BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0372c
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607513|ref|NP_214886.1| hypothetical protein Rv0372c [Mycob... 491 4e-137
gi|31791549|ref|NP_854042.1| hypothetical protein Mb0379c [Mycob... 489 2e-136
gi|289760483|ref|ZP_06519861.1| conserved hypothetical protein [... 488 4e-136
gi|306783000|ref|ZP_07421322.1| hypothetical protein TMCG_03057 ... 488 4e-136
gi|240172158|ref|ZP_04750817.1| hypothetical protein MkanA1_2278... 395 4e-108
gi|183980683|ref|YP_001848974.1| hypothetical protein MMAR_0658 ... 372 3e-101
gi|296167827|ref|ZP_06850012.1| carbon monoxide dehydrogenase F ... 371 4e-101
gi|118616014|ref|YP_904346.1| hypothetical protein MUL_0114 [Myc... 371 6e-101
gi|108797472|ref|YP_637669.1| hypothetical protein Mmcs_0492 [My... 334 7e-90
gi|118471343|ref|YP_885153.1| carbon monoxide dehydrogenase F pr... 330 1e-88
gi|281191486|gb|ADA57155.1| unknown [Mycobacterium sp. DSM 3803]... 315 3e-84
gi|111022200|ref|YP_705172.1| hypothetical protein RHA1_ro05233 ... 306 2e-81
gi|226364690|ref|YP_002782472.1| hypothetical protein ROP_52800 ... 303 1e-80
gi|325675992|ref|ZP_08155675.1| carbon monoxide dehydrogenase F ... 281 7e-74
gi|312140398|ref|YP_004007734.1| carbon monoxide dehydrogenase a... 280 2e-73
gi|302866401|ref|YP_003835038.1| hypothetical protein Micau_1914... 244 1e-62
gi|315502812|ref|YP_004081699.1| hypothetical protein ML5_2021 [... 243 2e-62
gi|116670585|ref|YP_831518.1| hypothetical protein Arth_2038 [Ar... 203 2e-50
gi|331696476|ref|YP_004332715.1| XshC-Cox1-family protein [Pseud... 200 1e-49
gi|284044482|ref|YP_003394822.1| hypothetical protein Cwoe_3028 ... 189 4e-46
gi|258655387|ref|YP_003204543.1| hypothetical protein Namu_5288 ... 176 2e-42
gi|221635969|ref|YP_002523845.1| xanthine dehydrogenase accessor... 160 2e-37
gi|269928690|ref|YP_003321011.1| hypothetical protein Sthe_2775 ... 142 6e-32
gi|85703607|ref|ZP_01034711.1| carbon monoxide dehydrogenase F p... 140 1e-31
gi|149202153|ref|ZP_01879126.1| carbon monoxide dehydrogenase F ... 138 9e-31
gi|298244374|ref|ZP_06968180.1| protein of unknown function DUF1... 135 5e-30
gi|339503285|ref|YP_004690705.1| XdhC /CoxI family-like protein ... 122 4e-26
gi|126739092|ref|ZP_01754786.1| hypothetical protein RSK20926_21... 119 3e-25
gi|56697248|ref|YP_167613.1| carbon monoxide dehydrogenase F pro... 117 2e-24
gi|333983880|ref|YP_004513090.1| XshC-Cox1-family protein [Methy... 115 4e-24
gi|114320721|ref|YP_742404.1| hypothetical protein Mlg_1567 [Alk... 114 1e-23
gi|89054583|ref|YP_510034.1| hypothetical protein Jann_2092 [Jan... 114 1e-23
gi|339628483|ref|YP_004720126.1| protein of unknown function DUF... 111 1e-22
gi|332667200|ref|YP_004449988.1| YHS domain-containing protein [... 110 2e-22
gi|313902891|ref|ZP_07836287.1| YHS domain-containing protein [T... 110 2e-22
gi|254453150|ref|ZP_05066587.1| carbon monoxide dehydrogenase F ... 110 2e-22
gi|315427097|dbj|BAJ48713.1| carbon monoxide dehydrogenase F pro... 108 1e-21
gi|317122325|ref|YP_004102328.1| YHS domain-containing protein [... 107 2e-21
gi|14601927|ref|NP_148472.1| CoxF-like protein [Aeropyrum pernix... 106 3e-21
gi|344943822|ref|ZP_08783108.1| XshC-Cox1-family protein [Methyl... 106 4e-21
gi|345304607|ref|YP_004826509.1| XshC-Cox1-family protein [Rhodo... 105 6e-21
gi|229582556|ref|YP_002840955.1| protein of unknown function DUF... 105 9e-21
gi|86139402|ref|ZP_01057971.1| carbon monoxide dehydrogenase F p... 104 9e-21
gi|119714498|ref|YP_921463.1| hypothetical protein Noca_0231 [No... 104 1e-20
gi|229578655|ref|YP_002837053.1| protein of unknown function DUF... 103 2e-20
gi|291295760|ref|YP_003507158.1| hypothetical protein Mrub_1376 ... 100 1e-19
gi|254441367|ref|ZP_05054860.1| xanthine dehydrogenase accessory... 100 3e-19
gi|296159229|ref|ZP_06842055.1| YHS domain protein [Burkholderia... 99.4 4e-19
gi|329903337|ref|ZP_08273430.1| Carbon monoxide dehydrogenase F ... 99.4 4e-19
gi|159043764|ref|YP_001532558.1| hypothetical protein Dshi_1215 ... 97.8 1e-18
>gi|15607513|ref|NP_214886.1| hypothetical protein Rv0372c [Mycobacterium tuberculosis H37Rv]
gi|15839758|ref|NP_334795.1| hypothetical protein MT0387 [Mycobacterium tuberculosis CDC1551]
gi|121636285|ref|YP_976508.1| hypothetical protein BCG_0410c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
70 more sequence titles
Length=251
Score = 491 bits (1264), Expect = 4e-137, Method: Compositional matrix adjust.
Identities = 251/251 (100%), Positives = 251/251 (100%), Gaps = 0/251 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK
Sbjct 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG
Sbjct 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG
Sbjct 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG
Sbjct 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
Query 241 RKALADENGGA 251
RKALADENGGA
Sbjct 241 RKALADENGGA 251
>gi|31791549|ref|NP_854042.1| hypothetical protein Mb0379c [Mycobacterium bovis AF2122/97]
gi|31617135|emb|CAD93242.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
Length=251
Score = 489 bits (1258), Expect = 2e-136, Method: Compositional matrix adjust.
Identities = 250/251 (99%), Positives = 250/251 (99%), Gaps = 0/251 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK
Sbjct 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG
Sbjct 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASH GPEAEIIRTALDNGVGYVG
Sbjct 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHSGPEAEIIRTALDNGVGYVG 180
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG
Sbjct 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
Query 241 RKALADENGGA 251
RKALADENGGA
Sbjct 241 RKALADENGGA 251
>gi|289760483|ref|ZP_06519861.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289707989|gb|EFD72005.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=251
Score = 488 bits (1256), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 250/251 (99%), Positives = 250/251 (99%), Gaps = 0/251 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
MSISDRAAQLVAARTPFVRATVVRAQQPTSARPG EAILLADGTIEGFVGGHCAQNSVRK
Sbjct 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGGEAILLADGTIEGFVGGHCAQNSVRK 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG
Sbjct 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG
Sbjct 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG
Sbjct 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
Query 241 RKALADENGGA 251
RKALADENGGA
Sbjct 241 RKALADENGGA 251
>gi|306783000|ref|ZP_07421322.1| hypothetical protein TMCG_03057 [Mycobacterium tuberculosis SUMu003]
gi|306796107|ref|ZP_07434409.1| hypothetical protein TMFG_01663 [Mycobacterium tuberculosis SUMu006]
gi|306801967|ref|ZP_07438635.1| hypothetical protein TMHG_03385 [Mycobacterium tuberculosis SUMu008]
gi|308332167|gb|EFP21018.1| hypothetical protein TMCG_03057 [Mycobacterium tuberculosis SUMu003]
gi|308343432|gb|EFP32283.1| hypothetical protein TMFG_01663 [Mycobacterium tuberculosis SUMu006]
gi|308351269|gb|EFP40120.1| hypothetical protein TMHG_03385 [Mycobacterium tuberculosis SUMu008]
Length=251
Score = 488 bits (1256), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 250/251 (99%), Positives = 250/251 (99%), Gaps = 0/251 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK
Sbjct 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AAMGVLQAGESVLLRVLPDGDVH PEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG
Sbjct 61 AAMGVLQAGESVLLRVLPDGDVHVPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG
Sbjct 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG
Sbjct 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
Query 241 RKALADENGGA 251
RKALADENGGA
Sbjct 241 RKALADENGGA 251
>gi|240172158|ref|ZP_04750817.1| hypothetical protein MkanA1_22784 [Mycobacterium kansasii ATCC
12478]
Length=291
Score = 395 bits (1014), Expect = 4e-108, Method: Compositional matrix adjust.
