BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0366c
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607507|ref|NP_214880.1| hypothetical protein Rv0366c [Mycob... 395 2e-108
gi|148821562|ref|YP_001286316.1| hypothetical protein TBFG_10371... 393 8e-108
gi|340625396|ref|YP_004743848.1| hypothetical protein MCAN_03671... 390 6e-107
gi|41407874|ref|NP_960710.1| hypothetical protein MAP1776c [Myco... 290 7e-77
gi|342859741|ref|ZP_08716394.1| hypothetical protein MCOL_12708 ... 288 4e-76
gi|315446135|ref|YP_004079014.1| hypothetical protein Mspyr1_462... 268 5e-70
gi|108799627|ref|YP_639824.1| hypothetical protein Mmcs_2660 [My... 265 3e-69
gi|118469358|ref|YP_887740.1| hypothetical protein MSMEG_3436 [M... 263 1e-68
gi|145225774|ref|YP_001136452.1| hypothetical protein Mflv_5198 ... 262 2e-68
gi|296165039|ref|ZP_06847594.1| conserved hypothetical protein [... 261 5e-68
gi|254822142|ref|ZP_05227143.1| hypothetical protein MintA_19564... 247 8e-64
gi|226362189|ref|YP_002779967.1| hypothetical protein ROP_27750 ... 214 5e-54
gi|289756433|ref|ZP_06515811.1| predicted protein [Mycobacterium... 213 1e-53
gi|289748849|ref|ZP_06508227.1| conserved hypothetical protein [... 197 7e-49
gi|289445904|ref|ZP_06435648.1| conserved hypothetical protein [... 189 2e-46
gi|40787300|gb|AAR90217.1| hypothetical protein PDK3.076 [Rhodoc... 175 3e-42
gi|111025518|ref|YP_707938.1| hypothetical protein RHA1_ro08736 ... 171 4e-41
gi|260906265|ref|ZP_05914587.1| hypothetical protein BlinB_13136... 168 5e-40
gi|150377945|ref|YP_001314540.1| hypothetical protein Smed_5914 ... 141 6e-32
gi|83945301|ref|ZP_00957650.1| hypothetical protein OA2633_01000... 135 3e-30
gi|84502040|ref|ZP_01000198.1| hypothetical protein OB2597_18172... 133 1e-29
gi|88812212|ref|ZP_01127463.1| hypothetical protein NB231_02393 ... 132 3e-29
gi|154252814|ref|YP_001413638.1| hypothetical protein Plav_2371 ... 130 9e-29
gi|335425095|ref|ZP_08554086.1| hypothetical protein SSPSH_20381... 130 1e-28
gi|149927404|ref|ZP_01915659.1| hypothetical protein LMED105_009... 130 1e-28
gi|218781683|ref|YP_002433001.1| hypothetical protein Dalk_3847 ... 124 6e-27
gi|343919697|gb|EGV30440.1| hypothetical protein ThidrDRAFT_2641... 121 5e-26
gi|193075936|gb|ABO10512.2| hypothetical protein A1S_0015 [Acine... 119 3e-25
gi|330825496|ref|YP_004388799.1| hypothetical protein Alide2_293... 118 4e-25
gi|319763301|ref|YP_004127238.1| hypothetical protein Alide_2619... 118 4e-25
gi|311694043|gb|ADP96916.1| conserved hypothetical protein [Mari... 116 2e-24
gi|337281443|ref|YP_004620915.1| hypothetical protein Rta_37810 ... 112 4e-23
gi|260888071|ref|ZP_05899334.1| conserved hypothetical protein [... 111 6e-23
gi|153872805|ref|ZP_02001591.1| conserved hypothetical protein [... 110 2e-22
gi|323142190|ref|ZP_08077025.1| hypothetical protein HMPREF9443_... 106 2e-21
gi|292669166|ref|ZP_06602592.1| conserved hypothetical protein [... 104 5e-21
gi|319796601|ref|YP_004158241.1| hypothetical protein Varpa_5978... 104 6e-21
gi|209549113|ref|YP_002281030.1| hypothetical protein Rleg2_1513... 103 1e-20
gi|126640130|ref|YP_001083114.1| hypothetical protein A1S_0015 [... 103 2e-20
gi|121609801|ref|YP_997608.1| hypothetical protein Veis_2854 [Ve... 103 2e-20
gi|197105591|ref|YP_002130968.1| hypothetical protein PHZ_c2128 ... 101 8e-20
gi|83643093|ref|YP_431528.1| hypothetical protein HCH_00186 [Hah... 100 1e-19
gi|90424659|ref|YP_533029.1| hypothetical protein RPC_3168 [Rhod... 100 2e-19
gi|153930566|ref|YP_001393240.1| hypothetical protein YpsIP31758... 99.8 2e-19
gi|39995993|ref|NP_951944.1| hypothetical protein GSU0887 [Geoba... 99.8 2e-19
gi|296123030|ref|YP_003630808.1| hypothetical protein Plim_2786 ... 99.8 2e-19
gi|265756807|ref|ZP_06090795.1| conserved hypothetical protein [... 99.4 2e-19
gi|298505008|gb|ADI83731.1| conserved hypothetical protein [Geob... 99.4 3e-19
gi|237708151|ref|ZP_04538632.1| conserved hypothetical protein [... 97.8 7e-19
gi|150004189|ref|YP_001298933.1| hypothetical protein BVU_1630 [... 97.8 7e-19
>gi|15607507|ref|NP_214880.1| hypothetical protein Rv0366c [Mycobacterium tuberculosis H37Rv]
gi|15839752|ref|NP_334789.1| hypothetical protein MT0382 [Mycobacterium tuberculosis CDC1551]
gi|31791543|ref|NP_854036.1| hypothetical protein Mb0373c [Mycobacterium bovis AF2122/97]
58 more sequence titles
Length=197
Score = 395 bits (1015), Expect = 2e-108, Method: Compositional matrix adjust.
Identities = 196/197 (99%), Positives = 197/197 (100%), Gaps = 0/197 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD
Sbjct 1 MKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG
Sbjct 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS
Sbjct 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
Query 181 WTPPPLMSRWSNRPETA 197
WTPPPLMSRWSNRPETA
Sbjct 181 WTPPPLMSRWSNRPETA 197
>gi|148821562|ref|YP_001286316.1| hypothetical protein TBFG_10371 [Mycobacterium tuberculosis F11]
gi|253797292|ref|YP_003030293.1| hypothetical protein TBMG_00370 [Mycobacterium tuberculosis KZN
1435]
gi|254549309|ref|ZP_05139756.1| hypothetical protein Mtube_02418 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
11 more sequence titles
Length=197
Score = 393 bits (1009), Expect = 8e-108, Method: Compositional matrix adjust.
Identities = 195/197 (99%), Positives = 196/197 (99%), Gaps = 0/197 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD
Sbjct 1 MKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG
Sbjct 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPETKIRERHRRLAELVAQAITLADGATVYD SRLAGPRIVAQFSGGGIIGRACWPS
Sbjct 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDKSRLAGPRIVAQFSGGGIIGRACWPS 180
Query 181 WTPPPLMSRWSNRPETA 197
WTPPPLMSRWSNRPETA
Sbjct 181 WTPPPLMSRWSNRPETA 197
>gi|340625396|ref|YP_004743848.1| hypothetical protein MCAN_03671 [Mycobacterium canettii CIPT
140010059]
gi|340003586|emb|CCC42707.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=197
Score = 390 bits (1002), Expect = 6e-107, Method: Compositional matrix adjust.
