BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0374c Length=159 Score E Sequences producing significant alignments: (Bits) Value gi|15607515|ref|NP_214888.1| carbon monoxyde dehydrogenase small... 329 1e-88 gi|340625404|ref|YP_004743856.1| putative carbon monoxyde dehydr... 328 2e-88 gi|339630444|ref|YP_004722086.1| carbon monoxyde dehydrogenase s... 326 9e-88 gi|240172156|ref|ZP_04750815.1| putative carbon monoxide dehydro... 306 6e-82 gi|296167825|ref|ZP_06850010.1| aerobic-type carbon monoxide deh... 305 1e-81 gi|183980681|ref|YP_001848972.1| carbon monoxyde dehydrogenase (... 301 2e-80 gi|118616016|ref|YP_904348.1| carbon monoxyde dehydrogenase (sma... 293 6e-78 gi|126433091|ref|YP_001068782.1| 2Fe-2S iron-sulfur cluster bind... 274 3e-72 gi|118469009|ref|YP_885151.1| 2Fe-2S-binding domain-containing p... 273 8e-72 gi|111022198|ref|YP_705170.1| carbon monoxide dehydrogenase [Rho... 272 1e-71 gi|108797470|ref|YP_637667.1| (2Fe-2S)-binding protein [Mycobact... 271 2e-71 gi|226364688|ref|YP_002782470.1| carbon monoxide dehydrogenase s... 271 3e-71 gi|312140400|ref|YP_004007736.1| carbon monoxide dehydrogenase s... 268 2e-70 gi|281191484|gb|ADA57153.1| carbon monoxide dehydrogenase small ... 264 3e-69 gi|119714490|ref|YP_921455.1| 2Fe-2S iron-sulfur cluster binding... 239 1e-61 gi|116670587|ref|YP_831520.1| 2Fe-2S iron-sulfur cluster binding... 236 1e-60 gi|302866403|ref|YP_003835040.1| (2Fe-2S)-binding domain-contain... 232 1e-59 gi|284044480|ref|YP_003394820.1| (2Fe-2S)-binding domain protein... 230 4e-59 gi|331696474|ref|YP_004332713.1| carbon-monoxide dehydrogenase [... 217 4e-55 gi|258655384|ref|YP_003204540.1| (2Fe-2S)-binding domain-contain... 213 6e-54 gi|331696470|ref|YP_004332709.1| carbon-monoxide dehydrogenase [... 209 1e-52 gi|119714496|ref|YP_921461.1| 2Fe-2S iron-sulfur cluster binding... 207 3e-52 gi|269928692|ref|YP_003321013.1| (2Fe-2S)-binding domain-contain... 207 4e-52 gi|148654517|ref|YP_001274722.1| 2Fe-2S iron-sulfur cluster bind... 204 2e-51 gi|148253278|ref|YP_001237863.1| carbon monoxide dehydrogenase s... 202 1e-50 gi|146342850|ref|YP_001207898.1| carbon-monoxide dehydrogenase s... 202 1e-50 gi|156740849|ref|YP_001430978.1| 2Fe-2S iron-sulfur cluster bind... 201 4e-50 gi|221635971|ref|YP_002523847.1| [2Fe-2S] binding domain protein... 200 7e-50 gi|262195230|ref|YP_003266439.1| (2Fe-2S)-binding domain protein... 199 8e-50 gi|47176993|ref|YP_015604.1| CO-dehydrogenase small chain [Oligo... 199 1e-49 gi|221633189|ref|YP_002522414.1| [2Fe-2S] binding domain-contain... 199 1e-49 gi|328544632|ref|YP_004304741.1| carbon-monoxide dehydrogenase s... 198 2e-49 gi|219847893|ref|YP_002462326.1| (2Fe-2S)-binding domain-contain... 197 5e-49 gi|269837427|ref|YP_003319655.1| (2Fe-2S)-binding domain-contain... 197 5e-49 gi|163746612|ref|ZP_02153970.1| (2Fe-2S)-binding protein [Oceani... 195 2e-48 gi|118589855|ref|ZP_01547259.1| (2Fe-2S)-binding protein [Stappi... 194 2e-48 gi|313902355|ref|ZP_07835759.1| (2Fe-2S)-binding domain-containi... 194 3e-48 gi|268318304|ref|YP_003292023.1| (2Fe-2S)-binding domain-contain... 194 5e-48 gi|149913807|ref|ZP_01902339.1| carbon monoxide dehydrogenase, s... 194 5e-48 gi|154253402|ref|YP_001414226.1| 2Fe-2S iron-sulfur cluster-bind... 194 5e-48 gi|99081607|ref|YP_613761.1| (2Fe-2S)-binding [Ruegeria sp. TM10... 193 7e-48 gi|345304602|ref|YP_004826504.1| carbon-monoxide dehydrogenase (... 193 7e-48 gi|295697195|ref|YP_003590433.1| (2Fe-2S)-binding domain-contain... 193 8e-48 gi|291295911|ref|YP_003507309.1| (2Fe-2S)-binding domain-contain... 193 9e-48 gi|313902888|ref|ZP_07836284.1| (2Fe-2S)-binding domain-containi... 193 9e-48 gi|331695313|ref|YP_004331552.1| carbon-monoxide dehydrogenase [... 192 1e-47 gi|255264126|ref|ZP_05343468.1| (2Fe-2S) binding domain protein ... 192 1e-47 gi|163848998|ref|YP_001637042.1| 2Fe-2S iron-sulfur cluster bind... 192 1e-47 gi|332664774|ref|YP_004447562.1| carbon-monoxide dehydrogenase (... 192 1e-47 gi|297567079|ref|YP_003686051.1| (2Fe-2S)-binding domain-contain... 192 1e-47 >gi|15607515|ref|NP_214888.1| carbon monoxyde dehydrogenase small subunit [Mycobacterium tuberculosis H37Rv] gi|15839760|ref|NP_334797.1| carbon monoxide dehydrogenase, small subunit, putative [Mycobacterium tuberculosis CDC1551] gi|31791551|ref|NP_854044.1| carbon monoxyde dehydrogenase small subunit [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=159 Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 159/159 (100%), Positives = 159/159 (100%), Gaps = 0/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT Sbjct 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP Sbjct 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS Sbjct 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 >gi|340625404|ref|YP_004743856.1| putative carbon monoxyde dehydrogenase (small chain) [Mycobacterium canettii CIPT 140010059] gi|340003594|emb|CCC42715.1| putative carbon monoxyde dehydrogenase (small chain) [Mycobacterium canettii CIPT 140010059] Length=159 Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 158/159 (99%), Positives = 159/159 (100%), Gaps = 0/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGEPVTA+VEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT Sbjct 1 MQVNMTVNGEPVTADVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP Sbjct 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS Sbjct 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 >gi|339630444|ref|YP_004722086.1| carbon monoxyde dehydrogenase small subunit [Mycobacterium africanum GM041182] gi|339329800|emb|CCC25448.1| putative carbon monoxyde dehydrogenase (small chain) [Mycobacterium africanum GM041182] Length=159 Score = 326 bits (835), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 158/159 (99%), Positives = 158/159 (99%), Gaps = 0/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT Sbjct 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMAS HSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP Sbjct 61 MLAVMASWHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS Sbjct 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 >gi|240172156|ref|ZP_04750815.1| putative carbon monoxide dehydrogenase small chain [Mycobacterium kansasii ATCC 12478] Length=159 Score = 306 bits (784), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 146/159 (92%), Positives = 152/159 (96%), Gaps = 0/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGE VTAEVEPRMLLVHFLRDQL LTGTHWGCDTSNCGTCVV+VDGVPVKSCT Sbjct 1 MQVNMTVNGEQVTAEVEPRMLLVHFLRDQLGLTGTHWGCDTSNCGTCVVDVDGVPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMASGH++RTVEGLAG DG LDPVQEGFMRCHGLQCGFCTPGM+ITARALLDRNPDP Sbjct 61 MLAVMASGHNVRTVEGLAGADGSLDPVQEGFMRCHGLQCGFCTPGMMITARALLDRNPDP 120 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 DEQTIREAISGQICRCTGYTTIVRSIQWAA + T KA+S Sbjct 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAKNSTAKAES 159 >gi|296167825|ref|ZP_06850010.1| aerobic-type carbon monoxide dehydrogenase small subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897023|gb|EFG76644.1| aerobic-type carbon monoxide dehydrogenase small subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=160 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 144/159 (91%), Positives = 152/159 (96%), Gaps = 0/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGE V+A+VEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT Sbjct 1 MQVNMTVNGEQVSADVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMASGHS+RTVEGLAGPDG LDP+QEGFMRCHGLQCGFCTPGM+ITARALLDR+PDP Sbjct 61 MLAVMASGHSVRTVEGLAGPDGALDPIQEGFMRCHGLQCGFCTPGMMITARALLDRDPDP 120 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 DEQTIREAISGQICRCTGYTTIVRSIQWAA H + + S Sbjct 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAQHSSSEVAS 159 >gi|183980681|ref|YP_001848972.1| carbon monoxyde dehydrogenase (small chain), CoxS [Mycobacterium marinum M] gi|183174007|gb|ACC39117.1| carbon monoxyde dehydrogenase (small chain), CoxS [Mycobacterium marinum M] Length=160 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 144/159 (91%), Positives = 149/159 (94%), Gaps = 0/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGEPV+AEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVV+VDGVPVKSCT Sbjct 2 MQVNMTVNGEPVSAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVDVDGVPVKSCT 61 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMASG SIRTVEGLA DG LDPVQEGFMRCHGLQCGFCTPGM+ITARALLDRNPDP Sbjct 62 MLAVMASGRSIRTVEGLAAADGSLDPVQEGFMRCHGLQCGFCTPGMMITARALLDRNPDP 121 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 DE+TIREAISGQICRCTGYTTIVRSIQWAA + A S Sbjct 122 DEETIREAISGQICRCTGYTTIVRSIQWAAKNAKEVASS 160 >gi|118616016|ref|YP_904348.1| carbon monoxyde dehydrogenase (small chain), CoxS [Mycobacterium ulcerans Agy99] gi|118568126|gb|ABL02877.1| carbon monoxyde dehydrogenase (small chain), CoxS [Mycobacterium ulcerans Agy99] Length=159 Score = 293 bits (750), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 142/159 (90%), Positives = 147/159 (93%), Gaps = 0/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGEPV+AEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVV+VDGVPVKSCT Sbjct 1 MQVNMTVNGEPVSAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVDVDGVPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 M AVMASG SIRTVEGLA DG LDPVQEGFMRCHGLQCGFCTPGM+ITARALLDRN DP Sbjct 61 MPAVMASGRSIRTVEGLAVADGSLDPVQEGFMRCHGLQCGFCTPGMMITARALLDRNLDP 120 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 DE+TIREAISGQICRCTGYTTIVRSIQWAA + A S Sbjct 121 DEETIREAISGQICRCTGYTTIVRSIQWAAKNAKEVASS 159 >gi|126433091|ref|YP_001068782.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Mycobacterium sp. JLS] gi|126232891|gb|ABN96291.1| (2Fe-2S)-binding domain protein [Mycobacterium sp. JLS] Length=191 Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/152 (86%), Positives = 140/152 (93%), Gaps = 1/152 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV+MTVNGEPV+A+VEPRMLLVHFLRD+LRLTGTHWGCDTSNCGTCVV +DG PVKSCT Sbjct 1 MQVSMTVNGEPVSADVEPRMLLVHFLRDELRLTGTHWGCDTSNCGTCVVSLDGEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMA GH +RTVEGL DG+LDPVQEGFM+CHGLQCGFCTPGM+ITARALLDRNP P Sbjct 61 MLAVMADGHDVRTVEGLE-VDGKLDPVQEGFMQCHGLQCGFCTPGMMITARALLDRNPHP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAH 152 E IREAISGQICRCTGYTTIVRS+QWAA H Sbjct 120 TEHEIREAISGQICRCTGYTTIVRSVQWAAGH 151 >gi|118469009|ref|YP_885151.1| 2Fe-2S-binding domain-containing protein [Mycobacterium smegmatis str. MC2 155] gi|118170296|gb|ABK71192.1| [2Fe-2S] binding domain protein [Mycobacterium smegmatis str. MC2 155] Length=158 Score = 273 bits (697), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 131/159 (83%), Positives = 143/159 (90%), Gaps = 1/159 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV MTVNGE VTA+VEPRMLLVHFLRDQL LTGTHWGCDTSNCGTCVVEVDG PVKSCT Sbjct 1 MQVTMTVNGEAVTADVEPRMLLVHFLRDQLGLTGTHWGCDTSNCGTCVVEVDGEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLA MASGHS+ TVEG+ DG+LDPVQEGFM+CHGLQCGFCTPGM+ITARALL +NPDP Sbjct 61 MLAAMASGHSVNTVEGME-VDGKLDPVQEGFMQCHGLQCGFCTPGMMITARALLRQNPDP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS 159 E+ IREAISGQICRCTGYTTIVRS+QWAA H +A++ Sbjct 120 TEEEIREAISGQICRCTGYTTIVRSVQWAARHAREEAKA 158 >gi|111022198|ref|YP_705170.1| carbon monoxide dehydrogenase [Rhodococcus jostii RHA1] gi|110821728|gb|ABG97012.1| possible carbon monoxide dehydrogenase [Rhodococcus jostii RHA1] Length=194 Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 131/157 (84%), Positives = 140/157 (90%), Gaps = 1/157 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGE V+AEVEPRMLLVHFLRDQL LTGTHWGCDTSNCGTCVV VDG PVKSCT Sbjct 1 MQVNMTVNGEAVSAEVEPRMLLVHFLRDQLGLTGTHWGCDTSNCGTCVVTVDGDPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLA MA GH +RTVEGL DG+LDPVQ+GFM+CHGLQCGFCTPGM++TARALLDR P Sbjct 61 MLAAMAGGHDVRTVEGLE-HDGELDPVQQGFMQCHGLQCGFCTPGMMMTARALLDREESP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKA 157 DE TIREAISGQICRCTGYTTIVRSIQWAA H+ +A Sbjct 120 DEATIREAISGQICRCTGYTTIVRSIQWAADHRAGEA 156 >gi|108797470|ref|YP_637667.1| (2Fe-2S)-binding protein [Mycobacterium sp. MCS] gi|119866555|ref|YP_936507.