BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0348
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
gi|254230710|ref|ZP_04924037.1| hypothetical protein TBCG_00343 ... 445 3e-123
gi|15607489|ref|NP_214862.1| transcriptional regulatory protein ... 444 4e-123
gi|289748831|ref|ZP_06508209.1| transcriptional regulator [Mycob... 442 2e-122
gi|336120958|ref|YP_004575745.1| hypothetical protein MLP_53280 ... 126 2e-27
gi|54023546|ref|YP_117788.1| hypothetical protein nfa15780 [Noca... 97.4 1e-18
gi|240171631|ref|ZP_04750290.1| putative transcriptional regulat... 85.9 4e-15
gi|170017168|ref|YP_001728087.1| galactose-1-phosphate uridylylt... 40.8 0.13
gi|220915154|ref|YP_002490458.1| hypothetical protein A2cp1_0031... 40.8 0.14
gi|163757638|ref|ZP_02164727.1| putative atp-binding abc transpo... 40.0 0.25
gi|283471295|emb|CAQ50506.1| two component sensor protein [Staph... 37.7 1.1
gi|90421959|ref|YP_530329.1| hypothetical protein RPC_0435 [Rhod... 37.7 1.1
gi|296444469|ref|ZP_06886434.1| conserved hypothetical protein [... 37.4 1.5
gi|262279851|ref|ZP_06057636.1| conserved hypothetical protein [... 36.6 2.5
gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_0284... 36.6 2.9
gi|215484235|ref|YP_002326462.1| Repressor protein C2 [Acinetoba... 36.2 3.2
gi|332853630|ref|ZP_08434860.1| peptidase S24-like protein [Acin... 36.2 3.3
gi|168700294|ref|ZP_02732571.1| hypothetical protein GobsU_12250... 35.4 5.8
gi|313127277|ref|YP_004037547.1| hypothetical protein Hbor_25480... 35.4 6.0
gi|341848695|gb|EGS89855.1| ATPase/histidine kinase/DNA gyrase B... 35.0 6.9
gi|253733088|ref|ZP_04867253.1| sensor histidine kinase KdpD [St... 35.0 6.9
gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix pro... 35.0 7.1
gi|251771868|gb|EES52442.1| carbamoyl-phosphate synthase, large ... 35.0 8.3
gi|297210102|ref|ZP_06926495.1| sensor histidine kinase KdpD [St... 34.7 9.0
gi|21283731|ref|NP_646819.1| sensor protein KdpD [Staphylococcus... 34.7 9.0
>gi|254230710|ref|ZP_04924037.1| hypothetical protein TBCG_00343 [Mycobacterium tuberculosis C]
gi|124599769|gb|EAY58779.1| hypothetical protein TBCG_00343 [Mycobacterium tuberculosis C]
Length=219
Score = 445 bits (1144), Expect = 3e-123, Method: Compositional matrix adjust.
Identities = 217/217 (100%), Positives = 217/217 (100%), Gaps = 0/217 (0%)
Query 1 MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA 60
MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA
Sbjct 3 MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA 62
Query 61 HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL 120
HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL
Sbjct 63 HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL 122
Query 121 KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASTHTGDGT 180
KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASTHTGDGT
Sbjct 123 KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASTHTGDGT 182
Query 181 VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR 217
VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR
Sbjct 183 VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR 219
>gi|15607489|ref|NP_214862.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15839734|ref|NP_334771.1| hypothetical protein MT0363 [Mycobacterium tuberculosis CDC1551]
gi|31791526|ref|NP_854019.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=217
Score = 444 bits (1143), Expect = 4e-123, Method: Compositional matrix adjust.
