BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0377

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607518|ref|NP_214891.1|  LysR family transcriptional regulat...   633    9e-180
gi|339293433|gb|AEJ45544.1|  LysR family transcriptional regulato...   631    4e-179
gi|31791554|ref|NP_854047.1|  LysR family transcriptional regulat...   630    1e-178
gi|183980678|ref|YP_001848969.1|  LysR family transcriptional reg...   592    3e-167
gi|240172153|ref|ZP_04750812.1|  LysR family transcriptional regu...   578    3e-163
gi|296167822|ref|ZP_06850007.1|  LysR family transcriptional regu...   571    4e-161
gi|289748862|ref|ZP_06508240.1|  transcriptional regulator, lysR-...   570    8e-161
gi|118616017|ref|YP_904349.1|  LysR family transcriptional regula...   563    2e-158
gi|119866552|ref|YP_936504.1|  LysR family transcriptional regula...   479    3e-133
gi|118472923|ref|YP_885148.1|  transcriptional regulatory protein...   479    3e-133
gi|281191482|gb|ADA57151.1|  LysR family transcriptional regulato...   475    5e-132
gi|108797467|ref|YP_637664.1|  LysR family transcriptional regula...   446    3e-123
gi|312140403|ref|YP_004007739.1|  lysr family transcriptional reg...   406    2e-111
gi|325675987|ref|ZP_08155670.1|  LysR family transcriptional regu...   388    7e-106
gi|119714493|ref|YP_921458.1|  substrate-binding protein LysR [No...   331    8e-89 
gi|302866396|ref|YP_003835033.1|  LysR substrate-binding protein ...   315    9e-84 
gi|315502807|ref|YP_004081694.1|  LysR family transcriptional reg...   314    1e-83 
gi|116670589|ref|YP_831522.1|  LysR family transcriptional regula...   179    7e-43 
gi|284044478|ref|YP_003394818.1|  LysR family transcriptional reg...   161    1e-37 
gi|331696456|ref|YP_004332695.1|  LysR family transcriptional reg...   138    1e-30 
gi|85705471|ref|ZP_01036569.1|  transcriptional regulator, LysR f...  89.4    8e-16 
gi|297530416|ref|YP_003671691.1|  LysR family transcriptional reg...  88.2    2e-15 
gi|56419943|ref|YP_147261.1|  LysR family transcriptional regulat...  83.6    4e-14 
gi|325001695|ref|ZP_08122807.1|  LysR family transcriptional regu...  82.0    1e-13 
gi|78043535|ref|YP_359484.1|  LysR family transcriptional regulat...  81.3    2e-13 
gi|261419611|ref|YP_003253293.1|  LysR family transcriptional reg...  80.5    4e-13 
gi|339502470|ref|YP_004689890.1|  HTH-type LysR family transcript...  80.5    4e-13 
gi|138894930|ref|YP_001125383.1|  LysR family transcriptional reg...  79.7    6e-13 
gi|297568142|ref|YP_003689486.1|  transcriptional regulator, LysR...  79.7    6e-13 
gi|254503417|ref|ZP_05115568.1|  LysR substrate binding domain pr...  79.3    7e-13 
gi|254462106|ref|ZP_05075522.1|  transcriptional regulator, LysR ...  77.8    2e-12 
gi|127513315|ref|YP_001094512.1|  LysR family transcriptional reg...  77.4    3e-12 
gi|218549570|ref|YP_002383361.1|  DNA-binding transcriptional reg...  75.9    8e-12 
gi|89055062|ref|YP_510513.1|  LysR family transcriptional regulat...  75.5    1e-11 
gi|92113678|ref|YP_573606.1|  LysR family transcriptional regulat...  75.1    1e-11 
gi|30468080|ref|NP_848967.1|  lysR-like transcriptional regulator...  74.3    2e-11 
gi|149912765|ref|ZP_01901299.1|  transcriptional regulator, LysR ...  74.3    2e-11 
gi|282897455|ref|ZP_06305457.1|  Transcriptional Regulator, LysR ...  74.3    3e-11 
gi|159045691|ref|YP_001534485.1|  transcriptional regulator [Dino...  73.6    4e-11 
gi|335041952|ref|ZP_08534979.1|  transcriptional regulator [Methy...  73.6    4e-11 
gi|312878800|ref|ZP_07738600.1|  transcriptional regulator, LysR ...  73.6    4e-11 
gi|282899491|ref|ZP_06307457.1|  Transcriptional Regulator, LysR ...  73.2    5e-11 
gi|260776746|ref|ZP_05885640.1|  transcriptional regulator LysR f...  73.2    6e-11 
gi|170750771|ref|YP_001757031.1|  LysR family transcriptional reg...  72.8    7e-11 
gi|254411057|ref|ZP_05024835.1|  LysR substrate binding domain pr...  72.8    7e-11 
gi|293410518|ref|ZP_06654094.1|  DNA-binding transcriptional regu...  72.8    7e-11 
gi|291567755|dbj|BAI90027.1|  LysR family transcriptional regulat...  72.0    1e-10 
gi|298489729|ref|YP_003719906.1|  LysR family transcriptional reg...  71.6    1e-10 
gi|255033957|ref|YP_003084578.1|  LysR family transcriptional reg...  71.6    2e-10 
gi|209526768|ref|ZP_03275290.1|  transcriptional regulator, LysR ...  71.2    2e-10 


>gi|15607518|ref|NP_214891.1| LysR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|15839762|ref|NP_334799.1| LysR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|148660143|ref|YP_001281666.1| LysR family transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
 48 more sequence titles
 Length=321

 Score =  633 bits (1633),  Expect = 9e-180, Method: Compositional matrix adjust.
 Identities = 321/321 (100%), Positives = 321/321 (100%), Gaps = 0/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM
Sbjct  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            IPGSGVGVTRFRPKVHVTLWS
Sbjct  301  IPGSGVGVTRFRPKVHVTLWS  321


>gi|339293433|gb|AEJ45544.1| LysR family transcriptional regulator [Mycobacterium tuberculosis 
CCDC5079]
Length=321

 Score =  631 bits (1628),  Expect = 4e-179, Method: Compositional matrix adjust.
 Identities = 320/321 (99%), Positives = 320/321 (99%), Gaps = 0/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVG ISTPRCIQAM
Sbjct  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGLISTPRCIQAM  300

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            IPGSGVGVTRFRPKVHVTLWS
Sbjct  301  IPGSGVGVTRFRPKVHVTLWS  321


>gi|31791554|ref|NP_854047.1| LysR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 gi|121636290|ref|YP_976513.1| LysR family transcriptional regulator [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|224988762|ref|YP_002643449.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 18 more sequence titles
 Length=321

 Score =  630 bits (1624),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 320/321 (99%), Positives = 320/321 (99%), Gaps = 0/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM
Sbjct  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            I GSGVGVTRFRPKVHVTLWS
Sbjct  301  IRGSGVGVTRFRPKVHVTLWS  321


>gi|183980678|ref|YP_001848969.1| LysR family transcriptional regulator [Mycobacterium marinum 
M]
 gi|183174004|gb|ACC39114.1| transcriptional regulatory protein (probably LysR-family) [Mycobacterium 
marinum M]
Length=321