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Mycobacterium sp. KMS] gi|108767889|gb|ABG06611.1| (2Fe-2S)-binding protein [Mycobacterium sp. MCS] gi|119692644|gb|ABL89717.1| (2Fe-2S)-binding domain protein [Mycobacterium sp. KMS] Length=191 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 129/152 (85%), Positives = 139/152 (92%), Gaps = 1/152 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV+MTVNGE V+A+VEPRMLLVHFLRD+LRLTGTHWGCDTSNCGTCVV +DG PVKSCT Sbjct 1 MQVSMTVNGEQVSADVEPRMLLVHFLRDELRLTGTHWGCDTSNCGTCVVSLDGEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMA GH +RTVEGL DG+LDPVQEGFM+CHGLQCGFCTPGM+ITARALLDRNP P Sbjct 61 MLAVMADGHDVRTVEGLE-VDGKLDPVQEGFMQCHGLQCGFCTPGMMITARALLDRNPHP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAH 152 E IREAISGQICRCTGYTTIVRS+QWAA H Sbjct 120 TEHEIREAISGQICRCTGYTTIVRSVQWAAGH 151 >gi|226364688|ref|YP_002782470.1| carbon monoxide dehydrogenase small subunit [Rhodococcus opacus B4] gi|226243177|dbj|BAH53525.1| carbon monoxide dehydrogenase small subunit [Rhodococcus opacus B4] Length=192 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/157 (85%), Positives = 140/157 (90%), Gaps = 1/157 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQVNMTVNGE VTAEVEPRMLLVHFLRDQL LTGTHWGCDTSNCGTCVV VDG PVKSCT Sbjct 1 MQVNMTVNGEAVTAEVEPRMLLVHFLRDQLGLTGTHWGCDTSNCGTCVVTVDGDPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLA MA GH +RTVEGL DG+LDPVQ+GFM+CHGLQCGFCTPGM++TARALLDR P Sbjct 61 MLAAMAGGHDVRTVEGLE-RDGELDPVQQGFMQCHGLQCGFCTPGMMMTARALLDRVDSP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKA 157 DE TIREAISGQICRCTGYTTIVRSIQWAA H+ +A Sbjct 120 DEATIREAISGQICRCTGYTTIVRSIQWAADHRAGEA 156 >gi|312140400|ref|YP_004007736.1| carbon monoxide dehydrogenase small subunit [Rhodococcus equi 103S] gi|325675990|ref|ZP_08155673.1| carbon monoxide dehydrogenase [Rhodococcus equi ATCC 33707] gi|311889739|emb|CBH49056.1| putative carbon monoxide dehydrogenase small subunit [Rhodococcus equi 103S] gi|325553228|gb|EGD22907.1| carbon monoxide dehydrogenase [Rhodococcus equi ATCC 33707] Length=165 Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/152 (85%), Positives = 138/152 (91%), Gaps = 1/152 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV MTVNG V +VEPRMLLVHFLRD+L LTGTHWGCDTSNCGTCVV VDG PVKSCT Sbjct 1 MQVTMTVNGAEVADDVEPRMLLVHFLRDRLGLTGTHWGCDTSNCGTCVVAVDGEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMA G ++RTVEGLA DG LDPVQEGFM+CHGLQCGFCTPGM+ITARALLDR+PDP Sbjct 61 MLAVMADGRAVRTVEGLA-TDGVLDPVQEGFMQCHGLQCGFCTPGMMITARALLDRDPDP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAH 152 DEQTIREAISGQICRCTGYTTIVRS++WAA H Sbjct 120 DEQTIREAISGQICRCTGYTTIVRSVRWAAEH 151 >gi|281191484|gb|ADA57153.1| carbon monoxide dehydrogenase small subunit [Mycobacterium sp. DSM 3803] gi|281191494|gb|ADA57163.1| carbon monoxide dehydrogenase small subunit [Mycobacterium sp. DSM 3803] Length=161 Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/153 (82%), Positives = 135/153 (89%), Gaps = 1/153 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV MT+NGE VTAEVEPR LLVHFLRDQL +TGTHWGCDTSNCGTCVV +DG PVKSCT Sbjct 1 MQVTMTINGESVTAEVEPRTLLVHFLRDQLGMTGTHWGCDTSNCGTCVVALDGEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLAVMA GH + TVEGL DG+LDPVQEGFM+CHGLQCGFCTPGM+ITARALL+ NPDP Sbjct 61 MLAVMAGGHEVTTVEGLE-KDGKLDPVQEGFMQCHGLQCGFCTPGMMITARALLNSNPDP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQ 153 E IREAISGQICRCTGYTTIVRS+QWAA + Sbjct 120 SEDEIREAISGQICRCTGYTTIVRSVQWAAKSE 152 >gi|119714490|ref|YP_921455.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Nocardioides sp. JS614] gi|119535151|gb|ABL79768.1| (2Fe-2S)-binding domain protein [Nocardioides sp. JS614] Length=158 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/152 (74%), Positives = 129/152 (85%), Gaps = 1/152 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 M+V +TVNGE VT +VE R+LLVHFLRD L LTGTHWGCDTSNCG+CVV D PVKSCT Sbjct 1 MEVTLTVNGEVVTRDVEARLLLVHFLRDDLGLTGTHWGCDTSNCGSCVVLYDDEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 +L MA+GH +RTVE L DG+LDPVQ+GFM CHGLQCGFCT GML++ARALLDR+PDP Sbjct 61 VLTAMAAGHDVRTVEDLE-QDGELDPVQQGFMECHGLQCGFCTSGMLMSARALLDRDPDP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAH 152 E+ IREAISGQICRCTGY +IVRS++WAA H Sbjct 120 SEEDIREAISGQICRCTGYASIVRSVRWAADH 151 >gi|116670587|ref|YP_831520.