BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0340 Length=179 Score E Sequences producing significant alignments: (Bits) Value gi|15607481|ref|NP_214854.1| hypothetical protein Rv0340 [Mycoba... 351 3e-95 gi|289744036|ref|ZP_06503414.1| conserved hypothetical protein [... 348 2e-94 gi|289445879|ref|ZP_06435623.1| conserved hypothetical protein [... 347 5e-94 gi|340625371|ref|YP_004743823.1| hypothetical protein MCAN_03421... 346 7e-94 gi|118616398|ref|YP_904730.1| hypothetical protein MUL_0578 [Myc... 187 6e-46 gi|183980639|ref|YP_001848930.1| hypothetical protein MMAR_0613 ... 187 7e-46 gi|240173093|ref|ZP_04751751.1| hypothetical protein MkanA1_2752... 186 1e-45 gi|296164182|ref|ZP_06846783.1| conserved hypothetical protein [... 122 2e-26 gi|118470928|ref|YP_885101.1| hypothetical protein MSMEG_0693 [M... 88.6 3e-16 gi|169631368|ref|YP_001705017.1| hypothetical protein MAB_4290c ... 84.0 9e-15 gi|120401638|ref|YP_951467.1| hypothetical protein Mvan_0622 [My... 67.0 1e-09 gi|325673801|ref|ZP_08153491.1| hypothetical protein HMPREF0724_... 59.3 2e-07 gi|312141358|ref|YP_004008694.1| hypothetical protein REQ_40380 ... 59.3 3e-07 gi|145220879|ref|YP_001131557.1| hypothetical protein Mflv_0275 ... 58.5 4e-07 gi|108797425|ref|YP_637622.1| hypothetical protein Mmcs_0445 [My... 57.8 7e-07 gi|126433044|ref|YP_001068735.1| hypothetical protein Mjls_0432 ... 57.4 8e-07 gi|111022452|ref|YP_705424.1| hypothetical protein RHA1_ro05486 ... 55.1 4e-06 gi|169631362|ref|YP_001705011.1| hypothetical protein MAB_4284c ... 53.9 9e-06 gi|226304833|ref|YP_002764791.1| hypothetical protein RER_13440 ... 53.5 1e-05 gi|229492004|ref|ZP_04385820.1| conserved hypothetical protein [... 53.5 1e-05 gi|300783413|ref|YP_003763704.1| hypothetical protein AMED_1489 ... 44.7 0.005 gi|343928325|ref|ZP_08767776.1| hypothetical protein GOALK_114_0... 43.9 0.009 gi|256374710|ref|YP_003098370.1| hypothetical protein Amir_0557 ... 43.9 0.010 gi|302524781|ref|ZP_07277123.1| predicted protein [Streptomyces ... 42.0 0.042 gi|302529482|ref|ZP_07281824.1| predicted protein [Streptomyces ... 40.8 0.091 gi|296164183|ref|ZP_06846784.1| isoniazid inducible protein inib... 40.0 0.15 gi|331700294|ref|YP_004336533.1| hypothetical protein Psed_6592 ... 38.9 0.33 gi|220913826|ref|YP_002489135.1| hypothetical protein Achl_3085 ... 38.9 0.34 gi|325964550|ref|YP_004242456.1| hypothetical protein Asphe3_321... 38.1 0.49 gi|183980640|ref|YP_001848931.1| membrane protein, IniB [Mycobac... 37.7 0.71 gi|120401639|ref|YP_951468.1| hypothetical protein Mvan_0623 [My... 36.6 1.6 gi|145220878|ref|YP_001131556.1| hypothetical protein Mflv_0274 ... 35.8 2.7 gi|118616399|ref|YP_904731.1| membrane protein, IniB [Mycobacter... 34.7 5.9 gi|119866510|ref|YP_936462.1| hypothetical protein Mkms_0456 [My... 34.7 6.0 gi|108797426|ref|YP_637623.1| hypothetical protein Mmcs_0446 [My... 34.7 6.4 gi|332832881|ref|XP_520248.3| PREDICTED: steroidogenic factor 1 ... 34.3 7.9 >gi|15607481|ref|NP_214854.1| hypothetical protein Rv0340 [Mycobacterium tuberculosis H37Rv] gi|15839726|ref|NP_334763.1| hypothetical protein MT0355 [Mycobacterium tuberculosis CDC1551] gi|31791518|ref|NP_854011.1| hypothetical protein Mb0347 [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=179 Score = 351 bits (900), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 178/179 (99%), Positives = 179/179 (100%), Gaps = 0/179 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI Sbjct 1 MANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD Sbjct 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 Query 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG Sbjct 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 >gi|289744036|ref|ZP_06503414.