 Score =  592 bits (1525),  Expect = 3e-167, Method: Compositional matrix adjust.
 Identities = 299/321 (94%), Positives = 307/321 (96%), Gaps = 0/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAA ELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAATELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASS FAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSTFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTS+FR+LICSRAVDIAIGPASESSIGSD S+F+RPFLKYQIITVVAPNSPLA 
Sbjct  121  VELSVHPTSQFRDLICSRAVDIAIGPASESSIGSDTSLFVRPFLKYQIITVVAPNSPLAV  180

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            GIP P+LLR QQWMLGP AGSV GEIATMLR LAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct  181  GIPTPSLLRQQQWMLGPPAGSVAGEIATMLRDLAIPESQQRIFQSDAAALEEVMRVGGAT  240

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            L IGFAVAKDLAAGRLVHVT PGLD+AGEWCVATL P+ARQPAVSELV FI+TPRCIQAM
Sbjct  241  LTIGFAVAKDLAAGRLVHVTSPGLDKAGEWCVATLPPAARQPAVSELVRFITTPRCIQAM  300

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            I GSGVGVTRFRPKVHVTLWS
Sbjct  301  IRGSGVGVTRFRPKVHVTLWS  321


>gi|240172153|ref|ZP_04750812.1| LysR family transcriptional regulator [Mycobacterium kansasii 
ATCC 12478]
Length=321

 Score =  578 bits (1491),  Expect = 3e-163, Method: Compositional matrix adjust.
 Identities = 293/321 (92%), Positives = 301/321 (94%), Gaps = 0/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMH+AALRKELDD LFTRTGAGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHIAALRKELDDQLFTRTGAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASS FAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSTFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTSRFR+LI SRAVDIAIGPASES  G DGS+F+RPFLKYQIITVVAPNSPLA 
Sbjct  121  VELSVHPTSRFRDLILSRAVDIAIGPASESCHGVDGSLFVRPFLKYQIITVVAPNSPLAV  180

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            GIP P LLR QQWMLGPSAGSVDGEIATMLR LAIPES QRIFQSDAAALEE+ RVGG T
Sbjct  181  GIPTPGLLRQQQWMLGPSAGSVDGEIATMLRDLAIPESHQRIFQSDAAALEEIRRVGGVT  240

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            L IGFAVAKDLAAGRLVHVTGPGLDR+GEWC +TLAPSARQPAVSELV FI+TPRC QAM
Sbjct  241  LTIGFAVAKDLAAGRLVHVTGPGLDRSGEWCASTLAPSARQPAVSELVRFITTPRCTQAM  300

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            I GSGVGV RFRPKVHVTLWS
Sbjct  301  IRGSGVGVARFRPKVHVTLWS  321


>gi|296167822|ref|ZP_06850007.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897020|gb|EFG76641.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=321

 Score =  571 bits (1472),  Expect = 4e-161, Method: Compositional matrix adjust.
 Identities = 288/321 (90%), Positives = 299/321 (94%), Gaps = 0/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAAAELG+SDAGVSM VAALRKELDDPLFTRTGAGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAAAELGVSDAGVSMLVAALRKELDDPLFTRTGAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAAS+ FAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASTTFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTSRFR+LICSRAVDIAIGPA E SIG D ++F+RPFLKYQII V APNSP+A 
Sbjct  121  VELSVHPTSRFRDLICSRAVDIAIGPAGEGSIGPDDALFVRPFLKYQIIAVAAPNSPVAL  180

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            G+P PALLR QQWMLGPSAG VDGEIATMLR LAIPESQQRIFQSDAAALEEV RVGG T
Sbjct  181  GVPTPALLRQQQWMLGPSAGGVDGEIATMLRDLAIPESQQRIFQSDAAALEEVQRVGGVT  240

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            L IGFAVAKDLAAGRL HV GPGLDR+GEWC ATLAP+ARQPAVSELV FI+TPRC QAM
Sbjct  241  LTIGFAVAKDLAAGRLTHVHGPGLDRSGEWCAATLAPAARQPAVSELVRFITTPRCTQAM  300

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            I GSGVGVTRFRPKVHVTLWS
Sbjct  301  IRGSGVGVTRFRPKVHVTLWS  321


>gi|289748862|ref|ZP_06508240.1| transcriptional regulator, lysR-family [Mycobacterium tuberculosis 
T92]
 gi|289689449|gb|EFD56878.1| transcriptional regulator, lysR-family [Mycobacterium tuberculosis 
T92]
Length=300

 Score =  570 bits (1470),  Expect = 8e-161, Method: Compositional matrix adjust.
 Identities = 292/297 (99%), Positives = 293/297 (99%), Gaps = 0/297 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCI  297
            LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGF   PR +
Sbjct  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFHQHPRGV  297


>gi|118616017|ref|YP_904349.1| LysR family transcriptional regulator [Mycobacterium ulcerans 
Agy99]
 gi|118568127|gb|ABL02878.1| transcriptional regulatory protein (probably LysR-family) [Mycobacterium 
ulcerans Agy99]
Length=310

 Score =  563 bits (1450),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 284/310 (92%), Positives = 295/310 (96%), Gaps = 0/310 (0%)

Query  12   VVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASRAVEI  71
            +VRLGSVRAAA ELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLAS AVEI
Sbjct  1    MVRLGSVRAAATELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASGAVEI  60

Query  72   LGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELSVHPTSRF  131
            LGLQQQTAIEVTEAAHGRRLLRIAASS FAEHAAPGLIELFSSRADDLSVELSVHPTS+F
Sbjct  61   LGLQQQTAIEVTEAAHGRRLLRIAASSTFAEHAAPGLIELFSSRADDLSVELSVHPTSQF  120

Query  132  RELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPMPALLRHQ  191
            R+LIC+RAVDIAIGPASESSIGSD S+F+RPFLKYQIITVVAPNSPLA GIP P+LLR Q
Sbjct  121  RDLICARAVDIAIGPASESSIGSDTSLFVRPFLKYQIITVVAPNSPLAVGIPTPSLLRQQ  180

Query  192  QWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLAIGFAVAKDL  251
            QWMLGP AGSV GEIATMLR LAIPESQQRIFQSDAAALEEVMRVGGATL IGFAVAKDL
Sbjct  181  QWMLGPPAGSVAGEIATMLRDLAIPESQQRIFQSDAAALEEVMRVGGATLTIGFAVAKDL  240

Query  252  AAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAMIPGSGVGVTRF  311
            AAGRLVHVT PGLD+AGEWCVATL P+ARQPAVSELV FI+TPRCIQAMI GSGVGVTRF
Sbjct  241  AAGRLVHVTSPGLDKAGEWCVATLPPAARQPAVSELVRFITTPRCIQAMIRGSGVGVTRF  300

Query  312  RPKVHVTLWS  321
            RPK+HVTLWS
Sbjct  301  RPKMHVTLWS  310


>gi|119866552|ref|YP_936504.1| LysR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433088|ref|YP_001068779.1| LysR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|119692641|gb|ABL89714.1| transcriptional regulator, LysR family [Mycobacterium sp. KMS]
 gi|126232888|gb|ABN96288.1| transcriptional regulator, LysR family [Mycobacterium sp. JLS]
Length=318