Identities = 200/236 (85%), Positives = 217/236 (92%), Gaps = 0/236 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M+IS+RA QL+AARTPFV A VVRAQ P SA PGDEAILLADGTIEGFVGG CAQNSVRK
Sbjct 2 MTISERARQLLAARTPFVHARVVRAQPPASAYPGDEAILLADGTIEGFVGGQCAQNSVRK 61
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+G LQAGESVLLRVLPDGDVHFPEAPGACVVVNPCL+GG+LEIFLTPQLPAPLI++YG
Sbjct 62 AALGALQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLSGGALEIFLTPQLPAPLIRVYG 121
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TPIADAL++LCG+LGYDARRDT+PA A+PTA+VIASHGGPEAEIIR ALDNGVGY+G
Sbjct 122 TTPIADALVQLCGVLGYDARRDTEPAAAAAVPTALVIASHGGPEAEIIRAALDNGVGYIG 181
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGG 236
LVAS VRGASIL SLDLS+ ERAR+HTPVGL IGAKTPAEIAVSIAAELIA LR G
Sbjct 182 LVASKVRGASILSSLDLSEGERARIHTPVGLPIGAKTPAEIAVSIAAELIAALRKG 237
>gi|183980683|ref|YP_001848974.1| hypothetical protein MMAR_0658 [Mycobacterium marinum M]
gi|183174009|gb|ACC39119.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=294
Score = 372 bits (954), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 203/246 (83%), Positives = 222/246 (91%), Gaps = 1/246 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M+IS+RAAQL+AARTPFV ATVVRAQ PTSA PGDEAILL DGTIEGFVGG CAQNSVRK
Sbjct 1 MTISERAAQLLAARTPFVHATVVRAQPPTSAYPGDEAILLPDGTIEGFVGGQCAQNSVRK 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+GVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCL+GGSLEIFLTPQLPAPL++IYG
Sbjct 61 AALGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLSGGSLEIFLTPQLPAPLVRIYG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TPIA+ALIE+CG+LGYDARRD+DP ALPTA+VIASHGGPEAE IR ALDNGVGY+G
Sbjct 121 ATPIAEALIEVCGVLGYDARRDSDPVGAAALPTAVVIASHGGPEAENIRAALDNGVGYIG 180
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPRG 240
LVAS VRGA++LDSL LS ERAR+ TPVGLAIGAKTPAEIAV+IAAE+IA +R GG G
Sbjct 181 LVASKVRGAAVLDSLGLSATERARIRTPVGLAIGAKTPAEIAVAIAAEIIAAVRAGG-GG 239
Query 241 RKALAD 246
R A D
Sbjct 240 RPAPVD 245
>gi|296167827|ref|ZP_06850012.1| carbon monoxide dehydrogenase F protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897025|gb|EFG76646.1| carbon monoxide dehydrogenase F protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=300
Score = 371 bits (953), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 190/236 (81%), Positives = 210/236 (89%), Gaps = 4/236 (1%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
+SIS+RA QL+AARTPFV ATVVRAQ P SA PGDEAILLADGTIEGFVGG CAQNSVRK
Sbjct 13 LSISERARQLIAARTPFVHATVVRAQPPASAYPGDEAILLADGTIEGFVGGQCAQNSVRK 72
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+G LQAGESVLLRVLPDGDVHFPEAPGACVVVNPCL+GGSLEIFLTPQLP P+++IYG
Sbjct 73 AALGALQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLSGGSLEIFLTPQLPPPMVRIYG 132
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TPIADAL +LC +LGYDAR D D A+ TA+VIASHGGPEAEIIR ALD+GVGY+G
Sbjct 133 ATPIADALTQLCQVLGYDARTDADLAEA----TAVVIASHGGPEAEIIRAALDHGVGYIG 188
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGG 236
LVAS VRGA+ILD L+LS ERAR+H+PVGL IGAKTPAEIAVSIAAEL+A +RGG
Sbjct 189 LVASRVRGAAILDGLELSCDERARIHSPVGLDIGAKTPAEIAVSIAAELVAAVRGG 244
>gi|118616014|ref|YP_904346.1| hypothetical protein MUL_0114 [Mycobacterium ulcerans Agy99]
gi|118568124|gb|ABL02875.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=259
Score = 371 bits (952), Expect = 6e-101, Method: Compositional matrix adjust.
Identities = 185/218 (85%), Positives = 201/218 (93%), Gaps = 0/218 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M+IS+RAAQL+AARTPFV ATVVRAQ PTSA PGDEAILL DGTIEGFVGG CAQNSVRK
Sbjct 3 MTISERAAQLLAARTPFVHATVVRAQPPTSAYPGDEAILLPDGTIEGFVGGQCAQNSVRK 62
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+GVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCL+GGSLEIFLTPQLPAPL++IYG
Sbjct 63 AALGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLSGGSLEIFLTPQLPAPLVRIYG 122
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TPIA+ALIE+CG+LGYDARRD+DP ALPTA+VIASHGGPEAE IR ALDNGVGY+G
Sbjct 123 ATPIAEALIEVCGVLGYDARRDSDPVGAAALPTAVVIASHGGPEAENIRAALDNGVGYIG 182
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTP 218
LVAS VRGA++LDSL LS ERAR+ TPVGLAIGAKTP
Sbjct 183 LVASKVRGAAVLDSLGLSATERARIRTPVGLAIGAKTP 220
>gi|108797472|ref|YP_637669.1| hypothetical protein Mmcs_0492 [Mycobacterium sp. MCS]
gi|119866557|ref|YP_936509.1| hypothetical protein Mkms_0503 [Mycobacterium sp. KMS]
gi|126433093|ref|YP_001068784.1| hypothetical protein Mjls_0481 [Mycobacterium sp. JLS]
gi|108767891|gb|ABG06613.1| protein of unknown function DUF182 [Mycobacterium sp. MCS]
gi|119692646|gb|ABL89719.1| protein of unknown function DUF182 [Mycobacterium sp. KMS]
gi|126232893|gb|ABN96293.1| protein of unknown function DUF182 [Mycobacterium sp. JLS]
Length=256
Score = 334 bits (857), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 170/234 (73%), Positives = 200/234 (86%), Gaps = 5/234 (2%)
Query 2 SISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKA 61
++ DRA QL+ R PFVRATVVRAQQPTSA PGDEAILL+DGTIEGF+GG CAQ+SVRKA
Sbjct 6 TMHDRAQQLLQTRIPFVRATVVRAQQPTSAHPGDEAILLSDGTIEGFIGGECAQSSVRKA 65
Query 62 AMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGE 121
A+G LQA +SVLLRVLPDGDVHFP+APGACVVVNPCL+GG+LEIFL PQ+PAPL++I G+
Sbjct 66 ALGALQANQSVLLRVLPDGDVHFPDAPGACVVVNPCLSGGALEIFLVPQVPAPLVRICGD 125
Query 122 TPIADALIELCGLLGYDARRDT-DPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TPIA+AL ++C +LGY+ R +PA TA+VIASHGGPEAE+IR ALD VGY+G
Sbjct 126 TPIAEALAQVCAVLGYEVTRSAGEPAGA----TAVVIASHGGPEAEMIRAALDADVGYIG 181
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLR 234
LVAS VRGA++L+ L L+ AERARVHTPVGL IGA+T AEIAVSIAAELIA +R
Sbjct 182 LVASRVRGAAVLEGLHLTAAERARVHTPVGLPIGARTAAEIAVSIAAELIAAIR 235
>gi|118471343|ref|YP_885153.1| carbon monoxide dehydrogenase F protein [Mycobacterium smegmatis
str. MC2 155]
gi|118172630|gb|ABK73526.1| carbon monoxide dehydrogenase F protein [Mycobacterium smegmatis
str. MC2 155]
Length=245
Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/239 (72%), Positives = 201/239 (85%), Gaps = 3/239 (1%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M + DR +L ARTPFV ATVVRAQQPTSA PGDEAILL DGTIEGFVGGHCAQNSVR+
Sbjct 7 MRLHDRVTELRRARTPFVHATVVRAQQPTSAHPGDEAILLPDGTIEGFVGGHCAQNSVRQ 66
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+G LQ G+SVLLRVLPDGDV FPE PGACVVVN CL+GG+LEIFL PQ+PAPL+ ++G
Sbjct 67 AALGALQVGQSVLLRVLPDGDVSFPETPGACVVVNHCLSGGALEIFLDPQVPAPLVGVFG 126
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDAL--PTAIVIASHGGPEAEIIRTALDNGVGY 178
+PIADAL+E+ +LGYD RR D D AL +A+VIAS GGPEA++IR ALD G+GY
Sbjct 127 GSPIADALVEVTAVLGYDVRR-LDAPDPSALDGASALVIASLGGPEADLIRAALDAGIGY 185
Query 179 VGLVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGG 237
+GLVAS RG++ILD L+L+++ERAR+HTPVGL IGA+TPAEIAVSIAAE+IAT+R G
Sbjct 186 IGLVASRRRGSAILDGLNLTESERARMHTPVGLDIGARTPAEIAVSIAAEVIATVRAHG 244
>gi|281191486|gb|ADA57155.1| unknown [Mycobacterium sp. DSM 3803]
gi|281191496|gb|ADA57165.1| unknown [Mycobacterium sp. DSM 3803]
Length=258
Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/239 (69%), Positives = 193/239 (81%), Gaps = 2/239 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M+I++RA +L ARTPFV ATVVRAQQP SA PGDEAILL+DGTIEGFVGG CAQ SVR+
Sbjct 1 MTITERARELRLARTPFVHATVVRAQQPASAHPGDEAILLSDGTIEGFVGGQCAQGSVRE 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
A +G LQAG SVLLRVLP GDV FP+ PGACVVVNPCL+GG+LEIFL PQ+PAPL++I G
Sbjct 61 AGLGALQAGSSVLLRVLPAGDVDFPDTPGACVVVNPCLSGGALEIFLAPQVPAPLVRICG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TPIA+AL ++ LGYD + TD D TA+VIA+HGGPEAE IR ALD VGY+G
