BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0347

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607488|ref|NP_214861.1|  hypothetical protein Rv0347 [Mycoba...   661    0.0   
gi|308231528|ref|ZP_07412778.2|  conserved membrane protein [Myco...   551    5e-155
gi|323721256|gb|EGB30314.1|  membrane protein [Mycobacterium tube...   542    3e-152
gi|289568258|ref|ZP_06448485.1|  LOW QUALITY PROTEIN: conserved m...   423    2e-116
gi|336120957|ref|YP_004575744.1|  hypothetical protein MLP_53270 ...   130    4e-28 
gi|339293846|gb|AEJ45957.1|  hypothetical protein CCDC5079_0767 [...   120    2e-25 
gi|15840242|ref|NP_335279.1|  hypothetical protein MT0852 [Mycoba...   120    3e-25 
gi|15607971|ref|NP_215346.1|  hypothetical protein Rv0831c [Mycob...   120    4e-25 
gi|289442234|ref|ZP_06431978.1|  conserved hypothetical protein [...   120    4e-25 
gi|240171876|ref|ZP_04750535.1|  hypothetical protein MkanA1_2135...   118    1e-24 
gi|54023545|ref|YP_117787.1|  hypothetical protein nfa15770 [Noca...   117    2e-24 
gi|183984817|ref|YP_001853108.1|  hypothetical protein MMAR_4849 ...   108    1e-21 
gi|289760960|ref|ZP_06520338.1|  conserved hypothetical protein [...   108    1e-21 
gi|240171632|ref|ZP_04750291.1|  hypothetical protein MkanA1_2011...  74.3    3e-11 
gi|336120556|ref|YP_004575342.1|  hypothetical protein MLP_49250 ...  55.8    1e-05 
gi|167566722|ref|ZP_02359638.1|  hypothetical protein BoklE_29451...  53.9    3e-05 
gi|220915153|ref|YP_002490457.1|  hypothetical protein A2cp1_0030...  53.1    6e-05 
gi|126179006|ref|YP_001046971.1|  hypothetical protein Memar_1056...  47.0    0.004 
gi|87306732|ref|ZP_01088879.1|  hypothetical protein DSM3645_1037...  46.6    0.005 
gi|219852641|ref|YP_002467073.1|  hypothetical protein Mpal_2051 ...  41.6    0.16  
gi|56478815|ref|YP_160404.1|  hypothetical protein ebA5936 [Aroma...  40.8    0.32  
gi|300113075|ref|YP_003759650.1|  hypothetical protein Nwat_0359 ...  40.0    0.45  


>gi|15607488|ref|NP_214861.1| hypothetical protein Rv0347 [Mycobacterium tuberculosis H37Rv]
 gi|15839733|ref|NP_334770.1| hypothetical protein MT0362 [Mycobacterium tuberculosis CDC1551]
 gi|31791525|ref|NP_854018.1| hypothetical protein Mb0355 [Mycobacterium bovis AF2122/97]
 53 more sequence titles
 Length=328

 Score =  661 bits (1705),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 327/328 (99%), Positives = 328/328 (100%), Gaps = 0/328 (0%)

Query  1    VPGARELTLRVERGALFRRRWAASAASSARAAIRRDPRRCALGTRPRWVSFLVIVLVIMN  60
            +PGARELTLRVERGALFRRRWAASAASSARAAIRRDPRRCALGTRPRWVSFLVIVLVIMN
Sbjct  1    MPGARELTLRVERGALFRRRWAASAASSARAAIRRDPRRCALGTRPRWVSFLVIVLVIMN  60

Query  61   VVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETG  120
            VVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETG
Sbjct  61   VVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETG  120

Query  121  EHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCI  180
            EHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCI
Sbjct  121  EHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCI  180

Query  181  RIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSL  240
            RIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSL
Sbjct  181  RIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSL  240

Query  241  TLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAER  300
            TLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAER
Sbjct  241  TLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAER  300

Query  301  LHTPIGPLFESLITSELRTKVLQQPGQE  328
            LHTPIGPLFESLITSELRTKVLQQPGQE
Sbjct  301  LHTPIGPLFESLITSELRTKVLQQPGQE  328


>gi|308231528|ref|ZP_07412778.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308369370|ref|ZP_07417524.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308370381|ref|ZP_07421296.2| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 19 more sequence titles
 Length=270

 Score =  551 bits (1420),  Expect = 5e-155, Method: Compositional matrix adjust.
 Identities = 270/270 (100%), Positives = 270/270 (100%), Gaps = 0/270 (0%)

Query  59   MNVVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLE  118
            MNVVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLE
Sbjct  1    MNVVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLE  60

Query  119  TGEHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDG  178
            TGEHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDG
Sbjct  61   TGEHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDG  120

