BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0361 Length=275 Score E Sequences producing significant alignments: (Bits) Value gi|15607502|ref|NP_214875.1| hypothetical protein Rv0361 [Mycoba... 562 2e-158 gi|298523838|ref|ZP_07011247.1| conserved hypothetical protein [... 487 7e-136 gi|240173044|ref|ZP_04751702.1| hypothetical protein MkanA1_2727... 382 2e-104 gi|118618268|ref|YP_906600.1| hypothetical protein MUL_2842 [Myc... 372 4e-101 gi|254822873|ref|ZP_05227874.1| hypothetical protein MintA_23289... 352 4e-95 gi|342859136|ref|ZP_08715790.1| hypothetical protein MCOL_09668 ... 345 4e-93 gi|254777220|ref|ZP_05218736.1| hypothetical protein MaviaA2_214... 344 7e-93 gi|41409961|ref|NP_962797.1| hypothetical protein MAP3863c [Myco... 344 8e-93 gi|118467008|ref|YP_883911.1| hypothetical protein MAV_4784 [Myc... 342 5e-92 gi|15827062|ref|NP_301325.1| hypothetical protein ML0285 [Mycoba... 320 2e-85 gi|296167839|ref|ZP_06850023.1| conserved hypothetical protein [... 312 4e-83 gi|118473560|ref|YP_885159.1| hypothetical protein MSMEG_0753 [M... 255 6e-66 gi|108797484|ref|YP_637681.1| hypothetical protein Mmcs_0504 [My... 239 2e-61 gi|120401686|ref|YP_951515.1| hypothetical protein Mvan_0671 [My... 226 2e-57 gi|315442208|ref|YP_004075087.1| hypothetical protein Mspyr1_054... 225 6e-57 gi|145220838|ref|YP_001131516.1| hypothetical protein Mflv_0233 ... 225 6e-57 gi|333988998|ref|YP_004521612.1| hypothetical protein JDM601_035... 216 3e-54 gi|169631331|ref|YP_001704980.1| hypothetical protein MAB_4253 [... 210 2e-52 gi|312141297|ref|YP_004008633.1| membrane protein [Rhodococcus e... 90.5 2e-16 gi|54027352|ref|YP_121594.1| hypothetical protein nfa53780 [Noca... 75.1 1e-11 gi|226365021|ref|YP_002782804.1| hypothetical protein ROP_56120 ... 70.9 2e-10 gi|111022503|ref|YP_705475.1| hypothetical protein RHA1_ro05537 ... 70.1 4e-10 gi|343928554|ref|ZP_08768001.1| hypothetical protein GOALK_118_0... 61.2 2e-07 gi|229493098|ref|ZP_04386893.1| conserved hypothetical protein [... 58.5 1e-06 gi|226304902|ref|YP_002764860.1| hypothetical protein RER_14130 ... 58.2 1e-06 gi|296138250|ref|YP_003645493.1| hypothetical protein Tpau_0513 ... 52.8 5e-05 gi|326384115|ref|ZP_08205798.1| hypothetical protein SCNU_14329 ... 48.5 0.001 gi|296165723|ref|ZP_06848238.1| conserved hypothetical protein [... 44.3 0.019 gi|120401701|ref|YP_951530.1| hypothetical protein Mvan_0686 [My... 44.3 0.020 gi|262203913|ref|YP_003275121.1| hypothetical protein Gbro_4062 ... 38.5 1.0 gi|303321466|ref|XP_003070727.1| peroxisomal membrane protein PA... 36.6 3.7 gi|320040193|gb|EFW22126.1| peroxisomal membrane protein Pex13 [... 36.6 3.8 gi|269954828|ref|YP_003324617.1| serine/threonine protein kinase... 36.6 4.4 gi|302535587|ref|ZP_07287929.1| conserved hypothetical protein [... 36.6 4.5 gi|226315188|ref|YP_002775084.1| hypothetical protein BBR47_5603... 35.8 6.6 gi|66570962|emb|CAH10285.1| merzoite surface protein 1 [Plasmodi... 35.8 6.7 >gi|15607502|ref|NP_214875.1| hypothetical protein Rv0361 [Mycobacterium tuberculosis H37Rv] gi|15839747|ref|NP_334784.1| hypothetical protein MT0377 [Mycobacterium tuberculosis CDC1551] gi|31791538|ref|NP_854031.1| hypothetical protein Mb0368 [Mycobacterium bovis AF2122/97] 78 more sequence titles Length=275 Score = 562 bits (1448), Expect = 2e-158, Method: Compositional matrix adjust. Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%) Query 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQP 60 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQP Sbjct 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQP 60 Query 61 EAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPP 120 EAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPP Sbjct 61 EAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPP 120 Query 121 RTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIA 180 RTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIA Sbjct 121 RTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIA 180 Query 181 IQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEA 240 IQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEA Sbjct 181 IQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEA 240 Query 241 NVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 NVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN Sbjct 241 NVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 >gi|298523838|ref|ZP_07011247.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298493632|gb|EFI28926.