Identities = 217/217 (100%), Positives = 217/217 (100%), Gaps = 0/217 (0%)
Query 1 MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA 60
MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA
Sbjct 1 MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA 60
Query 61 HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL 120
HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL
Sbjct 61 HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL 120
Query 121 KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASTHTGDGT 180
KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASTHTGDGT
Sbjct 121 KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASTHTGDGT 180
Query 181 VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR 217
VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR
Sbjct 181 VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR 217
>gi|289748831|ref|ZP_06508209.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289689418|gb|EFD56847.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=217
Score = 442 bits (1136), Expect = 2e-122, Method: Compositional matrix adjust.
Identities = 216/217 (99%), Positives = 216/217 (99%), Gaps = 0/217 (0%)
Query 1 MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA 60
MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA
Sbjct 1 MTISFSSSNLRDDATSGNGDYRLDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREA 60
Query 61 HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL 120
HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL
Sbjct 61 HVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRL 120
Query 121 KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASTHTGDGT 180
KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALAS HTGDGT
Sbjct 121 KIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALASIHTGDGT 180
Query 181 VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR 217
VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR
Sbjct 181 VEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPKR 217
>gi|336120958|ref|YP_004575745.1| hypothetical protein MLP_53280 [Microlunatus phosphovorus NM-1]
gi|334688757|dbj|BAK38342.1| hypothetical protein MLP_53280 [Microlunatus phosphovorus NM-1]
Length=215
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/163 (44%), Positives = 95/163 (59%), Gaps = 5/163 (3%)
Query 55 DTRREAHVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGV 114
D + H E ER + + M L +LAD GFAWRDIAR+VGVSVPA+ +WRKG
Sbjct 56 DLHKRTHENEWRKAAAERGKASVMSMLTELADLGFAWRDIARMVGVSVPAVQRWRKGEKA 115
Query 115 TGENRLKIARLLALIDMLSDRF-IGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALAS 173
+G++R +IA LLA D+++ + + E ASW EMP+ + +T + L R DLV AS
Sbjct 116 SGDSRHRIASLLAACDLITSHYMVDEIASWFEMPLSSSAPVTPIVLYAANRADLVFEFAS 175
Query 174 THTGDGTVEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPK 216
H E +L+E D DWRE + FE + A DG SIR K
Sbjct 176 GHVDP---EALLSEFDPDWRERYRSD-FEVFEAGDGNRSIRMK 214
>gi|54023546|ref|YP_117788.1| hypothetical protein nfa15780 [Nocardia farcinica IFM 10152]
gi|54015054|dbj|BAD56424.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=274