Query  179  CIRIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD  238
            CIRIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD
Sbjct  121  CIRIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD  180

Query  239  SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA  298
            SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA
Sbjct  181  SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA  240

Query  299  ERLHTPIGPLFESLITSELRTKVLQQPGQE  328
            ERLHTPIGPLFESLITSELRTKVLQQPGQE
Sbjct  241  ERLHTPIGPLFESLITSELRTKVLQQPGQE  270


>gi|323721256|gb|EGB30314.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|339293402|gb|AEJ45513.1| hypothetical protein CCDC5079_0323 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297047|gb|AEJ49157.1| hypothetical protein CCDC5180_0320 [Mycobacterium tuberculosis 
CCDC5180]
Length=267

 Score =  542 bits (1397),  Expect = 3e-152, Method: Compositional matrix adjust.
 Identities = 266/267 (99%), Positives = 267/267 (100%), Gaps = 0/267 (0%)

Query  62   VTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETGE  121
            +TAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETGE
Sbjct  1    MTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETGE  60

Query  122  HTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIR  181
            HTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIR
Sbjct  61   HTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIR  120

Query  182  IGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSLT  241
            IGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSLT
Sbjct  121  IGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSLT  180

Query  242  LRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAERL  301
            LRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAERL
Sbjct  181  LRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAERL  240

Query  302  HTPIGPLFESLITSELRTKVLQQPGQE  328
            HTPIGPLFESLITSELRTKVLQQPGQE
Sbjct  241  HTPIGPLFESLITSELRTKVLQQPGQE  267


>gi|289568258|ref|ZP_06448485.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium 
tuberculosis T17]
 gi|289542011|gb|EFD45660.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium 
tuberculosis T17]
Length=211

 Score =  423 bits (1087),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 210/211 (99%), Positives = 211/211 (100%), Gaps = 0/211 (0%)

Query  1    VPGARELTLRVERGALFRRRWAASAASSARAAIRRDPRRCALGTRPRWVSFLVIVLVIMN  60
            +PGARELTLRVERGALFRRRWAASAASSARAAIRRDPRRCALGTRPRWVSFLVIVLVIMN
Sbjct  1    MPGARELTLRVERGALFRRRWAASAASSARAAIRRDPRRCALGTRPRWVSFLVIVLVIMN  60

Query  61   VVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETG  120
            VVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETG
Sbjct  61   VVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETG  120

Query  121  EHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCI  180
            EHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCI
Sbjct  121  EHTAHSQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCI  180

Query  181  RIGLRYINEIRASLAEPSGWAYWVAESLLGP  211
            RIGLRYINEIRASLAEPSGWAYWVAESLLGP
Sbjct  181  RIGLRYINEIRASLAEPSGWAYWVAESLLGP  211


>gi|336120957|ref|YP_004575744.1| hypothetical protein MLP_53270 [Microlunatus phosphovorus NM-1]
 gi|334688756|dbj|BAK38341.1| hypothetical protein MLP_53270 [Microlunatus phosphovorus NM-1]
Length=273

 Score =  130 bits (326),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 92/276 (34%), Positives = 136/276 (50%), Gaps = 14/276 (5%)

Query  59   MNVVTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLE  118
            M+ V     YP+ P+ L+ IE+RHP  EP     ++ +   +    P+  +     V ++
Sbjct  1    MSCVREREIYPSAPIVLMAIEVRHPLCEPLDRKQVTDMSARVKHLLPLPSEMNEVSVTVQ  60

Query  119  TGEHTAHSQKKLV-------ARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQ  171
             G      Q+++V       +RD+RTA++ RPD++ +E T+Y  ++  R ++  ++ AR 
Sbjct  61   AGSDGPPVQQQVVRSFPRWTSRDKRTALSVRPDSLVIETTNYGSYDRMRELLDIVLLARL  120

Query  172  DVAPVDGCIRIGLRYINEIRASLAEPSG---WAYWVAESLLGPGTQLADLKLTTTAQRHV  228
             VA   G  RIGLRYI+EIR      S    W  WV  SLLGP    A+L L       V
Sbjct  121  AVAAPAGVERIGLRYIDEIRVPAENGSSVPTWEQWVDASLLGPAHVGAELSLVPVVNEGV  180

Query  229  IQCEGPEPGDSLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPA  288
                G     +L LRY       +QSTP L+R       G  F +DIDS W      +P 
Sbjct  181  FVFSGGS-DHALVLRYGAQSDYAVQSTPDLRRPLP--PPGPLFKLDIDSFWQ-AADEVPE  236

