BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0344c Length=186 Score E Sequences producing significant alignments: (Bits) Value gi|15607485|ref|NP_214858.1| lipoprotein LpqJ [Mycobacterium tub... 372 9e-102 gi|340625375|ref|YP_004743827.1| putative lipoprotein LPQJ [Myco... 369 8e-101 gi|167968483|ref|ZP_02550760.1| lipoprotein lpqJ [Mycobacterium ... 357 6e-97 gi|296167801|ref|ZP_06849987.1| LpqJ protein [Mycobacterium para... 280 6e-74 gi|289568255|ref|ZP_06448482.1| lipoprotein lpqJ [Mycobacterium ... 271 5e-71 gi|342859161|ref|ZP_08715815.1| LpqJ [Mycobacterium colombiense ... 256 1e-66 gi|240171633|ref|ZP_04750292.1| lipoprotein, LpqJ [Mycobacterium... 252 1e-65 gi|41409935|ref|NP_962771.1| LpqJ [Mycobacterium avium subsp. pa... 252 2e-65 gi|118465012|ref|YP_883937.1| LpqJ protein [Mycobacterium avium ... 251 3e-65 gi|336460276|gb|EGO39178.1| hypothetical protein MAPs_42230 [Myc... 251 5e-65 gi|118616405|ref|YP_904737.1| lipoprotein, LpqJ [Mycobacterium u... 249 1e-64 gi|183980646|ref|YP_001848937.1| lipoprotein, LpqJ [Mycobacteriu... 244 4e-63 gi|254820188|ref|ZP_05225189.1| LpqJ [Mycobacterium intracellula... 243 1e-62 gi|333988974|ref|YP_004521588.1| hypothetical protein JDM601_033... 230 7e-59 gi|323721253|gb|EGB30311.1| lipoprotein lpqJ [Mycobacterium tube... 202 2e-50 gi|118471374|ref|YP_885111.1| LpqJ protein [Mycobacterium smegma... 191 6e-47 gi|145220868|ref|YP_001131546.1| putative lipoprotein LpqJ [Myco... 182 2e-44 gi|315442177|ref|YP_004075056.1| hypothetical protein Mspyr1_051... 181 3e-44 gi|108797440|ref|YP_637637.1| putative lipoprotein LpqJ [Mycobac... 177 8e-43 gi|120401647|ref|YP_951476.1| putative lipoprotein LpqJ [Mycobac... 160 8e-38 gi|296139175|ref|YP_003646418.1| lipoprotein [Tsukamurella pauro... 125 3e-27 gi|315444377|ref|YP_004077256.1| hypothetical protein Mspyr1_279... 105 3e-21 gi|145224041|ref|YP_001134719.1| hypothetical protein Mflv_3456 ... 105 4e-21 gi|289748827|ref|ZP_06508205.1| LOW QUALITY PROTEIN: lipoprotein... 97.1 1e-18 gi|120404191|ref|YP_954020.1| LpqJ [Mycobacterium vanbaalenii PY... 95.1 4e-18 gi|169628915|ref|YP_001702564.1| bacteriophage protein [Mycobact... 82.4 3e-14 gi|29566147|ref|NP_817716.1| gp38 [Mycobacterium phage Che9c] >g... 82.4 3e-14 gi|333991464|ref|YP_004524078.1| lipoprotein LpqJ [Mycobacterium... 67.4 1e-09 gi|333991461|ref|YP_004524075.1| von Willebrand factor A [Mycoba... 60.8 8e-08 gi|296141854|ref|YP_003649097.1| lipoprotein LpqJ [Tsukamurella ... 52.4 3e-05 >gi|15607485|ref|NP_214858.1| lipoprotein LpqJ [Mycobacterium tuberculosis H37Rv] gi|15839730|ref|NP_334767.1| putative lipoprotein [Mycobacterium tuberculosis CDC1551] gi|31791522|ref|NP_854015.1| lipoprotein LpqJ [Mycobacterium bovis AF2122/97] 68 more sequence titles Length=186 Score = 372 bits (956), Expect = 9e-102, Method: Compositional matrix adjust. Identities = 185/186 (99%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 VRLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT 60 +RLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT Sbjct 1 MRLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT 60 Query 61 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHA 120 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHA Sbjct 61 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHA 120 Query 121 NGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSI 180 NGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSI Sbjct 121 NGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSI 180 Query 181 EKVDTF 186 EKVDTF Sbjct 181 EKVDTF 186 >gi|340625375|ref|YP_004743827.1| putative