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289684564|gb|EFD52052.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=179 Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 177/179 (99%), Positives = 178/179 (99%), Gaps = 0/179 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI Sbjct 1 MANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 GAAGGAHAGD GNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD Sbjct 61 GAAGGAHAGDCGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 Query 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG Sbjct 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 >gi|289445879|ref|ZP_06435623.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289418837|gb|EFD16038.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=179 Score = 347 bits (889), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 176/179 (99%), Positives = 177/179 (99%), Gaps = 0/179 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI Sbjct 1 MANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHG VGSVLNQPTPPGPGVTPTD Sbjct 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGVVGSVLNQPTPPGPGVTPTD 120 Query 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 PRPFRAGPHETSALLTSAEIPDTTSEDG LPTDHPAVWNHPVVDPHTVEPDHHGYDIHG Sbjct 121 PRPFRAGPHETSALLTSAEIPDTTSEDGELPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 >gi|340625371|ref|YP_004743823.1| hypothetical protein MCAN_03421 [Mycobacterium canettii CIPT 140010059] gi|340003561|emb|CCC42682.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=179 Score = 346 bits (888), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 176/179 (99%), Positives = 178/179 (99%), Gaps = 0/179 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSE I Sbjct 1 MANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSELI 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD Sbjct 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 Query 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVV+PHTVEPDHHGYDIHG Sbjct 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVEPHTVEPDHHGYDIHG 179 >gi|118616398|ref|YP_904730.1| hypothetical protein MUL_0578 [Mycobacterium ulcerans Agy99] gi|118568508|gb|ABL03259.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=179 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 112/179 (63%), Positives = 129/179 (73%), Gaps = 0/179 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFVI+LVRDP AAARYAANP ++IA+AHLTDVT ADVN+LIP+VSDSLSM+ P Sbjct 1 MANSLLDFVIALVRDPAAAARYAANPAQAIADAHLTDVTSADVNNLIPMVSDSLSMAGPS 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 GA GA D GNVWASGAA AALD+F+PH VV QH G V+N+PTP G D Sbjct 61 GAIAGAQPADHGNVWASGAAAAALDSFSPHVAGAVVPQHQPSGGVINEPTPVASGEVTAD 120 Query 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 P P PH+ S L T AE PD T + G LP PA+W+HPV PH EPDHHG+ IHG Sbjct 121 PHPVAFEPHQPSVLFTGAETPDPTFDHGVLPAADPAIWDHPVDHPHVTEPDHHGFGIHG 179 >gi|183980639|ref|YP_001848930.1| hypothetical protein MMAR_0613 [Mycobacterium marinum M] gi|183173965|gb|ACC39075.1| conserved hypothetical protein [Mycobacterium marinum M] Length=179 