD+LL+S D Sbjct 311 ADLAAQTANDPARSARLYRAAADAGATALSAQLADALALTGDCATAGRIADELLTSQDPD 370 Query 360 ERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRL 419 ERAAAVR++AS+A+HDG+ HA +LF WLGP PD ++S+A T+ A D TAR R Sbjct 371 ERAAAVRISASIAMHDGSAAHAFDLFRWLGPSPDALLSAAGTVAALAAADGDTARELART 430 Query 420 KDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLA 479 + AGPPT AR AR+LA+GL+L++DQPYPVA A+LGQ++ + + V PD+PAALVTLA Sbjct 431 QAAGPPTSIARAARSLADGLMLSLDQPYPVAAARLGQSLNADAGV--VTPDTPAALVTLA 488 Query 480 AIHAGDPVRARSVIGRAVRAGADP------LFQRRHLLLSGWIKMQEGQLPSASADVAAA 533 A+H GDPVRARSV+ RAVR+G D RH LL GW MQ+GQL +A+ + Sbjct 489 ALHGGDPVRARSVMSRAVRSGRDDGSGDAIFVTYRHRLLLGWTHMQDGQLQAAATALPRP 548 Query 534 SAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWV 593 +A LHRRDALWAAALQTAI+RR+GD GA+Q HWY+AME LAEYS+DLFALLPLGELWV Sbjct 549 TA--DLHRRDALWAAALQTAIARRSGDSGAMQMHWYSAMEVLAEYSVDLFALLPLGELWV 606 Query 594 AAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALG 653 AAAR+RQV++LQHTLD+A LL +LG+P LWS LHWAGVHAGILANSPE+VAPHGQAL Sbjct 607 AAARLRQVERLQHTLDEAFALLTALGDPLLWSVPLHWAGVHAGILANSPEAVAPHGQALT 666 Query 654 AMV----AHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAA 709 A A S A+AL+ AGRTWLRVLA +VD DEV+AAAR L+ G T DATRLAGQAA Sbjct 667 AASRDGRAQSAFAKALASAGRTWLRVLANHVDVDEVSAAARGLAQFGHTWDATRLAGQAA 726 Query 710 LQTSDARVSGAMLQLARDLKLGNDFGEPP---SGAGDTEPASGTPPAPRQPPAGSPLSDR 766 LQT D RVS AMLQLARDLK E P +G G PA+ T A A + LS+R Sbjct 727 LQTPDGRVSQAMLQLARDLKQSVAGAEVPTETTGMGALTPAAATAAATPARAASAQLSER 786 Query 767 EREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAP 823 EREVAELLLLGMPYRDIGA+LFISAKTVEHHVARIR+RLGA SRSEMLSMLRA+LAP Sbjct 787 EREVAELLLLGMPYRDIGAQLFISAKTVEHHVARIRRRLGAESRSEMLSMLRALLAP 843 >gi|108797423|ref|YP_637620.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866507|ref|YP_936459.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108767842|gb|ABG06564.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692596|gb|ABL89669.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length=845 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/837 (59%), Positives = 595/837 (72%), Gaps = 40/837 (4%) Query 23 EVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGE 82 E+P AAR A+ + P P KVL+TGGIGTGK+TVLAA R LR +G VL+ P + Sbjct 11 ELPAAAREAVTAIEADPAAPAKVLVTGGIGTGKSTVLAAVRAALRSAGRPVLSRPRRPDD 70 Query 83 PPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRI 142 P E A+V+DDA LL +L RLT+ VADS TVV A + H+ LRAL ALER+ P + Sbjct 71 PAEAAVVVDDAHLLDPGDLDRLTDLVADSGSTVVIATQPLAHNAPLRALVTALERENPAV 130 Query 143 SLGPLPVAE-------------------HLRDCTAGLPFLIHAVSARAQAPA----QAAK 179 +LG + E L TAGLPFL+ A A QAA+ Sbjct 131 ALGSVTAVEVGRAAAATLGAAPAPEVVRLLTAVTAGLPFLLRPALAAVGDGAAAVRQAAR 190 Query 180 VALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSH 239 +ALIERLRRLDEP LDTLL+ SL+ ELG DVAAAL I A +VDRA ASGL+E ++ Sbjct 191 IALIERLRRLDEPLLDTLLVASLSPELGPDDVAAALHIPSDAALAVVDRARASGLLEPAY 250 Query 240 TAAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADIL 299 +FL++VH+ IAQ+VG A HH++E SLL SQL++S ++A+LALR+AEHGLRDERL L Sbjct 251 HHSFLRTVHEGIAQLVGAARHHDIEVSLLCSQLELSTLTADLALRMAEHGLRDERLGTAL 310 Query 300 TRYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDAT 359 AA T + R ARLYRAA AGA L+ +LADALA TGDC A +AD+LL+S D Sbjct 311 ADLAAQTANDPARSARLYRAAADAGATALSAQLADALALTGDCATAGRIADELLTSQDPD 370 Query 360 ERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRL 419 ERAAAVR++AS+A+HDG+ A +LF WLGP PD ++S+A T+ A D TAR R Sbjct 371 ERAAAVRISASIAMHDGSAAQAFDLFRWLGPSPDALLSAAGTVAALAAADGDTARELART 430 Query 420 KDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLA 479 + GPPT AR AR+LA+GL+L++DQPYPVA A+LGQ++ + + V PD+PAALVTLA Sbjct 431 QATGPPTSIARAARSLADGLMLSLDQPYPVAAARLGQSLNADAGV--VTPDTPAALVTLA 488 Query 480 AIHAGDPVRARSVIGRAVRAGADP------LFQRRHLLLSGWIKMQEGQLPSASADVAAA 533 A+H GDPVRARSV+GRAVR+G D RH LL GW MQ+GQL +A+ + Sbjct 489 ALHGGDPVRARSVMGRAVRSGRDDGSGDAIFVTYRHRLLLGWTHMQDGQLQAAATALPRP 548 Query 534 SAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWV 593 +A LHRRDALWAAALQTAI+RR+GD GA+Q HWY+AME LAEYS+DLFALLPLGELWV Sbjct 549 TA--DLHRRDALWAAALQTAIARRSGDSGAMQMHWYSAMEVLAEYSVDLFALLPLGELWV 606 Query 594 AAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALG 653 AAAR+RQV++LQHTLD+A LL +LG+P LWS LHWAGVHAGILANSPE+VAPHGQAL Sbjct 607 AAARLRQVERLQHTLDEAFALLTALGDPVLWSVPLHWAGVHAGILANSPEAVAPHGQALT 666 Query 654 AMV----AHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAA 709 A A S A+AL+ AGRTWLRVLA +VD DEV+AAAR L+ G T DATRLAGQAA Sbjct 667 AASRDGRAQSAFAKALASAGRTWLRVLANHVDVDEVSAAARGLAQFGHTWDATRLAGQAA 726 Query 710 LQTSDARVSGAMLQLARDLK---LGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDR 766 LQT D RVS AMLQ+ARDLK G + +G PA+ TP A A + LS+R Sbjct 727 LQTPDGRVSQAMLQIARDLKQSVAGAEVLTETTGMDAPTPAAATPAATPARAAPAQLSER 786 Query 767 EREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAP 823 EREVAELLLLGMPYRDIGA+LFISAKTVEHHVARIR+RLGA SRSEMLSMLRA+LAP Sbjct 787 EREVAELLLLGMPYRDIGAQLFISAKTVEHHVARIRRRLGAESRSEMLSMLRALLAP 843 >gi|118470595|ref|YP_885099.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118171882|gb|ABK72778.1| putative transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] Length=836 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/830 (60%), Positives = 586/830 (71%), Gaps = 43/830 (5%) Query 30 RALLE-LANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETAL 88 RA+ E LA P+ P K+L++GGIGTGK+TVLAA R TLR +G TVL PP + Sbjct 14 RAVQEMLAGVPSRPAKLLVSGGIGTGKSTVLAAVRATLREAGRTVLTRPPRPDDDQGAVF 73 Query 89 VIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRISLGPLP 148 VIDDA L D E+ LTER D TVV AAE H LRAL ALER+ P ++LGP+ Sbjct 74 VIDDAHHLADDEIDCLTERSTDPSSTVVVAAEPLAHRPVLRALATALERENPIVALGPMS 133 Query 149 VAEHLR-------------------DCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRL 189 AE R TAGLPFL+ AV+ A P +AA+ ALIER+R L Sbjct 134 TAEVGRLLTATLGSPPPPDTVRAVLAVTAGLPFLVRAVATSAAEPEEAARYALIERVRHL 193 Query 190 DEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHD 249 E T DTLL+ SL+ +LG DVA AL +S TDA LVDRA A GL+E ++ FL+ VH Sbjct 194 GEQTRDTLLLTSLSLDLGPDDVAGALRVSGTDASVLVDRARAGGLVEPAYDKRFLRLVHT 253 Query 250 AIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDA 309 ++AQI G + HH++E +LL SQL+ + +S ELA+RLAEHG+RD+RLA LT +A R Sbjct 254 SVAQIAGTSRHHDIEIALLHSQLEKATLSPELAVRLAEHGVRDDRLAAALTDHAVQVRGQ 313 Query 310 SVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAA 369 R ARLYRAA AG+ L RLADALA +GDC A +ADDLLSS D ERAAAVR+AA Sbjct 314 PARAARLYRAAARAGSAALNARLADALALSGDCATAGRMADDLLSSDDPAERAAAVRIAA 373 Query 370 SVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAA 429 S+A+HDG+ AA+LF WLGP+PD V SA T+ A GD ARA L + +GPPT AA Sbjct 374 SIAMHDGSAAQAADLFRWLGPYPDAAVGSAGTVALLAAGDAEAARAALNTELSGPPTSAA 433 Query 430 RCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRA 489 R AR+LAEGL+ ++DQP+ +A+LGQA+ + V PD+PAALV LAA+H GD VRA Sbjct 434 RAARSLAEGLVASLDQPFTTTVARLGQAVTADPHTDSVGPDTPAALVALAALHGGDSVRA 493 Query 490 RSVIGRAVRAGAD----------PLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHL 539 RSVIGRAVR GA P + RH LL GW+KM +GQL +A ADV+A +G L Sbjct 494 RSVIGRAVRTGAPGAENGTPPPAPFWAARHRLLLGWVKMLDGQLTAAGADVSAVESGPPL 553 Query 540 HRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMR 599 HRRDALWAAAL+TAI+RR+GD GA+Q+HW+AAME LAEYS+DL++LLPLGELWVAAARMR Sbjct 554 HRRDALWAAALRTAIARRSGDSGAIQRHWFAAMEVLAEYSIDLYSLLPLGELWVAAARMR 613 Query 600 QVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHS 659 ++D+L+H L +A LLD+LG P LWS LHWAGVHAGILANSP +VAPHGQAL A HS Sbjct 614 RIDRLEHPLAEAFGLLDALGKPVLWSMPLHWAGVHAGILANSPGAVAPHGQALTAAAGHS 673 Query 660 TLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSG 719 A+AL+ AGRTWLRVLA +VD DEV AAAR L+ GLT DATRLA QAALQTSDARVS Sbjct 674 PFARALAGAGRTWLRVLANHVDVDEVAAAARGLAQFGLTWDATRLASQAALQTSDARVSQ 733 Query 720 AMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSP-----LSDREREVAELL 774 AMLQLARDLK SGA D A TP AP AG+P LSDREREVAELL Sbjct 734 AMLQLARDLKQ--------SGAADDVSAPETPRAPVATQAGAPAGSARLSDREREVAELL 785 Query 775 LLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPE 824 LLGMPYRDIG +LFISAKTVEHHVARIR+RLGA SRSEMLSMLRAM +P+ Sbjct 786 LLGMPYRDIGNQLFISAKTVEHHVARIRRRLGAESRSEMLSMLRAMFSPQ 835 >gi|120401636|ref|YP_951465.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119954454|gb|ABM11459.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length=843 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/830 (59%), Positives = 580/830 (70%), Gaps = 32/830 (3%) Query 21 LTEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPD 80 L+++PPAAR A+ + P PVK+++ GG G+GK+TVL A R LR S V + P Sbjct 9 LSDLPPAAREAVAAMEADPHAPVKLVVVGGAGSGKSTVLTAVRAVLRASDRPVRSRPRGG 68 Query 81 GEPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRP 140 +T V+DDA LL EL +LTE V D VV A E HH LR L ALER+ Sbjct 69 ETAEDTVTVVDDAHLLDRAELDQLTELVTDPTAGVVIATEPLAHHGPLRELVTALEREHA 128 Query 141 RISLGPLPVAEHLR-------------------DCTAGLPFLIH-AVSARAQAPA---QA 177 ++LGPLP E R TAGLPFL+ A++A A QA Sbjct 129 AVALGPLPPVEVSRIAAAALGLPAAPELVRALLSATAGLPFLLRPALAAAGDGVASMRQA 188 Query 178 AKVALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIES 237 A+ LIERLR DE LDTLL+ SL+ +LG DVAAAL +S +A VDRA ASGLIE Sbjct 189 ARFGLIERLRGFDERLLDTLLVSSLSFDLGPDDVAAALRLSSQEALTAVDRARASGLIEP 248 Query 238 SHTAAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLAD 297 +H AF +++HDA+AQ+VG A HH++E S+L SQL++S ++A+LALRLAEHGLRDERLA Sbjct 249 AHPLAFQRTLHDAVAQVVGAARHHDIEVSVLLSQLELSTLTADLALRLAEHGLRDERLAT 308 Query 298 ILTRYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPD 357 LT A TR R ARLYRAA AGA VRLADALA TGDC A LADDLL++PD Sbjct 309 ALTDLAGRTRGHPARAARLYRAAAEAGASAPGVRLADALALTGDCGTAGRLADDLLTAPD 368 Query 358 ATERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATL 417 ERAAAVR+AASVA+HDG A LF WLGP PDT+V++AATI A GD A AR+T Sbjct 369 PAERAAAVRIAASVALHDGGAEQAHSLFEWLGPVPDTVVAAAATIAAVAAGDAAAARSTA 428 Query 418 RLKDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVT 477 ++ GPPT AR A LA GL++T+DQPYP A+A+L QA+ T+ + +PD+PAALVT Sbjct 429 QMPAPGPPTSTARAASGLAAGLVMTLDQPYPAAVARLSQALGTDLGQAMALPDTPAALVT 488 Query 478 LAAIHAGDPVRARSVIGRAV-----RAGADPLF-QRRHLLLSGWIKMQEGQLPSASADVA 531 LAA+H GDPVRARSV+GRAV R D F RRH LL GW MQ+GQL A++ Sbjct 489 LAALHGGDPVRARSVVGRAVHTDGQRESEDATFVTRRHRLLQGWAYMQDGQL-HAASAAV 547 Query 532 AASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGEL 591 A+ HRRDALWAAALQTA++RR+GD GA+Q+HWY+AME LAEYS+D+F +LPLGEL Sbjct 548 RAAGDPGPHRRDALWAAALQTAVARRSGDSGAMQKHWYSAMEVLAEYSIDVFTVLPLGEL 607 Query 592 WVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQA 651 WVAAARMRQV++L+HTLD+ +L LG+P LW+ LHWAGVHAGILANSP+SVAPHGQA Sbjct 608 WVAAARMRQVERLRHTLDEVFAMLVGLGDPVLWAVPLHWAGVHAGILANSPDSVAPHGQA 667 Query 652 LGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQ 711 L A HS+ A+AL+ AGRTWL+VLA VDADEV++AAR L+ G T DATRLAGQAALQ Sbjct 668 LTAAAPHSSFARALAAAGRTWLKVLANQVDADEVSSAARGLAQYGHTWDATRLAGQAALQ 727 Query 712 TSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQP-PAGSPLSDREREV 770 T+D RVS AMLQLARDLK GE P D P S A PA + LSDREREV Sbjct 728 TTDPRVSQAMLQLARDLK-DAVAGEAPVDLPDGAPPSAAASAGPSGRPAAAHLSDREREV 786 Query 771 AELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAM 820 AELLL G+PYRDIGA+LFISAKTVEHHVARIR+RLGA SRSE+LSMLRA+ Sbjct 787 AELLLQGLPYRDIGAQLFISAKTVEHHVARIRRRLGAESRSELLSMLRAL 836 >gi|289748108|ref|ZP_06507486.