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=239 Score = 487 bits (1254), Expect = 7e-136, Method: Compositional matrix adjust. Identities = 238/239 (99%), Positives = 239/239 (100%), Gaps = 0/239 (0%) Query 37 VPHDAETETVVITTSDNDAAVTQPEAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQ 96 +PHDAETETVVITTSDNDAAVTQPEAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQ Sbjct 1 MPHDAETETVVITTSDNDAAVTQPEAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQ 60 Query 97 APTTPPRMPTGMPPKTAVPQSIPPRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLL 156 APTTPPRMPTGMPPKTAVPQSIPPRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLL Sbjct 61 APTTPPRMPTGMPPKTAVPQSIPPRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLL 120 Query 157 TRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRV 216 TRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRV Sbjct 121 TRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRV 180 Query 217 SAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 SAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN Sbjct 181 SAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 239 >gi|240173044|ref|ZP_04751702.1| hypothetical protein MkanA1_27276 [Mycobacterium kansasii ATCC 12478] Length=272 Score = 382 bits (982), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 202/277 (73%), Positives = 222/277 (81%), Gaps = 7/277 (2%) Query 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSD--NDAAVT 58 M NAPEPDR E+G + AG D G TE PL+P DAETETVVI+TSD ++ Sbjct 1 MPNAPEPDRGDTETGDQSAG----DEGAAGTEGQPLIPDDAETETVVISTSDPKDNPGSA 56 Query 59 QPEAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSI 118 + RERRFTAPGFDAKETQVI T+ E ATEVF T+ P PP G P KTA+PQSI Sbjct 57 NADLPRERRFTAPGFDAKETQVIATSPEPATEVFHTSPVPPGPPPPIGGPP-KTAMPQSI 115 Query 119 PPRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLD 178 PPR +RQR WGW LA+VVIVLA+AAIAILGTVL TRGKHSK+SQE+QVRQ IQS D Sbjct 116 PPRGGKPPLRQRNWGWVLAIVVIVLAVAAIAILGTVLFTRGKHSKVSQEEQVRQTIQSFD 175 Query 179 IAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHA 238 +AIQTGDLT LRS+TCG+TRDGYVDYDER W+ETYRRVSAAKQYPVIASIDQVVVNG HA Sbjct 176 VAIQTGDLTTLRSITCGTTRDGYVDYDERSWSETYRRVSAAKQYPVIASIDQVVVNGQHA 235 Query 239 EANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 EANVTTFMA+DPQVRSTRSLDLQFRDDQWKICQS SN Sbjct 236 EANVTTFMAYDPQVRSTRSLDLQFRDDQWKICQSPSN 272 >gi|118618268|ref|YP_906600.1| hypothetical protein MUL_2842 [Mycobacterium ulcerans Agy99] gi|183980696|ref|YP_001848987.1| hypothetical protein MMAR_0671 [Mycobacterium marinum M] gi|118570378|gb|ABL05129.1| conserved membrane protein [Mycobacterium ulcerans Agy99] gi|183174022|gb|ACC39132.1| conserved membrane protein [Mycobacterium marinum M] Length=271 Score = 372 bits (955), Expect = 4e-101, Method: Compositional matrix adjust. Identities = 202/282 (72%), Positives = 220/282 (79%), Gaps = 18/282 (6%) Query 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQP 60 M NAPEPDR E+ R A GE TES+PL+P D ETETVVI+ +D VT P Sbjct 1 MPNAPEPDRDGTET-------RDAAAGEAGTESFPLIPDDTETETVVISKAD---PVTDP 50 Query 61 E-----AQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVP 115 E AQ ERRFTAPGFDAKETQVI TA E ATEVFQT+QAP P P KTAVP Sbjct 51 EPSGADAQPERRFTAPGFDAKETQVIATAPEPATEVFQTHQAPPAGPPPIGMPP-KTAVP 109 Query 116 QSIPPRTEA--TSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQA 173 QSIPPR +++QR WGW LA+VVIVLALAAIAILGTVLLTR KH +SQED+VRQ Sbjct 110 QSIPPRDSGRPAALKQRNWGWVLAIVVIVLALAAIAILGTVLLTRNKHPNVSQEDRVRQT 169 Query 174 IQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVV 233 IQ D A+QTGDLTALRS+TCG+TRDGYVDYDER W ETYRRVSAAKQYPVIASIDQVVV Sbjct 170 IQHFDAAVQTGDLTALRSITCGTTRDGYVDYDERSWDETYRRVSAAKQYPVIASIDQVVV 229 Query 234 NGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 NG HAEAN+TTFMA+DPQVRSTRSLDLQFRDDQWKICQS S+ Sbjct 230 NGQHAEANITTFMAYDPQVRSTRSLDLQFRDDQWKICQSPSS 271 >gi|254822873|ref|ZP_05227874.1| hypothetical protein MintA_23289 [Mycobacterium intracellulare ATCC 13950] Length=293 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 191/296 (65%), Positives = 213/296 (72%), Gaps = 24/296 (8%) Query 1 MSNAPEPDRS-----------------AGESGSEPAGERSADPGEERTESYPLVPHDAET 43 M N EPDR + E G+E E + G++ TES P+VP+DAET Sbjct 1 MPNPSEPDRGGPPNRPGFDPRESRNDPSDEWGAESGPEAGFETGDDATESVPMVPNDAET 60 Query 44 ETVVITTSDNDAAVTQ-PEA-QRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTP 101 ETVVI D + + PEA QRERRFTAPGFDAKET +I T E ATEVF T P Sbjct 61 ETVVINKPDPRSGPQEVPEAPQRERRFTAPGFDAKETTIISTTPEPATEVFAT---PGQD 117 Query 102 PRMPTGMPPKTAVPQSIPPRTEAT--SVRQRTWGWALAVVVIVLALAAIAILGTVLLTRG 159 G PPK AVPQSIPPR + RQ WGW LA+VVIVLALAAIAILGTVLLTRG Sbjct 118 GTAQFGAPPKAAVPQSIPPRLGGKLRTSRQFNWGWILAIVVIVLALAAIAILGTVLLTRG 177 Query 160 KHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAA 219 KH+ +SQEDQVR I + D+AIQ GDLT LR++TCG+TRDGY DYDER W ETYRRVSAA Sbjct 178 KHTGVSQEDQVRHTIGNFDVAIQRGDLTTLRTITCGTTRDGYADYDERSWDETYRRVSAA 237 Query 220 KQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 KQYPVIASIDQVVVNG HAEANVTTFMA+DPQVRSTRSLDLQ+RDDQWKICQS+S Sbjct 238 KQYPVIASIDQVVVNGQHAEANVTTFMAYDPQVRSTRSLDLQYRDDQWKICQSASG 293 >gi|342859136|ref|ZP_08715790.1| hypothetical protein MCOL_09668 [Mycobacterium colombiense CECT 3035] gi|342133377|gb|EGT86580.1| hypothetical protein MCOL_09668 [Mycobacterium colombiense CECT 3035] Length=290 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 