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 112/179 (63%), Positives = 129/179 (73%), Gaps = 0/179 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFVI+LVRDP AAARYAANP ++IA+AHLTDVT ADVN+LIP+VSDSLSM+ P Sbjct 1 MANSLLDFVIALVRDPAAAARYAANPAQAIADAHLTDVTSADVNNLIPMVSDSLSMAGPS 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 GA GA D GNVWASGAA AALD+F+PH VV QH G V+N+PTP G D Sbjct 61 GAMAGAQPADHGNVWASGAAAAALDSFSPHVAGAVVPQHQPSGGVINEPTPVASGDITAD 120 Query 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 P P PH+ S L T AE PD T + G LP PA+W+HPV PH EPDHHG+ IHG Sbjct 121 PHPVAFEPHQPSVLFTGAETPDPTFDHGVLPAADPAIWDHPVDHPHVTEPDHHGFGIHG 179 >gi|240173093|ref|ZP_04751751.1| hypothetical protein MkanA1_27521 [Mycobacterium kansasii ATCC 12478] Length=179 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/179 (64%), Positives = 134/179 (75%), Gaps = 0/179 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFVISLVRDPEAAARYAANP ++IA+AHLT+VT ADVN+LIPVVSDSLSM+ Sbjct 1 MANSLLDFVISLVRDPEAAARYAANPAQAIADAHLTNVTSADVNNLIPVVSDSLSMAGSA 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 GA G D GNVWASGAA AALDAF+PH A Q H V V+N+P PG G PTD Sbjct 61 GATAGTQIADHGNVWASGAAAAALDAFSPHTTAPAFQPHSPVSHVINEPVLPGSGDIPTD 120 Query 121 PRPFRAGPHETSALLTSAEIPDTTSEDGGLPTDHPAVWNHPVVDPHTVEPDHHGYDIHG 179 P P PHE S LL A++PD+T + GG P D PA+W+HP++ PHT +PDHHG+ IHG Sbjct 121 PYPVGIEPHEPSVLLAGADLPDSTFDHGGFPADDPAIWDHPIIHPHTADPDHHGFGIHG 179 >gi|296164182|ref|ZP_06846783.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900464|gb|EFG79869.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=185 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/190 (51%), Positives = 116/190 (62%), Gaps = 23/190 (12%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +AN+LLDFV+SLVRDP+AAARYAA+P ++IA+AHLT VT ADVN LIP+VSDSLSMS P Sbjct 1 MANALLDFVMSLVRDPQAAARYAADPAQAIADAHLTGVTSADVNHLIPMVSDSLSMSSPG 60 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGV---- 116 G G A + GNVWASGAATAA DAF H V + GA G PPG + Sbjct 61 GTGG---ATEHGNVWASGAATAAFDAFPAHVP--VHEPTGAAGQ-----GPPGHVIDHPP 110 Query 117 --------TPTDPRPFRAGPHETSALLTSA-EIPDTTSEDGGLPTDHPAVWNHPVVDPHT 167 ++P P H S + + EIPD + DGG P VW+H V D HT Sbjct 111 AAGGEAPGAGSEPHPVPVELHNPSVTIAAPDEIPDQPAHDGGFGGHGPGVWDHSVADTHT 170 Query 168 VEPDHHGYDI 177 VE DHHG+ + Sbjct 171 VEDDHHGFGL 180 >gi|118470928|ref|YP_885101.1| hypothetical protein MSMEG_0693 [Mycobacterium smegmatis str. MC2 155] gi|118172215|gb|ABK73111.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=183 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/189 (44%), Positives = 100/189 (53%), Gaps = 30/189 (15%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +AN+LLDFV+SLVRDPEAAARYAA+P ++IA+A L VT DV++LIPVVS+SLS+ Sbjct 10 MANTLLDFVMSLVRDPEAAARYAADPAQAIADADLNGVTSVDVDNLIPVVSESLSVGAAT 69 Query 61 GAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHGAVGSVLNQPTPPGPGVTPTD 120 G A NVWASGAATAA DAF H V G+ G V++ P D Sbjct 70 GGLDAYGAEPADNVWASGAATAAFDAFGDH----VPFDTGSGGQVIH---------APAD 116 Query 121 PRPFRAGPHETSALLTSAEIPDT--------TSEDGGLPTDHPAVWNHPVVDPHTVEPDH 172 P P A A SA P+ ED TD W PV+ H PD Sbjct 117 PEPAGADALSGPAEAVSATTPEIDPPVVEPLQVEDPVFGTD----WGQPVIPEH---PDM 169 Query 173 --HGYDIHG 179 HG D+ G Sbjct 170 GDHGDDLSG 178 >gi|169631368|ref|YP_001705017.1| hypothetical protein MAB_4290c [Mycobacterium abscessus ATCC 19977] gi|169243335|emb|CAM64363.