Query  289  LDAHLVDEVAERLHTPIGPLFESLITSELRTKVLQQ  324
             D  L+   A+ LH P+  +FES+IT  LR +VL+ 
Sbjct  237  FDVDLILRQADALHEPVRGVFESVITDRLREEVLRN  272


>gi|339293846|gb|AEJ45957.1| hypothetical protein CCDC5079_0767 [Mycobacterium tuberculosis 
CCDC5079]
Length=271

 Score =  120 bits (302),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 88/266 (34%), Positives = 131/266 (50%), Gaps = 16/266 (6%)

Query  69   PNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLET--GEHTAHS  126
            PN P+ALV +E+RHP T+    SA   LK  L    PI  Q +     +    G  T  +
Sbjct  12   PNAPVALVTVEIRHPTTDSLTESANRALKHLLINDLPIERQAQDVSWGMTAPGGAPTPVA  71

Query  127  QK--KLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGL  184
             +  + V RD  TA + +  A+ +E T Y  +E F  +V  +V AR  V+ + G  RIGL
Sbjct  72   DRFVRYVNRDNTTAASLKNQAIVVETTAYRSFEAFTDVVMRVVDARAQVSSIVGLERIGL  131

Query  185  RYINEIRASLAEPSG------WAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD  238
            R++ EIR     P+G      W+ W+ E LLGP        + T  Q   +  E  +PG 
Sbjct  132  RFVLEIRV----PAGVDGRITWSNWIDEQLLGPQRFTPGGLVLTEWQGAAVYRE-LQPGK  186

Query  239  SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA  298
            SL +RY    G  +     L+R+  P   G FFL+DIDS W+     IP  +   +    
Sbjct  187  SLIVRYGPGMGQALDPNYHLRRIT-PAQTGPFFLLDIDSFWTPSGGSIPEYNRDALVSTF  245

Query  299  ERLHTPIGPLFESLITSELRTKVLQQ  324
            + L+ P   +F+ +ITS L+ ++L+Q
Sbjct  246  QDLYGPAQVVFQEMITSRLKDELLRQ  271


>gi|15840242|ref|NP_335279.1| hypothetical protein MT0852 [Mycobacterium tuberculosis CDC1551]
 gi|13880400|gb|AAK45093.1| hypothetical protein MT0852 [Mycobacterium tuberculosis CDC1551]
Length=305

 Score =  120 bits (301),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 88/266 (34%), Positives = 131/266 (50%), Gaps = 16/266 (6%)

Query  69   PNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLET--GEHTAHS  126
            PN P+ALV +E+RHP T+    SA   LK  L    PI  Q +     +    G  T  +
Sbjct  46   PNAPVALVTVEIRHPTTDSLTESANRELKHLLINDLPIERQAQDVSWGMTAPGGAPTPVA  105

Query  127  QK--KLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGL  184
             +  + V RD  TA + +  A+ +E T Y  +E F  +V  +V AR  V+ + G  RIGL
Sbjct  106  DRFVRYVNRDNTTAASLKNQAIVVETTAYRSFEAFTDVVMRVVDARAQVSSIVGLERIGL  165

Query  185  RYINEIRASLAEPSG------WAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD  238
            R++ EIR     P+G      W+ W+ E LLGP        + T  Q   +  E  +PG 
Sbjct  166  RFVLEIRV----PAGVDGRITWSNWIDEQLLGPQRFTPGGLVLTEWQGAAVYRE-LQPGK  220

Query  239  SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA  298
            SL +RY    G  +     L+R+  P   G FFL+DIDS W+     IP  +   +    
Sbjct  221  SLIVRYGPGMGQALDPNYHLRRIT-PAQTGPFFLLDIDSFWTPSGGSIPEYNRDALVSTF  279

Query  299  ERLHTPIGPLFESLITSELRTKVLQQ  324
            + L+ P   +F+ +ITS L+ ++L+Q
Sbjct  280  QDLYGPAQVVFQEMITSRLKDELLRQ  305


>gi|15607971|ref|NP_215346.1| hypothetical protein Rv0831c [Mycobacterium tuberculosis H37Rv]
 gi|31792019|ref|NP_854512.1| hypothetical protein Mb0854c [Mycobacterium bovis AF2122/97]
 gi|121636755|ref|YP_976978.1| hypothetical protein BCG_0884c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 69 more sequence titles
 Length=271

 Score =  120 bits (300),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 88/266 (34%), Positives = 131/266 (50%), Gaps = 16/266 (6%)

Query  69   PNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLET--GEHTAHS  126
            PN P+ALV +E+RHP T+    SA   LK  L    PI  Q +     +    G  T  +
Sbjct  12   PNAPVALVTVEIRHPTTDSLTESANRELKHLLINDLPIERQAQDVSWGMTAPGGAPTPVA  71