Identities = 194/197 (99%), Positives = 195/197 (99%), Gaps = 0/197 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD
Sbjct 1 MKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE LAVERVRHRVAAG
Sbjct 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEDLAVERVRHRVAAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPR VAQFSGGGIIGRACWPS
Sbjct 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRNVAQFSGGGIIGRACWPS 180
Query 181 WTPPPLMSRWSNRPETA 197
WTPPPLMSRWSNRPETA
Sbjct 181 WTPPPLMSRWSNRPETA 197
>gi|41407874|ref|NP_960710.1| hypothetical protein MAP1776c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466097|ref|YP_881662.1| hypothetical protein MAV_2470 [Mycobacterium avium 104]
gi|254775130|ref|ZP_05216646.1| hypothetical protein MaviaA2_10731 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41396228|gb|AAS04093.1| hypothetical protein MAP_1776c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118167384|gb|ABK68281.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336457321|gb|EGO36335.1| hypothetical protein MAPs_23920 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=192
Score = 290 bits (742), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 145/190 (77%), Positives = 162/190 (86%), Gaps = 0/190 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
++RLD+V GPNGAGKSTF+ALTLAPLLPG V VNADEIA+QRWP DP SHAY AA+VAAD
Sbjct 1 MERLDVVVGPNGAGKSTFIALTLAPLLPGSVVVNADEIARQRWPQDPASHAYDAAKVAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRA+LIDLGR FIAETVFSHPSKL+L+ AR AG+TVVLHVL+IPE LAVERVRHRV AG
Sbjct 61 TRAKLIDLGRSFIAETVFSHPSKLDLLHAARRAGFTVVLHVLLIPEDLAVERVRHRVRAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPETKIRERHRRL VA+A+TLAD AT YDNSRL GPR+VA+ SGG +G WP+
Sbjct 121 GHDVPETKIRERHRRLWTPVAEAMTLADLATGYDNSRLRGPRVVARLSGGLTVGAVDWPA 180
Query 181 WTPPPLMSRW 190
W P L SRW
Sbjct 181 WAPETLRSRW 190
>gi|342859741|ref|ZP_08716394.1| hypothetical protein MCOL_12708 [Mycobacterium colombiense CECT
3035]
gi|342132873|gb|EGT86093.1| hypothetical protein MCOL_12708 [Mycobacterium colombiense CECT
3035]
Length=192
Score = 288 bits (736), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 141/190 (75%), Positives = 162/190 (86%), Gaps = 0/190 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+ RLDLV GPNGAGKSTF+A TLAPLLPG + VNADEIA+QRWP+DP SH+Y AA++AAD
Sbjct 1 MDRLDLVVGPNGAGKSTFIAFTLAPLLPGSLVVNADEIARQRWPEDPASHSYDAARIAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRA+LIDLGR F+AETVFSHPSKL+LI TAR AG+TVVLHVL++PE LAVERVRHRV AG
Sbjct 61 TRAKLIDLGRSFVAETVFSHPSKLDLIHTARHAGFTVVLHVLLVPEDLAVERVRHRVRAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPE KIRERHRRL VA+AI L+D ATVYDNSRL GPRI+A+ SGG +G WP+
Sbjct 121 GHDVPEVKIRERHRRLWTPVAEAIALSDLATVYDNSRLRGPRIIARLSGGPTVGAPEWPA 180
Query 181 WTPPPLMSRW 190
WTP L +RW
Sbjct 181 WTPENLRARW 190
>gi|315446135|ref|YP_004079014.1| hypothetical protein Mspyr1_46290 [Mycobacterium sp. Spyr1]
gi|315264438|gb|ADU01180.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=193
Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 128/191 (68%), Positives = 155/191 (82%), Gaps = 0/191 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLV G NGAGKSTF+ LTLAPL+P V+VNADEIAK+RWPDDP H+Y+AA++AA+
Sbjct 1 MKRLDLVVGSNGAGKSTFIELTLAPLVPRSVYVNADEIAKRRWPDDPARHSYEAARIAAN 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRARLI+LG FIAETVFSHPSKLEL+ A AGYT++LH +IPE LAV+RVRHRV AG
Sbjct 61 TRARLIELGESFIAETVFSHPSKLELLDVAHAAGYTIILHAAMIPEELAVQRVRHRVQAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPE+KIR++++RL ++VA A AD AT YDNS + GPRIV Q + G +G A WP
Sbjct 121 GHDVPESKIRQQYQRLWDVVATAAGRADEATFYDNSAIRGPRIVVQLAAGIAVGSALWPD 180
Query 181 WTPPPLMSRWS 191
WTP PL SRW+
Sbjct 181 WTPAPLTSRWA 191
>gi|108799627|ref|YP_639824.1| hypothetical protein Mmcs_2660 [Mycobacterium sp. MCS]
gi|119868738|ref|YP_938690.1| hypothetical protein Mkms_2705 [Mycobacterium sp. KMS]
gi|126435270|ref|YP_001070961.1| hypothetical protein Mjls_2690 [Mycobacterium sp. JLS]
gi|108770046|gb|ABG08768.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119694827|gb|ABL91900.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126235070|gb|ABN98470.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=192
Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/190 (70%), Positives = 150/190 (79%), Gaps = 0/190 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
++RLDLV GPNGAGKSTFVA TLAPLLPG FVNADEIA+QRWPDD H+Y+AA++AA
Sbjct 1 MRRLDLVIGPNGAGKSTFVAFTLAPLLPGSPFVNADEIARQRWPDDAEQHSYEAARIAAA 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TR+ LI GR FIAETVFSHPSKL+LI A YTVV+HVL++PE L+VERVRHRV AG
Sbjct 61 TRSALIRSGRSFIAETVFSHPSKLDLIAEAHGRDYTVVVHVLLVPEDLSVERVRHRVLAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GH V E KIRER+RRL +L AQAI D ATVYDNSR GPRIVAQF+GG IG WP
Sbjct 121 GHRVSEDKIRERYRRLWDLAAQAIESCDSATVYDNSRRRGPRIVAQFTGGEPIGAPAWPE 180
Query 181 WTPPPLMSRW 190
WTP PL+ W
Sbjct 181 WTPAPLVQHW 190
>gi|118469358|ref|YP_887740.1| hypothetical protein MSMEG_3436 [Mycobacterium smegmatis str.
MC2 155]
gi|118170645|gb|ABK71541.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=192
Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/190 (69%), Positives = 151/190 (80%), Gaps = 0/190 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLV GPNGAGKSTFV LTLAPLL G FVNADEIAK+RWP P H+Y+AA++A+D
Sbjct 1 MKRLDLVVGPNGAGKSTFVELTLAPLLTGSAFVNADEIAKRRWPHAPAEHSYEAARIASD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TR +LI+LG FIAETVFSHPSKL+LI TA+ AGYTVV+HV++IPE LAV RV+HRV AG
Sbjct 61 TRLKLIELGESFIAETVFSHPSKLQLIDTAQAAGYTVVMHVVMIPEDLAVLRVQHRVRAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GH VPE KIRERH+RL LVA A AD +T YDNS + GPRIVAQ +GG +GR WP
Sbjct 121 GHHVPEEKIRERHQRLWPLVALAAARADISTFYDNSAVRGPRIVAQLAGGFAVGRPAWPM 180
Query 181 WTPPPLMSRW 190
W P L SRW
Sbjct 181 WAPQVLTSRW 190
>gi|145225774|ref|YP_001136452.1| hypothetical protein Mflv_5198 [Mycobacterium gilvum PYR-GCK]
gi|145218260|gb|ABP47664.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=211
Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/189 (67%), Positives = 152/189 (81%), Gaps = 0/189 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLV G NGAGKSTF+ LTLAPL+P V+VNADEIAK+RWPDDP H+Y+AA++AA