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Arthrobacter sp. FB24] gi|116610696|gb|ABK03420.1| (2Fe-2S)-binding domain protein [Arthrobacter sp. FB24] Length=183 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 109/148 (74%), Positives = 129/148 (88%), Gaps = 1/148 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQ++MTVNG V +++EPR+LLVH++R+ L LTGTHWGCDT+NCGTCVV +DG PVKSCT Sbjct 1 MQISMTVNGNEVASDIEPRVLLVHYIREVLGLTGTHWGCDTTNCGTCVVLMDGQPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 +LA MA+GH IRTVEGLA G LDPVQ+GFM HGLQCGFCTPGM++TARALLD+NP P Sbjct 61 VLAAMAAGHDIRTVEGLATA-GTLDPVQQGFMEEHGLQCGFCTPGMMLTARALLDKNPYP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQW 148 D+ IR+AISGQICRCTGY TIVRS+QW Sbjct 120 DDTEIRKAISGQICRCTGYATIVRSVQW 147 >gi|302866403|ref|YP_003835040.1| (2Fe-2S)-binding domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315502814|ref|YP_004081701.1| (2fe-2S)-binding domain-containing protein [Micromonospora sp. L5] gi|302569262|gb|ADL45464.1| (2Fe-2S)-binding domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315409433|gb|ADU07550.1| (2Fe-2S)-binding domain-containing protein [Micromonospora sp. L5] Length=182 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/148 (76%), Positives = 126/148 (86%), Gaps = 1/148 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV MTVN VT E+E R+LLVHFLRD L LTGTH GCDTSNCGTCVV +DG PVKSCT Sbjct 1 MQVTMTVNDVEVTREIEGRLLLVHFLRDVLGLTGTHAGCDTSNCGTCVVWLDGEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 +LA MA GH +RTVEGLA +LDPVQ+GF++CHGLQCGFCTPGM++TARALL+RNPDP Sbjct 61 VLAAMAGGHQVRTVEGLA-KGAELDPVQQGFIQCHGLQCGFCTPGMMMTARALLNRNPDP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQW 148 E IREAISGQICRCTGY TIVRS++W Sbjct 120 TEAEIREAISGQICRCTGYATIVRSVRW 147 >gi|284044480|ref|YP_003394820.1| (2Fe-2S)-binding domain protein [Conexibacter woesei DSM 14684] gi|283948701|gb|ADB51445.1| (2Fe-2S)-binding domain protein [Conexibacter woesei DSM 14684] Length=165 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 116/160 (73%), Positives = 129/160 (81%), Gaps = 4/160 (2%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV ++VNGE E+EPR+LLVH LRD+L LTGTHWGCDTSNCGTCVV VDG PVKSCT Sbjct 1 MQVTVSVNGEEHVREIEPRLLLVHLLRDELGLTGTHWGCDTSNCGTCVVLVDGEPVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 MLA A+GH I TVEGL DGQLDPVQ+GF HGLQCGFCTPGM++TARALLDR Sbjct 61 MLAATAAGHEITTVEGLE-RDGQLDPVQQGFHEQHGLQCGFCTPGMMLTARALLDRRAGG 119 Query 121 D---EQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKA 157 D +Q IREAISGQICRCTGY+TIVRSI+WAA H +A Sbjct 120 DPITDQEIREAISGQICRCTGYSTIVRSIRWAAEHPAGQA 159 >gi|331696474|ref|YP_004332713.1| carbon-monoxide dehydrogenase [Pseudonocardia dioxanivorans CB1190] gi|326951163|gb|AEA24860.1| Carbon-monoxide dehydrogenase (acceptor) [Pseudonocardia dioxanivorans CB1190] Length=155 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 107/146 (74%), Positives = 119/146 (82%), Gaps = 1/146 (0%) Query 5 MTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTMLAV 64 MTVNG +VEPR+LLVH LRD+LRLTGTHWGCDTSNCG C V +DG+PVKSCT+LAV Sbjct 1 MTVNGVEHVRDVEPRLLLVHLLRDELRLTGTHWGCDTSNCGACTVWMDGLPVKSCTVLAV 60 Query 65 MASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQT 124 MA G S+RTVE L GP G LD VQ+ FM CHGLQCGFCTPGML+TAR LLD NPDP + Sbjct 61 MADGRSVRTVEDLEGPFG-LDQVQQSFMDCHGLQCGFCTPGMLMTARKLLDDNPDPTDTE 119 Query 125 IREAISGQICRCTGYTTIVRSIQWAA 150 IREAISGQICRCTGY IV +I+ AA Sbjct 120 IREAISGQICRCTGYRNIVAAIRHAA 145 >gi|258655384|ref|YP_003204540.1| (2Fe-2S)-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258558609|gb|ACV81551.1| (2Fe-2S)-binding domain protein [Nakamurella multipartita DSM 44233] Length=181 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 107/153 (70%), Positives = 120/153 (79%), Gaps = 3/153 (1%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQV +TVNG E+E R LLVH+LR L LTGTHWGCDTS CGTCV +D PVK+CT Sbjct 1 MQVRITVNGVEHVNEIESRQLLVHYLRTTLGLTGTHWGCDTSQCGTCVAWLDEEPVKTCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQ-LDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPD 119 +LA MA GH +RTVEGLA DG LDPVQ GFM HGLQCGFCTPGM++TAR LLD +PD Sbjct 61 VLAAMADGHRVRTVEGLA--DGATLDPVQVGFMAEHGLQCGFCTPGMMMTARHLLDHDPD 118 Query 120 PDEQTIREAISGQICRCTGYTTIVRSIQWAAAH 152 PDE TIREAISGQICRCTGY IVR+++ AA H Sbjct 119 PDEATIREAISGQICRCTGYENIVRAVRHAAGH 151 >gi|331696470|ref|YP_004332709.1| carbon-monoxide dehydrogenase [Pseudonocardia dioxanivorans CB1190] gi|326951159|gb|AEA24856.1| Carbon-monoxide dehydrogenase (acceptor) [Pseudonocardia dioxanivorans CB1190] Length=171 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 98/152 (65%), Positives = 116/152 (77%), Gaps = 1/152 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 ++ +TVNGE AEVEPR+LL H LR L LTGTH GCDT+NCG C V DG PVKSCTM Sbjct 19 RITVTVNGERRVAEVEPRLLLAHLLRQGLALTGTHVGCDTTNCGACTVLYDGAPVKSCTM 78 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 LAV A GH + TVEGL P +LDPVQEGF+ HGLQCGFCTPGM++ ARALL+RNPDP Sbjct 79 LAVQADGHEVTTVEGLGTPS-ELDPVQEGFVAEHGLQCGFCTPGMMLAARALLNRNPDPS 137 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAAHQ 153 E IR +SG +CRCTGY IV++++WAA + Sbjct 138 EDEIRWGLSGNLCRCTGYQNIVKAVRWAAEKE 169 >gi|119714496|ref|YP_921461.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Nocardioides sp. JS614] gi|119535157|gb|ABL79774.1| carbon monoxide dehydrogenase, small subunit [Nocardioides sp. JS614] Length=181 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 96/149 (65%), Positives = 115/149 (78%), Gaps = 1/149 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 ++ + VNG P TA+VEPR+LL H LR +LTGTH GCDT+NCG C V VDG+PVKSCTM Sbjct 20 RITVRVNGTPRTADVEPRLLLAHLLRQGFKLTGTHTGCDTTNCGACTVLVDGLPVKSCTM 79 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 LAV A GH + TVEGLAGP +L P+QEGF HGLQCGFCTPGM++ A+ALL NPDP Sbjct 80 LAVQADGHEVTTVEGLAGPS-ELHPLQEGFKDEHGLQCGFCTPGMMLAAKALLAENPDPT 138 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAA 150 E +R A+SG +CRCTGY IV+S+ WAA Sbjct 139 EDEVRFALSGNLCRCTGYQNIVKSVLWAA 167 >gi|269928692|ref|YP_003321013.1| (2Fe-2S)-binding domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269788049|gb|ACZ40191.1| (2Fe-2S)-binding domain protein [Sphaerobacter thermophilus DSM 20745] Length=178 Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 98/148 (67%), Positives = 120/148 (82%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 + +TVNGE AEVEPR+LLVHF+R+ L LTGTH GCDT++CG C + ++GVPVKSCT+ Sbjct 10 ITVTVNGEVRQAEVEPRLLLVHFIRETLGLTGTHIGCDTTSCGACTIHLNGVPVKSCTVF 69 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV A G IRTVEGL +G+L PVQEGF + HGLQCGFCTPGM++TA ALL+RNP+P E Sbjct 70 AVQADGGEIRTVEGLE-QNGELHPVQEGFWQEHGLQCGFCTPGMMMTAVALLERNPNPTE 128 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 IR+AISG +CRCTGY IV+SIQ+AA Sbjct 129 AEIRQAISGNLCRCTGYVNIVKSIQYAA 156 >gi|148654517|ref|YP_001274722.