 Score =  479 bits (1232),  Expect = 3e-133, Method: Compositional matrix adjust.
 Identities = 241/321 (76%), Positives = 272/321 (85%), Gaps = 3/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAA ELG+SDAG+SMHV  LRKELDDPLF+RT AGLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAAEELGMSDAGISMHVTQLRKELDDPLFSRTSAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRA+EILGLQQQTAIEVTEAAHGRRLLRIAAS+ FAEHAAPGLIELFS+RADDL+
Sbjct  61   GLRLASRAIEILGLQQQTAIEVTEAAHGRRLLRIAASTMFAEHAAPGLIELFSARADDLT  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHPTSRFR+LI SRAVDI +GPA         ++ +RPFLKYQIITV AP +    
Sbjct  121  VELSVHPTSRFRDLIESRAVDITLGPAPAD---PGPALVVRPFLKYQIITVAAPETAAGP  177

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            G+  PA LR   WMLGPSAG VDGE+ATMLR L+IPES+QRIFQS+AAALEEV R GG T
Sbjct  178  GMQAPAQLREHDWMLGPSAGGVDGEVATMLRNLSIPESRQRIFQSEAAALEEVQRAGGVT  237

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            L +GFAV++DL++ RLV + G GL  +GEW  +TL P+AR PA SEL+ FI+TPRC QAM
Sbjct  238  LTLGFAVSRDLSSRRLVQIKGAGLQTSGEWFASTLTPAARPPASSELMRFITTPRCTQAM  297

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            I G+GVGVTRF+PKVHVTLWS
Sbjct  298  IRGTGVGVTRFKPKVHVTLWS  318


>gi|118472923|ref|YP_885148.1| transcriptional regulatory protein [Mycobacterium smegmatis str. 
MC2 155]
 gi|118174210|gb|ABK75106.1| probable transcriptional regulatory protein [Mycobacterium smegmatis 
str. MC2 155]
Length=317

 Score =  479 bits (1232),  Expect = 3e-133, Method: Compositional matrix adjust.
 Identities = 251/321 (79%), Positives = 269/321 (84%), Gaps = 4/321 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRA+SAVVRLGSVRAAA ELG+SDAGVSMHVA LRKELDDPLFTRT +GLAFTPG
Sbjct  1    MTPAQLRAFSAVVRLGSVRAAAEELGVSDAGVSMHVAQLRKELDDPLFTRTASGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHP  +F  LI SRAVDIA+GPA+     +D ++ +R FLKYQIITV  P++ L  
Sbjct  121  VELSVHPARQFGHLITSRAVDIALGPAAP----ADPNLVVRAFLKYQIITVTTPDNALLE  176

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
                PA LR Q W LGPS G+ DGEIA MLR LAIPE++QRIFQSDAAALEEV RVGG T
Sbjct  177  RGVTPASLREQPWQLGPSGGNADGEIAAMLRALAIPEARQRIFQSDAAALEEVRRVGGVT  236

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
              IGFAVAKDLA GRL  V GPGL   GEW   TL  SARQPAVSEL+ FI+TPRC QAM
Sbjct  237  PTIGFAVAKDLAGGRLAQVKGPGLQVGGEWFATTLPASARQPAVSELLRFITTPRCTQAM  296

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            I GSGVGV+RFRPKVHVTLWS
Sbjct  297  IRGSGVGVSRFRPKVHVTLWS  317


>gi|281191482|gb|ADA57151.1| LysR family transcriptional regulator [Mycobacterium sp. DSM 
3803]
Length=320

 Score =  475 bits (1222),  Expect = 5e-132, Method: Compositional matrix adjust.
 Identities = 238/322 (74%), Positives = 271/322 (85%), Gaps = 3/322 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRA+++VVRLGSVRAAA ELG+SDAG+SMHVA LRKELDDPLF+RT +GLAFTPG
Sbjct  1    MTPAQLRAFASVVRLGSVRAAAEELGMSDAGISMHVAQLRKELDDPLFSRTSSGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTAIEV EA+ GRRLLRIAASS FAEHAAPGLIELFSSRA DLS
Sbjct  61   GLRLASRAVEILGLQQQTAIEVNEASRGRRLLRIAASSGFAEHAAPGLIELFSSRAKDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVH   RF++L+ SRAVDIA+GP +      D SI +RPFL+Y ++TV AP +P A 
Sbjct  121  VELSVHSPGRFKDLVVSRAVDIALGPVAGPI--DDESITVRPFLQYHVLTVAAPGNPAAT  178

Query  181  GIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA  239
             +P P +LLR QQWMLGPSA +VDGEI ++LR LAIPE++QRIFQ+DAAALEE+ R    
Sbjct  179  SVPAPLSLLREQQWMLGPSASNVDGEIGSVLRALAIPEARQRIFQNDAAALEELQRAKAV  238

Query  240  TLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQA  299
            TLAIG  VAKDL AGRLVHV GPGL   GEWC  TL P+ARQPAVSELV FI+TPRC QA
Sbjct  239  TLAIGITVAKDLEAGRLVHVKGPGLQTPGEWCAMTLTPAARQPAVSELVRFITTPRCTQA  298

Query  300  MIPGSGVGVTRFRPKVHVTLWS  321
            M+ G+GVGV RF+PK+HVTLWS
Sbjct  299  MLRGTGVGVRRFKPKIHVTLWS  320


>gi|108797467|ref|YP_637664.1| LysR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|108767886|gb|ABG06608.1| transcriptional regulator, LysR family [Mycobacterium sp. MCS]
Length=301

 Score =  446 bits (1146),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 223/304 (74%), Positives = 255/304 (84%), Gaps = 3/304 (0%)

Query  18   VRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASRAVEILGLQQQ  77
            +RAAA ELG+SDAG+SMHV  LRKELDDPLF+RT AGLAFTPGGLRLASRA+EILGLQQQ
Sbjct  1    MRAAAEELGMSDAGISMHVTQLRKELDDPLFSRTSAGLAFTPGGLRLASRAIEILGLQQQ  60

Query  78   TAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELSVHPTSRFRELICS  137
            TAIEVTEAAHGRRLLRIAAS+ FAEHAAPGLIELFS+RADDL+VELSVHPTSRFR+LI S
Sbjct  61   TAIEVTEAAHGRRLLRIAASTMFAEHAAPGLIELFSARADDLTVELSVHPTSRFRDLIES  120

Query  138  RAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPMPALLRHQQWMLGP  197
            RAVDI +GPA         ++ +RPFLKYQIITV AP +    G+  PA LR   WMLGP
Sbjct  121  RAVDITLGPAPADP---GPALVVRPFLKYQIITVAAPETAAGPGMQAPAQLREHDWMLGP  177

Query  198  SAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLAIGFAVAKDLAAGRLV  257
            SAG VDGE+ATMLR L+IPES+QRIFQS+AAALEEV R GG TL +GFAV++DL++ RLV
Sbjct  178  SAGGVDGEVATMLRNLSIPESRQRIFQSEAAALEEVQRAGGVTLTLGFAVSRDLSSRRLV  237

Query  258  HVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAMIPGSGVGVTRFRPKVHV  317
             + G GL  +GEW  +TL P+AR PA SEL+ FI+TPRC QAMI G+GVGVTRF+PKVHV
Sbjct  238  QIKGAGLQTSGEWFASTLTPAARPPASSELMRFITTPRCTQAMIRGTGVGVTRFKPKVHV  297