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=198 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/92 (56%), Positives = 70/92 (77%), Gaps = 7/92 (7%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSL-SMSE- 58 + N+LLDFV++LVRD + AA+YAANPER IA+AHL V +DV++LIPVVS+S+ S+S+ Sbjct 1 MGNNLLDFVMALVRDQDMAAQYAANPERVIADAHLDGVQPSDVSALIPVVSESMPSISQL 60 Query 59 ---PIGAAGGAHAG-DRGNVWASGAATAALDA 86 P+ A+G AHA N+WASGAA +A D+ Sbjct 61 AAHPV-ASGLAHATIPADNIWASGAAVSAFDS 91 >gi|120401638|ref|YP_951467.1| hypothetical protein Mvan_0622 [Mycobacterium vanbaalenii PYR-1] gi|119954456|gb|ABM11461.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=171 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/78 (61%), Positives = 60/78 (77%), Gaps = 0/78 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +AN+LLDFV+SLVRDP+AAARYAA+P +++A+A+L DVT ADV +LIPVV++SLSM P Sbjct 1 MANALLDFVMSLVRDPDAAARYAADPAQALADANLVDVTSADVQNLIPVVAESLSMVAPA 60 Query 61 GAAGGAHAGDRGNVWASG 78 GNVWASG Sbjct 61 HGLDALSVEPVGNVWASG 78 >gi|325673801|ref|ZP_08153491.1| hypothetical protein HMPREF0724_11273 [Rhodococcus equi ATCC 33707] gi|325555066|gb|EGD24738.1| hypothetical protein HMPREF0724_11273 [Rhodococcus equi ATCC 33707] Length=823 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/51 (50%), Positives = 39/51 (77%), Gaps = 0/51 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDS 53 N++LDF++ L+RD EAAA Y ANP+ S+A A L D+ AD+ ++ P+V++S Sbjct 4 NAVLDFILRLLRDEEAAAAYCANPQASLAAAGLGDLCHADIAAVAPMVAES 54 >gi|312141358|ref|YP_004008694.1| hypothetical protein REQ_40380 [Rhodococcus equi 103S] gi|311890697|emb|CBH50016.1| hypothetical protein REQ_40380 [Rhodococcus equi 103S] Length=827 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/51 (50%), Positives = 39/51 (77%), Gaps = 0/51 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDS 53 N++LDF++ L+RD EAAA Y ANP+ S+A A L D+ AD+ ++ P+V++S Sbjct 4 NAVLDFILRLLRDEEAAAAYCANPQASLAAAGLGDLCHADIAAVAPMVAES 54 >gi|145220879|ref|YP_001131557.1| hypothetical protein Mflv_0275 [Mycobacterium gilvum PYR-GCK] gi|315442165|ref|YP_004075044.1| hypothetical protein Mspyr1_05000 [Mycobacterium sp. Spyr1] gi|145213365|gb|ABP42769.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315260468|gb|ADT97209.1| hypothetical protein Mspyr1_05000 [Mycobacterium sp. Spyr1] Length=171 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/78 (59%), Positives = 59/78 (76%), Gaps = 0/78 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMSEPI 60 +ANSLLDFV++LVRDP+AAARYAA+P ++IA+A L VT DV +LIPVV++SLSMS P Sbjct 1 MANSLLDFVMALVRDPDAAARYAADPAQAIADADLGSVTSTDVQNLIPVVAESLSMSVPA 60 Query 61 GAAGGAHAGDRGNVWASG 78 A + NVWA+G Sbjct 61 HGLDAFGAEPQANVWATG 78 >gi|108797425|ref|YP_637622.1| hypothetical protein Mmcs_0445 [Mycobacterium sp. MCS] gi|119866509|ref|YP_936461.1| hypothetical protein Mkms_0455 [Mycobacterium sp. KMS] gi|108767844|gb|ABG06566.1| hypothetical protein Mmcs_0445 [Mycobacterium sp. MCS] gi|119692598|gb|ABL89671.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=174 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/84 (58%), Positives = 62/84 (74%), Gaps = 12/84 (14%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMS--- 57 +ANSLLDFV+SLVRDP+AAARYAA+P +IA+A LTDVT DV++LIPVV++S+ M+ Sbjct 1 MANSLLDFVMSLVRDPDAAARYAADPAAAIADAQLTDVTSVDVDNLIPVVTESMPMAAAS 60 Query 58 ---EPIGAAGGAHAGDRGNVWASG 78 +P GA GNVW+SG Sbjct 61 TGLDPFGAEAA------GNVWSSG 78 >gi|126433044|ref|YP_001068735.1| hypothetical protein Mjls_0432 [Mycobacterium sp. JLS] gi|126232844|gb|ABN96244.