181/274 (67%), Positives = 205/274 (75%), Gaps = 6/274 (2%) Query 6 EPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQ-PEA-Q 63 +P S E E E D G + TES P+VP D+ETETVVI D + + P+ Q Sbjct 19 DPRESRNEPSDEWGAESGFDSGGDATESVPMVPGDSETETVVINRPDPHSGPQETPDGPQ 78 Query 64 RERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPPRTE 123 RERRFTAPGFDAKET +I T E ATEVF T P G+PPK AVPQSIPPR Sbjct 79 RERRFTAPGFDAKETAIISTTAEPATEVFAT--PPGQDGTAQFGVPPKPAVPQSIPPRLG 136 Query 124 AT--SVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAI 181 + RQ WGW LA+VVIVLALAAIAILGTVLLTRGKH+ +SQEDQVR IQ+ D+AI Sbjct 137 GKLRTSRQINWGWVLALVVIVLALAAIAILGTVLLTRGKHTNVSQEDQVRHTIQNFDVAI 196 Query 182 QTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEAN 241 Q GDLT LR++TCG+TRDGY DYDE W ETYRRVSAAKQYPVIASIDQVVVNG HAEAN Sbjct 197 QRGDLTTLRTITCGTTRDGYADYDEHAWDETYRRVSAAKQYPVIASIDQVVVNGQHAEAN 256 Query 242 VTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 VTTFMA+DPQ+RSTRS+DLQ+RDDQWK+CQS+S Sbjct 257 VTTFMAYDPQLRSTRSMDLQYRDDQWKVCQSASG 290 >gi|254777220|ref|ZP_05218736.1| hypothetical protein MaviaA2_21484 [Mycobacterium avium subsp. avium ATCC 25291] Length=293 Score = 344 bits (883), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 184/271 (68%), Positives = 204/271 (76%), Gaps = 17/271 (6%) Query 13 ESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQ-PEA-QRERRFTA 70 E+G EP G D E+ TES P+VP DAETETVVI D + + P+ QRERRFTA Sbjct 32 ETGEEPDG--GFDSSEDATESVPMVPSDAETETVVINKPDPPSGPQETPDGPQRERRFTA 89 Query 71 PGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPT----GMPPKTAVPQSIPPRT--EA 124 PGFDAKET +I T E ATE F PP G+PPK AVPQSIPPR + Sbjct 90 PGFDAKETTIIATTPEPATEAF-------VPPGQDNTTQFGVPPKAAVPQSIPPRLGGKL 142 Query 125 TSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTG 184 + RQ WGW LA+VVIVLALAAIAILGTVLLTRG+H+ +SQEDQVR I + D AIQ G Sbjct 143 RTSRQFNWGWILALVVIVLALAAIAILGTVLLTRGRHTNVSQEDQVRHTIGNFDAAIQRG 202 Query 185 DLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTT 244 DLT LRS+TCG+TRDGY DYDE WAETYRRVSAAKQYPVIASIDQVVVNG HAEANVTT Sbjct 203 DLTTLRSITCGTTRDGYADYDEHAWAETYRRVSAAKQYPVIASIDQVVVNGQHAEANVTT 262 Query 245 FMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 FMA+DPQVRSTRSLDLQ+RDDQWKICQS+S Sbjct 263 FMAYDPQVRSTRSLDLQYRDDQWKICQSASG 293 >gi|41409961|ref|NP_962797.1| hypothetical protein MAP3863c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398794|gb|AAS06413.1| hypothetical protein MAP_3863c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460397|gb|EGO39297.1| hypothetical protein MAPs_41950 [Mycobacterium avium subsp. paratuberculosis S397] Length=293 Score = 344 bits (883), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 184/271 (68%), Positives = 204/271 (76%), Gaps = 17/271 (6%) Query 13 ESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQ-PEA-QRERRFTA 70 E+G EP G D E+ TES P+VP DAETETVVI D + + P+ QRERRFTA Sbjct 32 ETGEEPDG--GFDSSEDATESVPMVPSDAETETVVINKPDPPSGPQETPDGPQRERRFTA 89 Query 71 PGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPT----GMPPKTAVPQSIPPRT--EA 124 PGFDAKET +I T E ATE F PP G+PPK AVPQSIPPR + Sbjct 90 PGFDAKETTIIATTPEPATEAF-------VPPGQDNTTQFGVPPKAAVPQSIPPRLGGKL 142 Query 125 TSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTG 184 + RQ WGW LA+VVIVLALAAIAILGTVLLTRG+H+ +SQEDQVR I + D AIQ G Sbjct 143 RTSRQINWGWILALVVIVLALAAIAILGTVLLTRGRHTNVSQEDQVRHTIGNFDAAIQRG 202 Query 185 DLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTT 244 DLT LRS+TCG+TRDGY DYDE WAETYRRVSAAKQYPVIASIDQVVVNG HAEANVTT Sbjct 203 DLTTLRSITCGTTRDGYADYDEHAWAETYRRVSAAKQYPVIASIDQVVVNGQHAEANVTT 262 Query 245 FMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 FMA+DPQVRSTRSLDLQ+RDDQWKICQS+S Sbjct 263 FMAYDPQVRSTRSLDLQYRDDQWKICQSASG 293 >gi|118467008|ref|YP_883911.1| hypothetical protein MAV_4784 [Mycobacterium avium 104] gi|118168295|gb|ABK69192.1| conserved hypothetical protein [Mycobacterium avium 104] Length=292 Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 183/271 (68%), Positives = 204/271 (76%), Gaps = 18/271 (6%) Query 13 ESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQ-PEA-QRERRFTA 70 E+G EP G + E+ TES P+VP DAETETVVI D + + P+ QRERRFTA Sbjct 32 ETGEEPDGGFDS---EDATESVPMVPSDAETETVVINKPDPPSGPQETPDGPQRERRFTA 88 Query 71 PGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPT----GMPPKTAVPQSIPPRT--EA 124 PGFDAKET +I T E ATE F PP G+PPK AVPQSIPPR + Sbjct 89 PGFDAKETTIIATTPEPATEAF-------VPPGQDNTTQFGVPPKAAVPQSIPPRLGGKL 141 Query 125 TSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTG 184 + RQ WGW LA+VVIVLALAAIAILGTVLLTRG+H+ +SQEDQVR I + D AIQ G Sbjct 142 RTSRQINWGWILALVVIVLALAAIAILGTVLLTRGRHTNVSQEDQVRHTIGNFDAAIQRG 201 Query 185 DLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTT 244 DLT LRS+TCG+TRDGY DYDE WAETYRRVSAAKQYPVIASIDQVVVNG HAEANVTT Sbjct 202 DLTTLRSITCGTTRDGYADYDEHAWAETYRRVSAAKQYPVIASIDQVVVNGQHAEANVTT 261 Query 245 FMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 