Sbjct 1 MKRLDLVVGSNGAGKSTFIELTLAPLVPRSVYVNADEIAKRRWPDDPARHSYEAARIAAS 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRARLI+LG FIAETVFSHPSKLEL+ A AGYT++LH ++IPE LAV+RVRH + AG
Sbjct 61 TRARLIELGESFIAETVFSHPSKLELLDVAHAAGYTIILHTVLIPEELAVQRVRHHMQAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHD PE+KIR+R++RL +LVA A AD AT YDNS + GPRIVAQ + G +G A WP+
Sbjct 121 GHDAPESKIRQRYQRLWDLVATAAGRADEATFYDNSAIRGPRIVAQLAAGIAVGSALWPN 180
Query 181 WTPPPLMSR 189
WTP PL R
Sbjct 181 WTPAPLTRR 189
>gi|296165039|ref|ZP_06847594.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899687|gb|EFG79138.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=192
Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 138/190 (73%), Positives = 154/190 (82%), Gaps = 0/190 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLV GPNGAGKSTF+A TLAPLLP VFVNADEIAKQRWPD+P HAY AA++AAD
Sbjct 1 MKRLDLVVGPNGAGKSTFIAFTLAPLLPRSVFVNADEIAKQRWPDEPAGHAYDAARIAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRA+LID G FIAETVFSHPSKL+LIR+A AGY VLHV++IPE LAVERVR RV G
Sbjct 61 TRAKLIDAGVSFIAETVFSHPSKLQLIRSAHDAGYVTVLHVMLIPEELAVERVRRRVRHG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPE KIRERHRRL LVA AI +AD ATVYDNSR++GPRIVAQ + G +IG WP+
Sbjct 121 GHDVPEGKIRERHRRLWHLVADAIEIADTATVYDNSRVSGPRIVAQLTAGTVIGAPTWPA 180
Query 181 WTPPPLMSRW 190
W L RW
Sbjct 181 WASEELCQRW 190
>gi|254822142|ref|ZP_05227143.1| hypothetical protein MintA_19564 [Mycobacterium intracellulare
ATCC 13950]
Length=192
Score = 247 bits (630), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 135/192 (71%), Positives = 153/192 (80%), Gaps = 0/192 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
++RLDLV GPNGAGKSTF+A TLAPLLPG VNADEIA+QRWP + AY AAQ+AA
Sbjct 1 MQRLDLVVGPNGAGKSTFIAFTLAPLLPGSPVVNADEIARQRWPGEAAGRAYDAAQIAAA 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRA+LIDLGR FIAETVFSHPSKL+L+RTA AG+T VLH ++IPE LAVERVRHRV AG
Sbjct 61 TRAKLIDLGRSFIAETVFSHPSKLDLVRTAHRAGFTAVLHAMLIPEDLAVERVRHRVRAG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GHDVPETK+RERHRRL V AI L+D ATVYD+ RL GPRIVA+ SGG IG WP+
Sbjct 121 GHDVPETKVRERHRRLWTPVTDAIALSDVATVYDSGRLRGPRIVARLSGGMTIGSPDWPA 180
Query 181 WTPPPLMSRWSN 192
W P L SRW +
Sbjct 181 WAPEILRSRWPD 192
>gi|226362189|ref|YP_002779967.1| hypothetical protein ROP_27750 [Rhodococcus opacus B4]
gi|226240674|dbj|BAH51022.1| hypothetical protein [Rhodococcus opacus B4]
Length=193
Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/189 (59%), Positives = 134/189 (71%), Gaps = 0/189 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
++RLDL+ GPNGAGK+TF LAPLLPG FVNAD IA RWP H+Y+AA++AA
Sbjct 1 MRRLDLIVGPNGAGKTTFAEQRLAPLLPGSAFVNADLIAADRWPGSAEQHSYEAARIAAT 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
R LI+ G FIAETVFSHPSKLELI AR AGY VVLHV+++P L+V RV RVA G
Sbjct 61 IRDTLIERGESFIAETVFSHPSKLELIDRARRAGYVVVLHVILVPVELSVARVVERVAEG 120
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGGIIGRACWPS 180
GH VPE KIRER +RL LVA+AI +D ATVYDN+ RIVA++ G G+ WP+
Sbjct 121 GHSVPEDKIRERFKRLWPLVAEAIDRSDHATVYDNTAPDVTRIVARYVDGHEAGKITWPA 180
Query 181 WTPPPLMSR 189
WTP L ++
Sbjct 181 WTPAELTTQ 189
>gi|289756433|ref|ZP_06515811.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289711997|gb|EFD76009.1| predicted protein [Mycobacterium tuberculosis T85]
Length=153
Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/107 (99%), Positives = 107/107 (100%), Gaps = 0/107 (0%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD
Sbjct 1 MKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEG 107
TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEG
Sbjct 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEG 107
>gi|289748849|ref|ZP_06508227.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689436|gb|EFD56865.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=97
Score = 197 bits (501), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/97 (99%), Positives = 97/97 (100%), Gaps = 0/97 (0%)
Query 101 VLVIPEGLAVERVRHRVAAGGHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAG 160
+LVIPEGLAVERVRHRVAAGGHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAG
Sbjct 1 MLVIPEGLAVERVRHRVAAGGHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAG 60
Query 161 PRIVAQFSGGGIIGRACWPSWTPPPLMSRWSNRPETA 197
PRIVAQFSGGGIIGRACWPSWTPPPLMSRWSNRPETA
Sbjct 61 PRIVAQFSGGGIIGRACWPSWTPPPLMSRWSNRPETA 97
>gi|289445904|ref|ZP_06435648.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418862|gb|EFD16063.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=185
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/141 (72%), Positives = 106/141 (76%), Gaps = 7/141 (4%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+KRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD
Sbjct 1 MKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAG 120
TRARLIDLGRPFIAETVFSHPSKLELIRTARTA + P+ R +A
Sbjct 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAATPSYCTCWLSPKAW-------RSSAS 113
Query 121 GHDVPETKIRERHRRLAELVA 141
G P R R A + A
Sbjct 114 GIASPRAATMCRRPRSASVTA 134
>gi|40787300|gb|AAR90217.1| hypothetical protein PDK3.076 [Rhodococcus sp. DK17]
Length=353
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/184 (55%), Positives = 122/184 (67%), Gaps = 2/184 (1%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRA 63
L +AGPNGAGK+TF L P+ + FVNAD IA RWP + +HAY+AA +AA+ RA
Sbjct 167 LHAIAGPNGAGKTTFYEHILGPVT-HLDFVNADVIAAARWPHEAATHAYEAASLAAEQRA 225
Query 64 RLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAGGHD 123
+ I R F+ ETVFSH SKL+L+R A AG+ + LHV++IPE LAV RV RVA GGH
Sbjct 226 QRIAQRRSFVTETVFSHESKLDLLRDAHQAGFHLTLHVVLIPEELAVARVVDRVANGGHH 285
Query 124 VPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP-RIVAQFSGGGIIGRACWPSWT 182
VPE KIR R RL L+ AI AD A VYDN+ A P R+VA F+ G I WPSWT
Sbjct 286 VPEEKIRARFGRLWSLLRAAIAAADQAYVYDNTTTAHPFRLVASFTNGNPIDDPTWPSWT 345
Query 183 PPPL 186
PP L
Sbjct 346 PPAL 349
>gi|111025518|ref|YP_707938.1| hypothetical protein RHA1_ro08736 [Rhodococcus jostii RHA1]
gi|110824497|gb|ABG99780.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=193