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=174 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/84 (58%), Positives = 62/84 (74%), Gaps = 12/84 (14%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLSMS--- 57 +ANSLLDFV+SLVRDP+AAARYAA+P +IA+A LTDVT DV++LIPVV++S+ M+ Sbjct 1 MANSLLDFVMSLVRDPDAAARYAADPAAAIADAQLTDVTSVDVDNLIPVVTESMPMAAAS 60 Query 58 ---EPIGAAGGAHAGDRGNVWASG 78 +P GA GNVW+SG Sbjct 61 TGLDPFGAEAA------GNVWSSG 78 >gi|111022452|ref|YP_705424.1| hypothetical protein RHA1_ro05486 [Rhodococcus jostii RHA1] gi|110821982|gb|ABG97266.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=1167 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/51 (46%), Positives = 37/51 (73%), Gaps = 0/51 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDS 53 N++LDF++ L+RD +AAA Y ANP ++ A L V+ AD+ S+ P+V++S Sbjct 54 NAVLDFILGLLRDEQAAAAYCANPTEALCAAGLQGVSHADIVSVAPLVAES 104 >gi|169631362|ref|YP_001705011.1| hypothetical protein MAB_4284c [Mycobacterium abscessus ATCC 19977] gi|169243329|emb|CAM64357.1| Hypothetical protein MAB_4284c [Mycobacterium abscessus] Length=687 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/52 (45%), Positives = 40/52 (77%), Gaps = 0/52 (0%) Query 4 SLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDSLS 55 S++DF+++L RDP AA Y A+PE ++A A L+ V+ A V +++PVV++S++ Sbjct 2 SIIDFILNLFRDPVEAASYVADPEAALANAGLSAVSAAQVGAVMPVVAESVA 53 >gi|226304833|ref|YP_002764791.1| hypothetical protein RER_13440 [Rhodococcus erythropolis PR4] gi|226183948|dbj|BAH32052.1| hypothetical protein RER_13440 [Rhodococcus erythropolis PR4] Length=761 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/51 (46%), Positives = 38/51 (75%), Gaps = 0/51 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDS 53 N++L+F++ L+RD EAAA Y ANP ++ A L DV+ AD+ ++ P+V++S Sbjct 4 NAVLEFILGLLRDDEAAANYCANPTAALNAAGLCDVSPADIVAVAPLVAES 54 >gi|229492004|ref|ZP_04385820.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229321089|gb|EEN86894.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=396 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/51 (46%), Positives = 38/51 (75%), Gaps = 0/51 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDS 53 N++L+F++ L+RD EAAA Y ANP ++ A L DV+ AD+ ++ P+V++S Sbjct 4 NAVLEFILGLLRDDEAAANYCANPTAALDAAGLCDVSPADIVAVAPLVAES 54 >gi|300783413|ref|YP_003763704.1| hypothetical protein AMED_1489 [Amycolatopsis mediterranei U32] gi|299792927|gb|ADJ43302.1| hypothetical protein AMED_1489 [Amycolatopsis mediterranei U32] gi|340524799|gb|AEK40004.1| hypothetical protein RAM_07560 [Amycolatopsis mediterranei S699] Length=341 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/49 (43%), Positives = 33/49 (68%), Gaps = 0/49 (0%) Query 4 SLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSD 52 +L DF ++L+ DP A A + +P+ +A A L DV+ ADV+ +IP+V D Sbjct 6 TLHDFALNLLNDPTALAAFGTDPQGVLAAAGLGDVSAADVHEVIPLVLD 54 >gi|343928325|ref|ZP_08767776.1| hypothetical protein GOALK_114_00020 [Gordonia alkanivorans NBRC 16433] gi|343761733|dbj|GAA14702.1| hypothetical protein GOALK_114_00020 [Gordonia alkanivorans NBRC 16433] Length=1024 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 0/50 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSD 52 N++LDF++ L+RD +A Y +P+ +I A LT +T A +++ P+V+D Sbjct 4 NAVLDFILGLLRDEDAFNSYCGDPQAAIDRAGLTGITPAHISAAAPLVAD 53 >gi|256374710|ref|YP_003098370.1| hypothetical