lipoprotein LPQJ [Mycobacterium canettii CIPT 140010059] gi|340003565|emb|CCC42686.1| putative lipoprotein LPQJ [Mycobacterium canettii CIPT 140010059] Length=186 Score = 369 bits (948), Expect = 8e-101, Method: Compositional matrix adjust. Identities = 183/186 (99%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 VRLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT 60 +RLSLIARGMAALLAATA+VAGC+TTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT Sbjct 1 MRLSLIARGMAALLAATAVVAGCSTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT 60 Query 61 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHA 120 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHA Sbjct 61 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHA 120 Query 121 NGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSI 180 NGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSI Sbjct 121 NGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSI 180 Query 181 EKVDTF 186 EKVDTF Sbjct 181 EKVDTF 186 >gi|167968483|ref|ZP_02550760.1| lipoprotein lpqJ [Mycobacterium tuberculosis H37Ra] gi|254549287|ref|ZP_05139734.1| lipoprotein lpqJ [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297729804|ref|ZP_06958922.1| lipoprotein lpqJ [Mycobacterium tuberculosis KZN R506] Length=177 Score = 357 bits (915), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 177/177 (100%), Positives = 177/177 (100%), Gaps = 0/177 (0%) Query 10 MAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPT 69 MAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPT Sbjct 1 MAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPT 60 Query 70 APAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGG 129 APAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGG Sbjct 61 APAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGG 120 Query 130 SVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 SVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF Sbjct 121 SVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 177 >gi|296167801|ref|ZP_06849987.1| LpqJ protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897031|gb|EFG76651.1| LpqJ protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=197 Score = 280 bits (717), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 134/180 (75%), Positives = 155/180 (87%), Gaps = 3/180 (1%) Query 10 MAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTA---PTLPTTPV 66 +A +L + AL+ C+TTI GRPVA+PG+GP EPTFPTPRPT +PPG TA P LPTTP Sbjct 18 IAPVLVSPALIDACSTTIAGRPVAAPGAGPVEPTFPTPRPTASPPGPTASPAPGLPTTPA 77 Query 67 SPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHIT 126 +PTAPAGAIPLPPD NGYVFIETKSG TRCQINRD+VGCEAPFTNSP++DGEH NG+ + Sbjct 78 NPTAPAGAIPLPPDENGYVFIETKSGSTRCQINRDTVGCEAPFTNSPMQDGEHTNGVSVD 137 Query 127 AGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 + G VQWVLGNLGAIPTV IDY+TY A GWTI+AT DGTRFTN+RTGHGMFVS++KV+TF Sbjct 138 SAGKVQWVLGNLGAIPTVQIDYKTYNAAGWTINATADGTRFTNDRTGHGMFVSLDKVNTF 197 >gi|289568255|ref|ZP_06448482.1| lipoprotein lpqJ [Mycobacterium tuberculosis T17] gi|289542008|gb|EFD45657.1| lipoprotein lpqJ [Mycobacterium tuberculosis T17] Length=131 Score = 271 bits (692), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%) Query 56 TTAPTLPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLR 115 TTAPTLPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLR Sbjct 1 TTAPTLPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLR 60 Query 116 DGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHG 175 DGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHG Sbjct 61 DGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHG 120 Query 176 MFVSIEKVDTF 186 MFVSIEKVDTF Sbjct 121 MFVSIEKVDTF 131 >gi|342859161|ref|ZP_08715815.1| LpqJ [Mycobacterium colombiense CECT 3035] gi|342133402|gb|EGT86605.1| LpqJ [Mycobacterium colombiense CECT 3035] Length=195 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/178 (71%), Positives = 144/178 (81%), Gaps = 1/178 (0%) Query 10 MAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPV-SP 68 + ALL + LV+GC++ I GRPVASPG+GPTEP+FPTPR T P+ +P Sbjct 18 LVALLGGSELVSGCSSIIGGRPVASPGAGPTEPSFPTPRSTPPSATAAPAPGPSAAPSNP 77 Query 69 TAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAG 128 T PAGAIPLPPD NGYVFIETKSG+TRCQIN+D+VGCEAPFTNSPL+DGEHANG+ I G Sbjct 78 TNPAGAIPLPPDQNGYVFIETKSGVTRCQINKDTVGCEAPFTNSPLQDGEHANGVSINTG 137 Query 129 GSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 G VQWVLGNLGAIPTV+IDY+TY AQGWTI A DGTRFTN++T HGMFVS+EKV TF Sbjct 138 GKVQWVLGNLGAIPTVTIDYKTYAAQGWTIIANADGTRFTNDQTKHGMFVSVEKVTTF 195 >gi|240171633|ref|ZP_04750292.1| lipoprotein, LpqJ [Mycobacterium kansasii ATCC 12478] Length=182 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/164 (77%), Positives = 145/164 (89%), Gaps = 1/164 (0%) Query 23 CNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPTAPAGAIPLPPDSN 82 C++TIDGRP+A PG+GP EP+FPT RP+T+PP + LP T SPT PAGAIPLPPD N Sbjct 20 CDSTIDGRPIAGPGAGPIEPSFPTSRPSTSPP-SGTAPLPPTTPSPTTPAGAIPLPPDQN 78 Query 83 GYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLGAIP 142 GYVFIETKSG TRCQIN+DSVGCEAPFTNSP++DGEHANG+HITA G+VQWVLGNLGAIP Sbjct 79 GYVFIETKSGQTRCQINKDSVGCEAPFTNSPIKDGEHANGVHITAAGTVQWVLGNLGAIP 138 Query 143 TVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 TV+IDY+TY+AQGWTI +T DGTRF NN TGHGMFVSI++V+TF Sbjct 139 TVTIDYKTYDAQGWTITSTADGTRFQNNSTGHGMFVSIDRVNTF 182 >gi|41409935|ref|NP_962771.1| LpqJ [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398768|gb|AAS06387.1| LpqJ [Mycobacterium avium subsp. paratuberculosis K-10] Length=200 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 135/194 (70%), Positives = 149/194 (77%), Gaps = 8/194 (4%) Query 1 VRLSLIAR----GMAALL----AATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTA 52 VRLS AR G A LL LV+GC+T I GRPVASPG+GPTEP+FPTPR T Sbjct 7 VRLSENARRSLAGGALLLVVLPGGAGLVSGCSTVIGGRPVASPGAGPTEPSFPTPRSTPP 66 Query 53 PPGTTAPTLPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNS 112 P SP+APAGAIPLPPD NGYV+IETKSG TRCQIN+D+VGCEAPFTNS Sbjct 67 SATAAPAPTALPPPSPSAPAGAIPLPPDQNGYVYIETKSGSTRCQINKDTVGCEAPFTNS 126 Query 113 PLRDGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRT 172 PL+DGEHANG+ I AGG VQWVLGNLGAIPTV +DYRTY AQGWTI A DGTRFTN++T Sbjct 127 PLQDGEHANGVSINAGGKVQWVLGNLGAIPTVKLDYRTYSAQGWTIVANADGTRFTNDQT 186 Query 173 GHGMFVSIEKVDTF 186 HGMFVSIEKV+TF Sbjct 187 KHGMFVSIEKVNTF 200 >gi|118465012|ref|YP_883937.1| LpqJ protein [Mycobacterium avium 104] gi|254777246|ref|ZP_05218762.1| LpqJ [Mycobacterium avium subsp. avium ATCC 25291] gi|118166299|gb|ABK67196.1| LpqJ protein [Mycobacterium avium 104] Length=194 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 135/194 (70%), Positives = 149/194 (77%), Gaps = 8/194 (4%) Query 1 VRLSLIAR----GMAALLAAT----ALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTA 52 +RLS AR G A LL LV+GC+T I GRPVASPG+GPTEP+FPTPR T Sbjct 1 MRLSENARRSLAGGALLLVVLPGGGGLVSGCSTVIGGRPVASPGAGPTEPSFPTPRSTPP 60 Query 53 PPGTTAPTLPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNS 112 P SP+APAGAIPLPPD NGYVFIETKSG TRCQIN+D+VGCEAPFTNS Sbjct 61 SATAAPAPTALPPPSPSAPAGAIPLPPDQNGYVFIETKSGSTRCQINKDTVGCEAPFTNS 120 Query 113 PLRDGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRT 172 PL+DGEHANG+ I AGG VQWVLGNLGAIPTV +DYRTY