FMA+DPQVRSTRSLDLQ+RDDQWKICQS+S Sbjct 262 FMAYDPQVRSTRSLDLQYRDDQWKICQSASG 292 >gi|15827062|ref|NP_301325.1| hypothetical protein ML0285 [Mycobacterium leprae TN] gi|221229540|ref|YP_002502956.1| hypothetical protein MLBr_00285 [Mycobacterium leprae Br4923] gi|3129997|emb|CAA18949.1| putative membrane protein [Mycobacterium leprae] gi|13092610|emb|CAC29793.1| putative membrane protein [Mycobacterium leprae] gi|219932647|emb|CAR70378.1| putative membrane protein [Mycobacterium leprae Br4923] Length=292 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 161/251 (65%), Positives = 188/251 (75%), Gaps = 3/251 (1%) Query 27 GEERTESYPLVPHDAETETVVITTSDNDAAVTQPEAQRERRFTAPGFDAKETQVIVTAHE 86 GEE YPL D+ETE +V+T ++ D ERRFTAPGFDA+ T ++ TA + Sbjct 43 GEEIAAGYPLAHSDSETEAMVLTKTEPDQDPGADRQHHERRFTAPGFDARATAIMATAPD 102 Query 87 AATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPP--RTEATSVRQRTWGWALAVVVIVLA 144 ATE + + PP G+ PK AVPQSIPP T+ S R WGW +A++++VLA Sbjct 103 PATEAIHPPLSSSDPPGH-LGISPKAAVPQSIPPVLGTKLRSARHFHWGWVVALLMMVLA 161 Query 145 LAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDY 204 LAAIAILGTVLLTRGKH K S +QVR AIQS D+A+QTG+LTALRS+TCG+TRDGYV+Y Sbjct 162 LAAIAILGTVLLTRGKHVKASPAEQVRHAIQSFDVAVQTGNLTALRSITCGTTRDGYVEY 221 Query 205 DERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRD 264 DE W ETY RVSAAKQYPVIASIDQVVVNG HAEAN+TTFMA+DPQVRSTRSLDLQF D Sbjct 222 DESSWDETYHRVSAAKQYPVIASIDQVVVNGQHAEANITTFMAYDPQVRSTRSLDLQFCD 281 Query 265 DQWKICQSSSN 275 DQWKICQS S Sbjct 282 DQWKICQSPSG 292 >gi|296167839|ref|ZP_06850023.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897010|gb|EFG76632.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=276 Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 185/281 (66%), Positives = 205/281 (73%), Gaps = 11/281 (3%) Query 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVI----TTSDNDAA 56 M PEPDR G + + P E +A GE+ TES PLVP D+ETETVVI + D Sbjct 1 MPQPPEPDR--GGAPNTPGHEWAAPSGEDATESVPLVPSDSETETVVIRPDAGGNPADPG 58 Query 57 VTQPEAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQ 116 QRERRFTAPGFDAKET VI T E ATEVF + P P P G P K AVPQ Sbjct 59 EYADGQQRERRFTAPGFDAKETAVISTTQEPATEVFAS--PPGGMPAQP-GTPAKPAVPQ 115 Query 117 SIPPRTEAT--SVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAI 174 SIPPR + RQ WGW LA+V++VLALAAIAILGTVLLTR KH+K+SQEDQVR I Sbjct 116 SIPPRLGGKLRTSRQFNWGWVLALVLVVLALAAIAILGTVLLTRSKHTKVSQEDQVRTTI 175 Query 175 QSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVN 234 +S D AIQ GDLT LR++TCG+TRDGY DYDE W ETYRRVSAAKQYPVIASIDQVVVN Sbjct 176 ESFDTAIQKGDLTTLRTITCGTTRDGYADYDEHAWDETYRRVSAAKQYPVIASIDQVVVN 235 Query 235 GAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN 275 G HAEANVTTFMA+DP +RSTRSLDLQ+RDD WKICQS S Sbjct 236 GQHAEANVTTFMAYDPSLRSTRSLDLQYRDDHWKICQSPSG 276 >gi|118473560|ref|YP_885159.1| hypothetical protein MSMEG_0753 [Mycobacterium smegmatis str. MC2 155] gi|118174847|gb|ABK75743.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=266 Score = 255 bits (651), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 148/280 (53%), Positives = 179/280 (64%), Gaps = 25/280 (8%) Query 1 MSNAPEPDRS---AGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAV 57 M N EP+ + E +EP+ + + P E+ T S H+ TE + T A Sbjct 1 MPNPSEPNEDHTPSSEDPTEPSRQSADAPTEKVTLSSE---HEPATEVFGLPTEPGQAT- 56 Query 58 TQPEAQRERRFTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQS 117 P+ ERRFTAP TQ I T + TEVF AP P G P K PQ Sbjct 57 --PQGD-ERRFTAPSSFDGSTQKIDTPPDPETEVF----AP------PPGDPNKPVAPQV 103 Query 118 IPPRTEAT-----SVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQ 172 IPPR +A + +R+WGW +AVV+++ AL AIAILGTVLLTR S SQED+VR+ Sbjct 104 IPPRDDAARPQAPATARRSWGWVIAVVLVIAALVAIAILGTVLLTRDSASAGSQEDRVRE 163 Query 173 AIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVV 232 IQ D AIQ GDL LRS+TCG+TRD YV+Y+E+ WAET+ RV+AAKQYPV+ASIDQV+ Sbjct 164 TIQKFDSAIQRGDLATLRSITCGTTRDNYVNYNEKAWAETHERVAAAKQYPVVASIDQVI 223 Query 233 VNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQS 272 VN HAEANVTTFMAF PQ RSTRS DLQFRDD+WKICQS Sbjct 224 VNDDHAEANVTTFMAFAPQTRSTRSFDLQFRDDEWKICQS 263 >gi|108797484|ref|YP_637681.1| hypothetical protein Mmcs_0504 [Mycobacterium sp. MCS] gi|119866569|ref|YP_936521.1| hypothetical protein Mkms_0515 [Mycobacterium sp. KMS] gi|126433105|ref|YP_001068796.1| hypothetical protein Mjls_0493 [Mycobacterium sp. JLS] gi|108767903|gb|ABG06625.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692658|gb|ABL89731.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126232905|gb|ABN96305.