protein Amir_0557 [Actinosynnema mirum DSM 43827] gi|255919013|gb|ACU34524.1| hypothetical protein Amir_0557 [Actinosynnema mirum DSM 43827] Length=285 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 0/50 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSD 52 ++L DFV+ L+ +P A A + + E +A A L+DVT DV +IP+V D Sbjct 6 DTLHDFVLDLLSNPSALAAFQVDAEGCLAAAGLSDVTALDVQEVIPLVLD 55 >gi|302524781|ref|ZP_07277123.1| predicted protein [Streptomyces sp. AA4] gi|302433676|gb|EFL05492.1| predicted protein [Streptomyces sp. AA4] Length=520 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 0/50 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSD 52 +L DF +SL++DP A A + +P+ ++A A L D++ ADVN + P+V D Sbjct 36 QTLHDFTLSLLQDPSALAAFGQDPQAALAAAGLGDISAADVNEVAPLVLD 85 >gi|302529482|ref|ZP_07281824.1| predicted protein [Streptomyces sp. AA4] gi|302438377|gb|EFL10193.1| predicted protein [Streptomyces sp. AA4] Length=487 Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust. Identities = 17/51 (34%), Positives = 33/51 (65%), Gaps = 0/51 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDS 53 +L +F ++L+ DP++ A Y A+P+ + A L ++ +DV ++P+V DS Sbjct 53 QTLHEFALNLLNDPQSLAEYKADPQGVLNGAGLGELNPSDVQDIMPLVMDS 103 >gi|296164183|ref|ZP_06846784.1| isoniazid inducible protein inib [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900465|gb|EFG79870.1| isoniazid inducible protein inib [Mycobacterium parascrofulaceum ATCC BAA-614] Length=139 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/44 (39%), Positives = 33/44 (75%), Gaps = 0/44 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSL 46 +SL+D++++L R +AA +AA+P++++ EA DV+ A V+S+ Sbjct 23 SSLIDYILNLFRSEDAARAFAASPQQALNEAGFADVSPAQVSSV 66 >gi|331700294|ref|YP_004336533.1| hypothetical protein Psed_6592 [Pseudonocardia dioxanivorans CB1190] gi|326954983|gb|AEA28680.1| hypothetical protein Psed_6592 [Pseudonocardia dioxanivorans CB1190] Length=290 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 0/50 (0%) Query 4 SLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSDS 53 SLLDF++ L+ D + + A+PE ++ +LTD++ DV + + DS Sbjct 6 SLLDFLLRLINDDDLRQEFNADPEDTLEAYNLTDLSAQDVYDALVLAQDS 55 >gi|220913826|ref|YP_002489135.1| hypothetical protein Achl_3085 [Arthrobacter chlorophenolicus A6] gi|219860704|gb|ACL41046.1| hypothetical protein Achl_3085 [Arthrobacter chlorophenolicus A6] Length=389 Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/52 (41%), Positives = 33/52 (64%), Gaps = 0/52 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSD 52 +AN L+ F++SL D +AA + +PER + + L V ADV++ +PVV D Sbjct 3 LANDLVQFLMSLFGDRQAAQEFLDDPERVLEDHGLGGVCSADVDAAMPVVLD 54 >gi|325964550|ref|YP_004242456.1| hypothetical protein Asphe3_32140 [Arthrobacter phenanthrenivorans Sphe3] gi|323470637|gb|ADX74322.1| hypothetical protein Asphe3_32140 [Arthrobacter phenanthrenivorans Sphe3] Length=383 Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/52 (41%), Positives = 33/52 (64%), Gaps = 0/52 (0%) Query 1 VANSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNSLIPVVSD 52 +AN L+ F++ L D +AA + +PE+ + E L DV ADV++ +PVV D Sbjct 3 LANDLVQFLMHLFGDRQAAQDFLDDPEKVLDEHGLGDVCSADVDAAMPVVLD 54 >gi|183980640|ref|YP_001848931.1| membrane protein, IniB [Mycobacterium marinum M] gi|183173966|gb|ACC39076.1| conserved hypothetical membrane protein, IniB [Mycobacterium marinum M] Length=999 Score = 37.7 bits (86), Expect = 0.71, Method: Compositional matrix adjust. Identities = 19/63 (31%), Positives = 38/63 (61%), Gaps = 6/63 (9%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNS----LIPVVSDSLSMSE 58 SL+D+++SL R +AA + A+P +++ A L +V+ +++S +P + +L + Sbjct 4 TSLVDYILSLFRSEDAARSFVASPGQAMTNAGLVNVSPVEISSAAANALPFL--NLGAGD 61 Query 59 PIG 61 PIG Sbjct 62 PIG 64 >gi|120401639|ref|YP_951468.1| hypothetical protein Mvan_0623 [Mycobacterium vanbaalenii PYR-1] gi|119954457|gb|ABM11462.