Query  127  QK--KLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGL  184
             +  + V RD  TA + +  A+ +E T Y  +E F  +V  +V AR  V+ + G  RIGL
Sbjct  72   DRFVRYVNRDNTTAASLKNQAIVVETTAYRSFEAFTDVVMRVVDARAQVSSIVGLERIGL  131

Query  185  RYINEIRASLAEPSG------WAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD  238
            R++ EIR     P+G      W+ W+ E LLGP        + T  Q   +  E  +PG 
Sbjct  132  RFVLEIRV----PAGVDGRITWSNWIDEQLLGPQRFTPGGLVLTEWQGAAVYRE-LQPGK  186

Query  239  SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA  298
            SL +RY    G  +     L+R+  P   G FFL+DIDS W+     IP  +   +    
Sbjct  187  SLIVRYGPGMGQALDPNYHLRRIT-PAQTGPFFLLDIDSFWTPSGGSIPEYNRDALVSTF  245

Query  299  ERLHTPIGPLFESLITSELRTKVLQQ  324
            + L+ P   +F+ +ITS L+ ++L+Q
Sbjct  246  QDLYGPAQVVFQEMITSRLKDELLRQ  271


>gi|289442234|ref|ZP_06431978.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289568784|ref|ZP_06449011.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289749347|ref|ZP_06508725.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289415153|gb|EFD12393.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289542538|gb|EFD46186.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289689934|gb|EFD57363.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=271

 Score =  120 bits (300),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 88/266 (34%), Positives = 131/266 (50%), Gaps = 16/266 (6%)

Query  69   PNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLET--GEHTAHS  126
            PN P+ALV +E+RHP T+    SA   LK  L    PI  Q +     +    G  T  +
Sbjct  12   PNAPVALVTVEIRHPTTDSLTESANRELKHLLINDLPIERQAQDVSWGMTAPGGAPTPVA  71

Query  127  QK--KLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGL  184
             +  + V RD  TA + +  A+ +E T Y  +E F  +V  +V AR  V+ + G  RIGL
Sbjct  72   DRFVRYVNRDNTTAASLKNQAIVVETTAYRSFEAFTDVVMRVVDARAQVSSIVGLERIGL  131

Query  185  RYINEIRASLAEPSG------WAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD  238
            R++ EIR     P+G      W+ W+ E LLGP        + T  Q   +  E  +PG 
Sbjct  132  RFVLEIRV----PAGVDGRIMWSNWIDEQLLGPQRFTPGGLVLTEWQGAAVYRE-LQPGK  186

Query  239  SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA  298
            SL +RY    G  +     L+R+  P   G FFL+DIDS W+     IP  +   +    
Sbjct  187  SLIVRYGPGMGQALDPNYHLRRIT-PAQTGPFFLLDIDSFWTPSGGSIPEYNRDALVSTF  245

Query  299  ERLHTPIGPLFESLITSELRTKVLQQ  324
            + L+ P   +F+ +ITS L+ ++L+Q
Sbjct  246  QDLYGPAQVVFQEMITSRLKDELLRQ  271


>gi|240171876|ref|ZP_04750535.1| hypothetical protein MkanA1_21350 [Mycobacterium kansasii ATCC 
12478]
Length=267

 Score =  118 bits (296),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 85/262 (33%), Positives = 127/262 (49%), Gaps = 8/262 (3%)

Query  69   PNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQ-EEVRQVNLETGEHTAHSQ  127
            PN P+ALV +E+RHP T+    S    LK  L    PI  Q ++V       G       
Sbjct  8    PNAPVALVTMEIRHPATDSLTESTSRELKHLLINDLPIERQAQDVSWGVTAPGAAPTPVA  67

Query  128  KKLV---ARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGL  184
             + V    RD   + + +  A+ +E + Y  +E F  +V  +  AR  V+ + G  RIGL
Sbjct  68   DRFVRYGNRDNTVSASLKNQAIVVETSAYRDFETFCDLVLRVADARAQVSSIVGVERIGL  127

Query  185  RYINEIRASLAEPS--GWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSLTL  242
            RY+ EIR  +       W  W+ E LLGP  ++A   L+ T  +       P+PG SL L
Sbjct  128  RYVLEIRVPVGVDGRVNWGNWIDEQLLGP-YRIAPGGLSLTEWQGAAVYREPQPGKSLIL  186

Query  243  RYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAERLH  302
            RY    G  +  +  L+R+  PP  G FFL+DIDS W+     IP  +   +      L+
Sbjct  187  RYGPGVGQALDQSYHLRRIT-PPQTGPFFLMDIDSFWTPVGGSIPEYNRDALVSTLTDLY  245