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289688636|gb|EFD56124.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=418 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/396 (98%), Positives = 389/396 (99%), Gaps = 0/396 (0%) Query 410 LATARATLRLKDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIP 469 +ATARATLRLKDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIP Sbjct 1 MATARATLRLKDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIP 60 Query 470 DSPAALVTLAAIHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASAD 529 DSPAALVTLAAIHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASAD Sbjct 61 DSPAALVTLAAIHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASAD 120 Query 530 VAAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLG 589 VAAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLG Sbjct 121 VAAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLG 180 Query 590 ELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHG 649 ELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHG Sbjct 181 ELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHG 240 Query 650 QALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAA 709 QALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAA Sbjct 241 QALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAA 300 Query 710 LQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDRERE 769 LQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDRERE Sbjct 301 LQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDRERE 360 Query 770 VAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRL 805 VAELLLLGMPYRDIGARLFIS TV++ R QRL Sbjct 361 VAELLLLGMPYRDIGARLFISTNTVKNLNRRRHQRL 396 >gi|145220881|ref|YP_001131559.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK] gi|315442163|ref|YP_004075042.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145213367|gb|ABP42771.1| transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315260466|gb|ADT97207.1| transcriptional regulator, LuxR family [Mycobacterium sp. Spyr1] Length=833 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/830 (56%), Positives = 566/830 (69%), Gaps = 39/830 (4%) Query 26 PAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPE 85 PAAR A+ + P K L+TGGIGTGKTT+LAA R T R +G VL+ PP G P + Sbjct 3 PAAREAIAAVDADPRAATKSLVTGGIGTGKTTLLAAMRTTFRSAGRQVLSRPPDAGTPGD 62 Query 86 ---TALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRI 142 ALV+DDA LL D +L RLT+ D TVV A +A H L+ L L R+ P + Sbjct 63 GAGYALVVDDAHLLGDDDLDRLTDLAGDPASTVVIATQALMHRSRLQVLMTVLARENPEV 122 Query 143 SLGPLPVAE-------------------HLRDCTAGLPFLIHA----VSARAQAPAQAAK 179 +L PL A+ L T G PFL+ A + AQ+ QAA Sbjct 123 ALRPLTAAQVQEAATSALGASVGPELTRLLVSVTGGFPFLVSAALSAIPDGAQSARQAAH 182 Query 180 VALIERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSH 239 ALIERL RLD LDTLL+M+L+ LG DVAAAL I +A VD A A+ LI+ +H Sbjct 183 FALIERLARLDGHLLDTLLVMTLSPGLGPDDVAAALRIPADEAVAAVDSARATALIDPAH 242 Query 240 TAAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADIL 299 T+ FL +VHD IAQIVG A HH+VE ++L SQL + ++A+LALR+A+HG+RD+RLA L Sbjct 243 TSQFLAAVHDGIAQIVGAARHHDVEMAVLDSQLALCTLTADLALRIADHGVRDDRLATAL 302 Query 300 TRYAADTRDASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDAT 359 T +AA D R ARLYRAA AG + LADAL TGDC A LADDLL+S D Sbjct 303 TDFAARVPDRPARAARLYRAATDAGTTAVRPALADALVLTGDCVTAGRLADDLLTSQDPD 362 Query 360 ERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRL 419 ERAAAVR+AAS+A+HDG AA+LF WLGP PD +V +A TI A GD A R+T + Sbjct 363 ERAAAVRIAASIALHDGAARQAADLFAWLGPAPDAVVGAAETIAALAVGDAAAVRSTAQG 422 Query 420 KDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLA 479 +GPPT AR AR + EGL++T+DQPYP A+A+L QAIA + ++ V+PD+PAALVTLA Sbjct 423 PPSGPPTAVARSARAITEGLVMTLDQPYPAAIARLSQAIAVD-AVHGVLPDTPAALVTLA 481 Query 480 AIHAGDPVRARSVIGRAVRAGADP------LFQRRHLLLSGWIKMQEGQLPSASADVAAA 533 A+H GDPVRARSVIGRAV A + P RH LL GW MQ+GQL +A+A + A Sbjct 482 ALHGGDPVRARSVIGRAVLADSRPDRADATFVTSRHRLLQGWAYMQDGQLAAAAAAI-PA 540 Query 534 SAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWV 593 LHRRDALWAAAL T I+RR+GD GA+Q HW +AM+ LAE S DLF +LPLGELW+ Sbjct 541 DGDPRLHRRDALWAAALHTGIARRSGDTGAMQMHWRSAMDVLAESSADLFTVLPLGELWI 600 Query 594 AAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALG 653 AA+R+RQVDQ++H+LD+ LL +LG+P LWS LHWAGVHAGILANSP++VAPHG AL Sbjct 601 AASRLRQVDQVRHSLDEVFGLLAALGDPLLWSIPLHWAGVHAGILANSPDAVAPHGAALT 660 Query 654 AMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTS 713 A H+ A+AL+ AGRTWLRVLA+ VD EVTAAAR L+ G T DATRLAGQAALQT+ Sbjct 661 AAAPHAQFAKALAAAGRTWLRVLADRVDVAEVTAAARGLALHGHTWDATRLAGQAALQTT 720 Query 714 DARVSGAMLQLARDLK--LGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVA 771 D+R + AMLQLARDLK + PS A DT PPA Q + + LS+REREVA Sbjct 721 DSRAAQAMLQLARDLKATVAASDASVPSSATDT---VAPPPAVPQRVSSTQLSEREREVA 777 Query 772 ELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAML 821 ELLL G+PYR+IG++LFISAKTVEHHVARIR+RLGA SRSEMLSMLRA L Sbjct 778 ELLLQGLPYREIGSQLFISAKTVEHHVARIRRRLGAESRSEMLSMLRAAL 827 >gi|296167769|ref|ZP_06849964.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897069|gb|EFG76685.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=474 Score = 575 bits (1482), Expect = 1e-161, Method: Compositional matrix adjust. Identities = 352/477 (74%), Positives = 387/477 (82%), Gaps = 6/477 (1%) Query 348 LADDLLSSPDATERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAAN 407 LADDLL+S D ERAAAVRVAASVA HDG+ G AAELFGWLG +PD +V +A I AA Sbjct 1 LADDLLASADPAERAAAVRVAASVAAHDGHAGQAAELFGWLGAYPDAVVGAAGAITLAAA 60 Query 408 GDLATARATLRLKDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQV 467 GDLA A A LRL GPPT AR AR LAEGLLL+M +PYPVA+AKLGQAIA S+ +V Sbjct 61 GDLAAAHAALRLPGEGPPTAGARAARGLAEGLLLSMKEPYPVAVAKLGQAIAVGGSIGEV 120 Query 468 IPDSPAALVTLAAIHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSAS 527 +PDS AALVTLAA+H GDPVRARS+IGRAVR G D LF+RRHLLL GW KM++GQL SA Sbjct 121 MPDSAAALVTLAALHGGDPVRARSIIGRAVRTGGDALFERRHLLLLGWTKMRDGQLASAG 180 Query 528 ADVAAASAG--THLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFAL 585 AD AA +G T LHRRDALWAAAL+TAI+RR+GD GAL +HWYAAME LAEYS+DLF L Sbjct 181 ADADAACSGAATDLHRRDALWAAALRTAIARRSGDTGALHKHWYAAMEVLAEYSIDLFTL 240 Query 586 LPLGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESV 645 LPLGELWVAAARMRQV +L+HTLDQA LL+SLGNP LWS LHWAGVHAGIL +SPESV Sbjct 241 LPLGELWVAAARMRQVARLRHTLDQAFGLLESLGNPVLWSVPLHWAGVHAGILTSSPESV 300 Query 646 APHGQALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLA 705 APHGQAL A HS A AL+ AGRTWLRVLA VDADEVT AARSL+ GLT DATRLA Sbjct 301 APHGQALTAAAPHSVFAHALAGAGRTWLRVLAGQVDADEVTMAARSLAQFGLTWDATRLA 360 Query 706 GQAALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSD 765 GQAALQT DARVSG MLQLARDLKL E P D EP + P PRQPP+ +PLS Sbjct 361 GQAALQTPDARVSGDMLQLARDLKLVAAVEETP----DDEPGADAPKTPRQPPSAAPLSA 416 Query 766 REREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLA 822 REREVAELLLLG+PYRDIG +LFISAKTVEHHVARIR+RLGAGSRSEMLSMLRA+LA Sbjct 417 REREVAELLLLGLPYRDIGRQLFISAKTVEHHVARIRRRLGAGSRSEMLSMLRAILA 473 >gi|169631370|ref|YP_001705019.1| LuxR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243337|emb|CAM64365.1| Putative transcriptional regulator, LuxR family [Mycobacterium abscessus] Length=813 Score = 570 bits (1469), Expect = 4e-160, Method: Compositional matrix adjust. Identities = 376/804 (47%), Positives = 491/804 (62%), Gaps = 38/804 (4%) Query 43 VKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETA-LVIDDAQLLTDTEL 101 VKVL+ G G+GKT VL+ R+ L +G + P P T VIDDA LTD +L Sbjct 25 VKVLVNGTAGSGKTFVLSRIREALGSAGTPAVNHVPEAAPGPNTGPFVIDDADSLTDRQL 84 Query 102 LRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRISLGPL-------------P 148 L V + ++ A A + ALR+L ALER+ P I+LGP+ P Sbjct 85 ETLRAVVENDPAAIIVVAAAPRRNPALRSLFQALERESPAITLGPVNATDIGRMSPLAAP 144 Query 149 VAEHLRDCTAGLPFLIHAVSARA------QAPAQAAKVALIERLRRLDEPTLDTLLMMSL 202 AE + + G+ L A R Q+ +A + E LRRL +L+MSL Sbjct 145 FAEQIAAASGGVLALTAAAVERLGDPDPLQSALRAIDTRVDELLRRLSPMAQAAVLLMSL 204 Query 203 THELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVGNAHHHE 262 +G SDVAAAL + VD A ASGLI AF VH A+++G A H + Sbjct 205 NPGIGASDVAAALALPDAADL--VDEALASGLIAGPGHVAFAARVHGCAARLLGAARHLD 262 Query 263 VETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARLYRAAVH 322 +E SLLR+QL++ VSA+LAL L HGLRD +A +L+ +A D + A LYRAA+ Sbjct 263 LERSLLRTQLEMGSVSADLALALVGHGLRDLEVARLLSNWATTESD-PLSAADLYRAALT 321 Query 323 AGAKGLTVR--LADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDGNTGH 380 AGA+ +R LA++LAR GD AAA AD++L+S D +R A VRVAA++A H+G++G Sbjct 322 AGAEPDPIRVPLAESLARAGDLAAAAAQADEVLASTDPAQRTAGVRVAAAIACHNGDSGQ 381 Query 381 AAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLAEGLL 440 AA L+ WLG D + + +A+ VF G LA R +L PPT +A RN A G++ Sbjct 382 AAALYSWLGADMDGLTALSASPVFVGTGQLAKGRKSLEDNVGAPPTTSATAQRNAALGVI 441 Query 441 LTMDQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRAVRAG 500 +++ A++ LGQA+ + S S IPDS AL L +H+GD RARS++ A+RA Sbjct 442 ASVEGRGQEALSLLGQAVTQQPSTSSFIPDSTVALAALTMLHSGDTARARSILTGAIRAD 501 Query 501 A-DPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISRRTG 559 +F RH LL+ WI M G L A + A L RRD L+A +L+T I+RR G Sbjct 502 RRHDVFGVRHRLLAAWIAMLSGDLSGAVQWLPGAQ--VELSRRDRLFAESLRTGIARRHG 559 Query 560 DIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLDSLG 619 D G L+QHW A+M+AL+ YS+DL+ LLP+GELWVAAAR+R +D + H LD+A +L LG Sbjct 560 DTGPLRQHWQASMDALSAYSIDLYTLLPVGELWVAAARLRTLDVMTHHLDRAFAVLAHLG 619 Query 620 NPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVLAEN 679 +P WS L WAGVHA IL NSPE++APHGQAL A ST A+ L+ AGRTWLRVLA + Sbjct 620 DPIAWSAPLRWAGVHAAILTNSPETLAPHGQALAAGAGSSTYARILATAGRTWLRVLANH 679 Query 680 VDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGEPPS 739 VD +EV +AAR L+ GL DATRLA QAAL +D +V+ +ML LARDL+ PS Sbjct 680 VDGEEVDSAARMLADTGLGWDATRLASQAALHANDPKVAASMLALARDLR-------SPS 732 Query 740 GAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVA 799 A D E TP + P + LS+REREVAELLL G+PYRDIGA+LFISAKTVEHHVA Sbjct 733 AAADGE---STPSSAVHSPTSTRLSEREREVAELLLRGLPYRDIGAQLFISAKTVEHHVA 789 Query 800 RIRQRLGAGSRSEMLSMLRAMLAP 823 RIR+RLGA SRS+M SMLRA+L P Sbjct 790 RIRRRLGAESRSDMFSMLRAILTP 813 >gi|312141360|ref|YP_004008696.