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Roseiflexus sp. RS-1] gi|148566627|gb|ABQ88772.1| (2Fe-2S)-binding domain protein [Roseiflexus sp. RS-1] Length=163 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 94/149 (64%), Positives = 117/149 (79%), Gaps = 1/149 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 + +TVNG+ T+EVEPR LLVH+LR+ L LTGTH GCDTS CG CVV VDGV VKSCTML Sbjct 7 ITVTVNGKSYTSEVEPRTLLVHYLREHLNLTGTHIGCDTSQCGACVVLVDGVSVKSCTML 66 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV A G ++ T+EGLA +GQL P+QEGF CHGLQCG+CTPGM++ A LL RNP+P + Sbjct 67 AVQADGANVLTIEGLA-QNGQLHPLQEGFWECHGLQCGYCTPGMIMAAYDLLQRNPEPTD 125 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAAA 151 + +R + G +CRCTGY IVR++Q+AAA Sbjct 126 EEVRHGLEGNLCRCTGYHNIVRAVQYAAA 154 >gi|148253278|ref|YP_001237863.1| carbon monoxide dehydrogenase small subunit [Bradyrhizobium sp. BTAi1] gi|146405451|gb|ABQ33957.1| carbon monoxide dehydrogenase, small subunit [Bradyrhizobium sp. BTAi1] Length=166 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/150 (62%), Positives = 110/150 (74%), Gaps = 0/150 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 + M VNG V EPR LLVHFLR+Q +LTGTH GC+TS+CG C +++DG+ VKSCTM Sbjct 5 HITMKVNGSEVEGLAEPRTLLVHFLREQAQLTGTHIGCETSHCGACTIDIDGMSVKSCTM 64 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 LAV A+G I T+EG+A DG L P+QEGF HGLQCGFCTPGM+I A LL NP P Sbjct 65 LAVQANGAEITTIEGMANADGTLSPLQEGFRMMHGLQCGFCTPGMIIRAHRLLKENPSPT 124 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAA 151 E IR ISG ICRCTGY IV++IQ+AAA Sbjct 125 EAEIRAGISGNICRCTGYQNIVKAIQYAAA 154 >gi|146342850|ref|YP_001207898.1| carbon-monoxide dehydrogenase small subunit [Bradyrhizobium sp. ORS 278] gi|146195656|emb|CAL79683.1| carbon-monoxide dehydrogenase small subunit [Bradyrhizobium sp. ORS 278] Length=166 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/150 (63%), Positives = 110/150 (74%), Gaps = 0/150 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 V M VNG V EPR LLVHFLR+Q +LTGTH GC+TS+CG C V++DG+ VKSCTM Sbjct 5 HVTMKVNGSEVEGLAEPRTLLVHFLREQAQLTGTHIGCETSHCGACTVDIDGMSVKSCTM 64 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 LAV A+G I T+EG+A DG L P+QEGF HGLQCGFCTPGM++ A LL NP P Sbjct 65 LAVQANGAEITTIEGMANADGTLSPLQEGFRMMHGLQCGFCTPGMILRAHRLLKENPSPT 124 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAA 151 E IR ISG ICRCTGY IV++IQ+AAA Sbjct 125 EAEIRAGISGNICRCTGYQNIVKAIQYAAA 154 >gi|156740849|ref|YP_001430978.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232177|gb|ABU56960.1| (2Fe-2S)-binding domain protein [Roseiflexus castenholzii DSM 13941] Length=160 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 92/149 (62%), Positives = 116/149 (78%), Gaps = 1/149 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 + +TVNG+ T +VEPR LLVH+LR+ L LTGTH GCDTS CG CVV VDGV VKSCTML Sbjct 4 ITVTVNGKSYTNDVEPRTLLVHYLREHLNLTGTHIGCDTSQCGACVVLVDGVSVKSCTML 63 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV A G ++ T+EGLA +GQL P+QEGF CHGLQCG+CTPGM++ A LL +NP+P + Sbjct 64 AVQADGANVLTIEGLA-QNGQLHPLQEGFWECHGLQCGYCTPGMIMAAYDLLQQNPNPTD 122 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAAA 151 + +R + G +CRCTGY IVR++Q+AAA Sbjct 123 EEVRHGLEGNLCRCTGYHNIVRAVQYAAA 151 >gi|221635971|ref|YP_002523847.1| [2Fe-2S] binding domain protein [Thermomicrobium roseum DSM 5159] gi|221157388|gb|ACM06506.1| [2Fe-2S] binding domain protein [Thermomicrobium roseum DSM 5159] Length=166 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 98/148 (67%), Positives = 114/148 (78%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 + +TVNG TAEVEPR+LLVHF+RD L LTGTH GCDT++CG C V +G PVKSCT+ Sbjct 6 ITVTVNGRTYTAEVEPRLLLVHFIRDVLNLTGTHIGCDTTSCGACTVIWNGRPVKSCTVF 65 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV A G I TVEGL DGQL PVQEGF HGLQCG+CTPGM++TA ALL NPDP E Sbjct 66 AVQADGTEILTVEGLE-RDGQLHPVQEGFWEEHGLQCGYCTPGMMMTAVALLAENPDPTE 124 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 + IR AISG +CRCTGY IV++IQ+AA Sbjct 125 EEIRAAISGNLCRCTGYVNIVKAIQYAA 152 >gi|262195230|ref|YP_003266439.1| (2Fe-2S)-binding domain protein [Haliangium ochraceum DSM 14365] gi|262078577|gb|ACY14546.1| (2Fe-2S)-binding domain protein [Haliangium ochraceum DSM 14365] Length=166 Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 96/153 (63%), Positives = 115/153 (76%), Gaps = 1/153 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQ+ + VN E +A+VEPRMLLVHFLR++L LTGTH GCDT+NCG C V VDG P+KSCT Sbjct 1 MQITVHVNSEEHSADVEPRMLLVHFLRERLGLTGTHIGCDTTNCGACTVLVDGAPIKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 LAV A+G + TVEGLA LD +QEGF HGLQCGFCTPGM++ A+AL+ NP P Sbjct 61 YLAVQANGRQVSTVEGLA-RGATLDLIQEGFREQHGLQCGFCTPGMMLVAKALIADNPTP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAAHQ 153 E+ IR AISG +CRCTGY IV ++QWAA Q Sbjct 120 SEEDIRWAISGNLCRCTGYQNIVAAVQWAAERQ 152 >gi|47176993|ref|YP_015604.1| CO-dehydrogenase small chain [Oligotropha carboxidovorans OM5] gi|337739152|ref|YP_004638432.1| CO-dehydrogenase small chain CoxS [Oligotropha carboxidovorans OM5] gi|22002034|sp|P19921.2|DCMS_OLICO RecName: Full=Carbon monoxide dehydrogenase small chain; Short=CO dehydrogenase subunit S; Short=CO-DH S 15 more sequence titles Length=166 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 89/150 (60%), Positives = 111/150 (74%), Gaps = 0/150 