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=277 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/248 (57%), Positives = 169/248 (69%), Gaps = 23/248 (9%) Query 40 DAETETVVITTSDNDAAVTQPEAQRERRFTAP-GFDAKETQVIVTAHEAATEVFQTNQAP 98 D E T VI +S A +P ++ ERRFTAP GFDA TQ I + ATEVF Sbjct 39 DHEPATEVIASSSPGADQFEP-SEGERRFTAPSGFDAGSTQKIDPPPDPATEVF------ 91 Query 99 TTPPRMPTGMPP---------KTAVPQSIPPRTEATSVRQ---RTWGWALAVVVIVLALA 146 PR G+P K A PQ IPPR +A Q R+WGW +AVV+++ AL Sbjct 92 ---PRSEGGLPGSGTDPFAAQKAAGPQVIPPRGDAPRPPQQGRRSWGWVVAVVLVIAALV 148 Query 147 AIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDE 206 AIAILGT+LLTRG S SQEDQVR I+ D+AIQ GDL LR +TCG+ RD YV+YD+ Sbjct 149 AIAILGTILLTRGSGSTASQEDQVRATIEQFDVAIQNGDLATLRGITCGAKRDSYVNYDD 208 Query 207 RDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQ 266 + WAET++RV+AAKQYPV+ASIDQ+VVNG HAEANVT FMA+ PQ RSTRS DL+FRDDQ Sbjct 209 KAWAETHKRVAAAKQYPVVASIDQIVVNGDHAEANVTAFMAYAPQTRSTRSFDLEFRDDQ 268 Query 267 WKICQSSS 274 WKICQ+ S Sbjct 269 WKICQAPS 276 >gi|120401686|ref|YP_951515.1| hypothetical protein Mvan_0671 [Mycobacterium vanbaalenii PYR-1] gi|119954504|gb|ABM11509.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=262 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 142/277 (52%), Positives = 175/277 (64%), Gaps = 22/277 (7%) Query 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQP 60 MSNA PD S DP E+ L D+E E + + P Sbjct 1 MSNAGGPDNS------------DQDPSSAEPETEVLSGADSEHEPATEVFAPAEQQDEDP 48 Query 61 EAQRERRFTAP-GFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGM--PPKTAVPQS 117 + ERRFTAP GFDA TQVI + ATE F + P PT P K A PQ Sbjct 49 DQPGERRFTAPSGFDAGSTQVINRPTDPATEQFSVHD-----PGAPTEAFAPQKPAAPQM 103 Query 118 IPPRTEATS--VRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQ 175 IPPR +A ++R WGW +A+V++V ALAA+AILGTVLLTRG S +SQED+VR I+ Sbjct 104 IPPRGDAPRPPKKKRNWGWVVAIVLVVAALAAVAILGTVLLTRGSGSSVSQEDRVRSTIE 163 Query 176 SLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNG 235 + D AI+ GDL LRS+TCG+T + Y + D++ W ET+RRV+ A +YPV+ASIDQ+VVNG Sbjct 164 NYDAAIEKGDLATLRSITCGTTAEAYNNIDDKKWIETHRRVADAGRYPVVASIDQIVVNG 223 Query 236 AHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQS 272 HAEANVTTFMAF PQ RSTRS DLQFRDD+WKICQ+ Sbjct 224 DHAEANVTTFMAFAPQTRSTRSFDLQFRDDEWKICQA 260 >gi|315442208|ref|YP_004075087.1| hypothetical protein Mspyr1_05430 [Mycobacterium sp. Spyr1] gi|315260511|gb|ADT97252.1| hypothetical protein Mspyr1_05430 [Mycobacterium sp. Spyr1] Length=253 Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 136/273 (50%), Positives = 175/273 (65%), Gaps = 23/273 (8%) Query 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQP 60 MSNAP PD GE + A+ E TE P + E T V ++ Sbjct 1 MSNAPGPD---GED------DAPAESSEAETEVLPGTDAEHEPATEVFAPAEPQDGDPSD 51 Query 61 EAQRERRFTAP-GFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIP 119 +A ERRFTAP GFDA TQVI HE TE F ++ P P +PP+ P+ P Sbjct 52 DAG-ERRFTAPSGFDAGSTQVINRPHELPTEAFAAHK-----PAAPQMIPPRGETPK--P 103 Query 120 PRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDI 179 P+T +R WGW +A+++++ ALAA A++GT+LLTRG + +SQED VR AIQ+ D Sbjct 104 PKT-----GRRNWGWVIAIILVIAALAAAAVVGTLLLTRGSATSVSQEDSVRTAIQNYDA 158 Query 180 AIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAE 239 AI+ GDL LRS+TCG+T + Y +DER W +T+ RV+ A +YPV+ASID++V+NG HAE Sbjct 159 AIEKGDLATLRSITCGATAESYNKFDERQWKDTHSRVAEAGRYPVVASIDEIVINGDHAE 218 Query 240 ANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQS 272 ANVTTFMAF PQ RSTRS DLQFRDDQWKICQ+ Sbjct 219 ANVTTFMAFAPQTRSTRSFDLQFRDDQWKICQA 251 >gi|145220838|ref|YP_001131516.1| hypothetical protein Mflv_0233 [Mycobacterium gilvum PYR-GCK] gi|145213324|gb|ABP42728.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=259 Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 136/273 (50%), Positives = 175/273 (65%), Gaps = 23/273 (8%) Query 1 MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQP 60 MSNAP PD GE + A+ E TE P + E T V ++ Sbjct 7 MSNAPGPD---GED------DAPAESSEAETEVLPGTDAEHEPATEVFAPAEPQDGDPSD 57 Query 61 EAQRERRFTAP-GFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIP 119 +A ERRFTAP GFDA TQVI HE TE F ++ P P +PP+ P+ P Sbjct 58 DAG-ERRFTAPSGFDAGSTQVINRPHELPTEAFAAHK-----PAAPQMIPPRGETPK--P 109 Query 120 PRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDI 179 P+T +R WGW +A+++++ ALAA A++GT+LLTRG + +SQED VR AIQ+ D Sbjct 110 PKT-----GRRNWGWVIAIILVIAALAAAAVVGTLLLTRGSATSVSQEDSVRTAIQNYDA 164 Query 180 AIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAE 239 AI+ GDL LRS+TCG+T + Y +DER W +T+ RV+ A +YPV+ASID++V+NG HAE Sbjct 165 AIEKGDLATLRSITCGATAESYNKFDERQWKDTHSRVAEAGRYPVVASIDEIVINGDHAE 224 Query 240 ANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQS 272 ANVTTFMAF PQ RSTRS DLQFRDDQWKICQ+ Sbjct 225 ANVTTFMAFAPQTRSTRSFDLQFRDDQWKICQA 257 >gi|333988998|ref|YP_004521612.1| hypothetical protein JDM601_0358 [Mycobacterium sp. JDM601] gi|333484966|gb|AEF34358.