Query  303  TPIGPLFESLITSELRTKVLQQ  324
             P   +F+ LIT+ L+ ++L+Q
Sbjct  246  GPAREVFQDLITARLKDELLRQ  267


>gi|54023545|ref|YP_117787.1| hypothetical protein nfa15770 [Nocardia farcinica IFM 10152]
 gi|54015053|dbj|BAD56423.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=261

 Score =  117 bits (293),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 82/259 (32%), Positives = 118/259 (46%), Gaps = 8/259 (3%)

Query  68   YPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLE--TGEHTAH  125
            Y N P+A+V +E+RH  T+         ++++L    PI    +   +  E      T  
Sbjct  7    YRNPPIAMVAVEIRHSGTDTVTEEGYRAIRQQLRHQWPIELPAKDVAIEFEGTNPSPTVV  66

Query  126  SQKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGLR  185
              ++  +RD  TAI  RP A T+E  DY GWE  R  + A +  R  V+   G +R+GLR
Sbjct  67   EYRRYASRDLATAIVVRPGATTVETVDYKGWETLRQTLKAALDVRAAVSEPSGYVRVGLR  126

Query  186  YINEIRA-SLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSLTLRY  244
            YI+E+R         W+ W+  SLL    Q  D         H +    P  G  + LRY
Sbjct  127  YIDEVRVPGDGIAPDWSEWMHPSLL--AAQPDDTAGLPLHDWHGLSAFKPADGHMVVLRY  184

Query  245  AGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAERLHTP  304
                G  ++    L+R   P   G FFL+DIDS W +    IP      +    + LH P
Sbjct  185  GPRTGYAVEPDGHLKRPSSP--TGPFFLLDIDSFW-EVTGSIPEFAPDELVTKCDNLHAP  241

Query  305  IGPLFESLITSELRTKVLQ  323
            I  LFE L+T +LR +V  
Sbjct  242  IRKLFEGLVTDKLRKEVFD  260


>gi|183984817|ref|YP_001853108.1| hypothetical protein MMAR_4849 [Mycobacterium marinum M]
 gi|183178143|gb|ACC43253.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=270

 Score =  108 bits (270),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 82/261 (32%), Positives = 125/261 (48%), Gaps = 9/261 (3%)

Query  69   PNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQ-EEVRQVNLETGEHTAHSQ  127
            PN P+ALV  E+RHP T+    S+   LK  L    PI  Q ++V       G       
Sbjct  12   PNAPVALVTAEIRHPATDSLTESSSRELKHLLINDLPIERQAQDVSWGMTAPGAAPTPVA  71

Query  128  KKLV---ARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGL  184
             + V    RD   + + +  A+ +E + Y  ++ F  I+  +  AR  V+ + G  RIGL
Sbjct  72   DRFVRYGNRDNTVSASLKNQAIVVETSAYSSFDNFCDILLRVADARAQVSSIVGVERIGL  131

Query  185  RYINEIR--ASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDSLTL  242
            RY+ EIR  A +     W+ W+ E LLGP  ++A   L+    +        +PG SL L
Sbjct  132  RYVLEIRVPAGVDGRIAWSNWIDEQLLGP-QRIAPGGLSMAEWQGAAVYREAQPGKSLIL  190

Query  243  RYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAERLH  302
            RY    G  + +   L+R+      G FFL+DIDS W+ P   IP  +   +    + L+
Sbjct  191  RYGPGMGQALDANYHLRRVTA-AQTGPFFLMDIDSFWT-PLGSIPEFNRDALVSTLQDLY  248

Query  303  TPIGPLFESLITSELRTKVLQ  323
             P   +F+ LIT  LR ++L+
Sbjct  249  GPAREVFQDLITPRLRDELLR  269


>gi|289760960|ref|ZP_06520338.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289708466|gb|EFD72482.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=297

 Score =  108 bits (269),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 82/252 (33%), Positives = 120/252 (48%), Gaps = 16/252 (6%)

Query  69   PNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLET--GEHTAHS  126
            PN P+ALV +E+RHP T+    SA   LK  L    PI  Q +     +    G  T  +
Sbjct  46   PNAPVALVTVEIRHPTTDSLTESANRELKHLLINDLPIERQAQDVSWGMTAPGGAPTPVA  105

Query  127  QK--KLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGL  184
             +  + V RD  TA + +  A+ +E T Y  +E F  +V  +V AR  V+ + G  RIGL
Sbjct  106  DRFVRYVNRDNTTAASLKNQAIVVETTAYRSFEAFTDVVMRVVDARAQVSSIVGLERIGL  165

Query  185  RYINEIRASLAEPSG------WAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGD  238
            R++ EIR     P+G      W+ W+ E LLGP        + T  Q   +  E  +PG 
Sbjct  166  RFVLEIRV----PAGVDGRITWSNWIDEQLLGPQRFTPGGLVLTEWQGAAVYRE-LQPGK  220