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 + +T+NG PV A VEPR LL+HF+R+Q LTG H GCDTS+CG C V++DG+ VKSCTM Sbjct 5 HIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTM 64 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 AV A+G SI T+EG+A PDG L +QEGF HGLQCG+CTPGM++ + LL NP P Sbjct 65 FAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPT 124 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAA 151 E IR I G +CRCTGY IV++IQ+AAA Sbjct 125 EAEIRFGIGGNLCRCTGYQNIVKAIQYAAA 154 >gi|221633189|ref|YP_002522414.1| [2Fe-2S] binding domain-containing protein [Thermomicrobium roseum DSM 5159] gi|221156092|gb|ACM05219.1| [2Fe-2S] binding domain protein [Thermomicrobium roseum DSM 5159] Length=156 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 96/150 (64%), Positives = 113/150 (76%), Gaps = 1/150 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 MQ+ +TVNG T +VEPR+LLVH+LRD L LTGTH GCDTS CG C V ++G VKSCT Sbjct 1 MQITVTVNGVTYTHDVEPRLLLVHYLRDVLNLTGTHIGCDTSQCGACTVLMNGKAVKSCT 60 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 + AV A G I T+EGLA DGQL PVQEGF HGLQCG+CTPGM++TA L RNP+P Sbjct 61 IFAVQADGAEITTIEGLA-RDGQLHPVQEGFWEKHGLQCGYCTPGMIMTAVDFLQRNPNP 119 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAA 150 E+ IR AI G +CRCTGY IVR+IQ+AA Sbjct 120 TEEEIRHAIEGNLCRCTGYQNIVRAIQYAA 149 >gi|328544632|ref|YP_004304741.1| carbon-monoxide dehydrogenase small subunit [Polymorphum gilvum SL003B-26A1] gi|326414374|gb|ADZ71437.1| Carbon-monoxide dehydrogenase small subunit [Polymorphum gilvum SL003B-26A1] Length=169 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 90/151 (60%), Positives = 112/151 (75%), Gaps = 0/151 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 M V +TVNG+ V VEPR LL+HFLR+ L +TG H GC+T++CG C VE++G+ VKSCT Sbjct 7 MPVTLTVNGKKVQRFVEPRTLLIHFLREDLSITGPHIGCETTHCGACTVELNGMSVKSCT 66 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 M AV A G I T+EG+A PDG L +QEGF + HGLQCGFCTPGM++ A LL NPDP Sbjct 67 MFAVQADGAEITTIEGMANPDGTLSALQEGFRQMHGLQCGFCTPGMIMRAHVLLKENPDP 126 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAAA 151 E IR I+G +CRCTGY IV++IQ+AAA Sbjct 127 SEDEIRAGIAGNLCRCTGYQNIVKAIQYAAA 157 >gi|219847893|ref|YP_002462326.1| (2Fe-2S)-binding domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542152|gb|ACL23890.1| (2Fe-2S)-binding domain protein [Chloroflexus aggregans DSM 9485] Length=160 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 93/148 (63%), Positives = 112/148 (76%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 + +TVNG T++VEPR+LLVH+LR+ L LTGTH GCDTS CG CVV V+GV VKSCTML Sbjct 4 ITVTVNGVRYTSDVEPRLLLVHYLREHLNLTGTHIGCDTSQCGACVVHVNGVSVKSCTML 63 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV G I T+EGLA DGQL P+QEGF HGLQCGFCTPGM++ A LL RNP+P E Sbjct 64 AVQCDGAEITTIEGLA-SDGQLHPLQEGFWEKHGLQCGFCTPGMIMAAADLLKRNPNPTE 122 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 IR + G +CRCTGY IVR++++AA Sbjct 123 DEIRHGLEGNLCRCTGYENIVRAVRYAA 150 >gi|269837427|ref|YP_003319655.1| (2Fe-2S)-binding domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786690|gb|ACZ38833.1| (2Fe-2S)-binding domain protein [Sphaerobacter thermophilus DSM 20745] Length=164 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 95/149 (64%), Positives = 113/149 (76%), Gaps = 1/149 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 Q+ +TVNG T+EVEPR+LLVH+LRD L LTGTH GCDTS CG C V ++ VKSCT+ Sbjct 4 QITVTVNGVQHTSEVEPRLLLVHYLRDVLNLTGTHVGCDTSQCGACTVIMNESAVKSCTV 63 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 LAV A G I T+EGLA DGQL P+QEGF HGLQCGFCTPGM++TA LL +NP+P Sbjct 64 LAVQADGAEITTIEGLA-KDGQLHPLQEGFWEMHGLQCGFCTPGMIMTAYDLLQKNPNPT 122 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAA 150 E+ IR + G +CRCTGY IVRSIQ+AA Sbjct 123 EEEIRHGLEGNLCRCTGYQNIVRSIQYAA 151 >gi|163746612|ref|ZP_02153970.1| (2Fe-2S)-binding protein [Oceanibulbus indolifex HEL-45] gi|161380497|gb|EDQ04908.1| (2Fe-2S)-binding protein [Oceanibulbus indolifex HEL-45] Length=161 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 93/156 (60%), Positives = 111/156 (72%), Gaps = 1/156 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 QV MTVNG+P + EVE R LLVHFLRD L LTGTH GCDTS CG CVV V+G VK+CTM Sbjct 3 QVKMTVNGKPASGEVEGRTLLVHFLRDDLELTGTHVGCDTSQCGACVVHVNGNAVKACTM 62 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 A+ A G + T+EG A PDG L+ +Q+ F HGLQCGFCTPGM+++A ALL NP P Sbjct 63 FAIEADGAEVDTIEGQAAPDGTLNTIQQAFQDHHGLQCGFCTPGMVMSAAALLKDNPKPS 122 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKA 157 E +R + G ICRCTGY IV++I AA+ Q V A Sbjct 123 EAEVRHYLDGNICRCTGYHNIVKAI-MAASGQDVSA 157 >gi|118589855|ref|ZP_01547259.1| (2Fe-2S)-binding protein [Stappia aggregata IAM 12614] gi|118437352|gb|EAV43989.1| (2Fe-2S)-binding protein [Stappia aggregata IAM 12614] Length=169 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 89/149 (60%), Positives = 110/149 (74%), Gaps = 0/149 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 V MTVNG+ V VE R LL+HFLR+ L LTG H GC+TS+CG C VE++G+ VKSCTM Sbjct 9 VTMTVNGKKVQRFVEARTLLIHFLREDLNLTGPHIGCETSHCGACTVELNGMSVKSCTMF 68 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV A G + T+EG+A DG L +QEGF + HGLQCGFCTPGM++ A LL NP+P E Sbjct 69 AVQADGAELTTIEGMANADGTLSALQEGFRQMHGLQCGFCTPGMILRAHTLLKENPNPTE 128 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAAA 151 + IR ISG +CRCTGY IV++IQ+AAA Sbjct 129 EEIRMGISGNLCRCTGYQNIVKAIQYAAA 157 >gi|313902355|ref|ZP_07835759.1| (2Fe-2S)-binding domain-containing protein [Thermaerobacter subterraneus DSM 13965] gi|313467403|gb|EFR62913.1| (2Fe-2S)-binding domain-containing protein [Thermaerobacter subterraneus DSM 13965] Length=173 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 93/148 (63%), Positives = 113/148 (77%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 