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=296 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 129/241 (54%), Positives = 161/241 (67%), Gaps = 25/241 (10%) Query 40 DAETETVVITTSDNDAAVT----QPEAQRERRFTAPGFDAKETQVIVTAHEAATEVF--Q 93 D + T VITT +AA T P+ ERRFTAPGFD T+V+ + +A TE+ Q Sbjct 70 DGDAVTEVITT---EAAPTTTDSSPDGPPERRFTAPGFDGA-TEVMPSVGDADTELIARQ 125 Query 94 TNQAPTTPPRMPTGMPPKTAVPQSIPPRTEA--TSVRQRTWGWALAVVVIVLALAAIAIL 151 A A+PQ IPPR + R+WGW LA+++I++ LA +A+L Sbjct 126 AGDA-------------GKAIPQQIPPRLGGRLPATVSRSWGWVLALILIIVVLAVVAVL 172 Query 152 GTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAE 211 GT+ LTR SQE++VR I + DIA+Q GDL ALRSLTCG RD YV+YD++ W E Sbjct 173 GTLWLTRDDRQAASQEERVRGTILNFDIAMQNGDLAALRSLTCGDIRDRYVNYDQKAWDE 232 Query 212 TYRRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQ 271 TYRR++AAKQYPV+ASID+VVVN HAEANVT FMA+ P+VRSTRS DLQFRDDQWKICQ Sbjct 233 TYRRIAAAKQYPVVASIDEVVVNDGHAEANVTAFMAYAPRVRSTRSFDLQFRDDQWKICQ 292 Query 272 S 272 S Sbjct 293 S 293 >gi|169631331|ref|YP_001704980.1| hypothetical protein MAB_4253 [Mycobacterium abscessus ATCC 19977] gi|169243298|emb|CAM64326.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=262 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/264 (49%), Positives = 174/264 (66%), Gaps = 28/264 (10%) Query 13 ESGSEPAGERSA---DPGEERTESYPLVPHDAETETVVITTSDNDAAVTQPEAQRERRFT 69 ES +P G +A E+ T++ P+ P D + +TVV+ + D R+T Sbjct 22 ESAEQPEGAANAPEVSDTEDNTDTGPVPPLD-DAQTVVMAPAKPDVP----------RYT 70 Query 70 APGFDAKETQVI-VTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPPRTEATSVR 128 APGFDA +T++I + TE Q + T PK A P++I PR E Sbjct 71 APGFDANKTEMIDPVGDDPKTEFIQP---------LATQARPKAATPETIAPRKE----E 117 Query 129 QRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTA 188 +R+WGW +A+ ++V ALAA+ +L V+++R K SQE+ VR +IQ+ D AIQTG+L A Sbjct 118 KRSWGWVIALALVVAALAAVIVLAAVIISRTSTPKASQEELVRNSIQNYDNAIQTGNLAA 177 Query 189 LRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAF 248 LR++TCG TRDGYV Y + +W++TY++V+AAKQYPV+ASID+VVVNG HAEANVT+FMAF Sbjct 178 LRTITCGETRDGYVRYPDGEWSQTYQKVAAAKQYPVVASIDEVVVNGEHAEANVTSFMAF 237 Query 249 DPQVRSTRSLDLQFRDDQWKICQS 272 PQ RS+RS DLQFRD+QWKICQS Sbjct 238 APQTRSSRSFDLQFRDNQWKICQS 261 >gi|312141297|ref|YP_004008633.1| membrane protein [Rhodococcus equi 103S] gi|325673869|ref|ZP_08153559.1| hypothetical protein HMPREF0724_11341 [Rhodococcus equi ATCC 33707] gi|311890636|emb|CBH49954.1| putative membrane protein [Rhodococcus equi 103S] gi|325555134|gb|EGD24806.1| hypothetical protein HMPREF0724_11341 [Rhodococcus equi ATCC 33707] Length=175 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/177 (35%), Positives = 86/177 (49%), Gaps = 10/177 (5%) Query 95 NQAPTTPPRMPTGMPPKTAVPQSIPPRTEATSVRQRTWGWALA-VVVIVLALAAIAILGT 153 N PT+P P + P P T+ R GW +A + +V LAA+ + G Sbjct 5 NDNPTSPAAGPQRIRPTA-------PSTKKDRRRGGNRGWIVASTLAVVGVLAALGVTGF 57 Query 154 VLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETY 213 V+ G E +VR A+ + A+ +G+L AL+S TCG+ D Y D D+A + Sbjct 58 VIARTGAQDP--DESRVRNAVDTFAQALDSGNLGALQSSTCGTLADFYRDIPPTDFAGVH 115 Query 214 RRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKIC 270 R V A PV+ S+D V + G A A VT DP S R+LDL+ D WK+C Sbjct 116 RDVVAHGGVPVVTSVDTVQITGDTAIAQVTAHTEADPSDASPRTLDLERVDGTWKVC 172 >gi|54027352|ref|YP_121594.1| hypothetical protein nfa53780 [Nocardia farcinica IFM 10152] gi|54018860|dbj|BAD60230.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=268 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/117 (35%), Positives = 58/117 (50%), Gaps = 4/117 (3%) Query 154 VLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETY 213 + L RG S EDQVR AI + A+ GDL ALR TCG + Y + +A + Sbjct 149 MALLRGD----SPEDQVRAAIDNYTSALHDGDLAALRESTCGPLHEFYRNITPEQFASVH 204 Query 214 RRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKIC 270 ++ + PV+ +D + + A A T + DP RS R+ DL+ D WK+C Sbjct 205 QQSRERRSIPVVDGVDAIKITDNTALAQATVYTEADPGNRSARTFDLEKTDSGWKVC 261 >gi|226365021|ref|YP_002782804.1| hypothetical protein ROP_56120 [Rhodococcus opacus B4] gi|226243511|dbj|BAH53859.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=381 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/163 (27%), Positives = 78/163 (48%), Gaps = 2/163 (1%) Query 108 MPPKTAVPQSIPPRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQE 167 +PP+ + PQ + ++ W A + + + A + +++ ++ S E Sbjct 218 LPPQQSAPQRV--AAAEKPAKKHGKAWLFAAIAAGVIVVAAIAVAGIVVYNNNQAENSPE 275 Query 168 DQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIAS 227 QV+ I + A+ GDL LR+ TCGS + Y ++D+AE ++ + PV+ Sbjct 276 AQVQGTIDTFVAALAQGDLATLRTSTCGSLAEYYQGISDQDFAEVHQVAVTQQNIPVVGG 335 Query 228 IDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKIC 270 +D V + G A A V A +P +S R+ +L+ D WKIC Sbjct 336 VDAVQITGDTAIAQVKAHTAANPSEQSWRTFNLEKVDGTWKIC 378 >gi|111022503|ref|YP_705475.1| hypothetical protein RHA1_ro05537 [Rhodococcus jostii RHA1] gi|110822033|gb|ABG97317.