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/168 (34%), Positives = 88/168 (53%), Gaps = 4/168 (2%)
Query 50 HGQARDTRREAHVVELESKTGERARCAPMHALEQLADYGFAWRDIARVVGVSVPAITKWR 109
H +A D R +++E + + + AP+ L L G +WRDIAR++ VSV A+ KWR
Sbjct 108 HTKAADDHRSKYLLEWQERAKLHSERAPVDMLSGLWHSGLSWRDIARLLKVSVAAVQKWR 167
Query 110 KGAGVTGENRLKIARLLALIDMLSDRFIG-EPASWLEMPIQAGVGITRMDLLERGRYDLV 168
G ++ +N + +A D ++ G + ASW+++PI V +T D+ +G L
Sbjct 168 SGEKMSSKNFAHLRDFVAAYDTIAAHKPGVDIASWIDIPILTDVPVTPRDIWVKGDPKLF 227
Query 169 LALASTHTGDGTVEYVLNETDKDWRETVVDNAFESYTAEDGVISIRPK 216
A GD E VL+ D DWR D+ FE++ DGV+ IR K
Sbjct 228 FEYA---LGDMKPETVLDAFDPDWRRRYRDDGFEAFVGTDGVLGIRTK 272
>gi|240171631|ref|ZP_04750290.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=215
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/176 (35%), Positives = 95/176 (54%), Gaps = 10/176 (5%)
Query 44 RQFTELHG-QARDTRREAHVVELESKTGERARCAPMHALEQLA-DYGFAWRDIARVVGVS 101
R T+L G Q +D + + + L+ +T +++ L +LA G AW IA + VS
Sbjct 41 RTQTDLAGEQVQDLQNKVRALNLDQRTRNKSKHDVPALLNELAYQRGMAWTHIAEIAEVS 100
Query 102 VPAITKWRKGAGVTGENRLKIARLLALIDMLSDR-FIGEPASWLEM--PIQAGVGITRMD 158
V A+ KWRKG + E+R ++A+ AL+D L + I +PA+W+EM P+ AG I +D
Sbjct 101 VSAVRKWRKGYDASPESRSRLAKFTALLDTLEEEAHIDDPATWMEMELPLAAGYYIRPLD 160
Query 159 LLERGRYDLVLALASTHTGDGTVEYVLNETDKDWRETVVDNAFESYTAEDGVISIR 214
L G+ +AL G VE++L+ WR ++FE ++ DG+ SIR
Sbjct 161 LYLNGQD---MALFDIAEQRGPVEHILDSVRPGWRAN--RSSFEVFSDTDGMRSIR 211
>gi|170017168|ref|YP_001728087.1| galactose-1-phosphate uridylyltransferase [Leuconostoc citreum
KM20]
gi|169804025|gb|ACA82643.1| Galactose-1-phosphate uridylyltransferase [Leuconostoc citreum
KM20]
Length=491
Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (59%), Gaps = 4/55 (7%)
Query 118 NRLKIARLLALIDMLSDRFIGEPASWLEMPIQAGVGITRMDLLERGRYDLVLALA 172
+RL ++RLLA +D D F+G A ++PI G I D + GRYD+ +A A
Sbjct 232 DRLNLSRLLAFVDQFPDYFVGSNA---DLPIVGG-SILSHDHFQGGRYDMPMAKA 282
>gi|220915154|ref|YP_002490458.1| hypothetical protein A2cp1_0031 [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953008|gb|ACL63392.1| hypothetical protein A2cp1_0031 [Anaeromyxobacter dehalogenans
2CP-1]
Length=281
Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/84 (33%), Positives = 44/84 (53%), Gaps = 5/84 (5%)
Query 88 GFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIARLLALIDMLSDRFIGEP---ASWL 144
G IA ++GVS + WR G+ G R + +++A+I+ ++ RF GEP A+WL
Sbjct 149 GLEMERIASLLGVSRTTLYAWRDGSKPRGSKRDHLLQVVAVIEEVARRF-GEPRTVAAWL 207
Query 145 EMPIQAGVGITRMDLLERGRYDLV 168
P A + D++ RY+L
Sbjct 208 LTPSPAS-NLMPFDVIRERRYELC 230
>gi|163757638|ref|ZP_02164727.1| putative atp-binding abc transporter protein [Hoeflea phototrophica
DFL-43]
gi|162285140|gb|EDQ35422.1| putative atp-binding abc transporter protein [Hoeflea phototrophica
DFL-43]
Length=555
Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/136 (28%), Positives = 61/136 (45%), Gaps = 29/136 (21%)
Query 100 VSVPAITKWRKGAGVTGENRLKIARLLALIDMLSDRFI--GEPASWLEMPIQAGVGITRM 157
V + A T+WR +G R +IA A++ L RF+ EP S L+M +QA V +
Sbjct 425 VGLDAATRWRYPHEFSGGQRQRIAIARAMV--LKPRFVMLDEPTSALDMSVQAQV----V 478
Query 158 DLLE--RGRYDL-------------------VLALASTHTGDGTVEYVLNETDKDWRETV 196