V +TVNG T EVEPR LLVHFLR++L LTGTH GCDTSNCG C V ++G VKSCT+L Sbjct 15 VTVTVNGRTYTREVEPRTLLVHFLREELGLTGTHVGCDTSNCGACTVHLNGQAVKSCTVL 74 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV A G + T+EGLA DG+L PVQEGF HGLQCGFCTPGM++ A LL+ NP+P E Sbjct 75 AVQADGAEVVTIEGLA-RDGRLHPVQEGFWEQHGLQCGFCTPGMIMAAAHLLEVNPNPTE 133 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 + IR+ + G +CRCTGY IVR++Q+AA Sbjct 134 EEIRQGLEGVLCRCTGYQNIVRAVQYAA 161 >gi|268318304|ref|YP_003292023.1| (2Fe-2S)-binding domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335838|gb|ACY49635.1| (2Fe-2S)-binding domain protein [Rhodothermus marinus DSM 4252] Length=165 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 91/148 (62%), Positives = 115/148 (78%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 V +TVNGE TAEVEPR+LLVHFLR+ L LTGTH GCDT++CG C V ++G VKSCT+L Sbjct 8 VTLTVNGETHTAEVEPRLLLVHFLREHLNLTGTHIGCDTTHCGACTVLMNGRAVKSCTVL 67 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 V A G +I+T+EG+A +G++ P+QEGF HGLQCG+CTPGM++ A LL +NPDP E Sbjct 68 TVQADGATIKTIEGMA-ENGKMHPLQEGFHVEHGLQCGYCTPGMIMRAAELLAKNPDPTE 126 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 IR ISG +CRCTGY IV++IQ+AA Sbjct 127 DEIRWGISGNLCRCTGYVNIVKAIQYAA 154 >gi|149913807|ref|ZP_01902339.1| carbon monoxide dehydrogenase, small subunit [Roseobacter sp. AzwK-3b] gi|149812091|gb|EDM71922.1| carbon monoxide dehydrogenase, small subunit [Roseobacter sp. AzwK-3b] Length=161 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 90/155 (59%), Positives = 110/155 (71%), Gaps = 0/155 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 QV+MTVNG+P T ++E R LLV F+R+ L LTGTH GCDTS CG CVV V+G VKSCTM Sbjct 3 QVSMTVNGKPATGQIEGRTLLVDFIRETLNLTGTHVGCDTSQCGACVVHVNGKAVKSCTM 62 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 A A G + T+EG+A PDG LD VQ+ F HGLQCGFCTPGM+++A+ALL NP P Sbjct 63 FAAEAEGAEVLTIEGVAAPDGTLDTVQQAFHEHHGLQCGFCTPGMVMSAKALLAENPTPT 122 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVK 156 E IR+ + G ICRCTGY IV++I A+ K Sbjct 123 EAEIRDYLEGNICRCTGYHNIVKAIMAASGQDVSK 157 >gi|154253402|ref|YP_001414226.1| 2Fe-2S iron-sulfur cluster-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157352|gb|ABS64569.1| (2Fe-2S)-binding domain protein [Parvibaculum lavamentivorans DS-1] Length=154 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 93/148 (63%), Positives = 112/148 (76%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 V MTVNG+P +A++E RMLLV F+R+QL LTGTH GCDTS CG CVV VDG VKSCTML Sbjct 4 VAMTVNGKPASADIEARMLLVQFIREQLGLTGTHVGCDTSQCGACVVHVDGRAVKSCTML 63 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 A A G I T+EGLA PDG L PVQ+ F HGLQCGFCTPGM++TA ++ R PD DE Sbjct 64 ATQAEGAEILTIEGLA-PDGDLHPVQKAFREHHGLQCGFCTPGMIMTAVDMIRRKPDLDE 122 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 +T+R+ + G ICRCTGY IV++I A+ Sbjct 123 ETVRDELEGNICRCTGYHNIVKAILAAS 150 >gi|99081607|ref|YP_613761.1| (2Fe-2S)-binding [Ruegeria sp. TM1040] gi|99037887|gb|ABF64499.1| carbon-monoxide dehydrogenase small subunit [Ruegeria sp. TM1040] Length=161 Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 94/156 (61%), Positives = 110/156 (71%), Gaps = 1/156 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 +V+MTVNG PV+ VE R LLV FLRDQ LTGTH GCDTS CG CVV VDG VKSCTM Sbjct 3 KVSMTVNGNPVSGNVEGRTLLVSFLRDQQGLTGTHVGCDTSQCGACVVHVDGKAVKSCTM 62 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 LA+ A G + T+EG A PDG L+ +Q F HGLQCGFCTPGM+++A ALL NP P Sbjct 63 LALEAEGAEVATIEGQAAPDGTLNAIQAAFQEHHGLQCGFCTPGMVMSAAALLKENPKPS 122 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKA 157 E IR + G +CRCTGY IV++I AA+ Q V A Sbjct 123 EAEIRHYLEGNLCRCTGYHNIVKAI-MAASGQDVSA 157 >gi|345304602|ref|YP_004826504.1| carbon-monoxide dehydrogenase (acceptor) [Rhodothermus marinus SG0.5JP17-172] gi|345113835|gb|AEN74667.1| Carbon-monoxide dehydrogenase (acceptor) [Rhodothermus marinus SG0.5JP17-172] Length=159 Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 91/148 (62%), Positives = 115/148 (78%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 V +TVNGE TAEVEPR+LLVHFLR+ L LTGTH GCDT++CG C V ++G VKSCT+L Sbjct 2 VTLTVNGETHTAEVEPRLLLVHFLREHLNLTGTHIGCDTTHCGACTVLMNGRAVKSCTVL 61 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 V A G +I+T+EG+A +G++ P+QEGF HGLQCG+CTPGM++ A LL +NPDP E Sbjct 62 TVQADGATIKTIEGMA-ENGKMHPLQEGFHVEHGLQCGYCTPGMIMRAAELLAKNPDPTE 120 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 IR ISG +CRCTGY IV++IQ+AA Sbjct 121 DEIRWGISGNLCRCTGYVNIVKAIQYAA 148 >gi|295697195|ref|YP_003590433.1| (2Fe-2S)-binding domain-containing protein [Bacillus tusciae DSM 2912] gi|295412797|gb|ADG07289.1| (2Fe-2S)-binding domain protein [Bacillus tusciae DSM 2912] Length=159 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 94/148 (64%), Positives = 113/148 (77%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 V++ VNG TAEVEPR+LLVH LRD L LTGTH GCDTS CG C V +DG VKSCT+L Sbjct 8 VSLKVNGVERTAEVEPRLLLVHLLRDVLGLTGTHIGCDTSQCGVCTVLIDGRAVKSCTVL 67 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV A GH I TVEGLA +GQL PVQEGF HGLQCG+CTPG ++TA +L +NP+P + Sbjct 68 AVQADGHEITTVEGLA-QEGQLHPVQEGFWEKHGLQCGYCTPGAMMTAVEILRQNPNPTD 126 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 + IRE + G ICRCTGY IVR++++AA Sbjct 127 EEIREGLEGVICRCTGYENIVRAVKYAA 154 >gi|291295911|ref|YP_003507309.1| (2Fe-2S)-binding domain-containing protein [Meiothermus ruber DSM 1279] gi|290470870|gb|ADD28289.1| (2Fe-2S)-binding domain protein [Meiothermus ruber DSM 1279] Length=166 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 91/150 (61%), Positives = 110/150 (74%), Gaps = 1/150 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 +Q+ + VNG +EVEPR+LLVH+LR+ L LTGTH GCDTS CG C V +DG VKSCT