Sbjct 121 GTPIAEALADITVALGYDVQ--TDDYDVSGPVTAVVIATHGGPEAETIRAALDADVGYIG 178
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPR 239
LVAS +RGA+ILD L L++ ER RVHTPVGL IGA+TPAEIA+SI AE+I +R GG +
Sbjct 179 LVASEIRGAAILDELGLTECERKRVHTPVGLPIGAETPAEIAISILAEVIREIRTGGAK 237
>gi|111022200|ref|YP_705172.1| hypothetical protein RHA1_ro05233 [Rhodococcus jostii RHA1]
gi|110821730|gb|ABG97014.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=297
Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/239 (68%), Positives = 184/239 (77%), Gaps = 0/239 (0%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M + +RAAQL R PFVRATVVRAQ PTS+ GDEAILL DGTIEGFVGG CAQNSVR
Sbjct 1 MDLKERAAQLTRDRRPFVRATVVRAQPPTSSHTGDEAILLQDGTIEGFVGGQCAQNSVRM 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+G L ESVLLRVLPDG V FPEAPGA VVVNPCL+GG++EIFL PQLP PL++I+G
Sbjct 61 AALGALATNESVLLRVLPDGAVQFPEAPGASVVVNPCLSGGAMEIFLEPQLPPPLVRIFG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TPIA AL + LLG+ D + TA+V+A HGGPEAE+IR ALD GVGYVG
Sbjct 121 TTPIAQALGGIAELLGFTVEHDDAGIGQFSGTTAVVLAGHGGPEAEVIRAALDAGVGYVG 180
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGGPR 239
LVAS RG +ILD+L L++ ERARVHTPVGL IGA+T AEIAVSIAAEL+ LR G R
Sbjct 181 LVASRTRGGAILDTLGLTEPERARVHTPVGLDIGARTAAEIAVSIAAELVQELRTAGLR 239
>gi|226364690|ref|YP_002782472.1| hypothetical protein ROP_52800 [Rhodococcus opacus B4]
gi|226243179|dbj|BAH53527.1| hypothetical protein [Rhodococcus opacus B4]
Length=294
Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/255 (66%), Positives = 191/255 (75%), Gaps = 15/255 (5%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M + +RAAQLV R PFV ATVVRAQ PTS+ GDEAILL DGTIEGFVGG CAQNSVR
Sbjct 1 MDLKERAAQLVRDRRPFVHATVVRAQPPTSSHTGDEAILLQDGTIEGFVGGQCAQNSVRT 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+GVL + ESVLLRVLPDG V FPE PGA VVVNPCL+GG++EIFL PQLP PL+++ G
Sbjct 61 AALGVLASNESVLLRVLPDGAVQFPETPGASVVVNPCLSGGAMEIFLEPQLPPPLVRVCG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALP----TAIVIASHGGPEAEIIRTALDNGV 176
TPIA L + LLGY D DA P TA+V+A HGGPEAE+IR ALD GV
Sbjct 121 TTPIAQCLAGIAELLGYAVEHD------DAGPFSGTTAVVLAGHGGPEAEVIRAALDAGV 174
Query 177 GYVGLVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGG 236
GYVGLVAS RG +ILD+L L+++ERARVHTPVGL IGA+T AEIAVSIAAEL+ LR
Sbjct 175 GYVGLVASRTRGGAILDTLGLTESERARVHTPVGLDIGARTSAEIAVSIAAELVQQLRRA 234
Query 237 GPRGRKALADENGGA 251
G R A E+G A
Sbjct 235 GLR-----APEDGSA 244
>gi|325675992|ref|ZP_08155675.1| carbon monoxide dehydrogenase F protein [Rhodococcus equi ATCC
33707]
gi|325553230|gb|EGD22909.1| carbon monoxide dehydrogenase F protein [Rhodococcus equi ATCC
33707]
Length=294
Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 148/236 (63%), Positives = 181/236 (77%), Gaps = 3/236 (1%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M +S RAA+L R PFVRATVVRAQQPTS RPGD AI+L DG IEGFVGGHC QNSVR+
Sbjct 1 MDLSARAAELTGERRPFVRATVVRAQQPTSTRPGDRAIVLPDGMIEGFVGGHCVQNSVRR 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+ + +GESVLLR+LPDG FP+APGA VVVNPCL+GG++EIFL P LPAP++++ G
Sbjct 61 AALDAVASGESVLLRILPDGGPAFPDAPGADVVVNPCLSGGAMEIFLEPCLPAPIVRVAG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TP+ADA+ + +L D RR +A A+++AS GG E +IR ALD+GVGYVG
Sbjct 121 ATPVADAVARVLEVLDVDVRRGISVGGGEA---AVIVASLGGDEPAVIREALDSGVGYVG 177
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGG 236
LVAS+ RGA+I+D LDL + ERA VHTP GL IGA+TP EIAVSIAAEL+ +R G
Sbjct 178 LVASSRRGAAIVDELDLDEPERAVVHTPAGLPIGARTPGEIAVSIAAELVRAIRIG 233
>gi|312140398|ref|YP_004007734.1| carbon monoxide dehydrogenase accesory protein [Rhodococcus equi
103S]
gi|311889737|emb|CBH49054.1| putative carbon monoxide dehydrogenase accesory protein [Rhodococcus
equi 103S]
Length=294
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/236 (63%), Positives = 180/236 (77%), Gaps = 3/236 (1%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M +S RAA+L R PFVRA VVRAQQPTS PGD AI+L DG IEGFVGGHC QNSVR+
Sbjct 1 MDLSARAAELTGERRPFVRAMVVRAQQPTSTWPGDRAIVLPDGMIEGFVGGHCVQNSVRR 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
AA+ + +GESVLLR+LPDG FP+APGA VVVNPCL+GG++EIFL P LPAP++++ G
Sbjct 61 AALDAVASGESVLLRILPDGGPAFPDAPGADVVVNPCLSGGAMEIFLEPCLPAPIVRVAG 120
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVG 180
TP+ADA+ + +L D RR D +A A+++AS GG E +IR ALD+GVGYVG
Sbjct 121 ATPVADAVARVLEVLDVDVRRGISVGDGEA---AVIVASLGGDEPAVIREALDSGVGYVG 177
Query 181 LVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGG 236
LVAS+ RGA+I+D LDL + ERA VHTP GL IGA+TP EIAVSIAAEL+ +R G
Sbjct 178 LVASSRRGAAIVDELDLDEPERAVVHTPAGLPIGARTPGEIAVSIAAELVRAIRIG 233
>gi|302866401|ref|YP_003835038.1| hypothetical protein Micau_1914 [Micromonospora aurantiaca ATCC
27029]
gi|302569260|gb|ADL45462.1| protein of unknown function DUF182 [Micromonospora aurantiaca
ATCC 27029]
Length=288
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/236 (56%), Positives = 170/236 (73%), Gaps = 4/236 (1%)
Query 2 SISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKA 61
+I+ RA L +R PFV ATVVRAQ PTSARPGD+A++L DGTI+GFVGG CA++SVR A
Sbjct 3 TIARRARDLTVSRAPFVHATVVRAQDPTSARPGDDAVILPDGTIDGFVGGMCAESSVRAA 62
Query 62 AMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGE 121
A+ L+ G+++LLRVLPDG FP+ PGA VVVNPC +GG+LEIFL P LP P++ + G+
Sbjct 63 ALDALRDGKALLLRVLPDGAPAFPDTPGARVVVNPCHSGGALEIFLRPVLPVPVLGLVGD 122
Query 122 TPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVGL 181
TPI+ A+ L L ++ D + TA+V+A G E + +R ALD GVG+V L
Sbjct 123 TPISAAVATLAAFLDFEVATSGDHSGA----TAVVVAGLGKGEQDAVRAALDAGVGHVAL 178
Query 182 VASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGG 237
VAS RGA++LD L LSDAERARV TP GL IGA++P EIA+SI AE++ LR G
Sbjct 179 VASRTRGAAVLDELALSDAERARVRTPAGLEIGARSPQEIALSIMAEVVRALRVDG 234
>gi|315502812|ref|YP_004081699.1| hypothetical protein ML5_2021 [Micromonospora sp. L5]
gi|315409431|gb|ADU07548.1| protein of unknown function DUF182 [Micromonospora sp. L5]
Length=288
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/236 (56%), Positives = 169/236 (72%), Gaps = 4/236 (1%)
Query 2 SISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKA 61
+I+ R L +R PFV ATVVRAQ PTSARPGD+A++L DGTIEGFVGG CA++SVR A
Sbjct 3 TIARRTHDLTVSRAPFVHATVVRAQDPTSARPGDDAVILPDGTIEGFVGGMCAESSVRAA 62
Query 62 AMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGE 121
A+ L+ G+++LLRVLPDG FP+ PGA VVVNPC +GG+LEIFL P LP P++ + G+
Sbjct 63 ALDALRDGKALLLRVLPDGAPAFPDTPGARVVVNPCHSGGALEIFLRPVLPVPVLGLVGD 122
Query 122 TPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVGL 181
TPI+ A+ L L ++ D + TA+V+A G E + +R ALD GVG++ L
Sbjct 123 TPISAAVATLAAFLDFEVATSGDHSGA----TAVVVAGLGKGEQDAVRAALDAGVGHIAL 178
Query 182 VASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGG 237
VAS RGA++LD L LSDAERARV TP GL IGA++P EIA+SI AE++ LR G
Sbjct 179 VASRTRGAAVLDELALSDAERARVRTPAGLEIGARSPQEIALSIMAEVVRALRVDG 234
>gi|116670585|ref|YP_831518.1| hypothetical protein Arth_2038 [Arthrobacter sp. FB24]
gi|116610694|gb|ABK03418.1| protein of unknown function DUF182 [Arthrobacter sp. FB24]
Length=301
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/234 (50%), Positives = 157/234 (68%), Gaps = 8/234 (3%)
Query 2 SISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKA 61
+++ RA +L++ R PFVRATVVRAQ+PTSA GD A++L+ G + GFVGG+C + SVR+
Sbjct 7 TLAARATELISRREPFVRATVVRAQRPTSAHAGDNALILSTGEMNGFVGGNCVEASVREY 66
Query 62 AMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGE 121
++ L A E +LLRV+P H E GA V NPCL+GG++EIFL P +PAP + + G
Sbjct 67 SLKALAAQEPLLLRVVPGEPSHRSEE-GAVEVSNPCLSGGAVEIFLEPHIPAPRVLVVGT 125