AQGWTI A DGTRFTN++T Sbjct 121 PLQDGEHANGVSINAGGKVQWVLGNLGAIPTVKLDYRTYSAQGWTIVANADGTRFTNDQT 180 Query 173 GHGMFVSIEKVDTF 186 HGMFVSIEKV+TF Sbjct 181 KHGMFVSIEKVNTF 194 >gi|336460276|gb|EGO39178.1| hypothetical protein MAPs_42230 [Mycobacterium avium subsp. paratuberculosis S397] Length=194 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 134/194 (70%), Positives = 149/194 (77%), Gaps = 8/194 (4%) Query 1 VRLSLIAR----GMAALL----AATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTA 52 +RLS AR G A LL LV+GC+T I GRPVASPG+GPTEP+FPTPR T Sbjct 1 MRLSENARRSLAGGALLLVVLPGGAGLVSGCSTVIGGRPVASPGAGPTEPSFPTPRSTPP 60 Query 53 PPGTTAPTLPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNS 112 P SP+APAGAIPLPPD NGYV+IETKSG TRCQIN+D+VGCEAPFTNS Sbjct 61 SATAAPAPTALPPPSPSAPAGAIPLPPDQNGYVYIETKSGSTRCQINKDTVGCEAPFTNS 120 Query 113 PLRDGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRT 172 PL+DGEHANG+ I AGG VQWVLGNLGAIPTV +DYRTY AQGWTI A DGTRFTN++T Sbjct 121 PLQDGEHANGVSINAGGKVQWVLGNLGAIPTVKLDYRTYSAQGWTIVANADGTRFTNDQT 180 Query 173 GHGMFVSIEKVDTF 186 HGMFVSIEKV+TF Sbjct 181 KHGMFVSIEKVNTF 194 >gi|118616405|ref|YP_904737.1| lipoprotein, LpqJ [Mycobacterium ulcerans Agy99] gi|118568515|gb|ABL03266.1| conserved hypothetical lipoprotein, LpqJ [Mycobacterium ulcerans Agy99] Length=187 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 130/165 (79%), Positives = 152/165 (93%), Gaps = 0/165 (0%) Query 22 GCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPTAPAGAIPLPPDS 81 GC+ TIDG+P+A+PG+GPTEP+FPT RPTT+PP +T+P+ PT+P SPT+PAGAIPLPPD Sbjct 23 GCDATIDGKPIATPGAGPTEPSFPTRRPTTSPPTSTSPSQPTSPASPTSPAGAIPLPPDD 82 Query 82 NGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLGAI 141 NGYVFIETKSG TRCQIN DSVGCEAPFTNSP++DGEHANG+HIT+ G+VQWVLGNLGAI Sbjct 83 NGYVFIETKSGQTRCQINHDSVGCEAPFTNSPIKDGEHANGVHITSAGNVQWVLGNLGAI 142 Query 142 PTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 PTV+IDY+TY+AQGW I ATTDGTRF NN TGHGMFVSI+KV+TF Sbjct 143 PTVTIDYKTYDAQGWIITATTDGTRFQNNGTGHGMFVSIDKVETF 187 >gi|183980646|ref|YP_001848937.1| lipoprotein, LpqJ [Mycobacterium marinum M] gi|183173972|gb|ACC39082.1| conserved hypothetical lipoprotein, LpqJ [Mycobacterium marinum M] Length=189 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 126/167 (76%), Positives = 146/167 (88%), Gaps = 2/167 (1%) Query 22 GCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTP--VSPTAPAGAIPLPP 79 GC+ TIDG+P+A+PG+GPTEP+FPT RPTT+PP T+ + SPT+PAGAIPLPP Sbjct 23 GCDATIDGKPIATPGAGPTEPSFPTRRPTTSPPPPTSTSPSQPTSPASPTSPAGAIPLPP 82 Query 80 DSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLG 139 D NGYVFIETKSG TRCQIN DSVGCEAPFTNSP++DGEHANG+HIT+ G+VQWVLGNLG Sbjct 83 DDNGYVFIETKSGQTRCQINHDSVGCEAPFTNSPIKDGEHANGVHITSAGNVQWVLGNLG 142 Query 140 AIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 AIPTV+IDY+TY+AQGW I ATTDGTRF NN TGHGMFVSI+KV+TF Sbjct 143 AIPTVTIDYKTYDAQGWIITATTDGTRFQNNGTGHGMFVSIDKVETF 189 >gi|254820188|ref|ZP_05225189.1| LpqJ [Mycobacterium intracellulare ATCC 13950] Length=197 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 129/180 (72%), Positives = 149/180 (83%), Gaps = 3/180 (1%) Query 10 MAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVS-- 67 + AL A + LV+GC++ I GRPVASPG+G EP+FPTPR T +PP TA PT P + Sbjct 18 LVALFAGSGLVSGCSSVIGGRPVASPGAGAGEPSFPTPRSTPSPPSATAAPAPTAPAAPT 77 Query 68 -PTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHIT 126 PT PAGAIPLPPD NGYVFIETKSG+TRCQIN+D+VGCEAPFTNSPL+DGEHANG+ +T Sbjct 78 GPTNPAGAIPLPPDQNGYVFIETKSGVTRCQINKDTVGCEAPFTNSPLQDGEHANGVSVT 137 Query 127 AGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 GG VQWVLGNLGAIPTV IDY+TY