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/184 (55%), Positives = 121/184 (66%), Gaps = 2/184 (1%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRA 63
L +AGPNGAGK+TF L P+ + FVNAD IA RWP + +HAY+AA +AA+ RA
Sbjct 7 LHAIAGPNGAGKTTFYEHILGPVT-HLDFVNADVIAAARWPHEAATHAYEAASLAAEQRA 65
Query 64 RLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAGGHD 123
+ I R F+ ETVFSH SKL+L+R A AG+ + LHV++IPE LAV RV RVA GGH
Sbjct 66 QRIAQRRSFVTETVFSHESKLDLLRDAHQAGFHLTLHVVLIPEELAVARVVDRVANGGHH 125
Query 124 VPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP-RIVAQFSGGGIIGRACWPSWT 182
VPE KIR R RL L+ AI AD A VYDN+ A P R+VA F+ G I WPSWT
Sbjct 126 VPEEKIRARFGRLWSLLRAAIAAADQAYVYDNTTTAHPFRLVASFTNGNPIDDPTWPSWT 185
Query 183 PPPL 186
P L
Sbjct 186 PTAL 189
>gi|260906265|ref|ZP_05914587.1| hypothetical protein BlinB_13136 [Brevibacterium linens BL2]
Length=191
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/184 (52%), Positives = 121/184 (66%), Gaps = 2/184 (1%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRA 63
L L+AGPNGAGKS++V LAP+ + F+NAD IA QRWPD HAY+AA++A R
Sbjct 4 LHLLAGPNGAGKSSYVHDVLAPVT-HLPFINADVIAAQRWPDTQLEHAYEAARIAERLRR 62
Query 64 RLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAGGHD 123
I R FI+ETVFSHPSK++L+ A AG+ V LH++++P L V+RVR RV GGH
Sbjct 63 EFIAEKRSFISETVFSHPSKVQLVTDAADAGFLVTLHIVMVPVDLTVQRVRERVRRGGHA 122
Query 124 VPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP-RIVAQFSGGGIIGRACWPSWT 182
VPE KIRER+ RL + VA+ I D A +YDNS P + A F G ++G WP+W
Sbjct 123 VPEHKIRERYERLWQHVAETIGTVDSANLYDNSSARRPFHLCASFELGALVGSPDWPTWV 182
Query 183 PPPL 186
P PL
Sbjct 183 PDPL 186
>gi|150377945|ref|YP_001314540.1| hypothetical protein Smed_5914 [Sinorhizobium medicae WSM419]
gi|150032492|gb|ABR64607.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length=196
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/181 (49%), Positives = 109/181 (61%), Gaps = 4/181 (2%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRA 63
L L+AGPNGAGKST +AP G FV AD I ++ D T +Y+AA+VA D RA
Sbjct 5 LVLLAGPNGAGKSTLYQTRVAPRFAG-PFVKADIIQRKEIKDASTEASYKAAEVARDRRA 63
Query 64 RLIDLGRPFIAETVFSHPSKLELIRTARTAGYTV-VLHVLVIPEGLAVERVRHRVAAGGH 122
L G+ F TVFSHPSKLE+I AR+ GY V V+HV V L+V RV+ V GGH
Sbjct 64 ELFGSGKSFATGTVFSHPSKLEIIDEARSRGYIVIVMHVGVESPDLSVARVKGPVGEGGH 123
Query 123 DVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAG-PRIVAQFSGGGIIGRAC-WPS 180
DVPE KIR R+ R L+ +AI +D V+DNSRL PR V F+ G ++ A P
Sbjct 124 DVPEEKIRTRYTRGQPLIRKAILRSDRGMVFDNSRLNEPPRQVLAFANGRLLEAAYRLPD 183
Query 181 W 181
W
Sbjct 184 W 184
>gi|83945301|ref|ZP_00957650.1| hypothetical protein OA2633_01000 [Oceanicaulis alexandrii HTCC2633]
gi|83851471|gb|EAP89327.1| hypothetical protein OA2633_01000 [Oceanicaulis alexandrii HTCC2633]
Length=195
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/179 (45%), Positives = 105/179 (59%), Gaps = 4/179 (2%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRARL 65
++AGPNGAGKST +AP+ G F+NAD I + D +Y+AA++A++ RA
Sbjct 7 VLAGPNGAGKSTLYHTRVAPIFAG-PFINADLIQRDELKDGALDASYEAARIASERRAAF 65
Query 66 IDLGRPFIAETVFSHPSKLELIRTARTAGYT-VVLHVLVIPEGLAVERVRHRVAAGGHDV 124
I R F+ ETVFSHPSKL L+ A+ AG+T +V+HV V L+V RV+ RV GH V
Sbjct 66 IAEKRDFVTETVFSHPSKLSLVDEAKAAGFTLIVMHVGVETPELSVARVKARVDEQGHAV 125
Query 125 PETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP--RIVAQFSGGGIIGRACWPSW 181
PE K+R R R L+ QA+ AD VYDNS L P R + G ++ R P W
Sbjct 126 PEDKVRARFERCGALIRQAVLKADRGFVYDNSGLNTPPKRCLEFKRGARVVVRPTLPGW 184
>gi|84502040|ref|ZP_01000198.1| hypothetical protein OB2597_18172 [Oceanicola batsensis HTCC2597]
gi|84390035|gb|EAQ02669.1| hypothetical protein OB2597_18172 [Oceanicola batsensis HTCC2597]
Length=195
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/181 (45%), Positives = 105/181 (59%), Gaps = 4/181 (2%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRA 63
L L+AGPNGAGKST +AP G F+NAD I + D +Y+AA++A R
Sbjct 5 LVLIAGPNGAGKSTLYQTRVAPSFAG-PFINADIIQRDELRDPSMEASYEAARIAEARRT 63
Query 64 RLIDLGRPFIAETVFSHPSKLELIRTARTAGY-TVVLHVLVIPEGLAVERVRHRVAAGGH 122
L++ + F ETVFSHPSKL++I ART GY VV+HV V L+V RV+ R GGH
Sbjct 64 DLMEASQSFATETVFSHPSKLDIIEIARTRGYLVVVMHVGVDSPDLSVHRVQGRTEEGGH 123
Query 123 DVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAG-PRIVAQFSGGGII-GRACWPS 180
DVPE KIR R R L+ QA+ AD V+DNS L P+ + F+ G ++ P
Sbjct 124 DVPEEKIRARFDRGQPLIRQAVLRADRGMVFDNSGLNTPPKQMLVFANGRLVRADPILPE 183
Query 181 W 181
W
Sbjct 184 W 184
>gi|88812212|ref|ZP_01127463.1| hypothetical protein NB231_02393 [Nitrococcus mobilis Nb-231]
gi|88790463|gb|EAR21579.1| hypothetical protein NB231_02393 [Nitrococcus mobilis Nb-231]
Length=196
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/182 (47%), Positives = 113/182 (63%), Gaps = 2/182 (1%)
Query 3 RLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTR 62
RL L+ GPNGAGK++ +A P + FVNAD +A + WP + HAY+AAQ+AA R
Sbjct 5 RLILLVGPNGAGKTSLYETFIARRFPELPFVNADRLATEHWPGEEEQHAYEAAQLAAAHR 64
Query 63 ARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEGLAVERVRHRVAAGGH 122
L+ R F+AETVFSHPSK+ELI A T GY V L V+ + +AV RV +RVA GGH
Sbjct 65 EALLHAYRSFVAETVFSHPSKVELIERAITLGYEVWLLVIHVDPEVAVARVAYRVAEGGH 124
Query 123 DVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRI-VAQFSGGGII-GRACWPS 180
VPE KIR+RH RL +L+A+ + + A ++DN+ I +A S G + G P
Sbjct 125 AVPEEKIRKRHVRLLDLIAKVLPQVNRAILFDNNTSGHGHIAIATVSRGRVQWGGFGQPD 184
Query 181 WT 182
WT
Sbjct 185 WT 186
>gi|154252814|ref|YP_001413638.1| hypothetical protein Plav_2371 [Parvibaculum lavamentivorans
DS-1]
gi|154156764|gb|ABS63981.1| conserved hypothetical protein [Parvibaculum lavamentivorans
DS-1]
Length=191
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/170 (48%), Positives = 102/170 (60%), Gaps = 3/170 (1%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRARL 65
++AGPNGAGKST A +AP G F+NAD I + D +Y+AA++A+ RA
Sbjct 3 VLAGPNGAGKSTLYATRVAPGFAG-PFINADIIQRNELRDPSPEASYEAARIASSRRAEF 61
Query 66 IDLGRPFIAETVFSHPSKLELIRTARTAGYTV-VLHVLVIPEGLAVERVRHRVAAGGHDV 124
+ R F+ ETVFSHPSKLELI AR G+TV V+HV V L+V RV RV GGH V
Sbjct 62 VIQRRDFVTETVFSHPSKLELIGEARANGFTVIVMHVGVETAELSVARVEARVEEGGHIV 121
Query 125 PETKIRERHRRLAELVAQAITLADGATVYDNSRLA-GPRIVAQFSGGGII 173