Query 122 TPIADALIELCGLLGYDAR----RDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVG 177
TP+A AL L +G + DP DA A+++ASHG E + AL GV
Sbjct 126 TPVAQALASLGAGVGLQMELTDGQAADPRPDDA---ALIVASHGREEEGALEGALRAGVP 182
Query 178 YVGLVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIA 231
YV LVAS VRGA++L SLD+ ++ R+RV +P GL +GA+TP EIAVSI A+LIA
Sbjct 183 YVALVASEVRGAAVLASLDVDESLRSRVFSPAGLDLGARTPGEIAVSILAQLIA 236
>gi|331696476|ref|YP_004332715.1| XshC-Cox1-family protein [Pseudonocardia dioxanivorans CB1190]
gi|326951165|gb|AEA24862.1| XshC-Cox1-family protein [Pseudonocardia dioxanivorans CB1190]
Length=305
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/224 (51%), Positives = 156/224 (70%), Gaps = 12/224 (5%)
Query 14 RTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGVLQAGESVL 73
R P+V ATVVRA++PTSA+PGD A++L DG+I+GFVGG CA+++VR + +L +GES L
Sbjct 17 RVPYVLATVVRAERPTSAKPGDSALVLPDGSIDGFVGGVCAESTVRLEGLRLLASGESEL 76
Query 74 LRVLPDG-DVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIADALIELC 132
LRV P+ D PE G VV NPCL+GG+LEIFL +P L++++G++PIA A+ ++
Sbjct 77 LRVTPEAADAVAPE--GVRVVENPCLSGGTLEIFLEAVIPPVLVRVFGDSPIARAIAQVG 134
Query 133 GLLGYDARRDTDPADTDALP-----TAIVIASHGGPEAEIIRTALDNGVGYVGLVASTVR 187
L D + D D ALP TA+V+A+HG E ++R AL V YV LVAS R
Sbjct 135 TALDLDVQNDVD----AALPVAPDTTAVVVAAHGRDEVPVLRAALAARVPYVALVASPRR 190
Query 188 GASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIA 231
A++L LD++D ERAR+H P GL IGA+TP EIA+SI AE++A
Sbjct 191 SAAVLAELDVADDERARIHAPAGLDIGARTPHEIALSIYAEIVA 234
>gi|284044482|ref|YP_003394822.1| hypothetical protein Cwoe_3028 [Conexibacter woesei DSM 14684]
gi|283948703|gb|ADB51447.1| protein of unknown function DUF182 [Conexibacter woesei DSM 14684]
Length=255
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/233 (51%), Positives = 149/233 (64%), Gaps = 3/233 (1%)
Query 2 SISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKA 61
S++ A ++ A PFV ATVVRAQ PTS GD A++ ADGTIEGFVGGHCAQ SVR
Sbjct 5 SLARAAQRMRAGGEPFVHATVVRAQHPTSVHAGDAALVHADGTIEGFVGGHCAQASVRLH 64
Query 62 AMGVLQAGESVLLRVLPDGDVHFPEAPGACVVV-NPCLAGGSLEIFLTPQLPAPLIQIYG 120
A VL+ GE +LLR++P+ E+ G VV N CL+GG+ EIFL P PAP + + G
Sbjct 65 AARVLETGEPLLLRIVPEAVADVEESIGGIVVEHNHCLSGGAFEIFLEPWRPAPRMVVVG 124
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALP--TAIVIASHGGPEAEIIRTALDNGVGY 178
+ P A AL EL G++A A P A V+ASHG E + TAL GV Y
Sbjct 125 DAPTARALAELARAAGWEAALVAADAVARPQPRDEAFVVASHGEGEERALCTALTEGVPY 184
Query 179 VGLVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIA 231
VGLVAS RG ++ +LD+ D RAR+H P GLAIGA+TP E+A++I A+LIA
Sbjct 185 VGLVASRRRGEAVRAALDVPDELRARLHVPAGLAIGARTPGEVAIAILAQLIA 237
>gi|258655387|ref|YP_003204543.1| hypothetical protein Namu_5288 [Nakamurella multipartita DSM
44233]
gi|258558612|gb|ACV81554.1| protein of unknown function DUF182 [Nakamurella multipartita
DSM 44233]
Length=372
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/248 (46%), Positives = 156/248 (63%), Gaps = 23/248 (9%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
+ +RAAQL A PFVRA VV A++PTSAR GDEAI+ ADG+IEGFVGG CA+++VR
Sbjct 4 QDLDERAAQLRTAGVPFVRARVVLARRPTSARAGDEAIVHADGSIEGFVGGTCAESTVRV 63
Query 61 AAMGVLQAGESVLLRVLP-------------DGDVHFPEAPGACVVVNPCLAGGSLEIFL 107
++ +L E +LLR++P DG E G V NPCL+GG+LEIFL
Sbjct 64 QSLRLLGRPEPLLLRIVPDDGVGRGDGDGHEDGAA---EPAGTLTVHNPCLSGGALEIFL 120
Query 108 TPQLPAPLIQIYGETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEI 167
P +PAPL+ ++G+ P+A AL ++ GY R A T A+V+ASHG E +
Sbjct 121 DPVVPAPLVLVHGDGPVAQALRQVTEAAGY--RCAEAAAQTVPGADAVVVASHGRDETAV 178
Query 168 IRTALDNGVGYVGLVASTVRGASILDSL-----DLSDAERARVHTPVGLAIGAKTPAEIA 222
+ A++ GVGY+GL+AS RGA++L + DL++ R RV TP GL +GA+T EIA
Sbjct 179 LAAAIEAGVGYIGLIASRRRGAAVLAEIAAARPDLAEQLRQRVDTPAGLDLGARTAGEIA 238
Query 223 VSIAAELI 230
VS+ A ++
Sbjct 239 VSVLAAIV 246
>gi|221635969|ref|YP_002523845.1| xanthine dehydrogenase accessory factor, putative subfamily,
putative [Thermomicrobium roseum DSM 5159]
gi|221157535|gb|ACM06653.1| xanthine dehydrogenase accessory factor, putative subfamily,
putative [Thermomicrobium roseum DSM 5159]
Length=368
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/245 (45%), Positives = 136/245 (56%), Gaps = 20/245 (8%)
Query 7 AAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGVL 66
AA L PFV ATV+ Q PTSA+PG + I+ ADG + G+VGG CAQ +V + AM L
Sbjct 51 AADLRQRGVPFVLATVIWTQSPTSAKPGAKGIVTADGALFGWVGGSCAQPAVMREAMAAL 110
Query 67 QAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIAD 126
G + +LR+ P G P PG V C + G+LEIFL P LPAP + IYGE+P+AD
Sbjct 111 HDGRARILRIDPVGSPDQPPRPGVIVAPMTCHSEGALEIFLEPFLPAPQLLIYGESPVAD 170
Query 127 ALIELCGLLGY----------------DARRDT-DPADT-DALPTAIVIASHGGPEAEII 168
AL+ L +GY D D+ DP D PT V+AS G + + I
Sbjct 171 ALLRLGKAMGYWVVALRPGASGAPAEVDEWLDSLDPGDRPRRRPTVAVVASLGAYDEDAI 230
Query 169 RTALDNGVGYVGLVASTVRGASILDSL--DLSDAERARVHTPVGLAIGAKTPAEIAVSIA 226
AL GV +V LVAS R +I ++L L + RV P GL I A +P EIAVSI
Sbjct 231 EAALRAGVTFVELVASRKRFRAIRETLARSLPETLLERVKAPAGLDIQATSPEEIAVSIL 290
Query 227 AELIA 231
AELIA
Sbjct 291 AELIA 295
>gi|269928690|ref|YP_003321011.1| hypothetical protein Sthe_2775 [Sphaerobacter thermophilus DSM
20745]
gi|269788047|gb|ACZ40189.1| protein of unknown function DUF182 [Sphaerobacter thermophilus
DSM 20745]
Length=346
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 105/251 (42%), Positives = 141/251 (57%), Gaps = 23/251 (9%)
Query 3 ISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAA 62
I RAA L A PFV ATVV +Q+PTSARPG + I+ DG + G+VGG CAQ +V + A
Sbjct 23 IFARAAALKQAGEPFVLATVVWSQRPTSARPGAKGIVTPDGALFGWVGGSCAQPTVVRQA 82
Query 63 MGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGET 122
+ L G LR+ PDG E P V C +GG+LE+FL P LP + ++GE+
Sbjct 83 LEALAEGRPRTLRLSPDGRGS-AERPDVVVAPLTCHSGGALEVFLEPFLPPLRLIVFGES 141
Query 123 PIADALIELCGLLGYD--ARR----DTDPADTDALPTAI-------------VIASHGGP 163
P+ADALI L ++GY A R ++ PA+ D + ++ V+A+ G
Sbjct 142 PVADALIRLGHVMGYRVIASRPGAPESAPAEADVVLDSLDVVAAAAGGPAVAVVATMGVY 201
Query 164 EAEIIRTALDNGVGYVGLVASTVRGASILDSLDLS---DAERARVHTPVGLAIGAKTPAE 220
+ + + AL GVG+V LVAS R ++ D+L S D ARV P G I A P E
Sbjct 202 DEDAVEQALRAGVGFVALVASGRRFETMRDALRTSSIPDDLLARVKAPAGFDIAATAPEE 261
Query 221 IAVSIAAELIA 231
IAVSI AE+IA
Sbjct 262 IAVSILAEIIA 272
>gi|85703607|ref|ZP_01034711.1| carbon monoxide dehydrogenase F protein [Roseovarius sp. 217]
gi|85672535|gb|EAQ27392.1| carbon monoxide dehydrogenase F protein [Roseovarius sp. 217]
Length=251
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/240 (40%), Positives = 138/240 (58%), Gaps = 16/240 (6%)
Query 9 QLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGVLQ 67
+L +ARTP+ ATV+R T+A+PG A++LADGTI EG++GG C +V +AA +
Sbjct 12 RLASARTPYAIATVIRTVGATAAKPGARALILADGTISEGWIGGGCVHGAVARAAQSAIA 71
Query 68 AGESVLLRVLPDGDVHFPE-APGAC-----VVVNPCLAGGSLEIFLTPQLPAPLIQIYGE 121
G L+ + PD D+ PG + N C + G++E+F+ P LP P + I G
Sbjct 72 EGTPRLISIQPDEDLTAQGLTPGQTHQGRDIARNGCPSKGAMEVFVEPVLPRPELVILGA 131
Query 122 TPIADALIELCGLLGYDARRDTDPADTDALPTA-----IVIASHGGPEAEIIRTALDNGV 176
+P+A AL L G+D T P D+ LPTA +VIA+ G + + +RTAL +
Sbjct 132 SPVALALATLAQPFGFDI---TTP-DSGPLPTANHARMVVIATQGAGDLDALRTALASEA 187
Query 177 GYVGLVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRGG 236
Y+G VAS + A++ LD + AR+ +P GLAI A TP EIA+SI A+++ R G
Sbjct 188 DYIGFVASRRKFATLAARLDATPEALARIQSPAGLAINAVTPEEIALSILAQIVQHRRQG 247
>gi|149202153|ref|ZP_01879126.1| carbon monoxide dehydrogenase F protein [Roseovarius sp. TM1035]
gi|149144251|gb|EDM32282.1| carbon monoxide dehydrogenase F protein [Roseovarius sp. TM1035]
Length=255