Query  318  TLWS  321
            TLWS
Sbjct  298  TLWS  301


>gi|312140403|ref|YP_004007739.1| lysr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311889742|emb|CBH49059.1| putative LysR family transcriptional regulator [Rhodococcus equi 
103S]
Length=318

 Score =  406 bits (1044),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 210/321 (66%), Positives = 244/321 (77%), Gaps = 3/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTPAQLRAYSAVVRLGSVRAAA ELG++D+GVSMH+A LRKELDDPL+ R  +GLAFTPG
Sbjct  1    MTPAQLRAYSAVVRLGSVRAAARELGMTDSGVSMHIAQLRKELDDPLYCRRPSGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVEILGLQQQTA+EV++A +GRRLLRIAAS  FAEHAAPGLI+LF+ RA DLS
Sbjct  61   GLRLASRAVEILGLQQQTALEVSQAGNGRRLLRIAASPLFAEHAAPGLIDLFAGRAKDLS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVHP  +F  LI SRAVD+A+GP     +G    + L PFL+Y+++TV AP  P+A 
Sbjct  121  VELSVHPVRQFANLISSRAVDVALGP---RVLGERQPLCLHPFLQYEVLTVCAPQHPMAR  177

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
              P    LR QQW LGPSA   DG +  MLR L IP  +QRIFQSDAAA+E V R    T
Sbjct  178  TRPSLRQLREQQWFLGPSAAGGDGVMRHMLRALDIPHERQRIFQSDAAAVEAVRRSSALT  237

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            LA+GFA+  +L+ G L  V GP L  AGEWC  TL     QPA +EL+ F+STPRCIQAM
Sbjct  238  LALGFAIDDELSGGSLDLVEGPELRAAGEWCATTLHHQHLQPAATELLHFVSTPRCIQAM  297

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            I G+GV V  F+PKVHVTLWS
Sbjct  298  IRGTGVDVAHFKPKVHVTLWS  318


>gi|325675987|ref|ZP_08155670.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
 gi|325553225|gb|EGD22904.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
Length=307

 Score =  388 bits (996),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 200/310 (65%), Positives = 235/310 (76%), Gaps = 3/310 (0%)

Query  12   VVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASRAVEI  71
            +VRLGSVRAAA ELG++D+GVSMH+A LRKELDDPL+ R  +GLAFTPGGLRLASRAVEI
Sbjct  1    MVRLGSVRAAARELGMTDSGVSMHIAQLRKELDDPLYCRRPSGLAFTPGGLRLASRAVEI  60

Query  72   LGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELSVHPTSRF  131
            LGLQQQTA+EV++A +GRRLLRIAAS  FAEHAAPGLI+LF+ RA DLSVELSVHP  +F
Sbjct  61   LGLQQQTALEVSQAGNGRRLLRIAASPLFAEHAAPGLIDLFAGRAKDLSVELSVHPVRQF  120

Query  132  RELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPMPALLRHQ  191
              LI SRAVD+A+GP     +G    + L PFL+Y+++TV AP  P+A   P    LR Q
Sbjct  121  ANLISSRAVDVALGP---RVLGERQPLCLHPFLQYEVLTVCAPQHPMARTRPSLRQLREQ  177

Query  192  QWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLAIGFAVAKDL  251
            QW LGPSA   DG +  MLR L IP  +QRIFQSDAAA+E V R    TLA+GFA+  +L
Sbjct  178  QWFLGPSAAGGDGVMRHMLRALDIPHERQRIFQSDAAAVEAVRRSSALTLALGFAIDDEL  237

Query  252  AAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAMIPGSGVGVTRF  311
            +AG L  V GP L  AGEWC  TL     QPA +EL+ F+STPRCIQAMI G+GV VT F
Sbjct  238  SAGSLDLVEGPELRAAGEWCATTLHHQHLQPAATELLHFVSTPRCIQAMIRGTGVDVTHF  297

Query  312  RPKVHVTLWS  321
            +PKVHVTLWS
Sbjct  298  KPKVHVTLWS  307


>gi|119714493|ref|YP_921458.1| substrate-binding protein LysR [Nocardioides sp. JS614]
 gi|119535154|gb|ABL79771.1| LysR, substrate-binding protein [Nocardioides sp. JS614]
Length=318

 Score =  331 bits (849),  Expect = 8e-89, Method: Compositional matrix adjust.
 Identities = 176/321 (55%), Positives = 220/321 (69%), Gaps = 3/321 (0%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTP QLRA++ VVRLGSV+AAAAEL +S+A VS+HV  LRKEL D LF RT +GLAFTPG
Sbjct  1    MTPTQLRAFATVVRLGSVKAAAAELEVSEAAVSLHVGQLRKELGDQLFNRTASGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRAVE+LGLQ +T +EV EA  GRR+LR+  +S FAE+AAPGLI LF+ RA DL 
Sbjct  61   GLRLASRAVELLGLQDRTVLEVREAGVGRRMLRLGTTSLFAEYAAPGLIGLFADRARDLD  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            VELSVH    F +L+ +R VD  +GP   +    D ++  + FL YQ++ VV P  P+  
Sbjct  121  VELSVHRARDFEQLLLTRTVDAVVGPRPAT---GDPALISKLFLNYQVLAVVGPEHPVTR  177

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            G P  A+LR Q W+LGPSA    G I  +L+ + +PE +Q+IFQS AAALEE  R  G T
Sbjct  178  GQPGIAMLRDQTWLLGPSAADDAGVIPGLLQRIGVPEERQQIFQSHAAALEEAKRGRGIT  237

Query  241  LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM  300
            LA+ FAVA+DLA G LV V G  +   G W ++ L      PA  E+  F++TPR  QAM
Sbjct  238  LAVAFAVAQDLATGALVRVPGRPVQGQGSWNISILGGERATPAAEEMARFVTTPRATQAM  297

Query  301  IPGSGVGVTRFRPKVHVTLWS  321
            + G GV   RF+P VHVTLWS
Sbjct  298  LRGRGVTHGRFKPAVHVTLWS  318


>gi|302866396|ref|YP_003835033.1| LysR substrate-binding protein [Micromonospora aurantiaca ATCC 
27029]
 gi|302569255|gb|ADL45457.1| LysR substrate-binding [Micromonospora aurantiaca ATCC 27029]
Length=318

 Score =  315 bits (806),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 175/322 (55%), Positives = 217/322 (68%), Gaps = 5/322 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTP QLRAY AVVRLGSV+ AAA+L +S++ VS+ +A LR+E  D LF+RT AGLAFTPG
Sbjct  1    MTPTQLRAYVAVVRLGSVKQAAAQLEVSESAVSLLIAQLRREFGDQLFSRTAAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRA E+LGLQ +T +EV+ AAHGRR+LR+AASS FAE AAP LIELF+ RA DL 
Sbjct  61   GLRLASRAAEMLGLQDRTVLEVSSAAHGRRMLRVAASSEFAEFAAPRLIELFARRAADLD  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            +ELSV     F  L+ +RA DIA+GP       ++ +I  RP + Y+++TVV P+ PL A
Sbjct  121  IELSVCDPGSFESLLLTRAADIAMGPLPPV---AEPAISCRPMMNYRLVTVVGPDHPL-A  176