P KI R+ R A L+ A+ AD V+DNSRL PR F+ G ++
Sbjct 122 PVDKIHARYNRSAPLIRDAVLQADRGMVFDNSRLNLPPRHCLTFANGRLV 171
>gi|335425095|ref|ZP_08554086.1| hypothetical protein SSPSH_20381 [Salinisphaera shabanensis E1L3A]
gi|334886771|gb|EGM25118.1| hypothetical protein SSPSH_20381 [Salinisphaera shabanensis E1L3A]
Length=195
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/159 (51%), Positives = 97/159 (62%), Gaps = 2/159 (1%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRA 63
L ++AGPNGAGKST + P F+NADEIA+Q + AY A++ AA R
Sbjct 9 LFILAGPNGAGKSTLYTDRVRPATRA-PFINADEIARQWAAEGIERDAYAASREAAVQRQ 67
Query 64 RLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVL-HVLVIPEGLAVERVRHRVAAGGH 122
RLID R F+ ETVFSHPSKL L+ TA AGY VVL HV V G++V RV R GGH
Sbjct 68 RLIDERRSFVTETVFSHPSKLALVETALAAGYRVVLYHVHVRLPGMSVARVAARTVVGGH 127
Query 123 DVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP 161
VPE KIRER+ R L+ QA + A V+DNS+ P
Sbjct 128 AVPENKIRERYERNLPLIRQAASRASATLVFDNSKRGHP 166
>gi|149927404|ref|ZP_01915659.1| hypothetical protein LMED105_00922 [Limnobacter sp. MED105]
gi|149823896|gb|EDM83121.1| hypothetical protein LMED105_00922 [Limnobacter sp. MED105]
Length=189
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/174 (43%), Positives = 102/174 (59%), Gaps = 4/174 (2%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+K+L L+ G NGAGKSTF L PL G+ FVNAD+IA+ +P P H+Y+AA++A +
Sbjct 1 MKQLWLLVGGNGAGKSTFYRTQLKPL--GMPFVNADDIARDVFPQAPEEHSYEAAKIAEN 58
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVL-HVLVIPEGLAVERVRHRVAA 119
R L++ G+ F ETVFSHPSK++ + A+ GY VV+ V + L RV R+
Sbjct 59 LRNSLLEQGKNFCFETVFSHPSKIDFVAKAKALGYQVVMVFVHLEQSSLNKARVHQRIET 118
Query 120 GGHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP-RIVAQFSGGGI 172
GGH VP+ KI R R + V A+ L D V DNS P R + + GG +
Sbjct 119 GGHAVPDDKIETRIPRTVDNVLNALPLCDDVWVLDNSSAQDPYRKILRIQGGDL 172
>gi|218781683|ref|YP_002433001.1| hypothetical protein Dalk_3847 [Desulfatibacillum alkenivorans
AK-01]
gi|218763067|gb|ACL05533.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
AK-01]
Length=191
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/156 (49%), Positives = 92/156 (59%), Gaps = 3/156 (1%)
Query 2 KRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADT 61
K+L ++ G NGAGKSTF LA G+ FVNAD IAK PD P +Y+AA +A D
Sbjct 5 KQLWILTGGNGAGKSTFYHHYLAK--RGLAFVNADLIAKTIDPDTPEKLSYEAATIADDI 62
Query 62 RARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVL-HVLVIPEGLAVERVRHRVAAG 120
RA LI G F ETVFSHPSK++ I A+ GY V+L ++ + L RV RV G
Sbjct 63 RADLIAQGVSFCFETVFSHPSKIDFIAMAKARGYMVILVYIHLFDPSLNEARVHQRVLEG 122
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNS 156
GHDVP KIR R R E V A+ L D A + DNS
Sbjct 123 GHDVPADKIRARIPRTLENVKAALPLVDEAWILDNS 158
>gi|343919697|gb|EGV30440.1| hypothetical protein ThidrDRAFT_2641 [Thiorhodococcus drewsii
AZ1]
Length=199
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/161 (45%), Positives = 96/161 (60%), Gaps = 3/161 (1%)
Query 2 KRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADT 61
++L L+ G +GAGKSTF L LAPL G+ F+NAD IA+ +P+ P + +Y AA VA +
Sbjct 5 RQLWLLTGGDGAGKSTFYRLRLAPL--GLPFINADLIARDLYPNAPEARSYDAAWVATEL 62
Query 62 RARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEG-LAVERVRHRVAAG 120
R RL+ GR F ETVFSHPSK++ I A+T GY +VL + + L RV R++ G
Sbjct 63 RQRLLKEGRSFCFETVFSHPSKIDFIAQAKTLGYQIVLVFIHLETAELNQARVAQRISEG 122
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP 161
GH +P K+ R RL V A+ L D + DNS P
Sbjct 123 GHSMPADKVLARIPRLLGHVKTALPLCDHVRLLDNSSADDP 163
>gi|193075936|gb|ABO10512.2| hypothetical protein A1S_0015 [Acinetobacter baumannii ATCC 17978]
gi|322506424|gb|ADX01878.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
gi|323517825|gb|ADX92206.1| hypothetical protein ABTW07_1777 [Acinetobacter baumannii TCDC-AB0715]
gi|323519206|gb|ADX93587.1| hypothetical protein ABTW07_3164 [Acinetobacter baumannii TCDC-AB0715]
gi|342227500|gb|EGT92425.1| hypothetical protein ABNIH2_12655 [Acinetobacter baumannii ABNIH2]
Length=500
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/160 (45%), Positives = 99/160 (62%), Gaps = 10/160 (6%)
Query 6 LVAGPNGAGKSTFVALTLAP----LLPGIVFVNADEIAKQRW----PDDPTSHAYQAAQV 57
+VAG NGAGKST + + P L I F+NAD Q + +PT HA +A +
Sbjct 14 IVAGGNGAGKSTLIDNVIIPKFNSLNLDINFINADVWQLQHFGHFDNTNPT-HAREAQKW 72
Query 58 AADTRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVL-HVLVIPEGLAVERVRHR 116
A R + +D GR FIAETVFSHPSK++LI+ A++ G+ VVL H+ + +A++R++ R
Sbjct 73 AEAERQKHLDEGRSFIAETVFSHPSKVDLIKEAKSKGFYVVLYHIHLENSDIALDRIKDR 132
Query 117 VAAGGHDVPETKIRERHRRLAELVAQAITLADGATVYDNS 156
V GGHDV E K++ R+ R+ LVA+A AD V DNS
Sbjct 133 VRKGGHDVDEDKVKARYERVLPLVAEATQYADLTFVLDNS 172
>gi|330825496|ref|YP_004388799.1| hypothetical protein Alide2_2936 [Alicycliphilus denitrificans
K601]
gi|329310868|gb|AEB85283.1| hypothetical protein Alide2_2936 [Alicycliphilus denitrificans
K601]
Length=200
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/188 (48%), Positives = 115/188 (62%), Gaps = 12/188 (6%)
Query 4 LDLVAGPNGAGKST-FVALTLAPLL-PGIVFVNAD--EIAKQRWPDDPTSHAYQAAQVAA 59
L+AGPNGAGKST + AL +L P + FVNAD E + DP + QAA+ A
Sbjct 8 FHLLAGPNGAGKSTLYRALVREGILGPPLEFVNADLHERDHLQHITDPLRRS-QAARAWA 66
Query 60 D-TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVI--PEGLAVERVRHR 116
D RA L+ +PF +ETVFSHPSKLELI +A+ GYTV LHV+ + P+ L + RV R
Sbjct 67 DGRRAALLAARQPFASETVFSHPSKLELIASAQRQGYTVALHVVALDDPQRL-LGRVAQR 125
Query 117 VAAGGHDVPETKIRERHRRLAELVAQAITLADGATVYD--NSRLAGPRIVAQFSGGGIIG 174
V GGH VP +I R+ R L+AQA+ LAD A +YD ++ GPR+VA SG G I
Sbjct 126 VREGGHPVPPERILARYPRTMVLLAQAVRLADVAYLYDAVDTSAGGPRLVAVRSGAGTIE 185
Query 175 RA-CWPSW 181
A P+W
Sbjct 186 PAGSLPAW 193
>gi|319763301|ref|YP_004127238.1| hypothetical protein Alide_2619 [Alicycliphilus denitrificans
BC]
gi|317117862|gb|ADV00351.1| hypothetical protein Alide_2619 [Alicycliphilus denitrificans
BC]
Length=200
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/188 (48%), Positives = 115/188 (62%), Gaps = 12/188 (6%)
Query 4 LDLVAGPNGAGKST-FVALTLAPLL-PGIVFVNAD--EIAKQRWPDDPTSHAYQAAQVAA 59
L+AGPNGAGKST + AL +L P + FVNAD E + DP + QAA+ A
Sbjct 8 FHLLAGPNGAGKSTLYRALVREGILGPPLEFVNADLHERDHLQHITDPLRRS-QAARAWA 66