AQGWTI A DGTRFTN++T HGMFVSI+KV+TF Sbjct 138 TGGKVQWVLGNLGAIPTVKIDYQTYAAQGWTIIANVDGTRFTNDQTKHGMFVSIDKVNTF 197 >gi|333988974|ref|YP_004521588.1| hypothetical protein JDM601_0334 [Mycobacterium sp. JDM601] gi|333484942|gb|AEF34334.1| lipoprotein LpqJ [Mycobacterium sp. JDM601] Length=201 Score = 230 bits (586), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 110/166 (67%), Positives = 131/166 (79%), Gaps = 1/166 (0%) Query 22 GCNTTIDGRPVASPG-SGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPTAPAGAIPLPPD 80 GC+TT+DG P A+PG SGP EP+ TPRPTTAPP T+ P P + +P P AI LPPD Sbjct 36 GCSTTVDGNPTAAPGGSGPPEPSLRTPRPTTAPPSTSTPAAPPSSSTPGKPGDAIALPPD 95 Query 81 SNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLGA 140 NGYVFIETKSG TRCQI+ V CEA FTNSPL+ GEHANG+ +++ G+VQWVLGNLG Sbjct 96 ENGYVFIETKSGRTRCQISTRQVDCEAEFTNSPLKGGEHANGVSVSSDGTVQWVLGNLGD 155 Query 141 IPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 IP V+IDY TY+A+GW IDA +GTRFTN+RTGHGMFVSI+ V+TF Sbjct 156 IPVVTIDYLTYQAEGWKIDADVEGTRFTNDRTGHGMFVSIDNVETF 201 >gi|323721253|gb|EGB30311.1| lipoprotein lpqJ [Mycobacterium tuberculosis CDC1551A] Length=94 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%) Query 93 MTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYE 152 MTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYE Sbjct 1 MTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLGAIPTVSIDYRTYE 60 Query 153 AQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 AQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF Sbjct 61 AQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 94 >gi|118471374|ref|YP_885111.1| LpqJ protein [Mycobacterium smegmatis str. MC2 155] gi|118172661|gb|ABK73557.1| LpqJ protein [Mycobacterium smegmatis str. MC2 155] Length=179 Score = 191 bits (484), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 92/177 (52%), Positives = 124/177 (71%), Gaps = 4/177 (2%) Query 10 MAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPT 69 + LL+ L+ GC++ I+G+PV + P EP FPTPRPT + P ++ P S Sbjct 7 LGCLLSVGGLLVGCHSAIEGKPVTKAIT-PIEPNFPTPRPTRSSPAPSSTV--AAPPSAK 63 Query 70 APAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGG 129 P GA PL P NGYVFIETKSG TRCQ+++ VGCE+ F N+P+ DG ANG+ ++A G Sbjct 64 PPTGATPLQPQ-NGYVFIETKSGRTRCQLSKQDVGCESDFANAPVVDGLPANGVQLSASG 122 Query 130 SVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 ++W++GNLGAIP V++DY+ Y A GWTIDA++DGTRFTN+ TGHGM V++E V F Sbjct 123 KMRWIVGNLGAIPAVTLDYKRYSALGWTIDASSDGTRFTNDGTGHGMVVAVEGVQVF 179 >gi|145220868|ref|YP_001131546.1| putative lipoprotein LpqJ [Mycobacterium gilvum PYR-GCK] gi|145213354|gb|ABP42758.1| putative lipoprotein LpqJ [Mycobacterium gilvum PYR-GCK] Length=182 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/186 (52%), Positives = 125/186 (68%), Gaps = 4/186 (2%) Query 1 VRLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT 60 +R L+A AA+LA+ ++AGC T IDG +P S TEP FPTPRP+ + + Sbjct 1 MRTRLMA---AAVLASATVLAGCQTVIDGTATRTPDSSFTEPEFPTPRPSRPTTAPPSTS 57 Query 61 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHA 120 PT + P G L P NGYVFI+TKSG TRCQ++ VGCE+ FT++P+ DG A Sbjct 58 APTPTPTRPRPPGGEVLRP-QNGYVFIQTKSGKTRCQLDEQEVGCESAFTDAPVIDGMPA 116 Query 121 NGIHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSI 180 NG+ ++A G + WV+GNLGAIP V++DYRTY A GWTI+AT GTRFTN+ TG GM V I Sbjct 117 NGVRLSADGELSWVVGNLGAIPAVTLDYRTYSALGWTIEATESGTRFTNDATGRGMVVRI 176 Query 181 EKVDTF 186 E V++F Sbjct 177 EGVESF 182 >gi|315442177|ref|YP_004075056.1| hypothetical protein Mspyr1_05120 [Mycobacterium sp. Spyr1] gi|315260480|gb|ADT97221.1| hypothetical protein Mspyr1_05120 [Mycobacterium sp. Spyr1] Length=177 