Query  181  GIPM-PALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA  239
            G+P  P  LR Q W+LGPSA +  G +  MLR L +PE +Q+IFQS AAAL E  R  G 
Sbjct  177  GVPASPGQLRDQTWLLGPSATNTLGAVPAMLRRLGVPEERQQIFQSHAAALGEAQRGRGI  236

Query  240  TLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQA  299
              A+ F VA D+  G+LV ++GP       W    L         +EL  F STPR IQA
Sbjct  237  APALSFTVAPDVRGGQLVALSGPHATAEAVWHSLVLVTPGTPSVAAELCRFASTPRAIQA  296

Query  300  MIPGSGVGVTRFRPKVHVTLWS  321
            M+ G GV V  FRP VHVTLWS
Sbjct  297  MMRGVGVAVNHFRPSVHVTLWS  318


>gi|315502807|ref|YP_004081694.1| LysR family transcriptional regulator [Micromonospora sp. L5]
 gi|315409426|gb|ADU07543.1| transcriptional regulator, LysR family [Micromonospora sp. L5]
Length=318

 Score =  314 bits (805),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 175/322 (55%), Positives = 216/322 (68%), Gaps = 5/322 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MTP QLRAY AVVRLGSV+ AAA+L +S++ VS+ +  LR+E  D LFTRT AGLAFTPG
Sbjct  1    MTPTQLRAYVAVVRLGSVKQAAAQLEVSESAVSLLIGQLRREFGDQLFTRTAAGLAFTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            GLRLASRA E+LGLQ +T +EV+ AAHGRR+LR+AASS FAE AAP LIELF+ RA DL 
Sbjct  61   GLRLASRAAEMLGLQDRTVLEVSSAAHGRRMLRVAASSEFAEFAAPRLIELFARRAADLD  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            +ELSV     F  L+ +RA DIA+GP       ++ +I  RP + Y+++TVV P+ PL A
Sbjct  121  IELSVCDPGSFESLLLTRAADIAMGPLPPV---AEPAISCRPMMNYRLVTVVGPDHPL-A  176

Query  181  GIPM-PALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA  239
            G+P  P  LR Q W+LGPSA +  G +  MLR L +PE +Q+IFQS AAAL E  R  G 
Sbjct  177  GVPASPGQLRDQTWLLGPSATNTLGAVPAMLRRLGVPEERQQIFQSHAAALGEAQRGRGI  236

Query  240  TLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQA  299
              A+ F VA D+  G+LV ++GP       W    L         +EL  F STPR IQA
Sbjct  237  APALSFTVAPDVRGGQLVALSGPHATAEAVWHSLVLVTPGTPSVAAELCRFASTPRAIQA  296

Query  300  MIPGSGVGVTRFRPKVHVTLWS  321
            M+ G GV V  FRP VHVTLWS
Sbjct  297  MMRGVGVAVNHFRPSVHVTLWS  318


>gi|116670589|ref|YP_831522.1| LysR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610698|gb|ABK03422.1| transcriptional regulator, LysR family [Arthrobacter sp. FB24]
Length=327

 Score =  179 bits (453),  Expect = 7e-43, Method: Compositional matrix adjust.
 Identities = 133/329 (41%), Positives = 182/329 (56%), Gaps = 12/329 (3%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT +QLRA++ V RLGS+ AAAA L +S+  VS  +AALR++L DPLF R   G+A TPG
Sbjct  3    MTLSQLRAFALVARLGSLHAAAAALAVSEPAVSSALAALRRDLGDPLFVRAAGGIALTPG  62

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G  LA  A EI+GL  Q   EV+ A     LLRI A++ FAEHAA  L++LF+ R    S
Sbjct  63   GRALADYAQEIVGLADQARWEVSHATTDAGLLRIVATAPFAEHAAGRLLDLFTKRVPGAS  122

Query  121  VELSVHPTSRFRELICSRAVDIAIG--PASESSIGSDGSIFLRPFLKYQIITVVAPNSPL  178
            V++ V   +    L+  RA DIA+G  P   +  G+D  + + PFL+YQ + VVA + PL
Sbjct  123  VDVVVESAANIASLLLDRAFDIALGAMPTQPAGPGADVGLEMVPFLRYQRVFVVAASHPL  182

Query  179  A---AGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLA-IPESQQRIFQSDAAALEEVM  234
            A     +P+  LL  + W  GPS    + +    L  +  +PE  +   ++DA A    +
Sbjct  183  AVLHGPVPLARLL-DRPWFAGPSGIQSETDEGRWLSSMGVVPEVIRLSSETDALA---AV  238

Query  235  RVG-GATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFIST  293
            R G G TLA+G  V  +L  G LV V   G   +G W  +TL+          L  F++T
Sbjct  239  RAGEGLTLAVGHIVRAELQTGVLVRVPVVGTPVSGLWWASTLSHGRTTSKAKALQRFVTT  298

Query  294  PRCIQAMI-PGSGVGVTRFRPKVHVTLWS  321
            P    AM+ PG   G+ R   KVHV LWS
Sbjct  299  PDATAAMVAPGGSRGLERRGSKVHVALWS  327


>gi|284044478|ref|YP_003394818.1| LysR family transcriptional regulator [Conexibacter woesei DSM 
14684]
 gi|283948699|gb|ADB51443.1| transcriptional regulator, LysR family [Conexibacter woesei DSM 
14684]
Length=324

 Score =  161 bits (408),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 119/324 (37%), Positives = 168/324 (52%), Gaps = 7/324 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT AQL+++  V RLGSVRAAAAEL ++D  +S+ V ALR+E  D LF R+G G+A TPG
Sbjct  1    MTLAQLQSFVLVARLGSVRAAAAELEVTDPAISVAVGALRREFGDELFVRSGRGIALTPG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G RLA+ A EILGL +Q    V +     R + +AA+   AEH  P L++ F +R DDL 
Sbjct  61   GRRLAALASEILGLAEQARRSVRDTPDQPRRIEVAATGVVAEHVGP-LLDAFGARDDDLE  119

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA-  179
            + +   P + F +L+  R  DIA+GP     +    +I   PFL+ + + V  P  PLA 
Sbjct  120  IAVDAVPGAGFADLLEHRRADIALGP--HPGLERAATIATVPFLRCRCVVVATPGHPLAR  177

Query  180  -AGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGG  238
              GI  P+ L  ++W++GP        +        +   +  ++ S AAA+       G
Sbjct  178  RRGI-APSALAAERWLVGPPPVDPTTGVGLFFERHGLAPREIGVYTSHAAAIAAAGAGDG  236

Query  239  ATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQ  298
              L +  +V  +L    LV +   G      W  +TL      PA   L  F +TP  + 
Sbjct  237  IALTLHHSVRVELRRRTLVPLDVRGTPLVELWHASTLGLDRAPPAALALQRFATTPEAMH  296

Query  299  AMIPG-SGVGVTRFRPKVHVTLWS  321
            AM  G +G    R RP VHVTLWS
Sbjct  297  AMSAGRAGTTSARARPPVHVTLWS  320


>gi|331696456|ref|YP_004332695.1| LysR family transcriptional regulator [Pseudonocardia dioxanivorans 
CB1190]
 gi|326951145|gb|AEA24842.1| transcriptional regulator, LysR family [Pseudonocardia dioxanivorans 
CB1190]
Length=315