Query  239  SLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVA  298
            SL +RY    G  +     L+R+  P   G FFL+DIDS W+     IP  +   +    
Sbjct  221  SLIVRYGPGMGQALDPNYHLRRIT-PAQTGPFFLLDIDSFWTPSGGSIPEYNRDALVSTF  279

Query  299  ERLHTPIGPLFE  310
            + L+ P   +F+
Sbjct  280  QDLYGPAQVVFQ  291


>gi|240171632|ref|ZP_04750291.1| hypothetical protein MkanA1_20118 [Mycobacterium kansasii ATCC 
12478]
Length=271

 Score = 74.3 bits (181),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 69/267 (26%), Positives = 108/267 (41%), Gaps = 25/267 (9%)

Query  68   YPNDPLALVLIELRHP-----RTEPPVPSAISILKEELARWTPILEQEEVRQVNLETGE-  121
            +P  PLALV  E+R       R +  + +    L++     TP         V    G  
Sbjct  8    FPKAPLALVTTEIRFTDSPRLRQQETLDAVAIALEDRFPLNTP------QTSVTFNVGSL  61

Query  122  ------HTAHSQKKLVARDRRT-AITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVA  174
                       ++ ++    RT ++T  P +   E T Y  +++FR  V A+  A  D  
Sbjct  62   GPGVLPQVEQERRVVLTNTTRTESVTITPSSFICETTAYREFDDFRVGVTAVCEALIDAN  121

Query  175  PVDGCIRIGLRYINEIRA--SLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCE  232
                 +R+GLRYI+E+R    + +   WA W+ + ++ P T   D       Q  V    
Sbjct  122  VRPALVRVGLRYIDEVRVPEPITDVRAWAKWIDDGIIRPLTIGPDDVAVRNVQGLVTFDL  181

Query  233  GPEPGDSLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAH  292
            G   G  L  +YA      +    FL R +  P  G FF++D D       + +  LDA 
Sbjct  182  G--DGKGLNFQYAALNQTPVVQPQFLNRGQFEP--GPFFVLDFDGFRDFGEQDVVRLDAD  237

Query  293  LVDEVAERLHTPIGPLFESLITSELRT  319
             V  V   +H P G +F+  IT + R 
Sbjct  238  EVTNVLTAVHDPTGAMFQRAITEDARN  264


>gi|336120556|ref|YP_004575342.1| hypothetical protein MLP_49250 [Microlunatus phosphovorus NM-1]
 gi|334688354|dbj|BAK37939.1| hypothetical protein MLP_49250 [Microlunatus phosphovorus NM-1]
Length=284

 Score = 55.8 bits (133),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 66/268 (25%), Positives = 101/268 (38%), Gaps = 31/268 (11%)

Query  72   PLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETGEHTAHSQKKL-  130
            PL   +IE+R P          + L +E     P+L  E+ +++  + G      +    
Sbjct  17   PLVYAVIEIRVPFAPRLSKGETAELLQEALAELPVLRAEKRQRLVPKDGNIQVEIEDGWR  76

Query  131  ---VARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGLRYI  187
               +A  R   +T    ++  E T YPG+E F     A +    + A   G  R+GLRYI
Sbjct  77   FLDLANSRSLVVT--NTSIVYETTRYPGFETFLGEFIACLHLISEHARPAGYERLGLRYI  134

Query  188  NEIRAS--LAEPSGWAYWVAESLL---------------GPGTQLADLKLTTTAQRHVIQ  230
            NE+  +  +     W  W+A  L+               G   QL DL++          
Sbjct  135  NEVWPTRPVQSFDDWKQWIAPELVTTLVRSEGEVHRNVDGDRPQLRDLEVHLQFSL-ADN  193

Query  231  CEGPEPGDSLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALD  290
            C       +LT R A   G  +     L+R   P A G+F +ID D  W      I   D
Sbjct  194  C-------ALTTRVATQTGLGVVGNDPLKRWVTPAAAGNFCVIDFDGFWPRIPDSIQPFD  246

Query  291  AHLVDEVAERLHTPIGPLFESLITSELR  318
               +    + +H P+   F    T E R
Sbjct  247  IEKISRQLKAVHNPVKGGFGWATTHEFR  274


>gi|167566722|ref|ZP_02359638.1| hypothetical protein BoklE_29451 [Burkholderia oklahomensis EO147]
Length=255

 Score = 53.9 bits (128),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 29/91 (32%), Positives = 42/91 (47%), Gaps = 0/91 (0%)