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=588 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/110 (34%), Positives = 58/110 (53%), Gaps = 0/110 (0%) Query 161 HSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAK 220 ++ S E QV+ I + A+ GDL LR+ TCGS + Y ++D+AE ++ + Sbjct 476 QAENSPEAQVQGTIDTFVAALTQGDLATLRTSTCGSLAEYYQGISDQDFAEVHQVAVNQQ 535 Query 221 QYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKIC 270 PV+ +D V + G A A V A +P +S R+ +L+ D WKIC Sbjct 536 NIPVVGGVDAVQITGDSAIAQVKAHTAANPGEQSWRTFNLEKVDGTWKIC 585 >gi|343928554|ref|ZP_08768001.1| hypothetical protein GOALK_118_00450 [Gordonia alkanivorans NBRC 16433] gi|343761565|dbj|GAA14927.1| hypothetical protein GOALK_118_00450 [Gordonia alkanivorans NBRC 16433] Length=700 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/159 (28%), Positives = 71/159 (45%), Gaps = 5/159 (3%) Query 115 PQSIPPRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAI 174 PQ IP + ++R G +AV I++ +AA+ +G + + + D+ + Sbjct 543 PQVIPGSRPTRTTKKRGMGPLIAVAAILVVIAAV--IGGIFAYQ-NMTATPPADEAAEVA 599 Query 175 QSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASID--QVV 232 A+ GDL LRS+TCG Y D+D+ + +TY A + +I+ +VV Sbjct 600 LDYTTALYEGDLETLRSVTCGELHAFYEDFDDAAYQKTYDAQKARNELVQTQAINAVRVV 659 Query 233 VNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQ 271 G A V P T +L+LQ D WK+C Sbjct 660 EGGELAVVEVVAVHTSAPDAPETVTLNLQREGDDWKVCN 698 >gi|229493098|ref|ZP_04386893.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229320128|gb|EEN85954.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=284 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/107 (33%), Positives = 56/107 (53%), Gaps = 1/107 (0%) Query 167 EDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIA 226 E QV+ AI + A+QTGDL LR+ TCG+ + Y + +A+ + A K P + Sbjct 178 EAQVQTAISTYVDALQTGDLATLRTSTCGALGEYYRTIPDAAFAQVHDNAVAQKTIPQVG 237 Query 227 SIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSS 273 ++D V + A A V + + +S R+ DL+ +D WK+C S Sbjct 238 AVDAVRITDDTAIAQVQASLPSTGE-QSWRTFDLERQDGTWKVCDPS 283 >gi|226304902|ref|YP_002764860.1| hypothetical protein RER_14130 [Rhodococcus erythropolis PR4] gi|226184017|dbj|BAH32121.1| hypothetical protein RER_14130 [Rhodococcus erythropolis PR4] Length=307 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/107 (33%), Positives = 56/107 (53%), Gaps = 1/107 (0%) Query 167 EDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIA 226 E QV+ AI + A+QTGDL LR+ TCG+ + Y + +A+ + A K P + Sbjct 201 EAQVQTAISTYVDALQTGDLATLRTSTCGALGEYYRTIPDAAFAQVHDNAVAQKTIPQVG 260 Query 227 SIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSS 273 ++D V + A A V + + +S R+ DL+ +D WK+C S Sbjct 261 AVDAVRITDDTAIAQVQASLPSTGE-QSWRTFDLERQDGTWKVCDPS 306 >gi|296138250|ref|YP_003645493.1| hypothetical protein Tpau_0513 [Tsukamurella paurometabola DSM 20162] gi|296026384|gb|ADG77154.1| hypothetical protein Tpau_0513 [Tsukamurella paurometabola DSM 20162] Length=575 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/176 (28%), Positives = 77/176 (44%), Gaps = 11/176 (6%) Query 102 PRMPTGMPPKTAVPQSIPPRTEATSVRQ---RTWGWALAVVVIVLALAAIAILGTVLLTR 158 P +P P + +VP+ P T+ Q W W A VV+V+A +L L++ Sbjct 398 PALPADNPTERSVPEYYAPTTQRPLPEQSGGNRWKWIAAGVVVVIAAIVGIVL---LVSG 454 Query 159 GKHSKMSQEDQVRQAIQSLDI--AIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRV 216 G + +V+ A + D AI +GDL ALR+ TCG+ + Y ++ + Sbjct 455 GAGGADQTDPRVQAATSTTDFVGAINSGDLNALRAQTCGAAKQYYDRISTDEYQRVHDNA 514 Query 217 SAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDD--QWKIC 270 A P + + + VNG AE V P + +L L +D+ WK+C Sbjct 515 KADGLLPELDGLQAIDVNGDRAEVQVEVHYTGQPDAKVKNTLTL-AKDEAGAWKVC 569 >gi|326384115|ref|ZP_08205798.1| hypothetical protein SCNU_14329 [Gordonia neofelifaecis NRRL B-59395] gi|326197275|gb|EGD54466.1| hypothetical protein SCNU_14329 [Gordonia neofelifaecis NRRL B-59395] Length=351 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/107 (27%), Positives = 46/107 (43%), Gaps = 0/107 (0%) Query 165 SQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPV 224 S E +V +A + A+ +GDL LR +TCG Y + + + Y + Sbjct 243 SPEHKVAEAAKDYQNAMTSGDLDKLREVTCGEEYAYYSKIPDAAFQKAYEAQKNRNELMT 302 Query 225 IASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQ 271 + V +NG A V + + DP + + LQ D WK+C+ Sbjct 303 FDDVKAVEINGDTARVGVDMYPSNDPSKTAPAQITLQNVDGTWKVCK 349 >gi|296165723|ref|ZP_06848238.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898896|gb|EFG78387.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=150 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/113 (32%), Positives = 53/113 (47%), Gaps = 18/113 (15%) Query 165 SQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGY----VDYDERDWAETYRRVSAAK 220 S EDQVR+ + + A T + TA L C + R + +DY ++ R S Sbjct 51 SAEDQVRETVTAFQDAYNTQNWTAYTELMCVAMRAKFTGPVLDYVKKG-----RSESGLT 105 Query 221 QYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFR-DDQWKICQS 272 SI V VNG A A++T+ + TRS+ L + +D WKICQ+ Sbjct 106 H----VSITSVTVNGDTATASMTS----SNEALGTRSVSLPLKLEDGWKICQT 150 >gi|120401701|ref|YP_951530.1| hypothetical protein Mvan_0686 [Mycobacterium vanbaalenii PYR-1] gi|119954519|gb|ABM11524.