 Score =  138 bits (348),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 111/326 (35%), Positives = 159/326 (49%), Gaps = 16/326 (4%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT  QL A+  V RLGSV+AAA  L +S+  VS  +AALRK L DPL  R+G G+  T G
Sbjct  1    MTLTQLSAFVLVARLGSVKAAANALSVSEPAVSQALAALRKYLGDPLLVRSGNGMTMTAG  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G RL + A +++ L  +    V  A      LR+ A S   E  A  L E F +R+   +
Sbjct  61   GTRLLAIAAQMVALGAEAESAVRSAKGAPEQLRLVAPSPVVEFVAGPLGETFGARSSG-T  119

Query  121  VELS--VHPTSRFRELICSRAVDIAIGP--ASESSIGSDGSIFLRPFLKYQIITVVAPNS  176
            +E+S  V  T+    L+  R  D+A+GP    E S+G    +   P  + +++ + AP++
Sbjct  120  IEISSGVATTAEMGALVSQRLADVALGPHLGGERSMG----LVSEPIFRARLVVLAAPDA  175

Query  177  PLAAGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV  236
                G P         W++  SA   D ++  +LR   IPES   +F +  AA +   R 
Sbjct  176  RF-TGPPA-----RWPWLVETSATDPDSDVGRLLRAARIPESSLSVFPTQTAAWDAAARG  229

Query  237  GGATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRC  296
             G    I       +    L  V  PG      W V+TL    R  A S L  F+STP  
Sbjct  230  AGVAPGIAHLAVHHVRRRELTVVELPGTPLDVVWHVSTLPVDRRSAAASSLRHFLSTPEA  289

Query  297  IQAM-IPGSGVGVTRFRPKVHVTLWS  321
            ++ +  PG G+   RFRP V+VT+WS
Sbjct  290  MKLLRAPGEGLAPARFRPPVYVTIWS  315


>gi|85705471|ref|ZP_01036569.1| transcriptional regulator, LysR family protein [Roseovarius sp. 
217]
 gi|85669896|gb|EAQ24759.1| transcriptional regulator, LysR family protein [Roseovarius sp. 
217]
Length=290

 Score = 89.4 bits (220),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 59/165 (36%), Positives = 90/165 (55%), Gaps = 5/165 (3%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT  Q+ A+  V RLG  R AA +L L+   +S  +A L +EL  PLF R G+GL  T  
Sbjct  1    MTLDQITAFLWVARLGGFRKAAEQLHLTQPAISTRIAKLEEELATPLFERDGSGLTLTRQ  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G  L S A ++L +Q +    V + A    L RI AS   A+   P  ++ FS+    ++
Sbjct  61   GTLLLSYARQMLFVQDEIRKHVADTAGLTGLFRIGASETIAQSWLPDFLKAFSAVYPRIN  120

Query  121  VELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPF  163
            ++L+V  ++  RE + +R +D+A+  GP SE S+    +I L PF
Sbjct  121  IDLTVDISTDLRESLLTRRLDLALLMGPVSEFSV---ENIALPPF  162


>gi|297530416|ref|YP_003671691.1| LysR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297253668|gb|ADI27114.1| transcriptional regulator, LysR family [Geobacillus sp. C56-T3]
Length=298

 Score = 88.2 bits (217),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 70/287 (25%), Positives = 122/287 (43%), Gaps = 12/287 (4%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            M   +L+ +  +  + +    A  L LS   VS+H+  L KE    LF R+   L  TP 
Sbjct  1    MYYDELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G  L  RA +++ L +QT  ++ E  H  +  L+I AS    E+  P L+  F  R  +L
Sbjct  61   GELLYDRAKQMVALYEQTKQDILEHHHSVKGKLKIGASFTIGEYILPPLLPDFQKRYPEL  120

Query  120  SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP  177
             +E+ +  T    EL+ S  VDI +  G  +E  +       + PF++ +++ V +    
Sbjct  121  ELEVMIGNTKEIVELVKSYQVDIGLIEGQTNEKELS------VHPFMQDELVIVASNRHE  174

Query  178  LAAGIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV  236
            LA    +  A L+++ W+               +R   +      I  S+    E ++  
Sbjct  175  LAQKEEVTIAKLQNEAWVAREVGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLING  234

Query  237  GGATLAIGFAVAKDLAAGRL--VHVTGPGLDRAGEWCVATLAPSARQ  281
               +L     VA+D+  G L  VH+  P   R   +  A +  + + 
Sbjct  235  NALSLLSRSVVARDIEHGHLSIVHLNHPPFYRMFSYIYAPIMENKQN  281


>gi|56419943|ref|YP_147261.1| LysR family transcriptional regulator [Geobacillus kaustophilus 
HTA426]
 gi|56379785|dbj|BAD75693.1| transcriptional regulator (LysR family) [Geobacillus kaustophilus 
HTA426]
Length=298

 Score = 83.6 bits (205),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 69/287 (25%), Positives = 121/287 (43%), Gaps = 12/287 (4%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            M   +L+ +  +  + +    A  L LS   VS+H+  L KE    LF R+   L  TP 
Sbjct  1    MYYEELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G  L  RA +++ L +QT  ++ E  H  +  L+I AS    E+  P L+  F  R  +L
Sbjct  61   GELLYDRAKQMVALYEQTKQDILEHHHSVKGKLKIGASFTIGEYILPPLLPDFQKRYPEL  120

Query  120  SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP  177
             +E+ +  T    EL+ S  VDI +  G  +E  +       + PF++ +++ V +    
Sbjct  121  ELEVMIGNTKEIVELVRSYQVDIGLIEGQTNEKELS------VHPFMQDELVIVASNRHE  174

Query  178  LAAGIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV  236
            LA    +  A L+++ W+               +R   +      I  S+    E ++  
Sbjct  175  LAQKEEVTIAELQNEAWVAREVGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLING  234

Query  237  GGATLAIGFAVAKDLAAGRL--VHVTGPGLDRAGEWCVATLAPSARQ  281
               +L     VA+D+  G L  V +  P   R   +  A +  + + 
Sbjct  235  NALSLLSRSVVARDIEHGHLSIVRLNHPPFYRMFSYIYAPIMENKQN  281


>gi|325001695|ref|ZP_08122807.1| LysR family transcriptional regulator [Pseudonocardia sp. P1]
Length=224

 Score = 82.0 bits (201),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 58/176 (33%), Positives = 92/176 (53%), Gaps = 8/176 (4%)

Query  2    TPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGG  61
            T A++RA+ A+   GSVR AAA L ++++ VS  V AL +E+  PL  R G G+  TP G
Sbjct  10   TTARMRAFVALADQGSVRGAAARLVVTESTVSAAVRALAEEVGVPLVERDGRGVRLTPAG  69

Query  62   LRLASRAVEILGL---QQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD  118
             R A  A ++LGL       A    +  HGR  +R+AA +   EH  P L+  F  R   
Sbjct  70   HRYAGYARQVLGLLEEGAAAARGEADPEHGR--VRLAAVTTAGEHLLPDLLAGFRDRHPG  127