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/176 (53%), Positives = 120/176 (69%), Gaps = 1/176 (0%) Query 11 AALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPTLPTTPVSPTA 70 AA+LA+ ++AGC T IDG +P S TEP FPTPRP+ + + PT + Sbjct 3 AAVLASATVLAGCQTVIDGTATRTPDSSFTEPEFPTPRPSRPTTAPPSTSAPTPTPTRPR 62 Query 71 PAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGS 130 P G L P NGYVFI+TKSG TRCQ++ VGCE+ FT++P+ DG ANG+ ++A G Sbjct 63 PPGGEVLRP-QNGYVFIQTKSGKTRCQLDEQEVGCESAFTDAPVIDGMPANGVRLSADGE 121 Query 131 VQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 + WV+GNLGAIP V++DYRTY A GWTI+AT GTRFTN+ TG GM V IE V++F Sbjct 122 LSWVVGNLGAIPAVTLDYRTYSALGWTIEATESGTRFTNDATGRGMVVRIEGVESF 177 >gi|108797440|ref|YP_637637.1| putative lipoprotein LpqJ [Mycobacterium sp. MCS] gi|119866525|ref|YP_936477.1| putative lipoprotein LpqJ [Mycobacterium sp. KMS] gi|126433059|ref|YP_001068750.1| putative lipoprotein LpqJ [Mycobacterium sp. JLS] gi|108767859|gb|ABG06581.1| putative lipoprotein LpqJ [Mycobacterium sp. MCS] gi|119692614|gb|ABL89687.1| putative lipoprotein LpqJ [Mycobacterium sp. KMS] gi|126232859|gb|ABN96259.1| putative lipoprotein LpqJ [Mycobacterium sp. JLS] Length=186 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 98/180 (55%), Positives = 121/180 (68%), Gaps = 3/180 (1%) Query 10 MAALLAATALVAGCNTTIDGRPVASPGS--GPTEPTFPTPRPT-TAPPGTTAPTLPTTPV 66 MA ++ L+ GC G V SP S PTEPT PTPRP+ T+ P TL P Sbjct 7 MAGVVTVATLLTGCQNDTSGTAVRSPDSLIEPTEPTVPTPRPSRTSTPAPPPRTLTPAPP 66 Query 67 SPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHIT 126 S +AP A + NGYVFI+TKSG TRCQ++ + VGCEA FT+SP G ANG+ ++ Sbjct 67 SASAPPSAAEVLAPQNGYVFIQTKSGKTRCQLSTEEVGCEAQFTDSPEVGGLPANGVRLS 126 Query 127 AGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 A G V+WVLGNLG IP V++DYR Y A GWTIDA++DGTRFTN+RT GMFVS+E+V TF Sbjct 127 ADGQVEWVLGNLGDIPAVTLDYRRYSAVGWTIDASSDGTRFTNDRTQRGMFVSVERVQTF 186 >gi|120401647|ref|YP_951476.1| putative lipoprotein LpqJ [Mycobacterium vanbaalenii PYR-1] gi|119954465|gb|ABM11470.1| putative lipoprotein LpqJ [Mycobacterium vanbaalenii PYR-1] Length=203 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 85/166 (52%), Positives = 113/166 (69%), Gaps = 6/166 (3%) Query 22 GCNTTIDGRPVASPGSGPTEPTFPTPRPT-TAPPGTTAPTLPTTPVSPTAPAGAIPLPPD 80 GC ++I+G +P S +EP FPTPRP+ T P+T P PAG + P Sbjct 43 GCQSSIEGTATRTPDSF-SEPDFPTPRPSRPTTAPPTTGPAPSTRTGP--PAGEVLAP-- 97 Query 81 SNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLRDGEHANGIHITAGGSVQWVLGNLGA 140 NGYVFI+T++G TRCQ++ VGCE+ FTN+P DG ANG+ ++A G + WVLGNLGA Sbjct 98 QNGYVFIQTRTGKTRCQLDEQEVGCESAFTNAPEIDGLPANGVRLSADGDLSWVLGNLGA 157 Query 141 IPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 IP V++DYRTY A GWTI+A +GTRFTN+ TG GM +S+E V++F Sbjct 158 IPAVTLDYRTYSAVGWTIEADENGTRFTNDGTGRGMVISVEGVESF 203 >gi|296139175|ref|YP_003646418.1| lipoprotein [Tsukamurella paurometabola DSM 20162] gi|296027309|gb|ADG78079.1| putative lipoprotein [Tsukamurella paurometabola DSM 20162] Length=175 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/168 (40%), Positives = 99/168 (59%), Gaps = 15/168 (8%) Query 22 GCNTTIDGRPVASPGSGPTEPTFPTPRPT-TAPPGTTAPTLPTTPVSPTAPAGAIPLPPD 80 GC++T+ G V PG+ TE P P+ TAPP + A ++P I +P + Sbjct 20 GCSSTVSGDAVPEPGTPVTETVTAAPTPSSTAPPSSRATSVP------------IAIPDN 67 Query 81 SNGYVFIETKSGMTRCQINRDSVGCEAPFTNS--PLRDGEHANGIHITAGGSVQWVLGNL 138 NGY F++TKSG RC+++ GC+ F G+ ANG+++ G++ +VLG++ Sbjct 68 GNGYTFMQTKSGKARCRVSTTGAGCQLEFDKPGPKTETGDRANGVNVGRDGTLTYVLGDI 127 Query 139 GAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 G + ++DY TY A+GWTI+A+ +GTRFTNN TGHGMFVS F Sbjct 128 GVVNPATLDYATYTARGWTIEASFEGTRFTNNGTGHGMFVSTTGARAF 