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311890699|emb|CBH50018.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length=833 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 308/811 (38%), Positives = 430/811 (54%), Gaps = 60/811 (7%) Query 46 LITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRLT 105 L+ G G+GK+ VL R+ L G V+ E + LVID A L +L L Sbjct 37 LVRGRSGSGKSLVLTVIREHLIAHGHDVVTTVAA-AETGDAVLVIDGAHTLPADDLAALH 95 Query 106 ERVADSRLTVVAAAEAREHHRALRALTMALER----------------DRPRI-SLGPLP 148 V + VV A E R H AL AL ++ DR R + P P Sbjct 96 RLVQRNDRGVVVAVEPRPHDPALCALGTTMQTLGSVFDLGALTPADIADRARARGIEPTP 155 Query 149 -VAEHLRDCTAGLPFLIH-----AVSARAQAPAQAAKVA-LIERLRRLDEPTLDTLLMMS 201 +A L + T G L H A + +A +AA +A L + L+ LD + L + Sbjct 156 SLARSLHEWTGG--ALTHVDAGLAAARHGEAGVRAAVIAHLQDVLQHLDGDVVAALALHL 213 Query 202 LTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVGNAHHH 261 D+A AL IS A+ L DR AS ++ + + + L + VG Sbjct 214 YGGGTDAGDLAPALDISPGQAQALADRVRASSVV--TRSGSVLPLARPLLTSAVGVTRLR 271 Query 262 EVETSLLRSQLDISPVSAELALRLAEHGLRDERLADIL-TR-YAADTRDASVRCARLYRA 319 ++++ LL ++LD + A LAE GL D RLA+ L TR ++AD +A +Y Sbjct 272 DLQSRLLATRLDAGTLDTRTACTLAESGLDDPRLAEFLCTRAHSADPSEAYT----IYDC 327 Query 320 AVHAGAKGLTVRL--ADALARTGDCTAAATLADDLLSSPD---ATERAAAVRVAASVAVH 374 A+ AGA + L +A A +G+ A LAD LL+ D E AAVR+++S+A Sbjct 328 AILAGADADALALHRCEAGALSGNLDTAHALADALLTRADDLDPAEVCAAVRISSSIAAQ 387 Query 375 DGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARN 434 G GH+A+L+ WLGP + + A V A G A A L GPPT AA Sbjct 388 RGELGHSADLYEWLGPDRAGVDAPIAATVLLAAGRPGPAEAMLARGRQGPPTSAAAGTAL 447 Query 435 LAEGLLLTMDQPYPVAMAKLGQAIA--TEQSLSQVIPDSPAALVTLAAIHAGDPVRARSV 492 LA+GL ++ VAM L +A+A + + S+++PD+ A+ L +H+G+ A +V Sbjct 448 LADGLAQSIAGSGAVAMNSLTRAMAMLSSSARSRILPDTAPAVTALLCLHSGELAHAEAV 507 Query 493 IGRAVRAGADP---LFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAA 549 + +A+ DP + + RHL+LS W M G L A + L R+A + Sbjct 508 LRQALEL--DPAAGITRSRHLVLSAWTAMIGGDLAGAGTILDGLPTDRALPAREAFFLHG 565 Query 550 LQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLD 609 L+ ++RR GD+GALQ+ W A +A YS DLF LLPLGELW+AA R+ ++ H ++ Sbjct 566 LRIGLARRQGDVGALQREWTQAQPVVAGYSADLFGLLPLGELWLAAVRLGDEQRILHLVE 625 Query 610 QALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAG 669 QA LL LG PALW +LHW GV A IL +P ++ PH +AL A S+ A L+ AG Sbjct 626 QAQDLLVRLGEPALWGATLHWYGVQAAILGENPAALLPHARALAASAEVSSYAAGLAAAG 685 Query 670 RTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLK 729 R WLRVL E +A EV AAAR+L +GL D RLAG+AAL+ SD R + A+LQ+AR L+ Sbjct 686 RVWLRVLREEAEAAEVEAAARTLDRIGLPWDGARLAGEAALRVSDTRGATALLQVARSLR 745 Query 730 LGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFI 789 G + T+PA GT L+DRE +VAELL+LG+ +R+IGARL+I Sbjct 746 -GAAAAQSGGEITATDPAVGT------------LTDREADVAELLVLGLTHREIGARLYI 792 Query 790 SAKTVEHHVARIRQRLGAGSRSEMLSMLRAM 820 + KTVEHHVARIR+RLGA SRSE+LSMLRA+ Sbjct 793 APKTVEHHVARIRRRLGANSRSELLSMLRAL 823 >gi|325673798|ref|ZP_08153488.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555063|gb|EGD24735.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length=833 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 308/812 (38%), Positives = 430/812 (53%), Gaps = 60/812 (7%) Query 45 VLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTELLRL 104 VL+ G G+GK+ VL R+ L G V+ E + LVID A L +L L Sbjct 36 VLVRGRSGSGKSLVLNVIREHLIAHGHDVVTTVAA-AETVDAVLVIDGAHTLPADDLAAL 94 Query 105 TERVADSRLTVVAAAEAREHHRALRALTMALER----------------DRPRI-SLGPL 147 V + VV A E R H AL AL ++ DR R + P Sbjct 95 HRLVQRNDRGVVVAVEPRPHDPALCALGTTMQTLGSVFDLGALTPADIADRARARGIEPT 154 Query 148 P-VAEHLRDCTAGLPFLIH-----AVSARAQAPAQAAKVA-LIERLRRLDEPTLDTLLMM 200 P +A L + T G L H A + +A +AA +A L + L+ LD + L + Sbjct 155 PSLARSLHEWTGG--ALTHVDAGLAAARHGEAGVRAAVIAHLQDVLQHLDGDVVAALALH 212 Query 201 SLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVGNAHH 260 D+A AL IS A+ L DR AS ++ + + + L + VG Sbjct 213 LYGGGTDAGDLAPALAISPAQAQALADRVRASSVV--TRSGSVLPLARPLLTSAVGVTRL 270 Query 261 HEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADIL-TR-YAADTRDASVRCARLYR 318 ++++ LL ++LD + A LAE GL D RLA+ L TR ++AD +A +Y Sbjct 271 RDLQSRLLATRLDAGTLDTRTACTLAESGLDDPRLAEFLCTRAHSADPSEAYT----IYD 326 Query 319 AAVHAGAKGLTVRL--ADALARTGDCTAAATLADDLLSSPD---ATERAAAVRVAASVAV 373 A+ AGA + L +A A +G+ A LAD LL+ D E AAVR+++S+A Sbjct 327 CAILAGADADALALHRCEAGALSGNLDTAHALADALLTRADDLDPAEVCAAVRISSSIAA 386 Query 374 HDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARCAR 433 G GH+A+L+ WLGP + + A V A G A A L GPPT AA Sbjct 387 QRGELGHSADLYEWLGPDRAGVDAPIAATVLLAAGRPEPAEAMLARGRQGPPTSAAAGTA 446 Query 434 NLAEGLLLTMDQPYPVAMAKLGQAIA--TEQSLSQVIPDSPAALVTLAAIHAGDPVRARS 491 LA+GL ++ VAM L +A+A + + S+++PD+ A+ + +H+G+ A + Sbjct 447 LLADGLAQSIAGSGAVAMNSLTRAMAMLSSSARSRILPDTAPAVTAMLCLHSGELAHAEA 506 Query 492 VIGRAVRAGADP---LFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAA 548 V+ +A+ DP + + RHL+LS W M G L A + L R+A + Sbjct 507 VLRQALEL--DPTAGITRSRHLVLSAWTAMIGGDLAGAGTILDGLPTDRALPAREAFFLH 564 Query 549 ALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTL 608 L+ ++RR GD+GALQ+ W A +A YS DLF LLPLGELW+AA R+ ++ H + Sbjct 565 GLRIGLARRQGDVGALQREWTQAQPVVAGYSADLFGLLPLGELWLAAVRLGDEQRILHLV 624 Query 609 DQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDA 668 +QA LL LG PALW +LHW GV A IL +P ++ PH +AL A S A L+ A Sbjct 625 EQAQDLLVRLGEPALWGATLHWYGVQAAILGENPAALLPHARALAASAEVSAYAAGLAAA 684 Query 669 GRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDL 728 GR WLRVL E +A EV AAAR+L +GL D RLAG+AAL+ SD R + A+LQ+AR L Sbjct 685 GRVWLRVLREEAEAAEVEAAARTLDRIGLPWDGARLAGEAALRVSDTRGATALLQVARSL 744 Query 729 KLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLF 788 + G + T+PA GT L+DRE +VAELL+LG+ +R+IGARL+ Sbjct 745 R-GAAAAQSGGEITATDPAVGT------------LTDREADVAELLVLGLTHREIGARLY 791 Query 789 ISAKTVEHHVARIRQRLGAGSRSEMLSMLRAM 820 I+ KTVEHHVARIR+RLGA SRSE+LSMLRA+ Sbjct 792 IAPKTVEHHVARIRRRLGANSRSELLSMLRAL 823 >gi|326906093|gb|EGE53026.1| hypothetical protein TBPG_04072 [Mycobacterium tuberculosis W-148] Length=178 Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 178/178 (100%), Positives = 178/178 (100%), Gaps = 0/178 (0%) Query 655 MVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSD 714 MVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSD Sbjct 1 MVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSD 60 Query 715 ARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELL 774 ARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELL Sbjct 61 ARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELL 120 Query 775 LLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 832 LLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR Sbjct 121 LLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPESLTADERR 178 >gi|296164181|ref|ZP_06846782.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900463|gb|EFG79868.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=300 Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 195/291 (68%), Positives = 227/291 (79%), Gaps = 0/291 (0%) Query 22 TEVPPAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDG 81 TEVP ARR + LA+ PV+VL++GGIGTGKTTVLAA RD LR +G+TVL PP DG Sbjct 10 TEVPADARRIISALADGAQTPVRVLVSGGIGTGKTTVLAAVRDALRGAGVTVLTRPPRDG 69 Query 82 EPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPR 141 + P+ A+VIDDAQLL D ELL L ER+AD T+V AAE E H ALR L AL+R+RPR Sbjct 70 DRPDAAVVIDDAQLLADAELLALVERIADPTATIVVAAEPCEQHTALRTLATALDRERPR 129 Query 142 ISLGPLPVAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDTLLMMS 201 +SLGPLPVA+H D TAGLPFL+ AVS A+ P QAAK ALI+RLRRLDEP LDTLL+ S Sbjct 130 LSLGPLPVADHFLDSTAGLPFLVRAVSEAARDPLQAAKFALIDRLRRLDEPALDTLLITS 189 Query 202 LTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVGNAHHH 261 L+ LG +DVAAAL IS T+AR LVDRA ASGLIE SH+ FLQSVHDA+AQ+VGNAHHH Sbjct 190 LSPGLGTADVAAALDISTTEARLLVDRARASGLIEPSHSPVFLQSVHDAVAQLVGNAHHH 249 Query 262 EVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASVR 312 +VET+LLRSQL +S +SA+LALRLAEHGLRD LA IL R AA+ R S R Sbjct 250 QVETALLRSQLAMSALSADLALRLAEHGLRDADLASILRREAAEARGESGR 300 >gi|54027388|ref|YP_121630.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54018896|dbj|BAD60266.