Query  119  LSVELSVHPTSRFRELICSRAVDIAIG---PASESSIGSDGSIFLRPFLKYQIITV  171
            +++E+ V P+ R   ++    VD+ +    PA+ +  G+ G   +R   +  ++ V
Sbjct  128  VTLEVDVAPSDRVWPMLAHHEVDVVVAGRPPAAATGPGASGPPLVRAVRENTLVVV  183


>gi|78043535|ref|YP_359484.1| LysR family transcriptional regulator [Carboxydothermus hydrogenoformans 
Z-2901]
 gi|77995650|gb|ABB14549.1| transcriptional regulator, LysR family [Carboxydothermus hydrogenoformans 
Z-2901]
Length=301

 Score = 81.3 bits (199),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 76/301 (26%), Positives = 128/301 (43%), Gaps = 11/301 (3%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            M   QL A+  +V  GS+  AA  + LS   +S  +AAL  +L   L  RT  G+  T  
Sbjct  1    MNLNQLEAFCNIVEQGSISKAAKLMHLSQPALSTQIAALENQLQVKLMERTNRGIELTEA  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAH-GRRLLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G  L   A  I  L +    E+    +     L I A+S    +A P  I +F  + +  
Sbjct  61   GETLLYYAKRICNLVKNLNEEIERLKNLEEEELSIGAASTIGGYALPCSIYIFQEKYESA  120

Query  120  SVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA  179
             ++L++  T +  E +  R +DI +    ES+I S+   F+   L Y  + +V PN+   
Sbjct  121  RIKLTIMNTEKVIEALLDRQIDIGL---VESNIESNE--FISSHLTYDELVLVVPNNNSY  175

Query  180  AGIPMPAL--LRHQQWMLGPSAGSVDGEIATML--RGLAIPESQQRIFQSDAAALEEVMR  235
                +  L  LR   +++      +   I   L  +GL I +    +  +   A++  + 
Sbjct  176  KNKEILTLDELRTLPFIIREKGSGIRQTIEKALAEKGLNISDLNIVMEVNSIDAIKVAVE  235

Query  236  VG-GATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTP  294
             G G +L   FAV K+L  G L  +    +     +   TL    R     + + FI++P
Sbjct  236  SGKGVSLLPRFAVKKELRTGSLKSIKVKDISLLHPFVAITLKNKKRSLLEKKFLAFINSP  295

Query  295  R  295
            +
Sbjct  296  K  296


>gi|261419611|ref|YP_003253293.1| LysR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319766429|ref|YP_004131930.1| LysR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376068|gb|ACX78811.1| transcriptional regulator, LysR family [Geobacillus sp. Y412MC61]
 gi|317111295|gb|ADU93787.1| transcriptional regulator, LysR family [Geobacillus sp. Y412MC52]
Length=298

 Score = 80.5 bits (197),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 111/260 (43%), Gaps = 10/260 (3%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            M   +L+ +  +  + +    A  L LS   VS+H+  L KE    LF R+   L  TP 
Sbjct  1    MYYDELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G  L  RA +++ L +QT  ++ E  H  +  L I AS    E+  P L+  F  R  +L
Sbjct  61   GELLYDRAKQMMVLYEQTKQDILEHHHSVKGKLTIGASFTIGEYILPPLLPDFQKRYPEL  120

Query  120  SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP  177
             +E+ +  T    EL+ S  VDI +  G  +E  +       + PF++ +++ V +    
Sbjct  121  ELEVMIGNTKEIVELVKSYQVDIGLIEGQTNEKELS------VHPFMQDELVIVASNRHE  174

Query  178  LAAGIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV  236
            LA    +  A L+++ W+               +R   +      I  S+    E ++  
Sbjct  175  LAQKEEVTIAELQNEAWVAREVGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLING  234

Query  237  GGATLAIGFAVAKDLAAGRL  256
               +L     VA+D+  G L
Sbjct  235  NALSLLSRSVVARDIEHGHL  254


>gi|339502470|ref|YP_004689890.1| HTH-type LysR family transcriptional regulator [Roseobacter litoralis 
Och 149]
 gi|338756463|gb|AEI92927.1| putative HTH-type transcriptional regulator, LysR family [Roseobacter 
litoralis Och 149]
Length=292

 Score = 80.5 bits (197),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 51/156 (33%), Positives = 79/156 (51%), Gaps = 2/156 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT  Q++ +  V RLG  R AA  L LS   VS  +A L +EL  PLF R    L  T  
Sbjct  1    MTFDQIKTFLWVARLGGFRKAADRLNLSQPAVSTRIANLEQELRVPLFERGRGDLVLTKH  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G  L S A ++L ++++    V   +    L R+ AS   A+   P  ++ FS +   ++
Sbjct  61   GTLLLSYAEQMLFVEEEIKQRVANPSEAEGLFRVGASETIAQAWLPDFLKAFSEQYPRVN  120

Query  121  VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS  154
            V+L+V  +   R  +  R +D+A+  GP SE S+ +
Sbjct  121  VDLTVDISLNLRAELLERKLDLALLMGPVSEFSVEN  156


>gi|138894930|ref|YP_001125383.1| LysR family transcriptional regulator [Geobacillus thermodenitrificans 
NG80-2]
 gi|196248503|ref|ZP_03147204.1| transcriptional regulator, LysR family [Geobacillus sp. G11MC16]
 gi|134266443|gb|ABO66638.1| Transcriptional regulator (LysR family) [Geobacillus thermodenitrificans 
NG80-2]
 gi|196212228|gb|EDY06986.1| transcriptional regulator, LysR family [Geobacillus sp. G11MC16]
Length=298

 Score = 79.7 bits (195),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 64/285 (23%), Positives = 118/285 (42%), Gaps = 8/285 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            M   +L+ +  +  + +    A  L LS   VS+H+  L KE    LF R+   L  TP 
Sbjct  1    MYYDELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G  L  RA +++ L +QT  ++ E  H  +  L+I AS    E+  P  +  F  R  +L
Sbjct  61   GELLYDRAKQMMALYEQTKQDILEHHHSVKGELKIGASFTIGEYILPLFLLDFQQRYPEL  120

Query  120  SVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA  179
             +E+ +  T    EL+ S  VDI +         +D  + + PF++ +++ V +    LA
Sbjct  121  ELEVMIGNTKEIVELVRSYQVDIGLIEGQ----TNDKELSVHPFMQDELVIVASNCHELA  176

Query  180  AGIPMPAL-LRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGG  238
                +    L+++ W+               +R   +      I  S+    E ++    
Sbjct  177  QKEEVTITDLQNETWVAREIGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLINGNA  236

Query  239  ATLAIGFAVAKDLAAGRL--VHVTGPGLDRAGEWCVATLAPSARQ  281
             +L     VA+D+  G L  + +  P   R   +  + +  + + 
Sbjct  237  LSLLSRSVVARDIEHGHLSIIRLKNPPFYRMFSYIYSPIMENKQN  281


>gi|297568142|ref|YP_003689486.1| transcriptional regulator, LysR family [Desulfurivibrio alkaliphilus 
AHT2]
 gi|296924057|gb|ADH84867.1| transcriptional regulator, LysR family [Desulfurivibrio alkaliphilus 
AHT2]
Length=311