175 >gi|315444377|ref|YP_004077256.1| hypothetical protein Mspyr1_27930 [Mycobacterium sp. Spyr1] gi|315262680|gb|ADT99421.1| hypothetical protein Mspyr1_27930 [Mycobacterium sp. Spyr1] Length=281 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/184 (40%), Positives = 100/184 (55%), Gaps = 8/184 (4%) Query 10 MAALLAATALVAGCNTTIDGRPVA--SPGSGPTEPTFPTPRPTTAPPGTTAPTL--PTTP 65 M+++L+ V + +D RP+A +P SG P R +PTL PT Sbjct 99 MSSMLSWQPSVYVAHAVVDDRPLAIWTP-SGEASDLEPLTRYGFTLAAYESPTLSRPTAE 157 Query 66 VSPTAPAGAIP-LPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLR-DGEH-ANG 122 + T P+G I +PP++ GYV ++T G T+C ++ VGCE TN DG +G Sbjct 158 LPATVPSGDIEVIPPNAYGYVVVQTAGGDTQCLVDTTYVGCETEGTNWQQHLDGSGPYHG 217 Query 123 IHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEK 182 + I A G+ WV GNLGA ++ RTY A GWTI ++ G RFTN+RTGHG VS K Sbjct 218 VRINADGTGSWVDGNLGAAAPQTLGDRTYRALGWTIVSSPAGMRFTNDRTGHGAIVSAAK 277 Query 183 VDTF 186 V TF Sbjct 278 VQTF 281 >gi|145224041|ref|YP_001134719.1| hypothetical protein Mflv_3456 [Mycobacterium gilvum PYR-GCK] gi|145216527|gb|ABP45931.1| hypothetical protein Mflv_3456 [Mycobacterium gilvum PYR-GCK] Length=281 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/184 (40%), Positives = 100/184 (55%), Gaps = 8/184 (4%) Query 10 MAALLAATALVAGCNTTIDGRPVA--SPGSGPTEPTFPTPRPTTAPPGTTAPTL--PTTP 65 M+++L+ V + +D RP+A +P SG P R +PTL PT Sbjct 99 MSSMLSWQPSVYVAHAVVDDRPLAIWTP-SGEASDLEPLTRYGFTLAAYESPTLSRPTAE 157 Query 66 VSPTAPAGAIP-LPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLR-DGEH-ANG 122 + T P+G I +PP++ GYV ++T G T+C ++ VGCE TN DG +G Sbjct 158 LPATVPSGDIEVIPPNAYGYVVVQTAGGDTQCLVDTTYVGCETEGTNWQQHLDGSGPYHG 217 Query 123 IHITAGGSVQWVLGNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEK 182 + I A G+ WV GNLGA ++ RTY A GWTI ++ G RFTN+RTGHG VS K Sbjct 218 VRINADGTGSWVDGNLGAAAPQTLGDRTYRALGWTIVSSPAGMRFTNDRTGHGAIVSAAK 277 Query 183 VDTF 186 V TF Sbjct 278 VQTF 281 >gi|289748827|ref|ZP_06508205.1| LOW QUALITY PROTEIN: lipoprotein lpqJ [Mycobacterium tuberculosis T92] gi|289689414|gb|EFD56843.1| LOW QUALITY PROTEIN: lipoprotein lpqJ [Mycobacterium tuberculosis T92] Length=186 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 94/97 (97%), Positives = 96/97 (99%), Gaps = 0/97 (0%) Query 1 VRLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT 60 +RLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT Sbjct 1 MRLSLIARGMAALLAATALVAGCNTTIDGRPVASPGSGPTEPTFPTPRPTTAPPGTTAPT 60 Query 61 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQ 97 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTR + Sbjct 61 LPTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRAR 97 >gi|120404191|ref|YP_954020.1| LpqJ [Mycobacterium vanbaalenii PYR-1] gi|119957009|gb|ABM14014.1| LpqJ [Mycobacterium vanbaalenii PYR-1] Length=183 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/171 (38%), Positives = 91/171 (54%), Gaps = 8/171 (4%) Query 23 CNTTIDGRPVA--SPGSGPTEPTFPTPRP--TTAPPGTTAPTLPTTPVSPTAPAGAIP-L 77 T +DGRP+A +P SG P + T A + + T V P+G I + Sbjct 14 AETVVDGRPLAIWTP-SGEAADLEPLKQFGFTVASYQSASFVRATADVPAALPSGDIETI 72 Query 78 PPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLR-DGEH-ANGIHITAGGSVQWVL 135 PP+ GYV ++T +G T+C + +GCE TN DG +G+ I G+ WV Sbjct 73 PPNEYGYVVVQTAAGDTQCIVEATFIGCETEGTNWQQHVDGSGPYHGVRINTDGTGSWVD 132 Query 136 GNLGAIPTVSIDYRTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 GNLGA+ ++ +TY A GWTI +T G RFTN++TGHG VS++ V F Sbjct 133 GNLGAVAPTTLGAKTYRALGWTIASTPAGMRFTNDKTGHGALVSVQNVQPF 183 >gi|169628915|ref|YP_001702564.1| bacteriophage protein [Mycobacterium abscessus ATCC 