Query 60 D-TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVI--PEGLAVERVRHR 116
D RA L+ +PF +ETVFSHPSKLELI +A+ GYTV LHV+ + P+ L + RV R
Sbjct 67 DGRRAALLAARQPFASETVFSHPSKLELIASAQRQGYTVALHVVALDDPQRL-LGRVAQR 125
Query 117 VAAGGHDVPETKIRERHRRLAELVAQAITLADGATVYD--NSRLAGPRIVAQFSGGGIIG 174
V GGH VP +I R+ R L+AQA+ LAD A +YD ++ GPR+VA SG G I
Sbjct 126 VREGGHPVPPERILARYPRTMVLLAQAVRLADVAYLYDAVDTSAGGPRLVAVRSGAGTIE 185
Query 175 RA-CWPSW 181
A P+W
Sbjct 186 PAGSLPAW 193
>gi|311694043|gb|ADP96916.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
Length=194
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/159 (44%), Positives = 90/159 (57%), Gaps = 3/159 (1%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRARL 65
L+ G NGAGK+TF LA I VNAD IAK WPD P H+Y+AA VA R RL
Sbjct 11 LLVGGNGAGKTTFYERFLAR--RKIPLVNADNIAKSVWPDAPEKHSYEAALVAERERFRL 68
Query 66 IDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEG-LAVERVRHRVAAGGHDV 124
++ + F ETVFSHPSK++ + A+ AG+ + L + L RV RV +GGH V
Sbjct 69 LEERQTFCFETVFSHPSKVDFVGAAKAAGFRIRLFYFHLEFAELNKARVASRVKSGGHSV 128
Query 125 PETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRI 163
P+ KI+ R R E + Q + L D + DNS L P +
Sbjct 129 PDAKIQSRIPRTLENLRQCVGLVDELHLVDNSSLDHPYV 167
>gi|337281443|ref|YP_004620915.1| hypothetical protein Rta_37810 [Ramlibacter tataouinensis TTB310]
gi|334732520|gb|AEG94896.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=197
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/184 (42%), Positives = 103/184 (56%), Gaps = 6/184 (3%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWP--DDPTSHAYQAAQVAADT 61
L L+AGPNGAGK+T + +AP PG+ F++A A DP + A A A +
Sbjct 4 LHLIAGPNGAGKTTLHQVLIAPRHPGLPFIDAQAHAAAHLQHVTDPVAQAQAARAWAEEQ 63
Query 62 RARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE-GLAVERVRHRVAAG 120
R L+ GR F ETVFSHPS+L L+ ART G+ VVL+ L + E ++RV RV G
Sbjct 64 RQALLRQGRSFATETVFSHPSRLALMAQARTLGFEVVLYALALDEPRRLLQRVSQRVREG 123
Query 121 GHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLA--GPRIVAQFSGGGI-IGRAC 177
GH VP K+ ER+ R E + QA+ LAD A + D A GPR+VA + G + +
Sbjct 124 GHAVPTHKVLERYARCLENLRQAVFLADLAFLLDACDAADGGPRLVATLTSGQMQLHTVL 183
Query 178 WPSW 181
P W
Sbjct 184 RPRW 187
>gi|260888071|ref|ZP_05899334.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
gi|330839954|ref|YP_004414534.1| Zeta toxin family protein [Selenomonas sputigena ATCC 35185]
gi|260862100|gb|EEX76600.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
gi|329747718|gb|AEC01075.1| Zeta toxin family protein [Selenomonas sputigena ATCC 35185]
Length=198
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/162 (42%), Positives = 89/162 (55%), Gaps = 10/162 (6%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRARL 65
+ AGPNG+GKSTFV + L P + ++NADEI K D +AAQ+A R
Sbjct 12 VFAGPNGSGKSTFVEI----LRPRMDYINADEIKKNIKCSD-----LEAAQIAEGQREDC 62
Query 66 IDLGRPFIAETVFSHPSKLELIRTARTAGYTV-VLHVLVIPEGLAVERVRHRVAAGGHDV 124
+ R F ETV S L+L+ AR AGY V +VL + V RV+ RV +GGHDV
Sbjct 63 LQEKRDFCFETVLSTNRNLDLLCRARVAGYFVRCYYVLTADPRINVYRVKTRVMSGGHDV 122
Query 125 PETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQ 166
PE KI ER R +LV Q + ++D +YDNS RI +
Sbjct 123 PEDKIYERFWRAMKLVPQIVNVSDICHIYDNSEEEAFRIFKK 164
>gi|153872805|ref|ZP_02001591.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152070727|gb|EDN68407.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=197
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 90/155 (59%), Gaps = 2/155 (1%)
Query 3 RLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTR 62
RL LVAGPNGAGKSTF L + V+VN DEIAK ++ A +A QVA R
Sbjct 5 RLRLVAGPNGAGKSTFTEEVLKKYVNLGVYVNPDEIAKTVIGEE-LFRAKEAQQVAIRQR 63
Query 63 ARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE-GLAVERVRHRVAAGG 121
+L+ G+ E+V SHPS L+ ++ A+ GY L+ + + ++ +RV+ R GG
Sbjct 64 EQLLREGQSMTYESVMSHPSHLDFLKRAKEKGYRTYLYFIGVQSPSISEDRVKEREKNGG 123
Query 122 HDVPETKIRERHRRLAELVAQAITLADGATVYDNS 156
H VP+ KI R+ R+ +++A L D A ++DNS
Sbjct 124 HGVPKEKIAPRYNRVMNQLSEACNLVDRAYIFDNS 158
>gi|323142190|ref|ZP_08077025.1| hypothetical protein HMPREF9443_01818 [Phascolarctobacterium
sp. YIT 12067]
gi|322413341|gb|EFY04225.1| hypothetical protein HMPREF9443_01818 [Phascolarctobacterium
sp. YIT 12067]
Length=214
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/162 (40%), Positives = 87/162 (54%), Gaps = 10/162 (6%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRARL 65
+ AGPNG+GKSTF L L P + ++NADEI K DD T AAQ+A R
Sbjct 28 VFAGPNGSGKSTFTDL----LKPPVDYINADEIKKNLKCDDLT-----AAQIAEKQREDH 78
Query 66 IDLGRPFIAETVFSHPSKLELIRTARTAGYTV-VLHVLVIPEGLAVERVRHRVAAGGHDV 124
+ F ETV S P L L++ A+ AGY + ++L + + V R++ RVA GGHDV
Sbjct 79 LKNREDFCFETVMSTPRNLNLLQRAKEAGYFIRCYYILTVDPFINVYRIKSRVAEGGHDV 138
Query 125 PETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQ 166
P KI ER+ + V + +AD +YDNS RI +
Sbjct 139 PVEKIIERYDKALAQVCDVVHVADVCHIYDNSTEQPFRIFKK 180
>gi|292669166|ref|ZP_06602592.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292649218|gb|EFF67190.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length=198
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/152 (43%), Positives = 86/152 (57%), Gaps = 9/152 (5%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRARL 65
+ AGPNG+GKSTF + L P P + ++NADEI K DD +AAQ A R
Sbjct 12 VFAGPNGSGKSTFTEI-LRP--PQMDYINADEIKKNLKCDD-----LEAAQTAERQREAC 63
Query 66 IDLGRPFIAETVFSHPSKLELIRTARTAG-YTVVLHVLVIPEGLAVERVRHRVAAGGHDV 124
+ R F ETV S L+L++ AR G + +VL I + V RV+ RVA+GGHDV
Sbjct 64 LSDKREFCFETVLSTSRNLKLLKRAREMGCFIRCYYVLTIAPIINVYRVKTRVASGGHDV 123
Query 125 PETKIRERHRRLAELVAQAITLADGATVYDNS 156
P+ KI R+ R +LV I ++D +YDNS
Sbjct 124 PKEKIYARYDRAMDLVPAVIAVSDICHIYDNS 155
>gi|319796601|ref|YP_004158241.1| hypothetical protein Varpa_5978 [Variovorax paradoxus EPS]
gi|315599064|gb|ADU40130.1| hypothetical protein Varpa_5978 [Variovorax paradoxus EPS]
Length=194
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/187 (38%), Positives = 102/187 (55%), Gaps = 10/187 (5%)
Query 4 LDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVA---AD 60
L+AGPNGAGKST + P P + F+NAD +R HA + ++ A AD
Sbjct 4 FHLIAGPNGAGKSTLYRYLIQPRYPQLPFINAD--VHEREQLGHIRHALKRSEAARAWAD 61