DLL + R+DL ++ A G + + ++ D+ + +
Sbjct 479 DLLRDLQARHDLAYLFISHDLKVVRALANDVIVMRAGKVVEQGIADQIFDQPKTDYTKAL 538
Query 197 VDNAFESYTAEDGVIS 212
+ AF TA+ GV+S
Sbjct 539 MAAAFNLETADSGVVS 554
>gi|283471295|emb|CAQ50506.1| two component sensor protein [Staphylococcus aureus subsp. aureus
ST398]
Length=885
Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 26/101 (26%), Positives = 44/101 (44%), Gaps = 3/101 (2%)
Query 23 LDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREAHVVELESKTGERARCAPMHALE 82
+D+L T S DR + Y E+ D ++ +ES + + R +H E
Sbjct 99 IDELAHTNISR---DRHEKRYMDIEEILNHGIDVHTTLNIQHIESLSSQIERMTGVHVKE 155
Query 83 QLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIA 123
++ DY D+ VV +S + K K V ++RL +A
Sbjct 156 RVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKKDRLDVA 196
>gi|90421959|ref|YP_530329.1| hypothetical protein RPC_0435 [Rhodopseudomonas palustris BisB18]
gi|90103973|gb|ABD86010.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=112
Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query 75 CAPMHALEQLADYG-FAWRDIARVVGVSVPAITKWRKGAGVTG-ENRLKIARLLALIDML 132
A M L L D G +DIA +V VS +++W G + + IA L ++D L
Sbjct 3 TAVMKILNVLRDEGGLQGKDIANIVAVSPATVSRWSSGKATPDLKTQTIIAELRYVVDRL 62
Query 133 SDRFIG-EPASWLEMPIQAGVGITRMDLLERGRYDLVLAL 171
++ + E WL P G +DL+ G+ +LVL +
Sbjct 63 AEFYTADETRLWLHTPHPMLDGEKAIDLINAGKTELVLGI 102
>gi|296444469|ref|ZP_06886434.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296258116|gb|EFH05178.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length=112
Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/89 (32%), Positives = 42/89 (48%), Gaps = 2/89 (2%)
Query 85 ADYGFAWRDIARVVGVSVPAITKWRKGAGVTG-ENRLKIARLLALIDMLSDRFI-GEPAS 142
+D G +DIA +V VS +++W G + IA L ++D LSD + E
Sbjct 14 SDGGLQGKDIANIVAVSPATVSRWSNGKATPDLRTQTVIAELRYVVDRLSDFYTPDETRL 73
Query 143 WLEMPIQAGVGITRMDLLERGRYDLVLAL 171
WL G +DL+ GR + VLA+
Sbjct 74 WLHAKHPMLNGERAIDLINSGRTEAVLAV 102
>gi|262279851|ref|ZP_06057636.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202]
gi|262260202|gb|EEY78935.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202]
Length=263
Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query 79 HALEQLADYGFAWRDIARVVGVSVPAITKWRKGAG--VTGENRLKIARLLALIDMLSDRF 136
+A+E L D+AR VGV P+++ W G + GEN LK A+ L +
Sbjct 10 YAMEVLPTKKIKGVDLARAVGVKPPSVSDWLSGKSKKMEGENLLKAAKYLKVSAAWLATG 69
Query 137 IGEP 140
+GEP
Sbjct 70 VGEP 73
>gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
27755]
gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
27755]
Length=295
Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/85 (32%), Positives = 44/85 (52%), Gaps = 6/85 (7%)
Query 88 GFAWRDIARVVGVSVPAITKWRKGAGVTG-ENRLKIARL--LALIDMLSDRFIGEPASWL 144
G + +A +GVS A+TKW GAG+ EN + I+ L +++ D+LS+ +
Sbjct 17 GMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISIDDLLSNERDSKKVVET 76
Query 145 EMPIQAGVGITRMDLLERGRYDLVL 169
E ++ IT D+ E YD+ L
Sbjct 77 EYLYES---ITEYDIDESKHYDMKL 98
>gi|215484235|ref|YP_002326462.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294]
gi|213987961|gb|ACJ58260.1| Repressor protein C2 [Acinetobacter baumannii AB307-0294]