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=834 Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 319/842 (38%), Positives = 418/842 (50%), Gaps = 71/842 (8%) Query 26 PAARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPD----G 81 P AR L EL P+ LI G GTGK+T+L TL RS L P D Sbjct 10 PCARDLLRELDTVDQEPIIYLIRGRSGTGKSTML-----TLIRSRLKARGIPFRDHATAT 64 Query 82 EPPETALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPR 141 + AL++D+A L+ TEL + V TVV A + R H + LRALT A+ R Sbjct 65 DDASAALIVDNATTLSATELDAVCAAVDSGARTVVVATQPRPHDQRLRALTDAVARRGRV 124 Query 142 ISLGPL------------------PVAEHLRDCTAGL-----PFLIHAVSARAQAPAQAA 178 + L PL PVA+H+ T G+ L A SAR A +A Sbjct 125 LDLRPLGTADILPFARELGMMVPRPVAQHIHQQTGGIRGGVVAALTAACSARLDAGIRAV 184 Query 179 KVALI----ERLRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGL 234 A+ +L LD L+TL + + L S++ LG+ A L+DRA AS L Sbjct 185 DEAVAGWARAQLEDLDPDLLETLAVATTGTGLDASELTDVLGVEPDAAHSLIDRARASAL 244 Query 235 IESSHTAAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDER 294 I + L+ + ++G+ V+ LL ++L+ + AL LAE G+RD R Sbjct 245 ITDADL--LLEPAVAPLRTMLGDRRFVAVQRRLLNARLEAGLLRDHTALMLAESGVRDTR 302 Query 295 LADILTRYAADTRDASVRCARLYRAAVHAGAKGLTV--RLADALARTGDCTAAATLADDL 352 LA+ L A +VR Y AA AGA+ T+ R A+A AR GD A LA+ + Sbjct 303 LAEFLAAAAEHNGTDAVR---YYAAAAAAGAQVDTIGLRWAEAAARAGDGDTAMRLAEPV 359 Query 353 LSSPDAT--ERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDL 410 L+ P E A AVR+ A V G G AA+L+ WLG H S V A GDL Sbjct 360 LARPGVGVGELATAVRICAGVLTRRGLVGRAAQLYRWLGAHRVGADWSVGATVLALAGDL 419 Query 411 ATARATLRLKDAGPPTMAARCARNLA---EGLLLTMDQPYPVAMAKLGQAIATEQSLSQV 467 AR + PPT A R +A E L + A+A L Q + ++ + Sbjct 420 DGARELSATAEQWPPTEAGEHTRAIACALEDSLRGTESGTAAAVAALIQTAHGDATIDRF 479 Query 468 IPDSPAALVTLAAIHAGDPVRARSVIGRAVRAGADPLFQRRHL-LLSGWIKMQEGQLPSA 526 +P + TL + G P RA I RA AG + HL +L+ W M G A Sbjct 480 LPCTAVGPATLLCLSTGQPRRAGDAIRRANAAG----LRSPHLSVLTAWTAMLGGD-EQA 534 Query 527 SADVAAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALL 586 +A AA L RRD L A ++RR GD AL + W AA E DL L Sbjct 535 AATTLAALDLATLDRRDRLLAHGAAVGLARRGGDHAALTKAWQAAYPIFDEVDADLLTAL 594 Query 587 PLGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVA 646 P+GELW+A R+R ++Q +D L LL LG P W+N+ HW GV A I SP+ + Sbjct 595 PIGELWLAGIRLRDERRVQPLVDATLALLRRLGQPPAWANAFHWYGVQAAIAHESPDELL 654 Query 647 PHGQALG-AMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLA 705 P + L A A A L+DAGRTW+ VL V A VT A L +GL DA RLA Sbjct 655 PPARLLKDAAEAGDRHAAVLADAGRTWVLVLRGEVAAQPVTTAVAGLRELGLVWDAARLA 714 Query 706 GQAALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAG-------DTEPASGTPPAPRQPP 758 +AAL +D+ + A+L+LAR ++ EP + A DT PA+ +P Sbjct 715 SEAALAAADSATATALLKLARTVRAEARPPEPGTPAPAPRAQAPDTAPAA-------EPT 767 Query 759 AGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLR 818 A LSDREREVAEL+LLG+ YR+IGARL+ISAKTVEHHVARIR+R+GAGSRSE+LSMLR Sbjct 768 A--VLSDREREVAELVLLGLTYREIGARLYISAKTVEHHVARIRRRVGAGSRSELLSMLR 825 Query 819 AM 820 AM Sbjct 826 AM 827 >gi|229492067|ref|ZP_04385879.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229321020|gb|EEN86829.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length=826 Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 281/821 (35%), Positives = 411/821 (51%), Gaps = 73/821 (8%) Query 42 PVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTEL 101 P+++ +TG + + V R + V+ D P + +VI DAQ LT E+ Sbjct 25 PLRLFVTGTDASARPQVTRVVRKRIESRDRPVVTAVTHD-VPADAIVVIADAQALTSDEI 83 Query 102 LRLTERVADSRLTVVAAAE-------------------------AREHHRALRALTMALE 136 L E V L VV A++ R R + A Sbjct 84 RALKELVQRDDLGVVVASDRIDPPLAPIYSNISSFGTVLHLNPLNRNDIRKIAAERRVTL 143 Query 137 RDRPRISLGPLPVAEHLRDCTAGL--PFLIHAVSARAQAPAQAAKVALIERLRRLDEPTL 194 DR ++L EHL + G + A + R + P A + ++ ++ L P Sbjct 144 DDRAVVAL------EHLSGGSFGAIEAYFAAASAGRPEMP-NAIRTHILHQVTAL-HPIE 195 Query 195 DTLLMMSLTHELGVSDVAAA---LGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAI 251 +L +SL V D+ A LG DRA A+GL S + + SV + Sbjct 196 REILEVSL----AVPDIDAFELDLGQEKFSLTAAFDRALATGLFGSR--SPLVASV---L 246 Query 252 AQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASV 311 A+ ++ S+ + + A RL + G+R L +L R A + +V Sbjct 247 AESTSTGRIRSELIRIVESRAHTRTLDIDTARRLFDSGIRHRDLTGVL-RDAVEASTPAV 305 Query 312 RCARLYRAAVHAGAKGL--TVRLADALARTGDCTAAATLADDLLSSPDATER--AAAVRV 367 A L+R G+ T+ A AR+GD A LAD ++++PD + AAAVR+ Sbjct 306 -AADLFRRVNSIEPLGVADTLLYAQVSARSGDLDTACRLADSVIAAPDLDDARLAAAVRI 364 Query 368 AASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTM 427 A+ + G G AA+L+ WLGP S A I F G + A A L G P+ Sbjct 365 RAASSAACGQLGAAADLYTWLGPGRTGNESPFAAITFLGIGKVDDANAAL-TGHTGSPSS 423 Query 428 AARCARNLAEGLLLTMDQPYPVAMAKLGQAIATE--QSLSQVIPDSPAALVTLAAIHAGD 485 + A LA GL+ ++ P A+ + +A++ S+ PDS ALV LA +H G Sbjct 424 STVGATTLANGLMQSVTGSAPSALNTMSRALSLPGGADTSEFQPDSAPALVALALLHNGA 483 Query 486 PVRARSVIGRAVRA--GADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRD 543 RA +V+ A+ A + + R HLL WI M GQ + D+ L RD Sbjct 484 HERAAAVVTSAIAADDASSHTWARLHLL-GAWIAMVRGQ-DAILEDLPQEVVRGPLRERD 541 Query 544 ALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQ 603 AL+ AL ++RR+GD+ L++ W A L+ S+DLF LLP+GELW+AA R+ + +Q Sbjct 542 ALFLHALIVGLARRSGDLAQLRRAWSGAAGTLSSCSVDLFDLLPIGELWLAAVRLEETEQ 601 Query 604 LQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQ 663 ++H +D A +LL +LG P LWS+ LHW GV A IL+ SP + PH L T A Sbjct 602 VEHLVDDARSLLRALGEPPLWSSPLHWYGVQASILSQSPADLLPHAHTLAESAKTHTYAA 661 Query 664 ALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQ 723 L+ AGR WL ++ NVDAD+V AAAR+L +GL DA RLAG+AAL+T D + + A+L Sbjct 662 GLAVAGRQWLLLMQGNVDADDVEAAARTLGRIGLPWDAARLAGEAALRTPDTKSATALLH 721 Query 724 LARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDI 783 +AR L+ + + A DT S PP S L++RE+EVAEL+++G+ YR+I Sbjct 722 VARSLRTTS---TAETNATDTT-TSAAPP--------SVLTEREQEVAELVVVGLTYREI 769 Query 784 GARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPE 824 G RL+ISAKTVEHHVARI++R+GA SRSE+L++LR+M P Sbjct 770 GERLYISAKTVEHHVARIKRRVGAQSRSELLTILRSMTPPN 810 >gi|111022450|ref|YP_705422.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110821980|gb|ABG97264.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length=647 Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 255/644 (40%), Positives = 347/644 (54%), Gaps = 26/644 (4%) Query 186 LRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQ 245 L LD P L L ++ L +L + VA L I AR VD A G ++ T Sbjct 13 LAELDGPQLSALALVLLGSDLDETVVARVLDIEPDRARAAVDALRADGWVDERDTLVLAD 72 Query 246 SVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAAD 305 H + + +G + LL +D ++ +A +A G + L+ L A Sbjct 73 HTH--LTETLGENRLTTLARRLLTHHVDGGTLTLPVARAVAATGTPSDDLSQFLCAQAEL 130 Query 306 TRDASVRCARLYRAAVHAGAKG--LTVRLADALARTGDCTAAATLADDLLSSPDAT---E 360 A+ LY A G G V A+A A GD A LAD +L E Sbjct 131 AEPAT--AVALYAEAGRVGRLGDSAVVAYAEACALNGDLDTAVGLADSVLERSGTVGDAE 188 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 AAAVR++A+ A G +AEL+ WLG +S A V G L A A L Sbjct 189 LAAAVRISAAGAAFCGMIDRSAELYAWLGADRAGADASLAASVLVVAGRLDDAEAVLATS 248 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIAT--EQSLSQVIPDSPAALVTL 478 PPT A A +A GL+ + A+ L +A++ S +V+PDSPAA+ L Sbjct 249 AGAPPTAATAGAALVATGLVQSATASANAALNSLTRALSLPGRASRPRVLPDSPAAITAL 308 Query 479 AAIHAGDPVRARSVIGRAVRAGADP--LFQRRHLLLSGWIKMQEGQLPSASADVAAASAG 536 AA+H G+ A +V+ RA R P + RH LL+ W M G L +A + + A Sbjct 309 AALHCGELAHADAVLARA-RETERPGSVTANRHQLLTAWTSMVRGDLAAAQSRLDGLDAA 367 Query 537 THLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAA 596 + + +RD L+ L+ ++RRTGD AL Q W A LAEYS+DL +LLPLGELW+ + Sbjct 368 S-MRQRDLLFVHGLRVGLARRTGDNAALLQAWAGAQGVLAEYSVDLLSLLPLGELWLTSI 426 Query 597 RMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMV 656 R+ + ++ H ++ A +LL +LG PA+W ++LHW GV A ILA P + PH +ALG Sbjct 427 RVGEPARITHLVEDAQSLLRTLGEPAMWGSALHWYGVQASILAECPADLMPHARALGEAA 486 Query 657 AHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDAR 716 ST A L+ AGR WLRVL ++DA V AAR+L +GL D RLAG+AAL+ SD R Sbjct 487 KVSTYASGLATAGRAWLRVLQGDIDAASVEDAARTLDRIGLPWDGARLAGEAALRASDTR 546 Query 717 VSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLL 776 V+ A+LQ+AR L+ P+ AG+ S +P P L+DRE EVAELL+ Sbjct 547 VATALLQVARALR-------QPTSAGNGAD-SAVVSSPSTP---GSLTDREAEVAELLVQ 595 Query 777 GMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAM 820 G+ YR+IG+RL+ISAKT+EHHVARIR+RLGAGSRSE+LSMLRAM Sbjct 596 GLTYREIGSRLYISAKTIEHHVARIRRRLGAGSRSELLSMLRAM 639 >gi|226364960|ref|YP_002782742.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226243449|dbj|BAH53797.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length=652 Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 258/651 (40%), Positives = 351/651 (54%), Gaps = 40/651 (6%) Query 186 LRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQ 245 L LD P L L ++ L +L + VA L + AR VD + G ++ T Sbjct 13 LAELDGPQLSALALVLLGSDLDETVVARVLDVEPDRARAAVDSLRSDGWVDERDTLLLTD 72 Query 246 SVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAAD 305 + +G H + LL +D ++ +A +A G E L+ L A Sbjct 73 HT--HLTTTLGENRLHTLARRLLAHHVDGGTLTLPVARAVASTGTPSEELSQFLCAQAEL 130 Query 306 TRDASV--------RCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLL---S 354 A R RL+ AAV V A+A A GD A LAD +L + Sbjct 131 AEPALAAALYAEAGRVGRLHDAAV--------VAYAEASALGGDLDTAVGLADSVLERSA 182 Query 355 SPDATERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATAR 414 + D E AAAVR++A+ A G +AEL+ WLG +S A V G L A Sbjct 183 TVDCPELAAAVRISAAGAAFCGMIDRSAELYAWLGADRAGADASLAASVLVVAGRLDDAE 242 Query 415 ATLRLKDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIAT--EQSLSQVIPDSP 472 A L PPT A A +A GL+ ++ A+ L +A++ S +++PDSP Sbjct 243 AVLATSAGAPPTAATAGAALVATGLVQSVTASANAALNSLTRALSMPGRASRPRMLPDSP 302 Query 473 AALVTLAAIHAGDPVRARSVIGRAVRAGADP--LFQRRHLLLSGWIKMQEGQLPSASADV 530 AA+ LAA+H G+ A +V+ RA R P + RH LL+ W M G L SA + + Sbjct 303 AAITALAALHCGELAHADAVLTRA-RETERPGSVTANRHQLLTAWTSMVRGDLTSAQSRL 361 Query 531 AAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGE 590 A + +H+RD L+ L+ ++RRTGD AL Q W A LAEYS+DL +LLPLGE Sbjct 362 DGLDAAS-MHQRDLLFVHGLRVGLARRTGDNAALLQAWAGAQGVLAEYSVDLLSLLPLGE 420 Query 591 LWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQ 650 LW+ A R+ + ++ H +D A +LL +LG PA+W ++LHW GV A ILA P + PH + Sbjct 421 LWLTAIRVGEPGRITHLVDDAQSLLRTLGEPAIWGSALHWYGVQASILAECPADLMPHAR 480 Query 651 ALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAAL 710 ALG S A L+ AGR WLRVL ++DA V AAR+L +GL D RLAG+AAL Sbjct 481 ALGEAAKVSPYASGLATAGRAWLRVLQGDIDAASVEDAARTLDRIGLPWDGARLAGEAAL 