Query 61 -TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE-GLAVERVRHRVA 118
R + R F++ETVFSHPSKL+LI A+ G+ +VL+V+ + E + RV+ RV+
Sbjct 62 GAREACLQEQRSFVSETVFSHPSKLQLIADAQARGFDLVLYVVCVDEPRRLLTRVQQRVS 121
Query 119 AGGHDVPETKIRERHRRLAELVAQAITLADGATVYDNS--RLAGPRIVAQFSGGGIIGRA 176
GGH VP +I R+ R E + A+ A ++D + L GP++VA GG + A
Sbjct 122 EGGHSVPVDRILARYPRTVEHLRLAVRQVQLAMLFDGADVELGGPQLVASVVGGQVHRHA 181
Query 177 C-WPSWT 182
P+W
Sbjct 182 SRQPAWV 188
>gi|209549113|ref|YP_002281030.1| hypothetical protein Rleg2_1513 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534869|gb|ACI54804.1| conserved hypothetical protein-like protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length=212
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (40%), Positives = 94/168 (56%), Gaps = 9/168 (5%)
Query 6 LVAGPNGAGKST-FVALTLAPLLPGIVFVNADEIAKQR-WPDDPTSHAYQAAQVAADTRA 63
++ GPNG+GKS+ F L L V++NADEIAK DD S +A++VA A
Sbjct 8 ILGGPNGSGKSSAFAKLDLEG-----VWINADEIAKSLPESDDGKSKERRASEVALRRIA 62
Query 64 RLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE-GLAVERVRHRVAAGGH 122
+I+ + F+ ET S L L+R A++AG+ V L+ + + VERVR RV GGH
Sbjct 63 EMIETRQSFVFETTLSSQQSLRLMREAKSAGFKVDLYYVALDSVETNVERVRQRVQKGGH 122
Query 123 DVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGG 170
++PE IR RH+ + A+T+AD + DNS L P V SGG
Sbjct 123 NIPEADIRRRHKGSLAKLTDALTIADEVLLIDNSGLE-PHAVFAISGG 169
>gi|126640130|ref|YP_001083114.1| hypothetical protein A1S_0015 [Acinetobacter baumannii ATCC 17978]
Length=471
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/132 (45%), Positives = 84/132 (64%), Gaps = 6/132 (4%)
Query 30 IVFVNADEIAKQRW----PDDPTSHAYQAAQVAADTRARLIDLGRPFIAETVFSHPSKLE 85
I F+NAD Q + +PT HA +A + A R + +D GR FIAETVFSHPSK++
Sbjct 13 INFINADVWQLQHFGHFDNTNPT-HAREAQKWAEAERQKHLDEGRSFIAETVFSHPSKVD 71
Query 86 LIRTARTAGYTVVL-HVLVIPEGLAVERVRHRVAAGGHDVPETKIRERHRRLAELVAQAI 144
LI+ A++ G+ VVL H+ + +A++R++ RV GGHDV E K++ R+ R+ LVA+A
Sbjct 72 LIKEAKSKGFYVVLYHIHLENSDIALDRIKDRVRKGGHDVDEDKVKARYERVLPLVAEAT 131
Query 145 TLADGATVYDNS 156
AD V DNS
Sbjct 132 QYADLTFVLDNS 143
>gi|121609801|ref|YP_997608.1| hypothetical protein Veis_2854 [Verminephrobacter eiseniae EF01-2]
gi|121554441|gb|ABM58590.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
Length=298
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/155 (41%), Positives = 89/155 (58%), Gaps = 5/155 (3%)
Query 6 LVAGPNGAGKSTFV-ALTLAPLLPGIVFVNADEIAKQRWPD--DPTSHAYQAAQVAADTR 62
+ AGPNG+GKST L L PG V++NAD+IA+ D T AA++A R
Sbjct 3 VFAGPNGSGKSTVTDGLKLDEAFPG-VYINADDIARTELGHIPDVTQRNLDAAKLAEQRR 61
Query 63 ARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPEG-LAVERVRHRVAAGG 121
++ G+PF ETV S P KL L++ A+ G+ V L + + + + RV +RVA GG
Sbjct 62 KDALEKGQPFAFETVMSTPGKLALLQEAKGKGFQVELVFVTTRDADINIARVSNRVALGG 121
Query 122 HDVPETKIRERHRRLAELVAQAITLADGATVYDNS 156
H V K+RER+ R +L+ A+ LAD A +DNS
Sbjct 122 HQVEPDKVRERYERAMQLLPSAVELADTADAFDNS 156
>gi|197105591|ref|YP_002130968.1| hypothetical protein PHZ_c2128 [Phenylobacterium zucineum HLK1]
gi|196479011|gb|ACG78539.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length=208
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/188 (42%), Positives = 100/188 (54%), Gaps = 20/188 (10%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQ---RWPDDPTSHAYQAAQVAADT- 61
++AGPNGAGK+TF L + FVN D +A+ RW S + AQ+ D
Sbjct 8 VIAGPNGAGKTTFYEQWLR-IRSAAEFVNPDLLARAALGRW-----SRTREDAQLGQDLA 61
Query 62 ---RARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTV-VLHVLVIPEGLAVERVRHRV 117
R L+ G + E+ FSHPSKLEL+ A+ AGY V V H+ V AVERV R
Sbjct 62 QARRQALMAAGESLVTESTFSHPSKLELLAEAKRAGYRVAVYHLSVSDADFAVERVAVRT 121
Query 118 AAGGHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAG--PRIVAQFSGGGIIGR 175
A GGH VPE IR R+ R L+ A+ AD V+DNS + G PR +A F+ G+ R
Sbjct 122 ALGGHPVPEANIRGRYARNGPLIRLAVLAADFGLVFDNS-VDGQPPRQLATFA-SGVATR 179
Query 176 AC--WPSW 181
A P W
Sbjct 180 AAADLPGW 187
>gi|83643093|ref|YP_431528.1| hypothetical protein HCH_00186 [Hahella chejuensis KCTC 2396]
gi|83631136|gb|ABC27103.1| uncharacterized protein conserved in bacteria [Hahella chejuensis
KCTC 2396]
Length=192
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/160 (47%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAK---QRWPDDPTSHAYQAAQVAADTR 62
++ G NGAGKSTF LA L I FVNADEIAK + DD T +AA+ A D R
Sbjct 9 VLVGGNGAGKSTFYKHKLAHL--DIPFVNADEIAKGYGETIDDDVT---LRAAREAHDLR 63
Query 63 ARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVL-HVLVIPEGLAVERVRHRVAAGG 121
+L+ R F ETVFSHPSK++L+ +A+ GY + L ++ + E L V RV RV AGG
Sbjct 64 EQLLRERRSFCMETVFSHPSKVDLLLSAKRHGYEITLVYIHLQLEDLHVNRVSQRVRAGG 123
Query 122 HDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGP 161
HDVPE ++R R RL E V+ AI D A +DN+ P
Sbjct 124 HDVPEERLRRRLPRLRENVSAAINFVDFAYFFDNTSAEAP 163
>gi|90424659|ref|YP_533029.1| hypothetical protein RPC_3168 [Rhodopseudomonas palustris BisB18]
gi|90106673|gb|ABD88710.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=224
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/157 (38%), Positives = 88/157 (57%), Gaps = 4/157 (2%)
Query 6 LVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD-TRAR 64
+VAGPNG+GKST + + ++NAD+IA D P + AQ AD R R
Sbjct 1 MVAGPNGSGKSTLTDYLMEAGIEFGEYINADQIASML--DMPEPQRSRQAQAIADFQRER 58
Query 65 LIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE-GLAVERVRHRVAAGGHD 123
+ G F ETV SHPSK++L+ A AGY V L+ + + + + RV +RV++GGHD
Sbjct 59 CLSNGLSFSFETVMSHPSKVDLMIRADDAGYEVTLYFVCTSDPDINITRVENRVSSGGHD 118
Query 124 VPETKIRERHRRLAELVAQAITLADGATVYDNSRLAG 160
VP ++ R+ R L++ A +A ++DNS + G
Sbjct 119 VPRERVAARYHRTLGLLSHAALVAGRTVLFDNSAIVG 155
>gi|153930566|ref|YP_001393240.1| hypothetical protein YpsIP31758_A0045 [Yersinia pseudotuberculosis
IP 31758]
gi|152958110|gb|ABS45573.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
31758]
Length=303
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/196 (37%), Positives = 101/196 (52%), Gaps = 6/196 (3%)
Query 3 RLDLVAGPNGAGKSTFV-ALTLAPLLPGIVFVNADEIAKQRWPD--DPTSHAYQAAQVAA 59
R+ ++AGPNG+GKST L L+ P + ++NAD+I+K D S AA++A
Sbjct 11 RMVVLAGPNGSGKSTVTDGLRLSQKFPPL-YINADDISKNELGHIPDANSRNMAAAKLAE 69