Query  127  QKKLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGLRY  186
            Q+   A DR   +     AM +  T Y  +EE ++   A + A     P     R GLRY
Sbjct  74   QRSFFAIDRSRQLVLAAQAMFINYTSYSTYEETKAQFVAAIDAISASFPEAKVARFGLRY  133

Query  187  INEIRASLAEPSGWAYWVAESLLGPGTQLAD  217
            INEI   L +P+ W  ++ + LLG  +   D
Sbjct  134  INEITVPLDDPTQWETYIDDRLLGSRSFFGD  164


>gi|220915153|ref|YP_002490457.1| hypothetical protein A2cp1_0030 [Anaeromyxobacter dehalogenans 
2CP-1]
 gi|219953007|gb|ACL63391.1| hypothetical protein A2cp1_0030 [Anaeromyxobacter dehalogenans 
2CP-1]
Length=263

 Score = 53.1 bits (126),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 67/226 (30%), Positives = 101/226 (45%), Gaps = 27/226 (11%)

Query  66   PKYP-----NDPLALVLIELRHPRTEPPVPSAISI-LKEELARWTPIL--EQEEVRQVNL  117
            P+YP       PL LV+ ++R P       +A +   ++ LA   P+   EQ+   QV  
Sbjct  5    PEYPRVLFKKSPLRLVVGQIRFPLQLRLADTAFTAPFQDALADDYPVAAREQQVAFQVTP  64

Query  118  ETGEHTAHSQK--KLVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAP  175
            + G   A S+   +  +R+   A+     A+TLEV  Y   EEF S    ++ A ++   
Sbjct  65   KGGLQAAPSETLLRFASRNGDWAVVLGESALTLEVRGYSAVEEFSSRFEKVLGAAKERLR  124

Query  176  VDGCIRIGLRYINEIRA----SLAEPSGWAYWVAESLLG-PGTQLADLKLTTTAQRHVIQ  230
            +    R+GLRYINE R     SLA+   WA  +   LLG  G  L    L  T +    +
Sbjct  125  LRERSRLGLRYINEFRHDAGRSLAD---WAKLMNPELLGFAGNNL----LGGTVEHMAHE  177

Query  231  CEGPEPGDSLTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDID  276
                     L +R+    G V++  P       P AEG F+L+D+D
Sbjct  178  VRVRRDDGVLAIRHGLLVGGVVEPIP-----TAPVAEGRFYLLDMD  218


>gi|126179006|ref|YP_001046971.1| hypothetical protein Memar_1056 [Methanoculleus marisnigri JR1]
 gi|125861800|gb|ABN56989.1| hypothetical protein Memar_1056 [Methanoculleus marisnigri JR1]
Length=257

 Score = 47.0 bits (110),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 67/262 (26%), Positives = 98/262 (38%), Gaps = 36/262 (13%)

Query  67   KYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETG------  120
            KY N P A V+ E R P   P   +   IL   L    P  +Q  VR+V +  G      
Sbjct  6    KYVNPPAAEVICEFRFPEDTPWDLTYPGILYSHLKDTYPKRDQRYVREVVMLLGPEGLRE  65

Query  121  EHTAHSQKKLVARDRRTAITFRPDAMTLEVTD-YPGWEEFRSIVHAMVTARQDVAPVDGC  179
            E     +   +A D   A+   P  +++     Y  WE F   +H      ++V   D  
Sbjct  66   ELLVAERSIFLAEDEGCAVQVGPRLLSVSCQKPYVHWEAFSEQIHGAFDRFREVIGTDAI  125

Query  180  IRIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPGDS  239
              + LRY+N I     E +   Y+     L P       +L       +  CE     D 
Sbjct  126  GTMNLRYVNFIEIPEREVTLSDYFAFYPTLPP-------ELPQVPAGFITGCEFSFHDDR  178

Query  240  LTLRYAGARGAVIQSTPFLQRLKEPPAEGDFFLIDIDSAWSDPCKGIPALDAHLVDEVAE  299
               R      AV +ST           E + FL++ID   ++  + IP       D VA+
Sbjct  179  DNCR-VELTDAVPEST-----------EHNAFLLNIDYYLTEG-QNIPT------DGVAD  219

Query  300  RL---HTPIGPLFESLITSELR  318
             L   HT +  +FE+ I   LR
Sbjct  220  WLEIAHTHVRDIFEACIRDALR  241


>gi|87306732|ref|ZP_01088879.1| hypothetical protein DSM3645_10372 [Blastopirellula marina DSM 
3645]
 gi|87290911|gb|EAQ82798.1| hypothetical protein DSM3645_10372 [Blastopirellula marina DSM 
3645]
Length=289

 Score = 46.6 bits (109),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 23/60 (39%), Positives = 33/60 (55%), Gaps = 0/60 (0%)