Length=230
Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/52 (37%), Positives = 28/52 (54%), Gaps = 2/52 (3%)
Query 79 HALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVT--GENRLKIARLLAL 128
+A+E L D+AR VGV P+++ W G T GEN LK ++ L +
Sbjct 10 YAMEVLPPKKIKGVDLARAVGVKPPSVSDWLSGKSKTMEGENLLKASKFLGV 61
>gi|332853630|ref|ZP_08434860.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
gi|332870803|ref|ZP_08439453.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
gi|332728454|gb|EGJ59828.1| peptidase S24-like protein [Acinetobacter baumannii 6013150]
gi|332732013|gb|EGJ63290.1| peptidase S24-like protein [Acinetobacter baumannii 6013113]
Length=227
Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/52 (37%), Positives = 28/52 (54%), Gaps = 2/52 (3%)
Query 79 HALEQLADYGFAWRDIARVVGVSVPAITKWRKGAGVT--GENRLKIARLLAL 128
+A+E L D+AR VGV P+++ W G T GEN LK ++ L +
Sbjct 10 YAMEVLPPKKIKGVDLARAVGVKPPSVSDWLSGKSKTMEGENLLKASKFLGV 61
>gi|168700294|ref|ZP_02732571.1| hypothetical protein GobsU_12250 [Gemmata obscuriglobus UQM 2246]
Length=440
Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/140 (27%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query 40 DVTYRQFTELHGQARDTRREAHVVELE----SKTGERARCAPMHALEQLADY------GF 89
D Y+ F +L+G+A+D A V+++ K G+R A L++ A +
Sbjct 182 DDPYQVFNKLYGRAKDNEALASVLDIVKDDLKKVGDRVGTADKKLLDEHAAFVREMEKEL 241
Query 90 AWRDIARVVGVSVPAITKWRKGAGVTGENRLKIARLLALIDMLSDRFIGEPASWLEMPIQ 149
+ VG +VP + G +N KIA+ A ID++ + F + A + I
Sbjct 242 KEQKAVATVGHAVPQL---EPGVRRDNDNMPKIAK--AQIDLMVNSFAADFARVASLQIT 296
Query 150 AGVGITRMDLLE--RGRYDL 167
VG+ RM L+ G ++L
Sbjct 297 NSVGMPRMKWLDINEGHHEL 316
>gi|313127277|ref|YP_004037547.1| hypothetical protein Hbor_25480 [Halogeometricum borinquense
DSM 11551]
gi|312293642|gb|ADQ68102.1| uncharacterized conserved protein [Halogeometricum borinquense
DSM 11551]
Length=302
Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/53 (33%), Positives = 31/53 (59%), Gaps = 0/53 (0%)
Query 82 EQLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIARLLALIDMLSD 134
E+L D GF R++A +G+S A++K+ G E L+ R+ L++ ++D
Sbjct 22 EELRDRGFTQREVADALGISQSAVSKYAHGEVSRNETLLEDERVQELVERVAD 74
>gi|341848695|gb|EGS89855.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus
aureus subsp. aureus 21259]
Length=885
Score = 35.0 bits (79), Expect = 6.9, Method: Composition-based stats.
Identities = 25/101 (25%), Positives = 43/101 (43%), Gaps = 3/101 (2%)
Query 23 LDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREAHVVELESKTGERARCAPMHALE 82
+D+L T S DR + Y E+ D ++ +ES + + +H E
Sbjct 99 IDELAHTNISR---DRHEKRYMDIEEILNHGIDVHTTLNIQHIESLSSQIELMTAVHVKE 155
Query 83 QLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIA 123
++ DY D+ VV +S + K K V ++RL +A
Sbjct 156 RVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKKDRLDVA 196
>gi|253733088|ref|ZP_04867253.1| sensor histidine kinase KdpD [Staphylococcus aureus subsp. aureus
TCH130]
gi|253728921|gb|EES97650.1| sensor histidine kinase KdpD [Staphylococcus aureus subsp. aureus
TCH130]
Length=770
Score = 35.0 bits (79), Expect = 6.9, Method: Composition-based stats.