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/241 (40%), Positives = 137/241 (57%), Gaps = 14/241 (5%)
Query 9 QLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGVLQ 67
+L A RTP+ ATV+R T+A+PG A++LADGTI EG++GG C + +V +AA L
Sbjct 12 RLNATRTPYAIATVIRTVGATAAKPGARALILADGTISEGWIGGGCVRGAVARAAQSALA 71
Query 68 AGESVLLRVLPDGDVHFP------EAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGE 121
G L+ + PD D+ G + N C + G++EIF+ P LP P + I G
Sbjct 72 EGTPRLISIQPDEDLTAQGLTPGEHHQGRDIARNGCPSKGAMEIFVEPVLPRPELVILGA 131
Query 122 TPIADALIELCGLLGYDARR-DTDPADTDALPTA-----IVIASHGGPEAEIIRTALDNG 175
+P+A AL L G+D DT P D+ LP A +VIA+ G + + +RTAL +
Sbjct 132 SPVALALATLALPFGFDITTPDTQP-DSGPLPAANHARMVVIATQGAGDLDALRTALASD 190
Query 176 VGYVGLVASTVRGASILDSLDLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLRG 235
Y+G VAS + ++ LD + ARVH+P GLAI A TP EIA+SI A+++ R
Sbjct 191 ADYIGFVASRRKFTTLAARLDATPETLARVHSPAGLAINAVTPEEIALSILAQIVQHRRQ 250
Query 236 G 236
G
Sbjct 251 G 251
>gi|298244374|ref|ZP_06968180.1| protein of unknown function DUF182 [Ktedonobacter racemifer DSM
44963]
gi|297551855|gb|EFH85720.1| protein of unknown function DUF182 [Ktedonobacter racemifer DSM
44963]
Length=320
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/248 (40%), Positives = 136/248 (55%), Gaps = 25/248 (10%)
Query 2 SISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQN-SVRK 60
++ + A QL A PFV ATVV ++PTSA+PG AI+ ADG I G++GG CAQ VR+
Sbjct 6 TLLELAHQLEQAGKPFVIATVVWCERPTSAKPGARAIIEADGHITGWIGGSCAQPVVVRE 65
Query 61 AAMGVLQAGESVLLR------VLPDGDVH-FPEAPGACVVVNPCLAGGSLEIFLTPQLPA 113
A + + GE LLR V DV FP + C +GG LEI++ P LP
Sbjct 66 AVRALREGGEPSLLRLGAPVTVGIHRDVRAFPMS---------CASGGILEIYMEPHLPQ 116
Query 114 PLIQIYGETPIADALIELCGLLGYDARRDTDPADTDALP----TAIVIASHGGPEAEIIR 169
P + + G++P+ AL +L +L + A + D +P T IV+A+HG + +++
Sbjct 117 PQLILVGDSPVVAALSQLAPVLDF-AVTHLNHTDLSQVPIDQRTLIVVATHGQYDEDVLT 175
Query 170 TALDNGVGYVGLVASTVRGASILDSLDLSDAER---ARVHTPVGLAIGAKTPAEIAVSIA 226
AL + YVG+VAS R + L +S E AR+ P GL IGA TP EIA SI
Sbjct 176 QALQSPAAYVGMVASHRRADACRSYLRMSGLEERQIARLKAPAGLDIGAMTPEEIASSIL 235
Query 227 AELIATLR 234
AEL+ R
Sbjct 236 AELVQVRR 243
>gi|339503285|ref|YP_004690705.1| XdhC /CoxI family-like protein [Roseobacter litoralis Och 149]
gi|338757278|gb|AEI93742.1| XdhC /CoxI family-like protein [Roseobacter litoralis Och 149]
Length=259
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/237 (36%), Positives = 126/237 (54%), Gaps = 24/237 (10%)
Query 17 FVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGVLQAGESVLLR 75
F AT+VR T+A+PG +A+L ADGTI EG++GG C + ++R+A + G+ +
Sbjct 18 FAIATIVRTAGTTAAKPGAKALLRADGTILEGWLGGGCVKGAIREATLRAYTTGQPQFIS 77
Query 76 VLPDGDVHFPEA--------PGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIADA 127
V P+ H E G N C + G+++IF+ P LP P + I+G++P+A
Sbjct 78 VAPE--EHLAEKGVKAGDDVDGVRFARNGCPSKGTIDIFIEPHLPEPDLLIFGQSPVAVK 135
Query 128 LIELCGLLGYDARRDTDPADTDALPT-------AIVIASHGGPEAEIIRTALDNGVGYVG 180
L+EL G+ A + A LPT +VIA+ G + ++T L YV
Sbjct 136 LMELAPQFGWTA---AEAATNAPLPTRLPGSGRYLVIATQGQGDLAALQTGLAESADYVA 192
Query 181 LVASTVRGASILDSL---DLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLR 234
V S + A++ D L ++ A+ A VH P GL IGA TPAEIA+SI A+L R
Sbjct 193 FVGSAKKFAALSDKLVATGVNAAQIADVHAPAGLNIGAVTPAEIALSILAKLTQVKR 249
>gi|126739092|ref|ZP_01754786.1| hypothetical protein RSK20926_21869 [Roseobacter sp. SK209-2-6]
gi|126719709|gb|EBA16417.1| hypothetical protein RSK20926_21869 [Roseobacter sp. SK209-2-6]
Length=259
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/256 (34%), Positives = 137/256 (54%), Gaps = 19/256 (7%)
Query 3 ISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKA 61
+++ A +L A F AT+VR T+A+PG +A+L +DGT+ +G++GG C + +V++A
Sbjct 11 MAEAAQELRAKEEAFAFATIVRTAGSTAAKPGAKALLSSDGTLLQGWLGGGCTRGAVKRA 70
Query 62 AMGVLQAGESVLLRVLPD------GDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPL 115
A+ L G L+ V P+ G E G N C + G+++IF+ P LP P
Sbjct 71 AVQALNEGRPQLVSVAPEDLLAEKGVAAGDEVDGTQFARNGCPSRGTVDIFIEPCLPIPQ 130
Query 116 IQIYGETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNG 175
+ + G +P+A AL EL + T + IV+A+ G + + +++AL+ G
Sbjct 131 LVVIGSSPVARALSELAPTFHWSVTA-TPHKNKPHKKRFIVVATQGQGDLDALKSALEVG 189
Query 176 VGYVGLVASTVRGASILDSL---DLSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIAT 232
GYV V S + AS+ L L+ + VH P GL +GA TP EIA+SI A+L+
Sbjct 190 SGYVAFVGSRRKYASLAKKLGDAGLNQSAIDGVHAPAGLELGAITPEEIALSILAQLV-- 247
Query 233 LRGGGPRGRKALADEN 248
+ R+A A++N
Sbjct 248 ------QERRATANQN 257
>gi|56697248|ref|YP_167613.1| carbon monoxide dehydrogenase F protein [Ruegeria pomeroyi DSS-3]
gi|56678985|gb|AAV95651.1| carbon monoxide dehydrogenase F protein [Ruegeria pomeroyi DSS-3]
Length=260
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/243 (36%), Positives = 132/243 (55%), Gaps = 12/243 (4%)
Query 3 ISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKA 61
++D A +L A + PF AT+VR T+A+PG +A+L ADGTI G++GG C + +V++A
Sbjct 11 LADAAQELRAQQVPFAFATIVRTAGATAAKPGAKALLSADGTIVHGWLGGGCTRGAVKRA 70
Query 62 AMGVLQAGESVLLRVLPDGDVHFPE--APGACV-----VVNPCLAGGSLEIFLTPQLPAP 114
A+ LQ+G L+ V P+ D+ + APG V N C + G+++IF+ P LP P
Sbjct 71 AVEALQSGVPQLISVAPE-DLLAEKGIAPGDTVDGTHFARNGCPSRGTVDIFIEPCLPMP 129
Query 115 LIQIYGETPIADALIELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDN 174
+ I G +P+A AL L + DA IVIA+ G + + ++ AL
Sbjct 130 ELVILGASPVAQALNTLAPQFHWAVSAALASEPVDAQQKFIVIATQGQGDLDALKAALSV 189
Query 175 GVGYVGLVASTVRGASILDSLD---LSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIA 231
YV V S + A++ + L + + V+ P GL +GA TP EIA+SI A+L+
Sbjct 190 DAAYVAFVGSGRKFAALAEKLHGAGIGPEKTNAVNAPAGLDLGAVTPEEIALSILAQLLR 249
Query 232 TLR 234
R
Sbjct 250 VRR 252
>gi|333983880|ref|YP_004513090.1| XshC-Cox1-family protein [Methylomonas methanica MC09]
gi|333807921|gb|AEG00591.1| XshC-Cox1-family protein [Methylomonas methanica MC09]
Length=273
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/248 (35%), Positives = 125/248 (51%), Gaps = 36/248 (14%)
Query 14 RTPFVRATVVRAQQPTSARPGDEAILLADG-TIEGFVGGHCAQNSVRKAAMGVLQAGESV 72
R P+V ATVV +SA+P +A++ G I G++GG CAQ+ V + A+ LQ+GE
Sbjct 17 RQPYVLATVVEILGSSSAKPAAKALIDRSGQVITGWIGGGCAQSMVSQTALKCLQSGEPS 76
Query 73 LLRV-LPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIADALIEL 131
++ + L D E GA + PC GGS+ +++ P LP P + + G I ++L E
Sbjct 77 VIDIDLTD------EIFGAGM---PC--GGSMRVYVEPFLPKPQLWLMGHGRIVESLCEF 125
Query 132 CGLLGYDARRDTDPADTDALPTA--------------------IVIASHGGPEAEIIRTA 171
LG+ + A PTA +VIA+H + + + A
Sbjct 126 AHRLGFAVIVNDPQAGVAEFPTADRVINNDSRYQQLQPQAGDYVVIATHHKGDYDALTQA 185
Query 172 LDNGVGYVGLVASTVRGASILDSLD---LSDAERARVHTPVGLAIGAKTPAEIAVSIAAE 228
L++G GY+ +VAS R +L L SD RV P GL IGAK P EIA+SI +E
Sbjct 186 LNSGAGYIAMVASRKRAQLVLKRLRQEGFSDDMLVRVRAPAGLDIGAKLPEEIALSIVSE 245
Query 229 LIATLRGG 236
+I RGG
Sbjct 246 MILLRRGG 253
>gi|114320721|ref|YP_742404.1| hypothetical protein Mlg_1567 [Alkalilimnicola ehrlichii MLHE-1]
gi|114227115|gb|ABI56914.1| protein of unknown function DUF182 [Alkalilimnicola ehrlichii
MLHE-1]
Length=297
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/248 (34%), Positives = 124/248 (50%), Gaps = 22/248 (8%)
Query 9 QLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGVLQA 68
QL AA TP TVVRA PTSA+PG++A++ A+G I G++GG CAQ +V L
Sbjct 13 QLTAAGTPCALVTVVRAVSPTSAKPGEKAVVTAEGAIHGWIGGGCAQPAVLGTVREALAD 72
Query 69 GESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIA--- 125
G + L+R+ P G P+ G C +GG+L+IF+ P LP+P++ +YG P+A
Sbjct 73 GAARLIRISP-GKGDQPQVAGITDFNMACHSGGTLDIFIDPLLPSPVVNLYGSAPVARHL 131
Query 126 -------DALIE-------LCGLLGYDARRDTDPADTDA-LPTAIVIASHGGPEAEIIRT 170