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=349 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/39 (39%), Positives = 27/39 (70%), Gaps = 0/39 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRA 41 N+L+DF++ L R P +AA + +P+ ++ +A L +VT A Sbjct 2 NTLIDFILDLFRSPASAASFVMDPDGALRDAGLPNVTAA 40 >gi|145220878|ref|YP_001131556.1| hypothetical protein Mflv_0274 [Mycobacterium gilvum PYR-GCK] gi|315442166|ref|YP_004075045.1| hypothetical protein Mspyr1_05010 [Mycobacterium sp. Spyr1] gi|145213364|gb|ABP42768.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315260469|gb|ADT97210.1| hypothetical protein Mspyr1_05010 [Mycobacterium sp. Spyr1] Length=338 Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/39 (39%), Positives = 26/39 (67%), Gaps = 0/39 (0%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRA 41 N+L+DF++ L R P AA + +P+ ++ +A L +VT A Sbjct 2 NTLIDFILDLFRSPAAAQSFVIDPDGALRDAGLPNVTAA 40 >gi|118616399|ref|YP_904731.1| membrane protein, IniB [Mycobacterium ulcerans Agy99] gi|118568509|gb|ABL03260.1| conserved hypothetical membrane protein, IniB [Mycobacterium ulcerans Agy99] Length=955 Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 6/63 (9%) Query 3 NSLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADVNS----LIPVVSDSLSMSE 58 SL+D+++SL R +AA + A+ +++ A L +V+ +++S +P + +L + Sbjct 2 TSLVDYILSLFRSEDAARSFVASSGQAMTNAGLVNVSPVEISSAAANALPFL--NLGAGD 59 Query 59 PIG 61 PIG Sbjct 60 PIG 62 >gi|119866510|ref|YP_936462.1| hypothetical protein Mkms_0456 [Mycobacterium sp. KMS] gi|119692599|gb|ABL89672.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=406 Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 27/40 (68%), Gaps = 0/40 (0%) Query 4 SLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRADV 43 +++DF++ L R P AAA + +P+ ++ +A L +VT A + Sbjct 54 NIIDFILDLFRSPAAAASFVVDPDGALRDAGLPNVTAAQL 93 >gi|108797426|ref|YP_637623.1| hypothetical protein Mmcs_0446 [Mycobacterium sp. MCS] gi|108767845|gb|ABG06567.1| hypothetical protein Mmcs_0446 [Mycobacterium sp. MCS] Length=354 Score = 34.7 bits (78), Expect = 6.4, Method: Compositional matrix adjust. Identities = 14/38 (37%), Positives = 26/38 (69%), Gaps = 0/38 (0%) Query 4 SLLDFVISLVRDPEAAARYAANPERSIAEAHLTDVTRA 41 +++DF++ L R P AAA + +P+ ++ +A L +VT A Sbjct 2 NIIDFILDLFRSPAAAASFVVDPDGALRDAGLPNVTAA 39 >gi|332832881|ref|XP_520248.3| PREDICTED: steroidogenic factor 1 [Pan troglodytes] Length=652 Score = 34.3 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 29/84 (35%), Positives = 36/84 (43%), Gaps = 3/84 (3%) Query 49 VVSDSLSMSEPIGAAGGAHAGDRGNVWASGAATAALDAFAPHADAGVVQQHG-AVGSVLN 107 V+ SL EP G A G AG G+ A A A P A G A+ S Sbjct 330 VLPPSLHAPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGRAIKSEYP 389 Query 108 QP--TPPGPGVTPTDPRPFRAGPH 129 +P +PP PG+ P PF GP+ Sbjct 390 EPYASPPQPGLPYGYPEPFSGGPN 413 Lambda K H 0.312 0.131 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 158760884352 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40