Query  132  ARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGCIRIGLRYINEIR  191
             R RR AI    D +T EV+ Y  +EEF +   A +    + A +   ++IGLRY+N IR
Sbjct  102  GRKRREAIILTKDFVTYEVSSYTNFEEFVARFSAALDVIANYANITEAVQIGLRYVNVIR  161


>gi|219852641|ref|YP_002467073.1| hypothetical protein Mpal_2051 [Methanosphaerula palustris E1-9c]
 gi|219546900|gb|ACL17350.1| conserved hypothetical protein [Methanosphaerula palustris E1-9c]
Length=290

 Score = 41.6 bits (96),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 20/62 (33%), Positives = 33/62 (54%), Gaps = 1/62 (1%)

Query  130  LVARDRRTAITFRPDAMTLEVTD-YPGWEEFRSIVHAMVTARQDVAPVDGCIRIGLRYIN  188
             + ++RR  I F    +++     YP WE+FR I+  +  A   V  + G  RIGL Y++
Sbjct  117  FLTQNRRMFIQFGERIVSIHCLKPYPSWEKFRPIIEQVYGALSKVTEIKGVDRIGLLYVD  176

Query  189  EI  190
            +I
Sbjct  177  KI  178


>gi|56478815|ref|YP_160404.1| hypothetical protein ebA5936 [Aromatoleum aromaticum EbN1]
 gi|56314858|emb|CAI09503.1| hypothetical protein ebA5936 [Aromatoleum aromaticum EbN1]
Length=266

 Score = 40.8 bits (94),  Expect = 0.32, Method: Compositional matrix adjust.
 Identities = 66/269 (25%), Positives = 104/269 (39%), Gaps = 23/269 (8%)

Query  64   AHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETGEHT  123
             +PK    PL LVL E R  R     PSA+++LKE +A     + +   +QV L     T
Sbjct  6    GYPKLERQPLTLVLAEFRFARVTFD-PSALAMLKERMASRFGEMTEGVAQQVQLGDAGVT  64

Query  124  AHSQKKLVAR--DRRTAITFRPDAMTLEVTDYPGWEEFR----SIVHAMVTARQDVAPVD  177
                  ++ R  +   ++    D +    T YP +E F     +++ A++   Q V    
Sbjct  65   IMPAPYVIWRAPESGASVHLEVDRIAYATTMYPRFEGFARDCLAVLEALIETLQPVT---  121

Query  178  GCIRIGLRYINEIRASLAEPSGWAYWVAESLLGPGTQLADLKLTTTAQRHVIQCEGPEPG  237
               R+GLRY + I   +  P        E+ L P + LA    +    RH+ +       
Sbjct  122  -LHRVGLRYNDAI---IPMPDELLEQYVEAPLLPFSPLA--AGSGAVVRHLSETVVQTTA  175

Query  238  DSLTLR-YAGARGAVIQSTPFLQ-----RLKEPPAEGDFFLIDIDSAWSDPCKGIPALDA  291
             +L +R  AG  G  +      Q     R+  PP +    ++D D  W        A D 
Sbjct  176  GALVVRALAGMHGLGMMPDLLGQFGLPLRVDVPP-DRPVAVLDFDHYWEVAEAEGVAFDV  234

Query  292  HLVDEVAERLHTPIGPLFESLITSELRTK  320
                +   RLH P    F  +     RT+
Sbjct  235  DTASDRLTRLHEPAREAFWKVTKEFARTQ  263


>gi|300113075|ref|YP_003759650.1| hypothetical protein Nwat_0359 [Nitrosococcus watsonii C-113]
 gi|299539012|gb|ADJ27329.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
Length=259

 Score = 40.0 bits (92),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 29/131 (23%), Positives = 57/131 (44%), Gaps = 3/131 (2%)

Query  62   VTAHPKYPNDPLALVLIELRHPRTEPPVPSAISILKEELARWTPILEQEEVRQVNLETGE  121
            +  + K  N PL  VL E R       +   I  ++E L +  PI + +  + V ++ G 
Sbjct  1    MDGYKKLENQPLKFVLAEFRFSPV-MQIAEYIPKIQEALRKQYPIEKTQSEQTVQVQPGG  59

Query  122  HTAHSQKK--LVARDRRTAITFRPDAMTLEVTDYPGWEEFRSIVHAMVTARQDVAPVDGC  179
                +  +   ++ D+++AI    + +     +YP ++ F +     +    D+      
Sbjct  60   IAVSTVNRWAFISADKKSAIEINQERLVYITAEYPRFDGFSAACKQAIETLVDIVEPSLI  119

Query  180  IRIGLRYINEI  190
            +RIGLRY + I
Sbjct  120  LRIGLRYSDLI  130



Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 580492275184




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40