Sbjct 5 VQIKVVVNGVEHHSEVEPRLLLVHYLRETLGLTGTHVGCDTSQCGACTVHLDGQAVKSCT 64 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 + AV A G SI T+EGL D L PVQEGF HGLQCGFCTPGM++ A LL+RNP P Sbjct 65 LFAVQADGSSITTIEGLGSVD-SLHPVQEGFWEMHGLQCGFCTPGMIMAAADLLNRNPQP 123 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAA 150 E+ IR A+ G +CRCTGY IVR++Q+AA Sbjct 124 SEEEIRHALEGNLCRCTGYHNIVRAVQYAA 153 >gi|313902888|ref|ZP_07836284.1| (2Fe-2S)-binding domain-containing protein [Thermaerobacter subterraneus DSM 13965] gi|313466823|gb|EFR62341.1| (2Fe-2S)-binding domain-containing protein [Thermaerobacter subterraneus DSM 13965] Length=182 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 94/151 (63%), Positives = 113/151 (75%), Gaps = 1/151 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 ++ TVNG EVEPR LL +FLR++L LTGTH GCDT++CG C V +DG PVKSCT+ Sbjct 7 RIKATVNGVTYEREVEPRRLLAYFLREELGLTGTHIGCDTTSCGACTVILDGRPVKSCTV 66 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 AV G I TVEGLA DGQL P+Q+GF HGLQCG+CTPGML+TA ALL RNP+P Sbjct 67 FAVQVDGSEIMTVEGLA-QDGQLHPLQKGFWDQHGLQCGYCTPGMLMTAYALLQRNPNPT 125 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAAH 152 E+ IR AISG +CRCTGY IV+++Q AAA Sbjct 126 EEEIRFAISGNLCRCTGYQNIVKAVQQAAAE 156 >gi|331695313|ref|YP_004331552.1| carbon-monoxide dehydrogenase [Pseudonocardia dioxanivorans CB1190] gi|326950002|gb|AEA23699.1| Carbon-monoxide dehydrogenase (acceptor) [Pseudonocardia dioxanivorans CB1190] Length=167 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/151 (60%), Positives = 113/151 (75%), Gaps = 1/151 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 ++ +TVNG EVE R+LLVH+LRD LTGTH GCDTSNCG C V ++G VKSC++ Sbjct 5 KIRVTVNGATSEDEVEARLLLVHYLRDVRGLTGTHVGCDTSNCGACTVLLNGRTVKSCSV 64 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 LAV A G + TVEGLA DG++ PVQ+GF +CHGLQCG+CTPGM++ A LL NPDP Sbjct 65 LAVAADGADVLTVEGLA-ADGEMSPVQQGFQQCHGLQCGYCTPGMVMAATGLLLDNPDPG 123 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAAAH 152 E +RE I G +CRCTGY+ IV S++WAA+H Sbjct 124 EDEVREGIEGNLCRCTGYSMIVDSVRWAASH 154 >gi|255264126|ref|ZP_05343468.1| (2Fe-2S) binding domain protein [Thalassiobium sp. R2A62] gi|255106461|gb|EET49135.1| (2Fe-2S) binding domain protein [Thalassiobium sp. R2A62] Length=161 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/149 (60%), Positives = 110/149 (74%), Gaps = 0/149 (0%) Query 2 QVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTM 61 QV+MTVNG+ V+ EVE RMLLV+FLR+ L+LTGTH GCDTS CG CVV V+G VK+CTM Sbjct 3 QVSMTVNGKAVSGEVEGRMLLVNFLREDLKLTGTHVGCDTSQCGACVVHVNGEAVKACTM 62 Query 62 LAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPD 121 A A G + T+EG A DG L+ +Q+ F HGLQCGFCTPGM+++A ALL+ NP+P Sbjct 63 FAAEADGADVATIEGQANADGSLNVIQQAFQDHHGLQCGFCTPGMVMSAAALLNDNPNPT 122 Query 122 EQTIREAISGQICRCTGYTTIVRSIQWAA 150 E IR + G ICRCTGY IV++I AA Sbjct 123 EHEIRAYLEGNICRCTGYHNIVKAIMAAA 151 >gi|163848998|ref|YP_001637042.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526960|ref|YP_002571431.1| (2Fe-2S)-binding domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163670287|gb|ABY36653.1| (2Fe-2S)-binding domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450839|gb|ACM55105.1| (2Fe-2S)-binding domain protein [Chloroflexus sp. Y-400-fl] Length=160 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/148 (62%), Positives = 111/148 (75%), Gaps = 1/148 (0%) Query 3 VNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTML 62 + +TVNG T+EVEPR+LLVH+LR+ L LTGTH GCDTS CG CVV ++GV VKSCT L Sbjct 4 ITVTVNGVRHTSEVEPRLLLVHYLREHLNLTGTHIGCDTSQCGACVVHINGVSVKSCTTL 63 Query 63 AVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDE 122 AV G I T+EGLA D QL P+QEGF HGLQCGFCTPGM++ A LL RNP+P E Sbjct 64 AVQCDGAEITTIEGLA-QDVQLHPLQEGFWEKHGLQCGFCTPGMIMAAADLLKRNPNPSE 122 Query 123 QTIREAISGQICRCTGYTTIVRSIQWAA 150 + IR + G +CRCTGY IVR++++AA Sbjct 123 EEIRHGLEGNLCRCTGYENIVRAVRYAA 150 >gi|332664774|ref|YP_004447562.1| carbon-monoxide dehydrogenase (acceptor) [Haliscomenobacter hydrossis DSM 1100] gi|332333588|gb|AEE50689.1| Carbon-monoxide dehydrogenase (acceptor) [Haliscomenobacter hydrossis DSM 1100] Length=162 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/150 (60%), Positives = 112/150 (75%), Gaps = 1/150 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 +++++T+NG+ T++VEPR LLV++LR+ L LTG H GCDTS+CG C V +DG VKSCT Sbjct 3 VKISVTINGKKYTSQVEPRQLLVYYLREALSLTGAHVGCDTSSCGACTVLIDGNAVKSCT 62 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 LAV G + TVEGLA +G L P+QEGF + HGLQCGFCTPGM+++A LL NP+P Sbjct 63 TLAVQVDGTHVTTVEGLA-KNGTLHPIQEGFRQEHGLQCGFCTPGMIMSAADLLQNNPNP 121 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAA 150 E IR A+ G CRCTGY IVRSIQWAA Sbjct 122 SETEIRHALEGNFCRCTGYHNIVRSIQWAA 151 >gi|297567079|ref|YP_003686051.1| (2Fe-2S)-binding domain-containing protein [Meiothermus silvanus DSM 9946] gi|296851528|gb|ADH64543.1| (2Fe-2S)-binding domain protein [Meiothermus silvanus DSM 9946] Length=164 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 92/150 (62%), Positives = 113/150 (76%), Gaps = 1/150 (0%) Query 1 MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCT 60 +++ + VNG T+EVEPR LLV++LR+ L LTGTH GCDTS CG CVV VDG VKSCT Sbjct 5 VKIRVRVNGVEHTSEVEPRQLLVYYLRETLGLTGTHVGCDTSQCGACVVHVDGQAVKSCT 64 Query 61 MLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDP 120 M AV A G +I T+EGL G G+L PVQEGF HGLQCGFCTPGM++ A LL++NP P Sbjct 65 MFAVQADGATITTIEGL-GELGRLHPVQEGFWEMHGLQCGFCTPGMIMAAADLLNKNPHP 123 Query 121 DEQTIREAISGQICRCTGYTTIVRSIQWAA 150 E+ IR A+ G +CRCTGY IVR++Q+AA Sbjct 124 SEEEIRHALEGNLCRCTGYHNIVRAVQYAA 153 Lambda K H 0.322 0.135 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128329112580 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40