D ++ L A + P D P V+A+ G + +
Sbjct 132 AALAARMDLRVQVLAPGTTLADFPEAAAHHNAFPTPEDWPAPQWAVVATQGRGDRPALEA 191
Query 171 ALDNGVGYVGLVASTVRGASILDSLDLSDAERAR---VHTPVGLAIGAKTPAEIAVSIAA 227
AL V +AS + + D L +R + TP G+ IGA+TPAEIA+S+ A
Sbjct 192 ALQTAADPVAFIASPRKRDKLRDELRGRGVCPSRLQCIRTPAGVPIGARTPAEIALSVVA 251
Query 228 ELIATLRG 235
+L+ RG
Sbjct 252 QLVQWRRG 259
>gi|89054583|ref|YP_510034.1| hypothetical protein Jann_2092 [Jannaschia sp. CCS1]
gi|88864132|gb|ABD55009.1| protein of unknown function DUF182 [Jannaschia sp. CCS1]
Length=256
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/229 (35%), Positives = 121/229 (53%), Gaps = 14/229 (6%)
Query 16 PFVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGVLQAGESVLL 74
PF AT+VR T+A+PG +A+L ADGTI +G++GG C +V++AA+ L+ G L+
Sbjct 24 PFAFATIVRTAGSTAAKPGAKALLSADGTILQGWLGGGCTHGAVKRAALQALRDGTPQLV 83
Query 75 RVLPD------GDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIADAL 128
V P+ G E G N C + G+++IF+ P LP+P + + G +P+A+AL
Sbjct 84 SVAPEELLAEKGVSAGDEVDGMRFARNGCPSRGTVDIFIEPCLPSPQLVVIGASPVAEAL 143
Query 129 IELCGLLGYDARRDTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVGLVASTVRG 188
L + P P +VIA+ G + E ++ AL + V S +
Sbjct 144 NALAPQFHWSVTGTLPPNK----PCCVVIATQGQGDLEALKAALSAQTNSIAFVGSRRKY 199
Query 189 ASILDSLDLSDAERA---RVHTPVGLAIGAKTPAEIAVSIAAELIATLR 234
AS+ D L +++ RV P GL +GA TP EIA+SI A+L+ R
Sbjct 200 ASLADKLAAVGIDQSAIDRVQAPAGLDLGAVTPEEIALSILAQLVQDRR 248
>gi|339628483|ref|YP_004720126.1| protein of unknown function DUF182 [Sulfobacillus acidophilus
TPY]
gi|339286272|gb|AEJ40383.1| protein of unknown function DUF182 [Sulfobacillus acidophilus
TPY]
Length=316
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/252 (33%), Positives = 129/252 (52%), Gaps = 17/252 (6%)
Query 2 SISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKA 61
++ AA+L A+ P+V TVVR PTSA G A++ D I G+VGG C + + +
Sbjct 3 AVLQEAARLDLAQEPYVMVTVVRTVPPTSATVGARALVSVDRKITGYVGGECTRRILLEV 62
Query 62 AMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNP--CLAGGSLEIFLTPQLPAPLIQIY 119
L G +L + PD + +A G ++V P C +GG++E+F+ P+L P++ +
Sbjct 63 VEEALADGRPRILLLTPDSEGSVRDA-GQGILVKPMTCHSGGTVELFVEPRLADPVLLVV 121
Query 120 GETPIADALIELCGLLGYDARRD--TDPADTDALPTAI----------VIASHGGPEAEI 167
G++P+A +L EL L + RR ++ D ++L I V+A+ G +
Sbjct 122 GDSPVAQSLAELAAQLPFTVRRASMSEADDWESLKNQIEQHAVAGSYVVVATMGQYDDWA 181
Query 168 IRTALDNGVGYVGLVASTVRGASILDSLD--LSDAERARVHTPVGLAIGAKTPAEIAVSI 225
I D + Y+G+VAS RG + + E V P GL +G++ P EIAVSI
Sbjct 182 IDVLRDVPIQYLGVVASPRRGELLRQRFEQGQRQDEACVVSVPAGLDLGSRHPGEIAVSI 241
Query 226 AAELIATLRGGG 237
AE+I R G
Sbjct 242 LAEIIQIRRQHG 253
>gi|332667200|ref|YP_004449988.1| YHS domain-containing protein [Haliscomenobacter hydrossis DSM
1100]
gi|332336014|gb|AEE53115.1| YHS domain-containing protein [Haliscomenobacter hydrossis DSM
1100]
Length=337
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/254 (30%), Positives = 123/254 (49%), Gaps = 24/254 (9%)
Query 3 ISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAA 62
I + A+ L+ PF TVVR + P+S + GD+AI+ G ++G+VGG C + V K
Sbjct 5 IYEMASDLILQGEPFATVTVVRNEAPSSGKTGDKAIVNKTGVLKGWVGGGCVYSIVLKEV 64
Query 63 MGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGET 122
L G+ L+RV P + G C +GG +++++ P +P P + I G++
Sbjct 65 TEALDDGKPRLVRVSPTPSNE--PSRGVKEYKMTCYSGGEVDLYIEPVMPKPHLVIIGKS 122
Query 123 PIADALIELCGLLGYDARRDTDPADTDALP-------------------TAIVIASHGGP 163
I AL++ + + + ++ + P T IV+A+ G
Sbjct 123 IIGRALMKAAKAIDFRLTVINEESNQEVFPEADHHQTAFNLEGISFNKHTFIVVATQGDN 182
Query 164 EAEIIRTALDNGVGYVGLVASTVRGASI---LDSLDLSDAERARVHTPVGLAIGAKTPAE 220
+ ++TAL YVG +AS + + L +L LS A+ VH P G+ I KTP E
Sbjct 183 DERGLQTALGVKCRYVGFIASRKKRDGVFANLLNLGLSQAQLDEVHAPAGIDINGKTPQE 242
Query 221 IAVSIAAELIATLR 234
+A+SI AE+I R
Sbjct 243 VAISILAEIIQEYR 256
>gi|313902891|ref|ZP_07836287.1| YHS domain-containing protein [Thermaerobacter subterraneus DSM
13965]
gi|313466826|gb|EFR62344.1| YHS domain-containing protein [Thermaerobacter subterraneus DSM
13965]
Length=412
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/258 (33%), Positives = 134/258 (52%), Gaps = 40/258 (15%)
Query 17 FVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGVLQAGESVLLRV 76
F ATV+R + P S+R GD+A++ ADG IEG++GG C+++ VR+ A+ L G+ L+++
Sbjct 26 FALATVIRRRPPVSSRAGDKALITADGRIEGWIGGSCSESIVRRQALAALADGQPRLIQI 85
Query 77 LPD--GDVHFPE------APGAC---------VVVNPCLAGGSLEIFLTPQLPAPLIQIY 119
D D E PGA V C +GG +++++ P + P +
Sbjct 86 RVDVPADAATAEESDEGQEPGAAGGEGDARVVTVAMTCPSGGEVDVYIEPFVRPPQLIAC 145
Query 120 GETPIADALIELCGLLGYD----ARRDTDP---------------ADTDALPTAI-VIAS 159
G+TP+A AL+++ ++G++ R+ P D + +P A V+A+
Sbjct 146 GDTPLAYALVQMAAMVGFEPVLVYGREAPPEAAVPGGRAISVDALEDFEPVPEAYAVVAT 205
Query 160 HGGPEAEIIRTALDNGVGYVGLVASTVRGASILDSL---DLSDAERARVHTPVGLAIGAK 216
G + E ++ L GV YV LVAS R A++ + L + A+ RV P GL +GA
Sbjct 206 MGHFDEECLQRWLAAGVPYVALVASRKRAAAVKEVLAGAGVPAADLERVRNPAGLDLGAV 265
Query 217 TPAEIAVSIAAELIATLR 234
T EIAVSI A++I R
Sbjct 266 TQEEIAVSILADIIRQRR 283
>gi|254453150|ref|ZP_05066587.1| carbon monoxide dehydrogenase F protein [Octadecabacter antarcticus
238]
gi|198267556|gb|EDY91826.1| carbon monoxide dehydrogenase F protein [Octadecabacter antarcticus
238]
Length=259
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/232 (36%), Positives = 122/232 (53%), Gaps = 14/232 (6%)
Query 17 FVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGVLQAGESVLLR 75
F AT+VR TSA+PG +A+L DGTI EG++GG C +++++ A + G+ +
Sbjct 18 FAVATIVRTAGTTSAKPGAKALLREDGTILEGWLGGGCVRSAIKDATLRAYATGQPQFIS 77
Query 76 VLPDGDVHFP------EAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIADALI 129
V P+ ++ G N C + G+++IF+ P LP P + I+GE+P+A+ L
Sbjct 78 VAPEENLMEKGVRAGDAVDGVRFARNGCPSKGTIDIFIEPYLPTPDLLIFGESPVAEKLK 137
Query 130 ELCGLLGYD-ARRDTDPADTDALPT---AIVIASHGGPEAEIIRTALDNGVGYVGLVAST 185
EL G+ A D LP +VIA+ G + ++T L + V YV V ST
Sbjct 138 ELAPQFGWAVATASADAPLAPRLPVRGRYLVIATQGQGDLAALKTGLADAVDYVAFVGST 197
Query 186 VRGASILDSLDLSDAE---RARVHTPVGLAIGAKTPAEIAVSIAAELIATLR 234
+ AS+ L + + A V P GL IGA TPAEIA+SI AEL R
Sbjct 198 KKFASLSKKLVAAGTDPAAIAAVCAPAGLNIGAVTPAEIALSILAELTQVKR 249
>gi|315427097|dbj|BAJ48713.1| carbon monoxide dehydrogenase F protein [Candidatus Caldiarchaeum
subterraneum]
gi|315427128|dbj|BAJ48743.1| carbon monoxide dehydrogenase F protein [Candidatus Caldiarchaeum
subterraneum]
gi|343485762|dbj|BAJ51416.1| carbon monoxide dehydrogenase F protein [Candidatus Caldiarchaeum
subterraneum]
Length=283
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/259 (31%), Positives = 131/259 (51%), Gaps = 33/259 (12%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGT-IEGFVGGHCAQNSVR 59
++ + A+L+A F ATVV+ TS + G +AI+L DG + G+VGG C + +V
Sbjct 4 LTFYSKVAELIAENKKFCIATVVKTIGHTSGKVGSKAIILEDGKGLFGWVGGGCVETTVL 63
Query 60 KAAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIY 119
A+ ++ G S + + + E G V PC GGS+E++L P LP + +
Sbjct 64 HEALKTIKEGRSRTIYLEME-----DELRGTGV---PC--GGSMEVYLEPVLPKKQLLLV 113
Query 120 GETPIADALIELCGLLGYDAR------RDTDPADTDAL-------------PTAIVIASH 160
G I ++L ++ +L Y DP+ D TA+V+++
Sbjct 114 GHGGIVESLAKIGKMLDYKVVVADPEGMFKDPSMVDQYVVDPDLKGVTIDGNTAVVVSTM 173
Query 161 GGPEAEIIRTALDNGVGYVGLVASTVRGASILDSL---DLSDAERARVHTPVGLAIGAKT 217
+ + ++ ALD G Y+GLVAS R + ++L + + R+ +P G+ IGA+
Sbjct 174 HKLDHKYLKIALDGGARYIGLVASKKRAGIVFETLLRLGVPEESIRRISSPAGIDIGAEK 233
Query 218 PAEIAVSIAAELIATLRGG 236
P EIA+SI AE+I++ +GG
Sbjct 234 PEEIALSIFAEIISSEKGG 252
>gi|317122325|ref|YP_004102328.1| YHS domain-containing protein [Thermaerobacter marianensis DSM
12885]