19977] gi|169240882|emb|CAM61910.1| Bacteriophage protein [Mycobacterium abscessus] Length=231 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/104 (42%), Positives = 65/104 (63%), Gaps = 2/104 (1%) Query 85 VFIETKSGMTRCQINRDSVGCEAPFT-NSPLRDGEHANGIHITAGGSVQWVLGNLGAIPT 143 V++ TKSG T CQ+ ++V C F +P+R G N + IT+GG + W +G+ G + T Sbjct 128 VYVSTKSGKTACQVTVNTVSCIVRFVGRTPIRYGVPTNVVMITSGGIMDWTVGDGGQLQT 187 Query 144 VSIDYRT-YEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDTF 186 +++Y T Y A GWTI T++GT FTN+ TG GM V+++ F Sbjct 188 HTLNYGTLYHALGWTITPTSEGTTFTNDATGRGMSVNVDGARAF 231 >gi|29566147|ref|NP_817716.1| gp38 [Mycobacterium phage Che9c] gi|29424872|gb|AAN12599.1| gp38 [Mycobacterium phage Che9c] Length=231 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/127 (41%), Positives = 70/127 (56%), Gaps = 4/127 (3%) Query 62 PTTPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTN-SPLRDGEHA 120 PT V +PA + P G VF+ T+SG T CQ++ V C F +P+ +G A Sbjct 107 PTKTVQSASPA--VVALPTRGGSVFVRTRSGKTVCQMSAGDVRCNVDFLRPTPILNGLPA 164 Query 121 NGIHITAGGSVQWVLGNLGAIPTVSIDY-RTYEAQGWTIDATTDGTRFTNNRTGHGMFVS 179 G+ TA G+ QW++G+ G + Y TY A GWTI T++GT F N+ TGHGM VS Sbjct 165 TGVMTTARGNWQWLVGDPGDPEYQILGYGTTYRALGWTITPTSEGTTFINDATGHGMTVS 224 Query 180 IEKVDTF 186 +E F Sbjct 225 VEGFTPF 231 >gi|333991464|ref|YP_004524078.1| lipoprotein LpqJ [Mycobacterium sp. JDM601] gi|333487432|gb|AEF36824.1| putative lipoprotein LpqJ [Mycobacterium sp. JDM601] Length=158 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/132 (38%), Positives = 68/132 (52%), Gaps = 19/132 (14%) Query 63 TTPVSPTAPAGAIPLP-PDSNGYVFIETKSGMTRCQINRD----------SVGCEAPFTN 111 TT +P A A+ LP PD + Y+ +SGM RCQI+ CE F+ Sbjct 26 TTAGAPPAVDSAVTLPDPDVDLYI----QSGM-RCQIHAGPHFEPYFHTTEAACEHRFSK 80 Query 112 SPLRDGEHANGIHITAGGSVQWVLGNLGA-IPTVSID-YRTYEAQGWTIDATTDGTRFTN 169 +P ++G A G+ + A G +W GN+G P V I+ Y GWTI DGTRFT+ Sbjct 81 APAKNGP-ATGVIVQANGHFEWAYGNMGEPRPKVVIEPGHIYRLAGWTIVTDADGTRFTD 139 Query 170 NRTGHGMFVSIE 181 + TG GM VS + Sbjct 140 DGTGKGMVVSAD 151 >gi|333991461|ref|YP_004524075.1| von Willebrand factor A [Mycobacterium sp. JDM601] gi|333487429|gb|AEF36821.1| von Willebrand factor type A [Mycobacterium sp. JDM601] Length=458 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/131 (40%), Positives = 64/131 (49%), Gaps = 19/131 (14%) Query 64 TPVSPTAPAGAIPLPPDSNGYVFIETKSGMTRCQINRDS---------VGCEAPFTNSPL 114 T S P I P NG V + T+SG+ RCQ+N + V CE+ P Sbjct 331 TGASAGVPNAVITFP--DNG-VDLFTQSGL-RCQVNVPNAVSGFAPPNVICESGAGWGPS 386 Query 115 RDGEHANGIHITAGGSVQWVLGNLGAI-PTVSID-YRTYEAQGWTIDATTDGTRFTNNRT 172 + NG+ T G W GNLG I VSI+ RTY GWT+ A DG RFT + T Sbjct 387 K----YNGVVTTKTGDWSWAEGNLGKIIDKVSIEPGRTYRVDGWTVVADGDGARFTYDDT 442 Query 173 GHGMFVSIEKV 183 G G+FVSI V Sbjct 443 GSGIFVSIADV 453 >gi|296141854|ref|YP_003649097.1| lipoprotein LpqJ [Tsukamurella paurometabola DSM 20162] gi|296029988|gb|ADG80758.1| putative lipoprotein LpqJ [Tsukamurella paurometabola DSM 20162] Length=172 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/121 (34%), Positives = 58/121 (48%), Gaps = 9/121 (7%) Query 70 APAGAIPLPPDSNGYVFIETKSGMTRCQINRDSVGCEAPFTNSPLR--DGEHANGIHITA 127 +P A+P P + V T+SG T C + + V C++ R GE A G + Sbjct 57 SPPTALPGGPGAASRVL--TQSGKTTCNVRAELVECQSTEFGKTYRAETGEPATGF-VYR 113 Query 128 GGSVQWVLGNLGAI-PTVSIDY-RTYEAQGWTIDATTDGTRFTNNRTGHGMFVSIEKVDT 185 G ++W GN+ P ++ Y TY A GWTI A + T FT R GHG+ V + + Sbjct 114 GSEIRWYYGNMAVTAPATTMRYGSTYTAYGWTIRADAEKTVFT--RDGHGVSVDVANTTS 171 Query 186 F 186 F Sbjct 172 F 172 Lambda K H 0.315 0.133 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 177363380150 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40