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=147 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/141 (22%), Positives = 58/141 (42%), Gaps = 5/141 (3%) Query 133 GWALAVVVIVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSL 192 G A+A + L++ ++G L ++ E + +A + A+Q D L++ Sbjct 10 GRAVAPFLGALSIIVAVVIGIWLFNLFSGDGLTDEQLIARAASGQNDALQRADYADLQAF 69 Query 193 TCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQV 252 TC R DE + + R + + + VVV+G A A++T + DP Sbjct 70 TCTEAR-----ADEAEVLDRQRDSVEKRGNRFVERVAGVVVDGDRASADITYYFEKDPDA 124 Query 253 RSTRSLDLQFRDDQWKICQSS 273 + T + WK+C + Sbjct 125 KETLEMTFAREGGTWKVCSTG 145 >gi|262203913|ref|YP_003275121.1| hypothetical protein Gbro_4062 [Gordonia bronchialis DSM 43247] gi|262087260|gb|ACY23228.1| hypothetical protein Gbro_4062 [Gordonia bronchialis DSM 43247] Length=694 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/91 (26%), Positives = 38/91 (42%), Gaps = 0/91 (0%) Query 180 AIQTGDLTALRSLTCGSTRDGYVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAE 239 A+ +GDL LR +TCG + Y + + + + I V V+G A Sbjct 601 ALSSGDLNTLREVTCGREQAFYQSQQPDQYQKIFNAQRDRNELIKFGEIKAVRVDGNTAV 660 Query 240 ANVTTFMAFDPQVRSTRSLDLQFRDDQWKIC 270 + PQ + +++LQ D WK+C Sbjct 661 VELPVAPGNRPQEQELTTINLQKSGDDWKVC 691 >gi|303321466|ref|XP_003070727.1| peroxisomal membrane protein PAS20, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110424|gb|EER28582.1| peroxisomal membrane protein PAS20, putative [Coccidioides posadasii C735 delta SOWgp] Length=449 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 31/98 (32%), Positives = 46/98 (47%), Gaps = 17/98 (17%) Query 172 QAIQSLDIAIQTGDLTALRSLT--CGS--------TRDGYVDYDERDWAETYRRVSAAKQ 221 QA +D+A++ GD+ A+ S T GS RDG V Y + +T +R Q Sbjct 324 QAAVGIDLAVRKGDIVAVLSKTDPMGSPSEWWRCRARDGSVGYLPGPYLQTIQR---KPQ 380 Query 222 YPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLD 259 I +D NG + A + TF AF Q ++T+ D Sbjct 381 QRAITEVD----NGPVSAAQINTFEAFPEQTKATKGED 414 >gi|320040193|gb|EFW22126.1| peroxisomal membrane protein Pex13 [Coccidioides posadasii str. Silveira] Length=449 Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust. Identities = 31/98 (32%), Positives = 46/98 (47%), Gaps = 17/98 (17%) Query 172 QAIQSLDIAIQTGDLTALRSLT--CGS--------TRDGYVDYDERDWAETYRRVSAAKQ 221 QA +D+A++ GD+ A+ S T GS RDG V Y + +T +R Q Sbjct 324 QAAVGIDLAVRKGDIVAVLSKTDPMGSPSEWWRCRARDGSVGYLPGPYLQTIQR---KPQ 380 Query 222 YPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLD 259 I +D NG + A + TF AF Q ++T+ D Sbjct 381 QRAITEVD----NGPVSAAQINTFEAFPEQTKATKGED 414 >gi|269954828|ref|YP_003324617.1| serine/threonine protein kinase with PASTA sensor(s) [Xylanimonas cellulosilytica DSM 15894] gi|269303509|gb|ACZ29059.1| serine/threonine protein kinase with PASTA sensor(s) [Xylanimonas cellulosilytica DSM 15894] Length=693 Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%) Query 68 FTAPGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPPRTEATSV 127 F APGF TQ++ T AAT+ + P P G P A P + +A + Sbjct 314 FGAPGFGEAGTQLL-TPETAATQQWGATGLPQAMPAAGVGGP---AGPTGPSRQEQADAR 369 Query 128 RQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKMS 165 R++T W L + + VLA+AAI T++L G+ +++ Sbjct 370 RKKTLMWTL-ITIGVLAVAAIV---TIILLNGRQQEVA 403 >gi|302535587|ref|ZP_07287929.1| conserved hypothetical protein [Streptomyces sp. C] gi|302444482|gb|EFL16298.1| conserved hypothetical protein [Streptomyces sp. C] Length=584 Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust. Identities = 26/85 (31%), Positives = 40/85 (48%), Gaps = 5/85 (5%) Query 105 PTGMPPKTAVPQSIPPRTEATSVRQRTWGWALAVVVIVLALAAIAILGTVLLTRGKHSKM 164 P G+P AVP PP ++ + R WG A A++++ L L + + T+L HSK Sbjct 360 PVGLPTTQAVPSVPPPPLQSRTGRALKWGVA-ALLIVALGLGSWQLADTLL----DHSKS 414 Query 165 SQEDQVRQAIQSLDIAIQTGDLTAL 189 D + Q + A Q +L L Sbjct 415 GGGDNTQTQQQGPNDAAQKKELKPL 439 >gi|226315188|ref|YP_002775084.1| hypothetical protein BBR47_56030 [Brevibacillus brevis NBRC 100599] gi|226098138|dbj|BAH46580.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length=134 Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust. Identities = 30/130 (24%), Positives = 58/130 (45%), Gaps = 13/130 (10%) Query 146 AAIAILGTVLLTRG-----KHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDG 200 AAI +LG +++T G ++ +++E++V++ +Q A++ GD + T D Sbjct 8 AAILLLGAIVVTGGIWTSNTYASVNEENEVKETVQIYLEALENGDTPTMVEYTIDERFD- 66 Query 201 YVDYDERDWAETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDL 260 +++D + Y K + +D V V E TF + V +L + Sbjct 67 ----NDKDKQKVYESFGTQK---MDIDMDSVSVEKIEDEKMSVTFHYSNEHVSEDITLPV 119 Query 261 QFRDDQWKIC 270 +DQWK+ Sbjct 120 VKENDQWKVV 129 >gi|66570962|emb|CAH10285.1| merzoite surface protein 1 [Plasmodium reichenowi] Length=1739 Score = 35.8 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 25/87 (29%), Positives = 34/87 (40%), Gaps = 5/87 (5%) Query 38 PHDAETETVVITTSDNDAAVTQPEAQRERRFTAPGF-DAKETQVIVTAHEAATEVFQTNQ 96 P + T + + A TQP T P + TQ + T Q + Sbjct 748 PSQPSSATTTPPSQPSSATTTQPPQPSSATTTPPSQPSSATTQPPQPSSATTTPPPQESS 807 Query 97 APTTPPRMP----TGMPPKTAVPQSIP 119 A TTPP P T +PP+ VPQ+ P Sbjct 808 ATTTPPSQPSSATTTLPPQPTVPQAQP 834 Lambda K H 0.313 0.126 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 432410969436 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40