Query 60 DTRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTV-VLHVLVIPEGLAVERVRHRVA 118
+ R + G F ETV S P K+ L AR+ G++V ++ V + RV +RV
Sbjct 70 ERRKTALKNGEAFAFETVMSTPGKIALFDEARSLGFSVDLIFVTTNDPMINFVRVENRVQ 129
Query 119 AGGHDVPETKIRERHRRLAELVAQAITLADGATVYDNSRLA-GPRIVAQFSGGGIIGRAC 177
GGH VPE KI ER+ R +L+ AI AD A VYDNS P+++A I
Sbjct 130 LGGHAVPEEKIFERYARAMQLLPSAIEKADTAEVYDNSENGILPQLIAAKKDSIIEYSEP 189
Query 178 WPSWTPPPLMSRWSNR 193
W L+S + R
Sbjct 190 ISDWVKECLISICNER 205
>gi|39995993|ref|NP_951944.1| hypothetical protein GSU0887 [Geobacter sulfurreducens PCA]
gi|39982758|gb|AAR34217.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
Length=204
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/157 (41%), Positives = 87/157 (56%), Gaps = 3/157 (1%)
Query 3 RLDLVAGPNGAGKSTFVALTLA-PLLPGIVFVNADEIAKQRWPDDPTSHA-YQAAQVAAD 60
+L ++AGPNG+GK+TF + L G +F+N DEIAK + D + A +AA A +
Sbjct 9 KLIVIAGPNGSGKTTFTSQVLRHDWSEGCIFINPDEIAKNEFGDWNSPEAVMKAAARAQE 68
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE-GLAVERVRHRVAA 119
R + R + ETVFS P KL+ IR A+ A + + + + RV RV A
Sbjct 69 LREECLRGKRSMLLETVFSVPEKLDFIRRAKEADFFIRFFFIGTDSPAINAARVARRVMA 128
Query 120 GGHDVPETKIRERHRRLAELVAQAITLADGATVYDNS 156
GGHDVP KI R++R A AI++ D A VYDNS
Sbjct 129 GGHDVPIAKIISRYQRSIANSALAISMVDRAYVYDNS 165
>gi|296123030|ref|YP_003630808.1| hypothetical protein Plim_2786 [Planctomyces limnophilus DSM
3776]
gi|296015370|gb|ADG68609.1| conserved hypothetical protein [Planctomyces limnophilus DSM
3776]
Length=187
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/169 (41%), Positives = 92/169 (55%), Gaps = 12/169 (7%)
Query 7 VAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAADTRARLI 66
+AGPNGAGKSTF LA G+ FVNAD +AKQ AY AA +A+ R LI
Sbjct 17 LAGPNGAGKSTFYDSFLADF--GLRFVNADLLAKQL-----NLAAYDAANLASSLRTSLI 69
Query 67 DLGRPFIAETVFSHP--SKLELIRTARTAGYTVVLHVLVI--PEGLAVERVRHRVAAGGH 122
F+ ETV S P K++ + T + GYTVVL + I PE ++ RV RV+ GGH
Sbjct 70 LQRESFVFETVLSDPVGEKVDTLATYQQLGYTVVLIFIRIGSPEE-SIRRVAMRVSQGGH 128
Query 123 DVPETKIRERHRRLAELVAQAITLADGATVYDNSRLAGPRIVAQFSGGG 171
D+P+ K+R R R + +AI ++DN LA P +A+ G
Sbjct 129 DIPDDKLRSRFERTQANLERAILRLPHVIIFDNHDLARPYQLAELYEHG 177
>gi|265756807|ref|ZP_06090795.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263233593|gb|EEZ19213.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length=191
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/167 (41%), Positives = 90/167 (54%), Gaps = 6/167 (3%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+ +L ++AG NGAGK+T L +L FVNADEIAK P +P+S A +A ++
Sbjct 1 MSKLYIIAGCNGAGKTTASYTVLPEILECREFVNADEIAKGLSPFNPSSVAIEAGRLMLK 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVI--PEGLAVERVRHRVA 118
L+ G F ET S S + LI+ AR GY+V L + PE LA+ERV+ RVA
Sbjct 61 RIGELLSAGVSFSVETTLSTRSYINLIQQARNQGYSVSLIYFWLNSPE-LAIERVKQRVA 119
Query 119 AGGHDVPETKIRERHRR-LAELVAQAITLADGATVYDNSRLAGPRIV 164
GGHDVP IR R+R L + D + DNS PR++
Sbjct 120 NGGHDVPAPIIRRRYRSGLENFFRIYMPCVDYWMLADNS--CTPRVI 164
>gi|298505008|gb|ADI83731.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
Length=204
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/157 (41%), Positives = 87/157 (56%), Gaps = 3/157 (1%)
Query 3 RLDLVAGPNGAGKSTFVALTLA-PLLPGIVFVNADEIAKQRWPDDPTSHA-YQAAQVAAD 60
+L ++AGPNG+GK+TF + L G +F+N DEIAK + D + A +AA A +
Sbjct 9 KLIVIAGPNGSGKTTFTSQVLRHDWSEGCIFINPDEIAKDEFGDWNSPEAVMKAAARAQE 68
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVIPE-GLAVERVRHRVAA 119
R + R + ETVFS P KL+ IR A+ A + + + + RV RV A
Sbjct 69 LREECLRGKRSMLLETVFSVPEKLDFIRRAKEADFFIRFFFIGTDSPAINAARVARRVMA 128
Query 120 GGHDVPETKIRERHRRLAELVAQAITLADGATVYDNS 156
GGHDVP KI R++R A AI++ D A VYDNS
Sbjct 129 GGHDVPIAKIISRYQRSIANSALAISMVDRAYVYDNS 165
>gi|237708151|ref|ZP_04538632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237723685|ref|ZP_04554166.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229437896|gb|EEO47973.1| hypothetical protein BSEG_04114 [Bacteroides dorei 5_1_36/D4]
gi|229457704|gb|EEO63425.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length=191
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/167 (40%), Positives = 90/167 (54%), Gaps = 6/167 (3%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+ +L ++AG NGAGK+T L +L FVNADEIAK P +P+S A +A ++
Sbjct 1 MSKLYIIAGCNGAGKTTASYTVLPEILECREFVNADEIAKGLSPFNPSSVAIEAGRLMLK 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVI--PEGLAVERVRHRVA 118
L+ G F ET S S + LI+ A+ GY+V L + PE LA+ERV+ RVA
Sbjct 61 RIGELLSAGVSFSVETTLSTRSYINLIQQAQNQGYSVSLIYFWLNSPE-LAIERVKQRVA 119
Query 119 AGGHDVPETKIRERHRR-LAELVAQAITLADGATVYDNSRLAGPRIV 164
GGHDVP IR R+R L + D + DNS PR++
Sbjct 120 NGGHDVPAPIIRRRYRSGLENFFRIYMPCVDYWMLADNS--CTPRVI 164
>gi|150004189|ref|YP_001298933.1| hypothetical protein BVU_1630 [Bacteroides vulgatus ATCC 8482]
gi|254884795|ref|ZP_05257505.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294775219|ref|ZP_06740743.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|319644143|ref|ZP_07998668.1| hypothetical protein HMPREF9011_04271 [Bacteroides sp. 3_1_40A]
gi|149932613|gb|ABR39311.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|254837588|gb|EET17897.1| hypothetical protein BSFG_04046 [Bacteroides sp. 4_3_47FAA]
gi|294450924|gb|EFG19400.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|317384265|gb|EFV65236.1| hypothetical protein HMPREF9011_04271 [Bacteroides sp. 3_1_40A]
Length=191
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/167 (40%), Positives = 90/167 (54%), Gaps = 6/167 (3%)
Query 1 VKRLDLVAGPNGAGKSTFVALTLAPLLPGIVFVNADEIAKQRWPDDPTSHAYQAAQVAAD 60
+ +L ++AG NGAGK+T L +L FVNADEIAK P +P+S A +A ++
Sbjct 1 MSKLYIIAGCNGAGKTTASYTVLPEILECREFVNADEIAKGLSPFNPSSVAIEAGRLMLK 60
Query 61 TRARLIDLGRPFIAETVFSHPSKLELIRTARTAGYTVVLHVLVI--PEGLAVERVRHRVA 118
L+ G F ET S S + LI+ A+ GY+V L + PE LA+ERV+ RVA
Sbjct 61 RIGELLSAGVSFSVETTLSTRSYINLIQQAQNQGYSVSLIYFWLNSPE-LAIERVKQRVA 119
Query 119 AGGHDVPETKIRERHRR-LAELVAQAITLADGATVYDNSRLAGPRIV 164
GGHDVP IR R+R L + D + DNS PR++
Sbjct 120 NGGHDVPAPIIRRRYRSGLENFFRIYMPCVDYWMLADNS--CTPRVI 164
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 208621361780
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40