Identities = 25/101 (25%), Positives = 43/101 (43%), Gaps = 3/101 (2%)
Query 23 LDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREAHVVELESKTGERARCAPMHALE 82
+D+L T S DR + Y E+ D ++ +ES + + +H E
Sbjct 123 IDELAHTNISR---DRHEKRYMDIEEILNHGIDVHTTLNIQHIESLSSQIELMTAVHVKE 179
Query 83 QLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIA 123
++ DY D+ VV +S + K K V ++RL +A
Sbjct 180 RVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKKDRLDVA 220
>gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
gi|311100059|gb|EFQ58270.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
Length=291
Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/89 (31%), Positives = 40/89 (45%), Gaps = 2/89 (2%)
Query 86 DYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIARLLALIDMLSDRFIGEPASWLE 145
+ GF+ +A + VS AITKW G G+ + L+ L I + D + E AS +E
Sbjct 13 ELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQISL--DDLLAESASPIE 70
Query 146 MPIQAGVGITRMDLLERGRYDLVLALAST 174
T D+ +DL LA + T
Sbjct 71 PKDFLYQSYTSYDIDRPKHFDLNLASSQT 99
>gi|251771868|gb|EES52442.1| carbamoyl-phosphate synthase, large subunit [Leptospirillum ferrodiazotrophum]
Length=1080
Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 36/64 (57%), Gaps = 6/64 (9%)
Query 57 RREAHVVELESKTGERARCAPMHA-----LEQLADYGFAWRDIARVVGVSVPAITKWRKG 111
R A +VELE + GE R P+ A L L + GF+ R +AR++G S + + R+
Sbjct 460 REFAAIVELEREVGE-FRGQPLDAIPSEFLRLLKENGFSDRALARLLGSSETEVRERRRA 518
Query 112 AGVT 115
AG+T
Sbjct 519 AGIT 522
>gi|297210102|ref|ZP_06926495.1| sensor histidine kinase KdpD [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300910464|ref|ZP_07127916.1| sensor histidine kinase KdpD [Staphylococcus aureus subsp. aureus
TCH70]
gi|296885302|gb|EFH24242.1| sensor histidine kinase KdpD [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300888306|gb|EFK83497.1| sensor histidine kinase KdpD [Staphylococcus aureus subsp. aureus
TCH70]
Length=909
Score = 34.7 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 25/101 (25%), Positives = 43/101 (43%), Gaps = 3/101 (2%)
Query 23 LDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREAHVVELESKTGERARCAPMHALE 82
+D+L T S DR + Y E+ D ++ +ES + + +H E
Sbjct 123 IDELAHTNISR---DRHEKRYMDIEEILNHGIDVHTTLNIQHIESLSSQIELMTGIHVKE 179
Query 83 QLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIA 123
++ DY D+ VV +S + K K V ++RL +A
Sbjct 180 RVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKKDRLDVA 220
>gi|21283731|ref|NP_646819.1| sensor protein KdpD [Staphylococcus aureus subsp. aureus MW2]
gi|49486872|ref|YP_044093.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
gi|21205173|dbj|BAB95867.1| sensor protein KdpD [Staphylococcus aureus subsp. aureus MW2]
gi|49245315|emb|CAG43790.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
Length=885
Score = 34.7 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 25/101 (25%), Positives = 43/101 (43%), Gaps = 3/101 (2%)
Query 23 LDKLPETTPSTSVFDRADVTYRQFTELHGQARDTRREAHVVELESKTGERARCAPMHALE 82
+D+L T S DR + Y E+ D ++ +ES + + +H E
Sbjct 99 IDELAHTNISR---DRHEKRYMDIEEILNHGIDVHTTLNIQHIESLSSQIELMTGIHVKE 155
Query 83 QLADYGFAWRDIARVVGVSVPAITKWRKGAGVTGENRLKIA 123
++ DY D+ VV +S + K K V ++RL +A
Sbjct 156 RVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKKDRLDVA 196
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 263865364408
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40