540 Query 711 QTSDARVSGAMLQLARDLKLGNDFGEPPS-GAGDTEPASGTPPAPRQPPAGSPLSDRERE 769 + SD RV+ +LQ+AR L+ +P S G G +P P GS L+DRE E Sbjct 541 RASDTRVATTLLQVARALR------QPTSPGNGADSAVVSSPSTP-----GS-LTDREAE 588 Query 770 VAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAM 820 VA+LL+ G+ YR+IG+RL+ISAKT+EHHVARIR+RLGAGSRSE+LSMLRAM Sbjct 589 VADLLVQGLTYREIGSRLYISAKTIEHHVARIRRRLGAGSRSELLSMLRAM 639 >gi|311742251|ref|ZP_07716061.1| LuxR family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314744|gb|EFQ84651.1| LuxR family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length=645 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 224/557 (41%), Positives = 293/557 (53%), Gaps = 17/557 (3%) Query 276 PVSAELALRLAEHGLRDERLADILTRYAADTRDASVRCARLYRAAVHAGAKGLTVRLADA 335 P+ + A L G RD RLA+ L A+ A + A L + A+ Sbjct 103 PLPVQTAGALVTSGCRDPRLAEHLVSSASHADAADADLITAWAETAGADPLRLAAQAAER 162 Query 336 LARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTM 395 R+GD AA + +L+ PD AVR A H G H+A LFG+LG Sbjct 163 AVRSGDFDAALRAGERVLADPDHASVPVAVRAVAIAHAHRGMVHHSAALFGFLGEARIGN 222 Query 396 VSSAATIVFAANGDLATARATLRLKDAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLG 455 ++ A +GD AR L PPT R ++ GL L++D A+ L Sbjct 223 DAALAVWAMLGDGDAEQARRMAALARNAPPTSVGRGLALMSRGLELSLDGGGEAALPVLV 282 Query 456 QAIATEQSLSQ--VIPDSPAALVTLAAIHAGDPVRARSVIGRAVRAG-ADPLFQRRHLLL 512 Q+ A + L V+P+SPAAL L AI G+ A V+ A+ AG L Q RH LL Sbjct 283 QSAAALRPLGDELVVPESPAALAALVAISTGEVDTAARVLTAAIDAGFGGSLQQSRHHLL 342 Query 513 SGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAM 572 W +M +G LP A+ + L RD ++ L+ I+RR GD+ AL + W Sbjct 343 LAWSRMLQGDLPGATTIADRVADSGPLALRDQMFLHGLRLGIARRAGDLVALDRAWNEVR 402 Query 573 EALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAG 632 +LAE+S+DL++LLPLGEL VAAAR+R+ +LQ L A LLDSLG P LW+ HW G Sbjct 403 VSLAEFSVDLYSLLPLGELAVAAARLRESHRLQTHLLDAGELLDSLGRPPLWAAMFHWYG 462 Query 633 VHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSL 692 VHA ILA P + PH AL S +A L+ AG+TWLRVL +VDA VT A L Sbjct 463 VHAAILAEEPSQLLPHADALVHGAQDSRVAAILARAGQTWLRVLQGDVDAAAVTCATGDL 522 Query 693 SHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPP 752 +GL+ DATRLA QAA +T+D +V ++QLAR A P + Sbjct 523 ELIGLSWDATRLAAQAAGRTTDRQVMLELMQLAR--------------AAHRTPVADVRE 568 Query 753 APRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSE 812 P + L+DRE EVA L+L G+ YR+IG RLFIS KTVEHHVARIR+RLGA +R E Sbjct 569 DGETAPLRAQLTDREWEVAMLVLTGVGYREIGERLFISPKTVEHHVARIRRRLGADTRRE 628 Query 813 MLSMLRAMLAPESLTAD 829 ML+MLR + E AD Sbjct 629 MLTMLRGLAVSEQPAAD 645 >gi|226304831|ref|YP_002764789.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226183946|dbj|BAH32050.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=811 Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 280/817 (35%), Positives = 409/817 (51%), Gaps = 65/817 (7%) Query 42 PVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETALVIDDAQLLTDTEL 101 P+++ +TG + + V A R + V+ D P + +VI DAQ LT E+ Sbjct 25 PLRLFVTGTDASARPQVTRAVRKRIESGDRPVVTVVTHDA-PADAIVVIADAQALTPDEI 83 Query 102 LRLTERVADSRLTVVAAAEARE-----------------HHRALR---ALTMALERDRPR 141 L E V L VV A++ + H L +A ER P Sbjct 84 RALNELVQRDDLGVVIASDRIDPPLAPIYSNISSFGTVLHLNPLNRSDIRKIAAERRVPL 143 Query 142 ISLGPLPVAEHLRDCTAG-LPFLIHAVSARAQAPAQAAKVALIERLRRLDEPTLDTLLMM 200 L + EHL + G + A SA A A + ++ ++ L P +L + Sbjct 144 DDRAVLTL-EHLAGGSFGAVEAYFAAASAGRPEMATAVRTHILHQVTAL-HPIEREILEV 201 Query 201 SLTHELGVSDVAAA---LGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVGN 257 S V D+ A LG DRA A+GL S + + SV +A+ Sbjct 202 SF----AVPDIDAFELDLGQEKFSLTAAFDRALATGLFGSR--SPLVASV---VAESTST 252 Query 258 AHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDASV--RCAR 315 ++ S+ + + + A RL + G+R L +L D DAS A Sbjct 253 GRIRSELIRIVESRANARTLDIDTARRLFDSGIRHRDLTAVLR----DAVDASTPAAAAD 308 Query 316 LYRAAVHAGAKGL--TVRLADALARTGDCTAAATLADDLLSSPD--ATERAAAVRVAASV 371 L+R G+ T+ A AR+GD A LAD +++ PD AAAVR+ A+ Sbjct 309 LFRRVNSIEPLGVADTLLYAQVSARSGDLDTACRLADSVIAEPDLDNARLAAAVRIRAAS 368 Query 372 AVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMAARC 431 + G AA+L+ WLGP S A I F G++ A A L G P+ + Sbjct 369 SAACGQLRAAADLYTWLGPGRTETESPFAAITFLGIGNVDDANAAL-AGHTGSPSSSTVG 427 Query 432 ARNLAEGLLLTMDQPYPVAMAKLGQAIATE--QSLSQVIPDSPAALVTLAAIHAGDPVRA 489 A LA GL+ ++ P A+ + +A++ S+ PDS ALV LA +H G RA Sbjct 428 AATLANGLMQSVTGSAPSALNTMSRALSLPGGSGTSEFQPDSAPALVALALLHNGAHERA 487 Query 490 RSVIGRAVRAG--ADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWA 547 +V+ A+ A + + R HLL WI M G +A D+ L RDAL+ Sbjct 488 AAVVAAAIAADDASSHTWARLHLL-DAWIAMTRGH-DTAVEDLPEEVVRGPLRERDALFL 545 Query 548 AALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHT 607 A+ ++RR+GD+ L++ W A L+ S+DLF LLP+GELW+AA R+ + +Q++H Sbjct 546 HAMIVGLARRSGDLAQLRRAWSGAAGTLSSCSVDLFNLLPIGELWLAAVRLDEAEQVEHL 605 Query 608 LDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSD 667 +D A TLL +LG P LWS+ LHW GV A IL+ SP + PH L T A L+ Sbjct 606 VDDARTLLRALGEPPLWSSPLHWYGVQASILSQSPADLLPHAHTLAESAKTHTYAAGLAT 665 Query 668 AGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARD 727 AGR WL ++ +VDAD+V AAAR+L+ +GL DA RLAG+AAL+T D + + A+L +AR Sbjct 666 AGRQWLLLMQGSVDADDVEAAARTLNRIGLPWDAARLAGEAALRTPDTKSATALLHVARS 725 Query 728 LKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARL 787 L+ + + + D S PP S L++RE+EVAEL+++G+ YR+IG RL Sbjct 726 LRTTSTAETNATDSTD----SAAPP--------SVLTEREQEVAELVVVGLTYREIGERL 773 Query 788 FISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPE 824 +ISAKTVEHHVARI++R+GA SRSE+L++LR+M P Sbjct 774 YISAKTVEHHVARIKRRVGAQSRSELLTILRSMTPPN 810 >gi|257057630|ref|YP_003135462.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587502|gb|ACU98635.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length=836 Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 282/824 (35%), Positives = 396/824 (49%), Gaps = 67/824 (8%) Query 34 ELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETA--LVID 91 +A P ++ + G GKT VL R G TV G+ + A +++D Sbjct 41 NIARGTLAPARLAVVAPGGHGKTAVLHHLARRCERHGTTVSWF----GQDDDAADLVLVD 96 Query 92 DAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRISLGPLP--- 148 DA L D L L D +V AA L A+ L R R ++ L PL Sbjct 97 DAHTLPDAALAELHALAEDETRGLVVAARPWPRPTTLNAV---LSRLRGQVVLRPLDRRR 153 Query 149 -----------VAEHLRDCTAGLP-FLIHAVSARAQA---PAQAAKV--ALIERLRRLDE 191 +AE + T G+P F + +A +A P + + +++ R Sbjct 154 IAALLGRERAALAEFVHAQTLGIPGFAVRLATAFGKAGDPPRDSTDLPASVLAEFR---- 209 Query 192 PTLDTLLMMSLTHELGV-----SDVAAALGISVTDARGL---VDRAHASGLIESSHTAAF 243 P LD L +L+ L DV G+ TD G+ +D A GL++ H Sbjct 210 PDLDGLTGEALSLLLAAVSGAGPDVDLLAGLLDTDRHGVARAIDAVRACGLLD--HDGTP 267 Query 244 LQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRD-ERLADILTRY 302 L V A+ +V + V L+R QLD L L L GL E Sbjct 268 LPLVAHAVKALVPSEQRLAVSQRLVRLQLDRKGPVLNLVLPLLGSGLSGAEPAQAFEAAA 327 Query 303 AADTRDASVRCARLYRAAVHAG--AKGLTVRLADALARTGDCTAAATLADDLLSSPDATE 360 A+LY AA AG + L R A+A AR GD A LAD +L+ P+A Sbjct 328 DEAAESDPALAAKLYSAAASAGRSERALGRRWAEAAARAGDLDTALRLADQVLTDPEAEG 387 Query 361 RAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 RA A AA+ V+ G A EL+ W P V +A + D AT + Sbjct 388 RADAASTAATACVYKGQLDRAGELYLWADTQP-ARVHAALVSLQQGKLDKATELLAAQPS 446 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSL--SQVIPDSPAALVTL 478 DA PPT+ A L G++ ++ + A++ L + + + S +PD+PAA+ L Sbjct 447 DA-PPTLFAGAMSALVRGVIQSVTEDPTTALSTLADSAEMLEPVGRSLFLPDTPAAVGAL 505 Query 479 AAIHAGDPVRARSVIGRAVRAGADPLFQR-RHLLLSGWIKMQEGQLPSASADVAAASAGT 537 +H G+ ARS++ RAV L R RHLLLS WI M G +A+ + AG Sbjct 506 VGMHCGELSLARSLLERAVDTEVGGLAGRTRHLLLSAWISMLTGDTDTATRTLQ--RAGD 563 Query 538 HLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAAR 597 L RD L+A AL+ ++RRTGD L+ W A E + DLF ++P GEL V AAR Sbjct 564 RLSPRDELFAIALRIGVARRTGDSARLRTLWAEARETVIRLRADLFTIMPFGELAVVAAR 623 Query 598 MRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVA 657 + + D+L H LD+ LL +LG+P LW+ HW+G+HA I A+ + VA H +AL Sbjct 624 VGEHDRLTHHLDRVRRLLHALGDPPLWTAMAHWSGLHAAIAADRRDEVAEHARALTGWDG 683 Query 658 HSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARV 717 +S+ +A+++A WL L NV AD V +AA L VGL DA RLAGQAA++T+D Sbjct 684 YSSFHKAMAEAAACWLDTLNGNVRADRVESAATRLHAVGLRWDAARLAGQAAIRTTDRTA 743 Query 718 SGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLG 777 +L+ AR L + PS D P P + LS+RER+VAEL++ G Sbjct 744 MVTLLERARTL-------QGPSSTSDQR-------QPTASPGEAVLSERERQVAELVVSG 789 Query 778 MPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAML 821 + YR IG RLFISAKTVEHH+AR+RQRLGA SR ++L+ LR ++ Sbjct 790 LTYRQIGDRLFISAKTVEHHMARMRQRLGATSRPDLLARLRTLV 833 >gi|333921741|ref|YP_004495322.1| transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333483962|gb|AEF42522.1| Transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] Length=860 Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 279/829 (34%), Positives = 402/829 (49%), Gaps = 60/829 (7%) Query 42 PVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETA---LVIDDAQLLTD 98 PV +I G G+GKT+ L AR +G V G A L++DD Sbjct 41 PVHRIILGTAGSGKTSALRIARSAFEATGARVTTSLENIGAIDAVAGSVLLVDDVHRCGP 100 Query 99 TELLRLTERVADSRLTVVAAAEAREHHRALR---------ALTMALERDRPRISLGPLPV 149 T L L + +V+ A R R + ALT+ PR++ V Sbjct 101 TALADLEAIMRRRDTSVLLTARPRSSRRIIERLLSTSGSSALTLG-AMTSPRVAQRAREV 159 Query 150 AEH--LRD-------CTAGLPFLIHAV-----SARAQAPAQAAKV------ALIERLRRL 189 H RD T G P +H V RA P AA+V A + R R Sbjct 160 LGHDLRRDHIAAIMAITGGQPDGVHEVLTMLQHGRAVLP-DAARVIDEAGQAWVSR-RFA 217 Query 190 DEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHD 249 + P L + + VA LG+S +A L+D A SGL+ H Q + Sbjct 218 ELPALVQQAVAAAEFATAAPIVAETLGVSPDEAAELLDEARDSGLLLD-HDKVTPQ-LKA 275 Query 250 AIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADTRDA 309 +G ++ + + ++ AL A++ + + ++A L R + D Sbjct 276 CFTDQLGPTKLAQLRSHAASALASSHALTTAAALTFAQYHVVNPQVASYLIRASERCSDT 335 Query 310 SVRCARLY---RAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATER----- 361 A A A ++ A+ ART D A AD + + +T+ Sbjct 336 DPNQAATLLDAAYAAGASLADFALQRAEVAARTSDYGGALHFADAVTNRALSTDGRQCAD 395 Query 362 -AAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLK 420 A A+R++A+VA G HAA+L+ WLG + A IV A GD TAR L+ Sbjct 396 LADAIRISATVATSRGMVAHAADLYRWLGADRAGADAPIAAIVLYAAGDGETARTVLQQA 455 Query 421 DAGPPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIA--TEQSLSQVIPDSPAALVTL 478 PT A+ R LAEG+ +M ++A L +A++ + + + +PD AAL Sbjct 456 APTIPTTYAQGLRLLAEGIGASMSGSGKSSIAMLARAVSMLSPPPVRRAMPDHAAALAAT 515 Query 479 AAIHAGDPVRARSVIGRAVRAGADP--LFQRRHLLLSGWIKMQEGQLPSASADVAAASAG 536 AA+H GD A S++ ++ A P R LLS W M G +P+A+A + AA+A Sbjct 516 AALHCGDLAAAESILAASL-ADHRPEAAVTARLQLLSAWTSMLAGDIPAATARLRAATAH 574 Query 537 THLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAA 596 RD L+ L+ ++RR + L W AA +A S DLF+LLP+GELW+A+A Sbjct 575 PLPSARDRLFEYGLRAGLARRADNAADLNTCWTAARPVIAACSADLFSLLPIGELWIASA 634 Query 597 RMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMV 656 + ++ H +DQA T+L LG+P LW+ HW GV A I+ + P+ + PH LGA Sbjct 635 HLSLQSEVTHLIDQAGTVLKDLGSPILWAAPFHWCGVQAAIIGDRPDDLVPHAHHLGAAA 694 Query 657 AHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDAR 716 S A AL+ AG++W+RVLA + +V A+AR L+ G + D RLA + +++D R Sbjct 695 HASEYAAALATAGKSWIRVLAREFNPADVEASARGLAGAGHSWDGARLAAEGGFRSNDPR 754 Query 717 VSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAP-RQPPAGSPLSDREREVAELLL 775 + ++LQLAR LKL SGA +PA+G P AP + P G LS RE E+A L++ Sbjct 755 AAASLLQLARTLKLTG-----ASGAMAPDPANG-PAAPASRVPGG--LSVREAEIASLVV 806 Query 776 LGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPE 824 G PYR+IG RLFI+ KTVEHHVARIRQR+GA SR EMLSMLR+M P+ Sbjct 807 QGFPYREIGERLFIAPKTVEHHVARIRQRIGAQSRGEMLSMLRSMGFPQ 855 >gi|134096906|ref|YP_001102567.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006652|ref|ZP_06564625.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909529|emb|CAL99641.1| transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length=822 Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 208/528 (40%), Positives = 280/528 (54%), Gaps = 44/528 (8%) Query 315 RLYRAAVHAGAKGLTVRLADALART--GDCTAAATLADDLLSSPDATERAAAVRVAASVA 372 RL+ AAV AG V A A G A LAD ++ P +RA V+VAASV Sbjct 322 RLFDAAVSAGVPESRVAARRARAAAAAGRLDEALRLADRVIVDPAVPDRALGVQVAASVL 381 Query 373 VHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKD--------AGP 424 H G +A+L W D + S T +AA G + T R LR D +GP Sbjct 382 AHRGLLAQSADLCAW---SVDNLRWSGDT-AYAAVGLVGTGR--LREADELLSSRRESGP 435 Query 425 PTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQ--VIPDSPAALVTLAAIH 482 PT + A LA G+ ++ A++ L +A A + ++PDSPAA+ A+H Sbjct 436 PTSLSGAAAKLAGGVRESVTGAATSALSTLVRAAALADPVGPGVMLPDSPAAIAATVALH 495 Query 483 AGDPVRARSVIGRAVRAGAD-PLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHR 541 G+ A S + +AV +G+ PL + RH LL+ W+ + G + +A A S + L Sbjct 496 CGELDVAESSLAKAVESGSGGPLLEVRHRLLAAWVPLMRGD--TVTARQALGSVPSELAA 553 Query 542 RDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQV 601 RD L A AL I+ R D+ AL A +A AE+S DLF LLPLGEL VA AR+ Sbjct 554 RDRLLATALHAGIAGRDNDMTALTAIRGQARQAAAEHSPDLFCLLPLGELVVATARLHDQ 613 Query 602 DQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTL 661 D L L +A LL +LGNP LW++ L W + A ++ +S A H LG H+ + Sbjct 614 DWLTPYLHEAQALLSALGNPPLWTSMLTWKCLQAAVVVEDMDSAARHAADLGETAHHNPM 673 Query 662 AQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAM 721 + A+++A R WLRVL VD DE AAR L GLT D RLAGQAA++T+D + ++ Sbjct 674 SAAMAEAARMWLRVLDGQVDQDEAERAARGLHAAGLTWDGARLAGQAAIRTTDRKAMLSL 733 Query 722 LQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPA----GSPLSDREREVAELLLLG 777 L+ AR L+ G P PR A G LSDREREVA+L+L G Sbjct 734 LECARALQ-------------------GKQPRPRAMSANAGEGELLSDREREVAQLVLAG 774 Query 778 MPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLAPES 825 + Y+ +G RLFISAKTVEHH+ RIRQRLG SR E+L LR ++ E+ Sbjct 775 LTYKQVGKRLFISAKTVEHHIGRIRQRLGCQSREELLDRLRELVGSEA 822 >gi|331700300|ref|YP_004336539.1| regulatory protein LuxR [Pseudonocardia dioxanivorans CB1190] gi|326954989|gb|AEA28686.1| regulatory protein LuxR [Pseudonocardia dioxanivorans CB1190] Length=935 Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 314/901 (35%), Positives = 434/901 (49%), Gaps = 116/901 (12%) Query 27 AARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPET 86 AARR E+ P P +V + G G GKT +L D R SG VL PP+ + Sbjct 39 AARRLYREIVTDPAAPRRVDVVGPAGHGKTVLLDLVADAYRASGAVVLRALPPEDVAADD 98 Query 87 ALVIDDAQLLTDTELLRLTE--RVADSRLTV----------VAAAEAREHHRALRALTMA 134 LV+DD LL +L RL + RL V VAA + A Sbjct 99 VLVLDDVHLLPGADLRRLRDIALARTQRLVVAHRPWPSGPDVAALGGAIAAGGALLVLGA 158 Query 135 LERDRPRISLG---------PLPVAEHLRDCTAGLPFLIHAVSAR--------------- 170 L DRP ++ P+P+ +H++ TAGLP L+ A Sbjct 159 L--DRPGVAARAARALRERPPVPLVDHVQAQTAGLPALVDRFLAGLLDQIGPDRTRLERP 216 Query 171 ----AQAPAQ------AAKVALIERLRRL------DEPTLDTLLMMSLTHELGVSDVAAA 214 ++ P Q A + +R+R L P DT +++ L LG++D AA Sbjct 217 GGLPSRPPQQLVQQLGYAVYGMEQRVRELLVALALGAPR-DTEVLVPL---LGLAD-AAG 271 Query 215 LGISVTDARGLVDRAHASGLIESSHTAAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDI 274 GI D LV+ A ++G + + A V AI Q V A E+ +L +LD Sbjct 272 GGIDEIDE--LVEEARSAGHLTAD--GALPPIVATAIRQRVPGARRLEIRRTLAEIELDR 327 Query 275 SPVSAELALRLAEHGLRDERLADILTRYAADT-RDASVRCARLYRAAVHAGAKGLTVRLA 333 A L + G R A++ A + R RLY AAV AGA L + Sbjct 328 GGSVLTAARGLLDTGATGARAAEVFVAGADEAARAGDPVAGRLYAAAVAAGAPALRLAAR 387 Query 334 DALART--GDCTAAATLADDLLSSPDATE---RAAAVRVAASVAVHDGNTGHAAELFGWL 388 A A GD A AD +LS D+ E A AA+V H G +AEL+ W+ Sbjct 388 RAEAAVRAGDLDLALAQADQVLSHVDSVEVEDAVLAGTAAAAVLAHRGLLARSAELYRWM 447 Query 389 GPHPDTMVSSAATIVFA--ANGDLATARA--------------------------TLRLK 420 DT +AA V A G L ARA +L Sbjct 448 SAA-DTGGETAALAVPALIGTGALEEARALLAPAAPPTPAPPPPGQGASVLGPPPSLFGD 506 Query 421 DAG--------PPTMAARCARNLAEGLLLTMDQPYPVAMAKLGQAIATEQSLSQ--VIPD 470 G PPT+ A +A G+L ++ AM++L ++ + +S ++ ++PD Sbjct 507 PVGGSAPVLGRPPTLLASAEELMAAGVLDSVAGSPTRAMSQLARSASLLESSNRAALLPD 566 Query 471 SPAALVTLAAIHAGDPVRARSVIGRAVRAG-ADPLFQRRHLLLSGWIKMQEGQLPSASAD 529 +PAAL L A+H G+ A+SV+ RAV A P RH LL WI + G + SA A Sbjct 567 TPAALAALVAVHCGELDVAQSVLDRAVVAELGGPAAVARHQLLLAWIAVFRGAIGSARAI 626 Query 530 VAAASAG-THLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPL 588 +AA SA L RD AAAL+ +I+RR GD+ AL W A EA+ + +DLF L PL Sbjct 627 LAATSADDARLEPRDEFLAAALEVSIARRDGDLAALMPAWARAREAIVRHPVDLFVLQPL 686 Query 589 GELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPH 648 GEL +AA R+R+ ++ LD+A TLLD LG PALWS LHW+ +HA I+A+ E A H Sbjct 687 GELAIAATRLRETSWVRPHLDEAATLLDRLGRPALWSAPLHWSQLHAAIVADDREDAARH 746 Query 649 GQALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQA 708 +AL S A A+++A W+R++ +VDAD V AAAR L VGL+ + +LAGQA Sbjct 747 AEALRVAAPVSRYATAMAEAAPHWVRMMDSDVDADAVEAAARGLHAVGLSWEGGKLAGQA 806 Query 709 ALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPP------AGSP 762 A++T D + A+L AR ++ G+ P S P R+P P Sbjct 807 AIRTRDRKAMTALLGAARAMQSGSPAPAPAPVPPRPSEPSPEPAPARRPAPEPDDLGDGP 866 Query 763 LSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLA 822 LS+REREVA+L+L G+ Y+ +G RLFISAKTVEHHVAR+RQRLG+GSR E+ + LR ++ Sbjct 867 LSEREREVAKLVLEGLTYKQVGERLFISAKTVEHHVARMRQRLGSGSRGELFAHLRQIVG 926 Query 823 P 823 P Sbjct 927 P 927 >gi|256374712|ref|YP_003098372.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919015|gb|ACU34526.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length=788 Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 280/817 (35%), Positives = 378/817 (47%), Gaps = 63/817 (7%) Query 27 AARRALLELANAPTVPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPET 86 AAR L E+A P +++ + G GKTT+L L ++G V A Sbjct 12 AARALLDEIAANPGAVLRLGVLAPGGHGKTTLLREVERALAQNGADVTA----------- 60 Query 87 ALVIDDAQLLTDTELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRISLGP 146 +DDA LL D EL L V +VV A RAL AL +L R RP P Sbjct 61 ---VDDAHLLGDDELRALRALVERGDTSVVVAYRPWPRSRALAALAESLGRVRPAHLPAP 117 Query 147 LP---------------VAEHLRDCTAGLPFLIHAVSARAQAPAQAAKVALIER--LRRL 189 L + + + T G+P + +S +P V R L L Sbjct 118 LTREQVRHALPPSTGRALVDFVHQQTGGVPRFVARLSG-LTSPELTPDVIASFRADLDWL 176 Query 190 DEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQSVHD 249 D LL L + + + LG ++D A A+GL+ T L Sbjct 177 DPDAQKFLLAAEAGAALRLDLLRSLLGGDADRVADVIDAARATGLLAPDGT--LLPVART 234 Query 250 AIAQIVGNAHHHEVETSLLRSQLDIS-PVSAELALRLAEHGLRDERLADILTRYAADTRD 308 A+A + V +L SQL PV + L G L+++ AA+ Sbjct 235 AVAALSRTDRRIAVRRALAESQLRAGGPVLDLVRPLLTAPG---PELSELFKAAAAEALP 291 Query 309 ASVRCARLYRAAVHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVA 368 + A AA+ + VR A A A GD +A LAD ++++ D T R AA VA Sbjct 292 SDPALAARLLAAIGTPTPEVAVRHATASAMAGDLDSALRLADRVVAAGDQTHRGAAAEVA 351 Query 369 ASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGPPTMA 428 A H G + EL W SA + FA G + PPT+ Sbjct 352 AIALAHRGQLARSTELHRW--------SPSATSTAFAHIGQIGVGALPAAPLPPAPPTLL 403 Query 429 ARCARNLAEGLLLTMDQPYPVAMAKLGQA--IATEQSLSQVIPDSPAALVTLAAIHAGDP 486 A +A G+L ++ A++ L +A + ++PDSPAAL L A+H+G+P Sbjct 404 GGAASLMAHGVLESVTGSPTTALSTLVRASGLLEPAGAGVLLPDSPAALAALVALHSGEP 463 Query 487 VRARSVIGRAVRAG-ADPLFQRRHLLLSGWIKMQEGQLPSASADVAA-ASAGTHLHRRDA 544 V A S + RAV +G L RH LL WI M G L A + A A L RD Sbjct 464 VVAESALDRAVASGLGGSLMAVRHRLLRAWIAMGRGNLERARETITALRRANRPLEPRDW 523 Query 545 LWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQL 604 ++A AL+ I+RR D+ L++ W A EA+ + +DL+ LPLGE AAAR+R +L Sbjct 524 IFAVALEIGIARRNSDLPTLKRTWEQACEAVLRHPVDLYTFLPLGEFAAAAARLRDQHRL 583 Query 605 QHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQA 664 L A LL LGNPALW+ LHW+G+HA ++A + H AL A Sbjct 584 APHLAAAEDLLRGLGNPALWAVPLHWSGLHAAVIAEEIPAAEEHAAALAAHRDSGRYCAI 643 Query 665 LSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQL 724 +S A +WL VLA VD D+V AAR L G DA RLAGQAA++TSD + +L Sbjct 644 VSSAAESWLDVLAGKVDPDQVERAARGLHAAGQWWDAARLAGQAAIRTSDRQAMVRLLDC 703 Query 725 ARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIG 784 AR L+ G P G EP +G LSDREREVAEL++ G+ Y+ +G Sbjct 704 ARLLQ-----GRPLGGRKPVEPETGQ--------ETGKLSDREREVAELVVGGLTYKQVG 750 Query 785 ARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAML 821 RLFISAKTVEHHVARIRQRLG SR+E+L LR ++ Sbjct 751 DRLFISAKTVEHHVARIRQRLGCTSRAELLDQLRQIV 787 >gi|300783411|ref|YP_003763702.