gi|315592305|gb|ADU51601.1| YHS domain-containing protein [Thermaerobacter marianensis DSM
12885]
Length=384
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/272 (33%), Positives = 135/272 (50%), Gaps = 46/272 (16%)
Query 6 RAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGV 65
RAA+L A F ATV+R + P S+R GD+A++ ADG +EG++GG C+++ VR+ A+
Sbjct 15 RAAELRAQGRSFALATVIRRRPPVSSRAGDKALVTADGHLEGWIGGSCSESVVREQALAA 74
Query 66 LQAGESVLLRV---LPDGDV----HFPEAPGA------CVVVNPCLAGGSLEIFLTPQLP 112
L G L+++ P GD H V C +GG +++++ P +
Sbjct 75 LADGRPRLVQIRLEAPAGDATGHDHGAATDAGAGDARVVTVAMTCPSGGEVDVYIEPFVR 134
Query 113 APLIQIYGETPIADALIELCGLLGY------------------------DARRDTDPADT 148
P + G+TP+A L +L ++G+ DA D DPA
Sbjct 135 PPQLIACGDTPLAVTLAQLAAMVGFEPVLVYGREAPAEATLPGGRAIPVDALADFDPA-- 192
Query 149 DALPTAI-VIASHGGPEAEIIRTALDNGVGYVGLVASTVRGASILDSL---DLSDAERAR 204
P A V+AS G + E ++ L GV YV LVAS R A++ + L + A+ R
Sbjct 193 ---PEAYAVVASMGHFDEECLQRWLAAGVPYVALVASRRRAAAVKEVLAAAGVPAADLER 249
Query 205 VHTPVGLAIGAKTPAEIAVSIAAELIATLRGG 236
+ P GL +G+ T EIAV+I A++I R G
Sbjct 250 IRNPAGLDLGSVTQEEIAVAILADIIRQRRTG 281
>gi|14601927|ref|NP_148472.1| CoxF-like protein [Aeropyrum pernix K1]
gi|5105927|dbj|BAA81239.1| CoxF homolog [Aeropyrum pernix K1]
Length=298
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/262 (31%), Positives = 124/262 (48%), Gaps = 33/262 (12%)
Query 5 DRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMG 64
D L+ FV ATVV + +AR G + ++L DGT+ G++GG C++N++ A+
Sbjct 17 DMVRGLMEEEREFVIATVVSVKGSAAARVGSKGVILPDGTVRGWLGGWCSENALLTVALS 76
Query 65 VLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPI 124
L+ G L++++ G+ + V PC GG + ++L P P P I I+G +
Sbjct 77 ALKEGRPKLVKLVMSGETLKQVSEDVIEVGTPC--GGEVLVYLEPAYPKPHIPIFGNNEV 134
Query 125 ADALIELCGLLGYDARRDTDPADTDALPTAIVIAS----------HGGP----------E 164
AL L LLG+ A + P A V+AS H P +
Sbjct 135 TKALSRLAQLLGFKVTVIDPSAGPEDYPGAKVLASLEDGGVRLDRHTYPVLATMGRTDVD 194
Query 165 AEIIRTALDNGVGYVGLVASTVRGASILDSL-------DLSDAERARVHTPVGLAIGAKT 217
E++ LD V V LVAS R +L L DL + ++ +P G+ +GA T
Sbjct 195 VEVLLRILDKPVARVFLVASVNRAEEVLRRLARKGVPPDLLE----KIESPAGIDLGAAT 250
Query 218 PAEIAVSIAAELIATLRGGGPR 239
P E+A+S+ A ++A RGG R
Sbjct 251 PEELALSVLAGIVAARRGGSGR 272
>gi|344943822|ref|ZP_08783108.1| XshC-Cox1-family protein [Methylobacter tundripaludum SV96]
gi|344259480|gb|EGW19753.1| XshC-Cox1-family protein [Methylobacter tundripaludum SV96]
Length=270
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/258 (32%), Positives = 128/258 (50%), Gaps = 34/258 (13%)
Query 3 ISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAIL-LADGTIEGFVGGHCAQNSVRKA 61
I D +L AR P+ ATVV +SA+P +A++ L+ I G+VGG CAQ+ V A
Sbjct 5 ILDLQFELRKARRPYALATVVEILGSSSAKPAAKALIDLSGKVIAGWVGGGCAQSMVSNA 64
Query 62 AMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGE 121
A+ L+ GE ++ + + ++ GA + PC GGS+ +++ P LP PL+ + G
Sbjct 65 ALECLETGEPRVIEIDLNDEIF-----GAGM---PC--GGSMRVYVEPVLPKPLLWLMGH 114
Query 122 TPIADALIELCGLLGYDARRDTDPADTDALPTA--------------------IVIASHG 161
I ++L E LG++ + A + P A +VIA+H
Sbjct 115 GRIVESLCEFACRLGFEVVVNDPQATAERFPAAHRIISDDCRYQQLQPQPGDFVVIATHH 174
Query 162 GPEAEIIRTALDNGVGYVGLVASTVRGASILDSL---DLSDAERARVHTPVGLAIGAKTP 218
+ + + AL + Y+ LV+S R +L L ++ A+V P L +GAK P
Sbjct 175 KGDYDSLTYALQSEALYIALVSSRKRANLVLARLAQEGFPESGLAKVRAPASLDLGAKLP 234
Query 219 AEIAVSIAAELIATLRGG 236
EIA+SI +E++ RGG
Sbjct 235 EEIALSIVSEMVLVRRGG 252
>gi|345304607|ref|YP_004826509.1| XshC-Cox1-family protein [Rhodothermus marinus SG0.5JP17-172]
gi|345113840|gb|AEN74672.1| XshC-Cox1-family protein [Rhodothermus marinus SG0.5JP17-172]
Length=343
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/271 (35%), Positives = 135/271 (50%), Gaps = 37/271 (13%)
Query 3 ISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAA 62
I +RA + P A VVR + P S +PGD+A++L DGT+ G+VGG C + V + A
Sbjct 5 ILERAREQTERGEPCALAIVVRYEAPISGKPGDKALILPDGTLHGWVGGGCTRPVVIREA 64
Query 63 MGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGET 122
+ ++ G L+R+ P+ E G C +GG+L++++ P LP P + + G +
Sbjct 65 LRAMRDGRPRLVRITPEAA----EVEGIVAYSMTCYSGGTLDVYIEPLLPPPQLLVLGRS 120
Query 123 PIADALIELCGLLGYDARRDTDPADT---------------DALP----TAIVIASHGGP 163
+A AL+ L LGY A T D LP T V+A+ G
Sbjct 121 AVAQALVRLGRALGYRVLVADPEASTALFPEADFLVPSFALDNLPLTPWTFAVVATQGEG 180
Query 164 EAEIIRTALDNGVGYVGLVASTVRGASILDSLDLSDAER-------ARVHTPVGLAIGAK 216
+ E + AL + YV LVAS + A +L+ L AER A V P GL +GA+
Sbjct 181 DEEALEAALAHPFPYVALVASRRKAARLLEVL----AERGVPADRLATVRAPAGLNLGAR 236
Query 217 TPAEIAVSIAAELIATLRGGGPRGRKALADE 247
TP EIA+SI AE++ R P ALADE
Sbjct 237 TPEEIALSILAEIVQE-RHRNP--VPALADE 264
>gi|229582556|ref|YP_002840955.1| protein of unknown function DUF182 [Sulfolobus islandicus Y.N.15.51]
gi|228013272|gb|ACP49033.1| protein of unknown function DUF182 [Sulfolobus islandicus Y.N.15.51]
Length=289
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/241 (26%), Positives = 119/241 (50%), Gaps = 26/241 (10%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
+ +R +L+ F +V+ + P++ + G++ ++ +DG+ EG++GG C ++ + K
Sbjct 13 LEFVNRVKELIENEESFAIVEIVKTEGPSALKAGNKLVIRSDGSFEGWIGGFCTKDEIIK 72
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
++ ++ G L + L H GGS+ +++ P LP + + G
Sbjct 73 HSLEAIEEG---LTKFLYLKTCH----------------GGSIYLYIEPILPKRKLIVIG 113
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALP----TAIVIASHGGPEAEIIRTALDNGV 176
PI + + +G++ + ++P + + + T ++IA+ G + E L + V
Sbjct 114 NNPITYYIKRIGENIGFNVMKVSEPKEIEKIKINKNTFVIIATMGERDHEFAEAMLPSDV 173
Query 177 GYVGLVASTVRGASILDSLD---LSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATL 233
Y+G+VAS RG IL L SD +++ P G+ I A +P EIA+SI AE+I
Sbjct 174 RYIGIVASKKRGDDILSYLRNKGYSDDLISKIKVPAGININAVSPEEIALSIIAEIIKVS 233
Query 234 R 234
R
Sbjct 234 R 234
>gi|86139402|ref|ZP_01057971.1| carbon monoxide dehydrogenase F protein [Roseobacter sp. MED193]
gi|85823905|gb|EAQ44111.1| carbon monoxide dehydrogenase F protein [Roseobacter sp. MED193]
Length=277
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/246 (35%), Positives = 126/246 (52%), Gaps = 23/246 (9%)
Query 8 AQLVAAR-TPFVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGV 65
AQ + AR PF ATVVR T+A+PG +A+L +GTI +G++GG C ++++ KA
Sbjct 15 AQEMRARGEPFAIATVVRTLGATAAKPGAKALLDGEGTILQGWIGGGCVRSALVKAVKRA 74
Query 66 LQAGESVLLRVLPD------GDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIY 119
LQ G L+ + P G G N C + GS++IF+ LP P + IY
Sbjct 75 LQDGTPQLVSLHPQDLLDEKGLTAGDSVDGVRFARNGCPSKGSMDIFVELILPLPELVIY 134
Query 120 GETPIADALIELCGLLGYDARRDTDPADTDALPTA--------IVIASHGGPEAEIIRTA 171
G+ P+A +L L + D +A P A IV+AS G + ++ A
Sbjct 135 GDAPVAQSLARLAEQFQWA----VTIGDPEASPLALSQGETRMIVVASQGKGDLACLKQA 190
Query 172 LDNGVGYVGLVASTVRGASILDSL---DLSDAERARVHTPVGLAIGAKTPAEIAVSIAAE 228
L+ +V V S + A++ ++L ++ A+ R+ P GLAIGA TP EIA+SI A+
Sbjct 191 LETSAAFVAFVGSHRKFAALSETLIGRGVARADLDRIQAPAGLAIGAVTPDEIALSILAQ 250
Query 229 LIATLR 234
L R
Sbjct 251 LTQVRR 256
>gi|119714498|ref|YP_921463.1| hypothetical protein Noca_0231 [Nocardioides sp. JS614]
gi|119535159|gb|ABL79776.1| protein of unknown function DUF182 [Nocardioides sp. JS614]
Length=299
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/232 (36%), Positives = 121/232 (53%), Gaps = 18/232 (7%)
Query 17 FVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGVLQAGESVLLRV 76
+ ATVV Q P+S + G A + ADG + G++GG CA+ +V + A V++ GE LL +
Sbjct 15 YAVATVVWRQAPSSGQIGSRAYVTADGHVHGWIGGACAEPTVIREAQRVIRDGEPKLLYL 74
Query 77 LPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIADALIELCGLLG 136
D+ PE G + C + G+L+I++ P P + + G +P+A L L LG