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792925|gb|ADJ43300.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340524797|gb|AEK40002.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei S699] Length=791 Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 200/520 (39%), Positives = 274/520 (53%), Gaps = 35/520 (6%) Query 315 RLYRAAVHAGAK--GLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVA 372 RL+ AA AG + +T A A A +GD A L D +L + DA RA +AA+V Sbjct 290 RLFEAAAEAGDRSAAVTAGWARAAALSGDLDTALRLGDGMLGAADAETRAVGAEIAATVL 349 Query 373 VHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAG-PPTMAARC 431 H G +AEL+ W G D ++A GD+ AR L G PT+ A Sbjct 350 AHRGELARSAELYHWAG-RADAFSATA----LVGTGDIEGARRLLDSPAPGVAPTLFAGA 404 Query 432 ARNLAEGLLLTMDQPYPVAMAKL-GQAIATEQSLS-QVIPDSPAALVTLAAIHAGDPVRA 489 A +A G++ ++ ++ L G A E +L ++PDSPAAL L A+H G+ A Sbjct 405 ATRMARGIVDSVSGCATETLSTLLGAATMLEPALGGMLLPDSPAALAALVALHTGELALA 464 Query 490 RSVIGRAVRAGAD-PLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAA 548 SV+ RA+ GA L RH LL GW+ M G L +A A+ A AG L RD L+ A Sbjct 465 ESVLTRALDGGAGGDLLAVRHRLLLGWVAMTAGDLATA-AEHRDAVAGLSLEARDELFFA 523 Query 549 ALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTL 608 L+ ++RR D+ LQ+ W A +A DLF LLPLGEL +AAAR +L Sbjct 524 TLELGLARRASDLVGLQRSWNRAYQASMRQQTDLFTLLPLGELAIAAARTGAFAKLSGQF 583 Query 609 DQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLA---QAL 665 ++A LL LG P LW+ SL W +HA I ++V H L + H+ +AL Sbjct 584 ERAHGLLARLGEPPLWTVSLVWHELHAAITLEDADAVKAH---LATLTTHAHCGRHPRAL 640 Query 666 SDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLA 725 + A + WL VL D +TAAA L +GL DA RLAGQAA++TSD + +L+ A Sbjct 641 ATAAQGWLAVLGGTFDPQTITAAAAELHDLGLRWDAARLAGQAAIRTSDRKAMVQLLEAA 700 Query 726 RDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGS---PLSDREREVAELLLLGMPYRD 782 R + A P AP +P AG+ LS+RE EVA L++ G+ Y+ Sbjct 701 RQFQ--------------GTAARRDPGAPSEPAAGTGLAALSERELEVARLVVEGLTYKQ 746 Query 783 IGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAMLA 822 G++LFIS KTVEHH+ARIR +LGA R E+L+ LR +L+ Sbjct 747 AGSKLFISGKTVEHHMARIRGKLGAADRRELLATLRELLS 786 >gi|220913827|ref|YP_002489136.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860705|gb|ACL41047.1| transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length=695 Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 204/566 (37%), Positives = 294/566 (52%), Gaps = 18/566 (3%) Query 261 HEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAADT--RDASVRCARLYR 318 H ++ L+ S + A LA GL D+R+A L A + D ++ C+ LY Sbjct 117 HALQRELVSSYAADGQPMGDFARELARGGLADQRVAAELEHTADKSLEHDPALACS-LYE 175 Query 319 AAVHAGAK--GLTVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDG 376 A+ AGA G R A A A GD +A + D LL S D + V VAA+V H G Sbjct 176 EALLAGADETGTAARRAQAAAANGDLDSATRIIDTLLVSVDPPDVRRGVDVAAAVWAHRG 235 Query 377 NTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAGP--PTMAARCARN 434 +A+ +GWLG + A + G+ A A A R DA P PT+ A Sbjct 236 MLARSADAYGWLGASRLGSSAPLAAVAMVGCGNRAGADALFR-ADAPPESPTLLAAALAG 294 Query 435 LAEGLLLTM----DQPYPVAMAKLGQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRAR 490 +G+L ++ Q P+ + A +L +P++PAAL L A+H+G+P A Sbjct 295 TGKGILESLAEDPQQALPILIHASDMLNAAGSALP--LPETPAALAALLALHSGEPYLAE 352 Query 491 SVIGRAVRAGADPLFQR-RHLLLSGWIKMQEGQLPSASADVAAASAGTH--LHRRDALWA 547 +V A AG + R LL W MQ+ +L A + AS H L RD Sbjct 353 TVCRAAAAAGQGGNAAKPRLFLLQAWSAMQQDKLEDARLSINEASKANHWPLVPRDEFLR 412 Query 548 AALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHT 607 AAL+ ++RR G+I L W A EA+ S+DL++LLP GEL + AAR+R+ ++ H Sbjct 413 AALEVGLARRNGEIAELVLAWERAREAMLHISVDLYSLLPWGELVITAARLRETRRIAHY 472 Query 608 LDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSD 667 D+A LL+ LG+P LW+ HWA V A +L+ +P ++APH AL ++ LA L+ Sbjct 473 FDEANQLLERLGSPPLWAVPFHWAAVQAALLSENPAALAPHATALARAAKNNHLAAVLAG 532 Query 668 AGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARD 727 AG+ W+ +LA +V AAAR L +G+ + RLAG AA + + + +L ARD Sbjct 533 AGKAWVSILAGAFQPADVEAAARGLGRMGMPWEGARLAGHAAARAGERKDMVRLLSCARD 592 Query 728 LK-LGNDFGEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGAR 786 L GN G S G+ A+ P GS LS+RE+EVA L+L G YR+IG Sbjct 593 LHPQGNATGNGSSETGEPRAAATAETGNGMHPDGSGLSEREKEVARLVLEGKTYREIGEA 652 Query 787 LFISAKTVEHHVARIRQRLGAGSRSE 812 ++IS +T EHH+AR+R+RLGA +RS+ Sbjct 653 IYISPRTAEHHIARMRRRLGAENRSD 678 >gi|119962298|ref|YP_948980.1| transcriptional regulator [Arthrobacter aurescens TC1] gi|119949157|gb|ABM08068.1| putative transcriptional regulator, LuxR family domain protein [Arthrobacter aurescens TC1] Length=694 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 203/577 (36%), Positives = 285/577 (50%), Gaps = 20/577 (3%) Query 263 VETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYA-ADTRDASVRCARLYRAAV 321 ++ L+ L ELA LA G ++ R+ L R A A + A LY A+ Sbjct 113 LQKELVDKTLQEGQALGELARDLARSGFKNPRVVAELERSADAVLETDPAQAAELYSEAL 172 Query 322 HAGAKGL--TVRLADALARTGDCTAAATLADDLLSSPDATERAAAVRVAASVAVHDGNTG 379 AG L R A A A TGD +A + D LL+ P+ + V VAA+V G Sbjct 173 MAGGTELDTAARRAQATAATGDLDSAGRIVDRLLAMPEPPDLRLGVDVAAAVWAQRGMLS 232 Query 380 HAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRL-KDAGPPTMAARCARNLAEG 438 +A+ + WLG + A + +G+ A L + +G PT+ A EG Sbjct 233 RSADTYSWLGSDRIDGSAPLAAVAMIGSGNSVGAEELLAVAPPSGSPTLLAVALSLTQEG 292 Query 439 LLLTMDQPYPVAMAKLGQA--IATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRA 496 L T+ +A+ +L +A + S +P++P+AL L A+H+G+P A +V+ A Sbjct 293 LRQTLGPAPELALPELIRASDMMNAAGTSIPLPETPSALAALCALHSGEPGVADTVLKAA 352 Query 497 VRAGADPLFQR-RHLLLSGWIKMQEGQLPSASADVAAASAGTH--LHRRDALWAAALQTA 553 + G R R LL W MQ+ A + A H L RD AAL Sbjct 353 LAGGQGGDAARPRLFLLRAWSSMQQDNADEARLAINEAVKANHWPLAPRDEFLLAALDVG 412 Query 554 ISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALT 613 ++RR D+ L W A EA+ S+DL++LLP GEL + AAR+R+ ++ H ++ A Sbjct 413 LARRGSDVHELVLAWDKAREAMMHVSVDLYSLLPWGELMITAARLRESRRVSHYVEGAWD 472 Query 614 LLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWL 673 LL LGNP LWS LHWA V A +L+ P +APH AL HS LA L+ G+ W+ Sbjct 473 LLGRLGNPPLWSVPLHWAAVQAALLSEDPAGLAPHAAALVRASEHSHLASVLAAGGKAWV 532 Query 674 RVLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGND 733 VLA +A +V AAR L+ VG+ + RLAG AA + R +L ARD+ Sbjct 533 SVLAGRFEASDVETAARGLAAVGMPWEGARLAGHAAAHADERRDMVKLLACARDIH--PQ 590 Query 734 FGEPPSGAGDTE---------PASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIG 784 P GA + + P+ P S LS REREVA L+L G YR+IG Sbjct 591 SAAPSGGASERQEDVHTAVVAPSVMDNGGGPGNPDSSGLSAREREVARLILEGKTYREIG 650 Query 785 ARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAML 821 ++IS +T EHHVAR+R+RLGA +RSE+L LR L Sbjct 651 EAIYISPRTAEHHVARMRRRLGAENRSELLVRLRLAL 687 >gi|302524779|ref|ZP_07277121.1| predicted protein [Streptomyces sp. AA4] gi|302433674|gb|EFL05490.1| predicted protein [Streptomyces sp. AA4] Length=794 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 174/448 (39%), Positives = 233/448 (53%), Gaps = 28/448 (6%) Query 383 ELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKDAG-PPTM----AARCARNLAE 437 E + W+GP V + ATI G + + G PT+ AAR A + E Sbjct 362 ESYRWVGPG---AVDAFATIALVGTGQATDVQPVANVPTPGVAPTLFTGAAARTASGIVE 418 Query 438 GLLLTMDQPYPVAMAKLGQAIATEQSLSQV-IPDSPAALVTLAAIHAGDPVRARSVIGRA 496 +L + P + G A E ++ +PDSPAAL LA +HAG+ A SV+ RA Sbjct 419 SVLGCGTEALPTLV---GAAAMLEPAVGGAPLPDSPAALAALAGLHAGELALAESVLERA 475 Query 497 VRA--GADPLFQRRHLLLSGWIKMQEGQLPSASADVAAASAGTHLHRRDALWAAALQTAI 554 + + G D L RH LL GW+ M G L +A+ + A AGT L RD L+ A L+ + Sbjct 476 LASSVGGD-LLATRHRLLLGWVAMTGGHL-AAATEHRDAVAGTKLEARDELFFATLELGL 533 Query 555 SRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTL 614 +RR D+ LQQ W A +A +DLF LLPLGEL +AAAR +L L++A + Sbjct 534 ARRASDLVGLQQSWERAYQASMRQQVDLFTLLPLGELAIAAARTGAHAKLSRRLERAHAM 593 Query 615 LDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLR 674 LD LGNP LW+ SL W +HA I + AL AL+ A WL Sbjct 594 LDRLGNPPLWTVSLCWHELHAAITTEDRATAEKQLAALNRFADCGRYPAALARAAGCWLA 653 Query 675 VLAENVDADEVTAAARSLSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDF 734 VL D E++AAA L + L DA RLAGQAA++TSD + +L+ AR + Sbjct 654 VLGGTFDPGEISAAAAELHELDLCWDAARLAGQAAIRTSDRKAMVQLLEAARQFQ----- 708 Query 735 GEPPSGAGDTEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTV 794 G T PAP S LS+RE EVA L++ G+ Y+ G++LFIS KTV Sbjct 709 -------GTTGRLESATPAPGAATGLSALSERELEVARLVVDGLTYKQAGSKLFISGKTV 761 Query 795 EHHVARIRQRLGAGSRSEMLSMLRAMLA 822 EHH+ARIR +LGA R E+L+ LR +LA Sbjct 762 EHHMARIRGKLGAADRRELLATLRELLA 789 >gi|343926326|ref|ZP_08765835.1| putative LuxR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343763955|dbj|GAA12761.1| putative LuxR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=813 Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 251/831 (31%), Positives = 362/831 (44%), Gaps = 89/831 (10%) Query 41 VPVKVLITGGIGTGKTTVLAAARDTLRRSGLTVLACPPPDGEPPETALVI-DDAQLLTDT 99 +P+ + G G+G+T +L + L + V P G+ +V+ DD Sbjct 16 LPLCAIAVGFPGSGRTGLLNVVSEGLCELDVPVSVGMPTGGDSAGPTVVLADDLHTWPSD 75 Query 100 ELLRLTERVADSRLTVVAAAEAREHHRALRALTMALERDRPRISLGPLPVAEHL-RDCTA 158 + R+ V + ++A AE RE LRA+ R + LG + A+ L R A Sbjct 76 LVARMATMVDAGTIGLIATAEPRETDPILRAVLDLARRSATVLDLGTMSTADVLIRAARA 135 Query 159 GLPFL---------------------IHAVSARAQAPAQAAKV---ALIER--------- 185 GL + A+ A A V A++ER Sbjct 136 GLTLTPATASQIRRRCGGVRNVVTAALLAIREEAAAAGLGETVDEPAVVERVARDHHHRL 195 Query 186 LRRLDEPTLDTLLMMSLTHELGVSDVAAALGISVTDARGLVDRAHASGLIESSHTAAFLQ 245 LR LD TL L + S L +A L + A +DRA SGL+ + F+ Sbjct 196 LRGLDPTTLSVLALASSRAPLDPESLAETLDVPYETAVEALDRARGSGLLRGADV--FVS 253 Query 246 SVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALRLAEHGLRDERLADILTRYAAD 305 + D + +VGN ++ + + +L S ++ + AL AE G+ D RL D L A D Sbjct 254 AAADPLRSVVGNRRLEQLRRTSIAVRLRASELTVDDALHAAESGIEDPRLVDTLLAGAVD 313 Query 306 TRDASVRCARLYRAA--VHAGAKGLTVRLADALARTGDCTAAATLADDLLSSPDATERA- 362 + R L RAA V G + + +A +GD A +AD L S E+ Sbjct 314 A--GAARAVVLLRAADRVEPGRDDVRLLMAQRALASGDADGAGEVADIRLESAHPAEKGI 371 Query 363 -AAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAATIVFAANGDLATARATLRLKD 421 V +AA VA G HAA+L+ WLGP S +A A GD A A A Sbjct 372 ECWVGIAALVAAQRGLGSHAADLYRWLGPDHVAAESLSAVTALVAVGDRAGAAAVAAADG 431 Query 422 AGPPTMAARCARNLA-EGLLLTMDQPYPVAMAKLGQAIA-TEQSLSQVIPD--SPAALVT 477 PP + AR R+LA GLL ++ + G A+ + L+ +P PAA T Sbjct 432 GRPP-VGARAVRSLAARGLLASVSDDFGDGDGVAGDAVGLVVRGLTATMPGRWDPAAART 490 Query 478 L-----AAIHAGDPVRARSVIGRAVRAGADPLFQRRHLLLSGWIKMQEGQLPSASADVAA 532 L A+++GD AR++ A L L G ++ LP+A A Sbjct 491 LHAATALALNSGDLNAARALRKAAGDCATGTLLDAEIALTGGDLETATRLLPTAEPAGAV 550 Query 533 ASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLPLGELW 592 D L A++ ++ R GD AL W A LA +DL+ L L E W Sbjct 551 ----------DRLRVHAVRLGLAHRHGDTSALAALWPEASALLAATEVDLYLLRSLAEFW 600 Query 593 VAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAPHGQAL 652 AAR+ + + A LLD+L NP +W+ H+AGV A ++A E + L Sbjct 601 QVAARLDDTASIDRYIAAADRLLDALDNPMIWAAPWHFAGVQAAVIAGDAELATGRQRHL 660 Query 653 GAMVAHSTLAQALSDAGRTWLRVLAEN---VDADEVTAAARSLSHVGLTSDATRLAGQAA 709 ++ A + A L A R W + E +D +V A +L GL +A RLAG +A Sbjct 661 DSIAARNASASGLVTAARAWSALTFEQAGTIDDAQVADAIAALRLRGLDWEAGRLAGISA 720 Query 710 LQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQP-PAGSPLSDRER 768 L++ D + +L+ AR + R+P P L++RE Sbjct 721 LRSDDPHATAGLLETARSVDADR----------------------RRPRPVDGLLTEREA 758 Query 769 EVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRA 819 EVA LL G YR+IGARLFISAKTVEHHV+RIR+RL AGSRSE+++ LRA Sbjct 759 EVARELLQGFTYREIGARLFISAKTVEHHVSRIRRRLDAGSRSELMAALRA 809 >gi|325964551|ref|YP_004242457.1| DNA-binding protein with HTH domain [Arthrobacter phenanthrenivorans Sphe3] gi|323470638|gb|ADX74323.1| DNA-binding protein with HTH domain [Arthrobacter phenanthrenivorans Sphe3] Length=693 Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 214/604 (36%), Positives = 303/604 (51%), Gaps = 24/604 (3%) Query 225 LVDRAHASGLIESSHTAAFLQSVHDAIAQIVGNAHHHEVETSLLRSQLDISPVSAELALR 284 LV+RA A+GL+ + + + A+ + A H ++ L+ + + A Sbjct 81 LVERAEAAGLLTAD--GSVVGPAQHALLTVAPTAKVHALQRELVTAYASQGQPLGDFARE 138 Query 285 LAEHGLRDERLADILTRYAADT--RDASVRCARLYRAAVHAGAK--GLTVRLADALARTG 340 LA GL D R+A L +A D ++LY A+ AGA G R A A A G Sbjct 139 LARGGLADPRVAAEL-EHAGDKALEHNPALASQLYGEALLAGADETGTAARRAQAAAADG 197 Query 341 DCTAAATLADDLLSSPDATERAAAVRVAASVAVHDGNTGHAAELFGWLGPHPDTMVSSAA 400 D AA + D LL + + VAA+V G AA+ + WLG + A Sbjct 198 DLDAATRIIDTLLVCDNPPDVRRGADVAAAVWAQRGMLARAADAYSWLGATRMGPSAPLA 257 Query 401 TIVFAANGDLATARATLRLKDAGP--PTMAARCARNLAEGLLLTM-DQPY---PVAMAKL 454 + G+ A A A R DA P PT+ A +G+L ++ + PY PV + Sbjct 258 AVAMVGCGNRAGAEALFR-ADAPPASPTLLAATLAETGKGVLGSLGEDPYQALPVLIHAA 316 Query 455 GQAIATEQSLSQVIPDSPAALVTLAAIHAGDPVRARSVIGRAVRAG-ADPLFQRRHLLLS 513 A +L +P++PAAL L A+H+G+P A V A AG + R LL Sbjct 317 DMFNAAGAALP--LPETPAALAALVALHSGEPHLAEGVCRAATAAGQGGNAAKPRLFLLQ 374 Query 514 GWIKMQEGQLPSASADVAAASAGTH--LHRRDALWAAALQTAISRRTGDIGALQQHWYAA 571 W MQ+ +L A + AS H L RD AAL+ ++RR G++ L W A Sbjct 375 AWSAMQQDKLEDARLAINEASKANHWPLVPRDEFLRAALEVGLARRNGEVPELVMAWERA 434 Query 572 MEALAEYSLDLFALLPLGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWA 631 EA+ S+DL++LLP GEL + AAR+R+ ++ H LD+A LLD LG+P LW+ HWA Sbjct 435 REAMLHTSVDLYSLLPWGELMITAARLRETRRVAHYLDEARQLLDRLGDPPLWAVPFHWA 494 Query 632 GVHAGILANSPESVAPHGQALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARS 691 V A +L SP +APH AL S LA L+ AG+ W+ VLA +V +AAR Sbjct 495 AVQAALLGESPAQLAPHAAALARAARTSHLAAVLAAAGKAWVSVLAGRFTTADVESAARG 554 Query 692 LSHVGLTSDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTP 751 L VG+ + RLAG AA + + + +L ARDL G +GAG + A P Sbjct 555 LGRVGMPWEGARLAGHAAAKAEERKDMVRLLSCARDLH--PQPGPAGNGAGSGQDARAVP 612 Query 752 PAPRQPPA---GSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAG 808 A GS LS+RE+EVA L+L G YR+IG ++IS +T EHH+AR+R+RLGA Sbjct 613 AAETAGSIQQDGSGLSEREKEVARLVLEGKTYREIGEAIYISPRTAEHHIARMRRRLGAE 672 Query 809 SRSE 812 +RS+ Sbjct 673 NRSD 676 >gi|159037265|ref|YP_001536518.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916100|gb|ABV97527.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length=818 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 129/360 (36%), Positives = 190/360 (53%), Gaps = 29/360 (8%) Query 467 VIPDSPAALVTLAAIHAGDPVRARSVIGRAVRAG-ADPLFQRRHLLLSGWIKMQEGQLPS 525 V+PDSP AL L A AGD A ++ + AG P+ RRH LL + +M+ G+ + Sbjct 473 VLPDSPHALGALVAGLAGDVSTAERLLLAGLAAGVGGPVTARRHQLLLAFTRMRAGRYDT 532 Query 526 ASADVAAA---SAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDL 582 A+A++A +A H RD L AAAL ++RR+GD+ +++ W LA ++DL Sbjct 533 AAAELAPGPDPTAWDHPTARDQLLAAALAAGMARRSGDVARMREAWNGVETQLARRAVDL 592 Query 583 FALLPLGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSP 642 FA+ L EL V AAR+R++ + Q +D L+ G+P W ++ W V +A + Sbjct 593 FAIEVLEELVVTAARLRRMVRAQPVMDVLDDLVARAGDPPTWVVAVGWIRVQ---VAVAL 649 Query 643 ESVAPHGQALGAMVAHSTLA----QALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLT 698 E A G + + LA +A A W VLA VD D V + A L+ L Sbjct 650 EDTATAATLAGELATAAPLAGPRQRAQGAAALAWSDVLAGKVDVDRVCSVAGDLATNQLP 709 Query 699 SDATRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPP 758 DA+RL GQAA++T+DA + +L+ AR L G G+ +G Sbjct 710 WDASRLVGQAAIRTTDATAARRLLEHARGLSAAE------VGGGEQRGRAGV-------- 755 Query 759 AGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLR 818 LS+RE V ++L G R+IG++L++S KTVEHHVAR+R +L A SR+E L+ LR Sbjct 756 ----LSEREIAVGRMVLEGRTQREIGSQLYLSPKTVEHHVARMRTKLDASSRAEFLAALR 811 >gi|145594196|ref|YP_001158493.1| regulatory protein LuxR [Salinispora tropica CNB-440] gi|145303533|gb|ABP54115.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length=794 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 126/357 (36%), Positives = 186/357 (53%), Gaps = 29/357 (8%) Query 467 VIPDSPAALVTLAAIHAGDPVRARSVIGRAVRAG-ADPLFQRRHLLLSGWIKMQEGQLPS 525 V+PDSP AL L A GD A ++ + AG P+ RRH LL + +M+ G+ + Sbjct 455 VLPDSPHALGALVAGLTGDTSTAERLLHAGMAAGVGGPVTIRRHQLLLAFTRMRTGRYDT 514 Query 526 ASADVAAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFAL 585 A+A++ G + RD L AAL ++RR+GD+ +++ W LA ++DLF + Sbjct 515 AAAELVP---GPYPTARDQLLTAALTAGMARRSGDVARMREAWNGVETQLARRTVDLFVI 571 Query 586 LPLGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESV 645 L EL VAAAR+R++ + + +D L+ G+P W ++ W V +A + E Sbjct 572 EVLEELVVAAARLRRMVRAEPVMDVLDDLVARAGHPPTWVVAVGWIRVQ---VAVALEDT 628 Query 646 APHGQALGAMVAHSTLA----QALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDA 701 A G + + LA +A A W VLA VD D V + A L+ L DA Sbjct 629 ATAATVAGELTRTAALAGPRQRAQGAAAVAWADVLAGTVDIDRVCSVADDLATHQLPWDA 688 Query 702 TRLAGQAALQTSDARVSGAMLQLARDLKLGNDFGEPPSGAGDTEPASGTPPAPRQPPAGS 761 +RL GQAA++T+DA + ML+ AR L + G G+ +G Sbjct 689 SRLVGQAAIRTTDATAARRMLEHARGLSVTE------VGGGEQRGRAGV----------- 731 Query 762 PLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLR 818 LSDRE V ++L G R+IG+ L++S KTVEHHVAR+R +L A SR+E L+ LR Sbjct 732 -LSDREIVVGRMVLEGRTQREIGSHLYLSPKTVEHHVARMRTKLDASSRAEFLAALR 787 >gi|326902164|gb|EGE49097.1| LOW QUALITY PROTEIN: transcriptional regulator, LuxR family protein [Mycobacterium tuberculosis W-148] Length=72 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%) Query 761 SPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAM 820 SPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAM Sbjct 1 SPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQRLGAGSRSEMLSMLRAM 60 Query 821 LAPESLTADERR 832 LAPESLTADERR Sbjct 61 LAPESLTADERR 72 >gi|325001456|ref|ZP_08122568.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length=213 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/202 (45%), Positives = 117/202 (58%), Gaps = 0/202 (0%) Query 528 ADVAAASAGTHLHRRDALWAAALQTAISRRTGDIGALQQHWYAAMEALAEYSLDLFALLP 587 A V AS L RD AA+LQ AI+RR D+GAL + W A +A+ + +DLF L P Sbjct 9 AAVDTASGDRPLEPRDEFLAASLQVAIARRNSDVGALMRSWTRARQAIVRHPVDLFVLQP 68 Query 588 LGELWVAAARMRQVDQLQHTLDQALTLLDSLGNPALWSNSLHWAGVHAGILANSPESVAP 647 LGEL AA R+R+ ++ LD+A LLD LG PALW LHWA + A ++ + ++ Sbjct 69 LGELVTAATRLREESWVRPHLDEATALLDRLGRPALWGAPLHWAQLQAAVMVDDVDTARA 128 Query 648 HGQALGAMVAHSTLAQALSDAGRTWLRVLAENVDADEVTAAARSLSHVGLTSDATRLAGQ 707 H +AL S A A++ A W+ VL +DA V AAR L VGL+ D RLAGQ Sbjct 129 HTEALEREAGGSRFAHAMAAAAPHWVGVLENRIDAAAVEEAARGLHAVGLSFDGGRLAGQ 188 Query 708 AALQTSDARVSGAMLQLARDLK 729 AAL+T D R A+L AR L+ Sbjct 189 AALRTDDRRAVSALLACARALQ 210 >gi|284992805|ref|YP_003411359.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066050|gb|ADB76988.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length=218 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/70 (46%), Positives = 44/70 (63%), Gaps = 0/70 (0%) Query 744 TEPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQ 803 T P++ P P P LS REREV +LL G YR+IG+RLFIS KTVE H + + + Sbjct 139 TTPSAPQPEDPATDPGLDLLSAREREVMQLLARGYTYREIGSRLFISVKTVESHASNVLR 198 Query 804 RLGAGSRSEM 813 +L +R+E+ Sbjct 199 KLQLSNRNEL 208 >gi|297193410|ref|ZP_06910808.1| large transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151764|gb|EFH31341.1| large transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length=141 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/84 (43%), Positives = 49/84 (59%), Gaps = 1/84 (1%) Query 745 EPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQR 804 +PA T P P +P G LS REREVAEL G+ R+I L +S +TVE HVAR ++ Sbjct 54 QPAKETRP-PGRPSYGDRLSPREREVAELAGTGLTNREIATTLHLSPRTVEQHVARAMRK 112 Query 805 LGAGSRSEMLSMLRAMLAPESLTA 828 LG SR + ++ + PE+ A Sbjct 113 LGTASRQHLARIIDTAVLPETSNA 136 >gi|284989383|ref|YP_003407937.1| LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062628|gb|ADB73566.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length=755 Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/69 (50%), Positives = 45/69 (66%), Gaps = 4/69 (5%) Query 745 EPASGTPPAPRQPPAGSPLSDREREVAELLLLGMPYRDIGARLFISAKTVEHHVARIRQR 804 EPA+GTP P PL+ R+REVA+L+ GM R+I ARL IS +T E HV +I R Sbjct 681 EPAAGTP----APSGAGPLTRRQREVADLVAQGMTDREIAARLVISPRTAESHVEQILTR 736 Query 805 LGAGSRSEM 813 LG SR+++ Sbjct 737 LGFRSRAQI 745 Lambda K H 0.318 0.130 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2028668981616 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40