Sbjct 75 GASEDLVLPE--GMTAIPMSCQSEGALQIYIEPVHPPVHLVVVGRSPMAQTLAALARALG 132
Query 137 YDARR----DTDPADTDALPTAIVIASHGGPEAEIIRTALDNGVGYVGLVASTVRGASIL 192
+ D AD D + +V+A+ G + +++R A YVGLVAS RG ++L
Sbjct 133 WRTDLVDGPDFTGADIDQR-SVVVVATQGHGDEDVVRHAASAMPAYVGLVASRKRGDAVL 191
Query 193 DSLDLSDAERA-------RVHTPVGLAIGAKTPAEIAVSIAAELIATLRGGG 237
L AER RV TPVG+ +G + EIAVSI AEL+ GG
Sbjct 192 GYL----AERGVPQHLLERVRTPVGIDLGRTSHQEIAVSILAELVQVRAAGG 239
>gi|229578655|ref|YP_002837053.1| protein of unknown function DUF182 [Sulfolobus islandicus Y.G.57.14]
gi|228009369|gb|ACP45131.1| protein of unknown function DUF182 [Sulfolobus islandicus Y.G.57.14]
Length=289
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/241 (26%), Positives = 118/241 (49%), Gaps = 26/241 (10%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
+ +R +L+ F +V+ + P++ + G++ ++ +DG+ EG++GG C ++ + K
Sbjct 13 LEFVNRVKELIENEESFAIVEIVKTEGPSALKAGNKLVIRSDGSFEGWIGGFCTKDEIIK 72
Query 61 AAMGVLQAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYG 120
++ ++ G L + L H GGS+ +++ P LP + + G
Sbjct 73 HSLEAIEEG---LTKFLYLKTCH----------------GGSIYLYIEPILPKRKLIVIG 113
Query 121 ETPIADALIELCGLLGYDARRDTDPADTDALP----TAIVIASHGGPEAEIIRTALDNGV 176
PI + + +G++ ++P + + + T ++IA+ G + E L + V
Sbjct 114 NNPITYYIKRIGENIGFNVMEVSEPKEIEKIKINKNTFVIIATMGERDHEFAEAMLPSDV 173
Query 177 GYVGLVASTVRGASILDSLD---LSDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATL 233
Y+G+VAS RG IL L SD +++ P G+ I A +P EIA+SI AE+I
Sbjct 174 RYIGIVASKKRGDDILSYLRNKGYSDDLISKIKVPAGININAVSPEEIALSIIAEIIKVS 233
Query 234 R 234
R
Sbjct 234 R 234
>gi|291295760|ref|YP_003507158.1| hypothetical protein Mrub_1376 [Meiothermus ruber DSM 1279]
gi|290470719|gb|ADD28138.1| protein of unknown function DUF182 [Meiothermus ruber DSM 1279]
Length=354
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/269 (30%), Positives = 128/269 (48%), Gaps = 30/269 (11%)
Query 1 MSISDRAAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRK 60
M I R A+L + F ATVV Q P S+ GD+AI+ DG EG+VGG C++ VRK
Sbjct 1 MDIYSRIAELRQSGQSFALATVVSRQAPVSSHLGDKAIIFEDGCFEGYVGGACSREIVRK 60
Query 61 AAMGVLQAGESVLLRVLPDGDVHFP-EAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIY 119
A+ L+ G+ L+R+ P+ E V+ C + G++++++ P + + +
Sbjct 61 QALEALRLGKPRLVRITPEAAAKVVLEHADEVVIPMTCASEGAVDVYIEPLIGKSCLLVV 120
Query 120 GETPIADALIELCGLLGY-----------------------DARRDTDPAD-TDALPTAI 155
G + IA ++ + Y D R + D + T I
Sbjct 121 GGSQIALTTAQIAARMNYTVTLACDKPELAGVSLESEIQVLDWRELGNWLDAQNPAKTHI 180
Query 156 VIAS--HGGPEAEIIRTALDNGVGYVGLVASTVRGASILDSLDLSDAERA---RVHTPVG 210
VIAS H +A ++ Y+GLVAS RGA++LD+L++ R ++ P G
Sbjct 181 VIASQGHYDEDALVLIAQRMPRPAYLGLVASRKRGAAVLDNLEILGVPRTTFPQLKYPAG 240
Query 211 LAIGAKTPAEIAVSIAAELIATLRGGGPR 239
L +G + E+AVSI AE+I+ P+
Sbjct 241 LDLGGRGRDEVAVSILAEIISLKHQKNPQ 269
>gi|254441367|ref|ZP_05054860.1| xanthine dehydrogenase accessory factor, putative subfamily,
putative [Octadecabacter antarcticus 307]
gi|198251445|gb|EDY75760.1| xanthine dehydrogenase accessory factor, putative subfamily,
putative [Octadecabacter antarcticus 307]
Length=274
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/254 (34%), Positives = 119/254 (47%), Gaps = 37/254 (14%)
Query 10 LVAARTPFVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGVLQA 68
L A PF ATVVR TSA+PG +A+L DG I G+VGG CA+ +V KAA +Q
Sbjct 18 LKAKGVPFAMATVVRTVDATSAKPGSKALLDQDGKILMGWVGGGCARGAVGKAACDAIQT 77
Query 69 GESVLLRVLPD----------GDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQI 118
GE + + P GDV G N C + G++++F+ P LP P + +
Sbjct 78 GEPQFISLRPQELLETEGLIAGDVR----DGVRFRRNGCPSKGTMDVFVEPVLPLPEMVV 133
Query 119 YGETPIADALIELCGLLGY--------------DARRDTDPADTDALPTAIVIASHGGPE 164
G +A AL +L Y D R D A D IV+A+ G +
Sbjct 134 CGTGLVAMALADLASRFDYKVTVHAAENVETDADVTRGFDFASQD----FIVVATQGQGD 189
Query 165 AEIIRTALDNGVGYVGLVASTVRGASILDSLDLSDAE----RARVHTPVGLAIGAKTPAE 220
++ A+ + G+V V S + A+I L + + A+V P GL I A TP E
Sbjct 190 KNALQAAVSSNCGHVSFVGSVRKFATIAAKLIAENPDLQPMLAKVCAPAGLNINAITPDE 249
Query 221 IAVSIAAELIATLR 234
IA+SI AE+ R
Sbjct 250 IALSILAEITQFRR 263
>gi|296159229|ref|ZP_06842055.1| YHS domain protein [Burkholderia sp. Ch1-1]
gi|295890488|gb|EFG70280.1| YHS domain protein [Burkholderia sp. Ch1-1]
Length=353
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/256 (32%), Positives = 127/256 (50%), Gaps = 42/256 (16%)
Query 9 QLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGVLQA 68
+L+ PF TV+RA PTSA G +A++ DG + G++GG C+++ V AA+ ++A
Sbjct 12 RLIEEAQPFAVVTVIRAAPPTSAWVGAQALVEGDGALHGWIGGGCSRSIVVAAALQTIRA 71
Query 69 GESVLLRV-----LPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETP 123
G+ +R+ P+ DV PC + G+LE+F+ P LPAP++ I G TP
Sbjct 72 GQPKRVRISNEPGRPEADVE--------AHAMPCASNGTLELFIQPTLPAPMVLILGSTP 123
Query 124 IADALIELCGL--------------------LGYD-ARRDTDPADTDAL-PTAIVIASHG 161
A +E C L LG R+ D A D + P I++A+ G
Sbjct 124 TA---LEACVLAQRVGLRVGAAASVTAPLAALGLPWVRQGFDAAAFDQIEPQLILVATQG 180
Query 162 GPEAEIIRTALDNGVGYVGLVASTVRGASILDSLD---LSDAERARVHTPVGLAIGAKTP 218
+ + + AL + V LVAS + + D++ ++ A +H+P G I A+TP
Sbjct 181 DNDEDALEAALRSTAAAVLLVASERKADRLRDAMRRRGITPERLAALHSPAGPHIHARTP 240
Query 219 AEIAVSIAAELIATLR 234
EIA+ A L+ TLR
Sbjct 241 QEIALGAVAGLV-TLR 255
>gi|329903337|ref|ZP_08273430.1| Carbon monoxide dehydrogenase F protein [Oxalobacteraceae bacterium
IMCC9480]
gi|327548415|gb|EGF33093.1| Carbon monoxide dehydrogenase F protein [Oxalobacteraceae bacterium
IMCC9480]
Length=312
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/236 (33%), Positives = 123/236 (53%), Gaps = 11/236 (4%)
Query 7 AAQLVAARTPFVRATVVRAQQPTSARPGDEAILLADGTIEGFVGGHCAQNSVRKAAMGVL 66
A QL+AA+ PF ATV+R P+S G +AI+ ADGT+ G+VGG CA+ V +AA +
Sbjct 14 APQLIAAQRPFALATVIRVSAPSSTVVGAQAIIEADGTLHGWVGGGCAKEVVVQAAQQAI 73
Query 67 QAGESVLLRVLPDGDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIAD 126
G +R+ DG + + + PC + G+LE+F+ P +PAPL+ + G TP A
Sbjct 74 GVGLPRRIRISNDGALSEADVEQHAM---PCASNGTLELFIQPVVPAPLLVVLGATPAAA 130
Query 127 ALIELCGLLGYD----ARRDTDPADTDAL-PTAIVIASHGGPEAEIIRTALDNGVGYVGL 181
L +G A +D A + L P ++I + G + + AL + V L
Sbjct 131 EARVLGQRMGLRVSALADSQSDLAMLELLQPAFVLIVTQGEGDEAALDAALRSSCPAVLL 190
Query 182 VASTVRGASILDSLDL---SDAERARVHTPVGLAIGAKTPAEIAVSIAAELIATLR 234
+AS + A + + + L ++ A + P G + A+TPAE+A+ A ++A R
Sbjct 191 IASPRKAAQLRERMQLQGIAEDRLAVLQAPAGPYLHARTPAEVALGAIAAVVALRR 246
>gi|159043764|ref|YP_001532558.1| hypothetical protein Dshi_1215 [Dinoroseobacter shibae DFL 12]
gi|157911524|gb|ABV92957.1| protein of unknown function DUF182 [Dinoroseobacter shibae DFL
12]
Length=270
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/248 (34%), Positives = 120/248 (49%), Gaps = 32/248 (12%)
Query 17 FVRATVVRAQQPTSARPGDEAILLADGTI-EGFVGGHCAQNSVRKAAMGVLQAGESVLLR 75
F ATVVR + TSA+PG +A++ A+G I G+VGG C + +V +AA + G + L
Sbjct 18 FAVATVVRTLEATSAKPGAKALISAEGEILAGWVGGGCIRAAVGRAAREAVADGATRFLS 77
Query 76 VLPD------GDVHFPEAPGACVVVNPCLAGGSLEIFLTPQLPAPLIQIYGETPIADALI 129
+ P+ G E G N C + GS+++F+ P LP P++QI G P+A AL
Sbjct 78 LRPEEVLEAEGVAPGEERAGIRFARNGCPSKGSMDVFIEPVLPRPVLQICGGGPVAQALA 137
Query 130 ELCGLLGYDAR-----------------RDTDPADTDALPTA---IVIASHGGPEAEIIR 169
L G+D R +D D A +V+A+ G + +R
Sbjct 138 RLGA--GFDFDLALAAPGLAAADAPAGVRLSDSYAFDTCADAARFLVVATQGKGDEAALR 195
Query 170 TALDNGVGYVGLVASTVRGASILDSL---DLSDAERARVHTPVGLAIGAKTPAEIAVSIA 226
AL G YV V S + A++ L + RV P GL I A TP EIA+SI
Sbjct 196 AALSAGGAYVAFVGSRRKFATLRSRLAADGVPPEALDRVKAPAGLDIKAITPEEIALSIL 255
Query 227 AELIATLR 234
AE++AT R
Sbjct 256 AEIVATRR 263
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 362093846100
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40