 Score = 79.7 bits (195),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 129/308 (42%), Gaps = 33/308 (10%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            +T  QL  + AV     V  A+A+L L+ + VSM +  L+ +LD PLF R G  L F   
Sbjct  3    ITLRQLEIFVAVAETSQVTKASAKLHLTQSAVSMALNELQNQLDGPLFDRKGRNLLFNDR  62

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR------LLRIAASSAFAEHAAPGLIELFSS  114
            G  L   A EILG      I   E+  G +       L+I ASS    +  P  I +F  
Sbjct  63   GRYLLPLAKEILG-----QINNIESLLGEKSGSVAGSLKIVASSTIGNYVLPYFIGVFK-  116

Query  115  RADDLSVELSVHPTSRFRELICS-RAVDIAIGPASESSIG------SDGSIFLRPFLKYQ  167
                      +HP      L+C+ R  +  I    E+ +G      ++  + + P+L+ +
Sbjct  117  ---------KLHPQVSLDMLVCNTRHAETMIAEG-EAGLGFVEGEVTNDQVRIIPWLEDE  166

Query  168  IITVVAPNSPLAA--GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQS  225
            ++ +  P +PLA      +P  L   +W++    GS  G++     G  +P  +  +   
Sbjct  167  LVVIAGPTNPLAGKENFELPGDLELCEWII-REKGSGTGQVFKKKLGRHLPGLRVAMELG  225

Query  226  DAAALEEVMRVGGATLAI-GFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAV  284
               A+++ +  GG    +    V +++  G L  ++  GLD      +      A    +
Sbjct  226  HTEAIKKAVEAGGGVACLSSLTVCREVEEGWLASLSVKGLDMRRTLQIIHYKNKAMTGLM  285

Query  285  SELVGFIS  292
             E V F S
Sbjct  286  QEFVAFCS  293


>gi|254503417|ref|ZP_05115568.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439488|gb|EEE46167.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
Length=298

 Score = 79.3 bits (194),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 47/156 (31%), Positives = 81/156 (52%), Gaps = 2/156 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT  QLRA+ AV R+G VR AA ++ +S   +S  +++L   L   LF+R   G++ T  
Sbjct  6    MTLEQLRAFLAVARMGGVRKAAEQMNISQPAISARISSLEDYLGTRLFSRETTGVSLTAK  65

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G+ L   A +I+ + ++   +V        LLR+  +   A+   P  +    +    L+
Sbjct  66   GVVLRDYAEQIMAITERIKGDVMSDDSISSLLRLGVAETIAQTWLPDFLAALHTTFQRLN  125

Query  121  VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS  154
            +E++V  +   RE++  RA+D+ I  GP SE S  +
Sbjct  126  IEVTVDTSFNLREMLLDRALDLTILMGPISEYSTDN  161


>gi|254462106|ref|ZP_05075522.1| transcriptional regulator, LysR family [Rhodobacterales bacterium 
HTCC2083]
 gi|206678695|gb|EDZ43182.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium 
HTCC2083]
Length=292

 Score = 77.8 bits (190),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 50/156 (33%), Positives = 81/156 (52%), Gaps = 2/156 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT  Q++ +  V RLG  R AA  L LS   VS  +A L  EL  PLF R+ + +  T  
Sbjct  1    MTFDQIKTFLWVARLGGFRKAAERLHLSQPAVSTRIANLEDELRVPLFERSQSDVILTKH  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G  L S A ++L ++++    V   +    L R+ AS   A+   P  ++ FS++   ++
Sbjct  61   GSLLLSYAEQMLFVEEEIKQRVANPSETEGLFRVGASETIAQAWLPEFLKAFSTQYPRVN  120

Query  121  VELSVHPTSRFRELICSRAVDIA--IGPASESSIGS  154
            V+L+V  +   R  +  R +D+A  +GP SE S+ +
Sbjct  121  VDLTVDISLNLRTALLERRLDLAFLMGPVSEFSVEN  156


>gi|127513315|ref|YP_001094512.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126638610|gb|ABO24253.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
Length=304

 Score = 77.4 bits (189),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 72/267 (27%), Positives = 120/267 (45%), Gaps = 15/267 (5%)

Query  5    QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL  64
            Q+  + AV  L SV AAA +L ++ + VSM +  L   L  PLF R G  L  +  G  L
Sbjct  7    QIMVFDAVASLESVSAAARKLSMTQSAVSMSLGQLENLLGRPLFIRQGNRLTLSHWGNWL  66

Query  65   ASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELS  124
              RA  +L   QQ  + + E        R+ +S   AEH  P LI    +   +L +EL+
Sbjct  67   RPRARRLLQDAQQIELGLHEQHLISGRFRLCSSQTAAEHLLPELISKIDTDFPELRIELT  126

Query  125  VHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPM  184
            V  T    E + +   D  I          D  ++   +L   ++ V +P+ P A    +
Sbjct  127  VENTENVVEGLLNYEYDFGIIEGR----NDDSRLYQEQWLDDHLVVVASPHHPYAKQTNI  182

Query  185  P-ALLRHQQWMLGPS-AGS---VDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA  239
              A L   +W+L    AG+    +G I  ++  L + +  + +     + L+ +++ G  
Sbjct  183  SLAQLEQARWVLREQGAGTRRIFEGAIHGVIEKLHVWKEYEHV-----SLLKALVKNGPY  237

Query  240  TLAIGF-AVAKDLAAGRLVHVTGPGLD  265
              ++ F  V K++AAG LV +  P L+
Sbjct  238  LSSLPFLDVEKEVAAGELVILPTPQLN  264


>gi|218549570|ref|YP_002383361.1| DNA-binding transcriptional regulator [Escherichia fergusonii 
ATCC 35469]
 gi|218357111|emb|CAQ89744.1| putative DNA-binding transcriptional regulator [Escherichia fergusonii 
ATCC 35469]
 gi|324114427|gb|EGC08396.1| LysR substrate binding domain-containing protein [Escherichia 
fergusonii B253]
 gi|325497970|gb|EGC95829.1| DNA-binding transcriptional regulator [Escherichia fergusonii 
ECD227]
Length=289

 Score = 75.9 bits (185),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 76/266 (29%), Positives = 122/266 (46%), Gaps = 15/266 (5%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            +T  QL  ++ V++ GS   A+A L LS + VS  +  L  +L   LF R G  L     
Sbjct  3    ITLRQLEVFTEVLKSGSTTQASAMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEH  62

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G  L  RA+ +L    + AIE+ +   G    +RI ASS    +  P +I  +     +L
Sbjct  63   GRLLYPRALALL----ERAIEIEQLFRGDNGAIRIFASSTIGNYILPEVIARYRQDYPEL  118

Query  120  SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP  177
             +ELSV  +    + +    VDI +  GP   + I S+      P+L+ +++   +P+SP
Sbjct  119  PLELSVGNSQEVIQAVLDFRVDIGLIEGPCHSTEIISE------PWLEDELVVFASPSSP  172

Query  178  LAAGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVG  237
            LA G      L +  W+L    GS   EI   L    +P+ Q  +   ++ A++  +R G
Sbjct  173  LAQGPVTLEQLANAPWILR-ERGSGTREIVDYLLLSHLPKFQMAMELGNSEAIKHAVRHG  231

Query  238  -GATLAIGFAVAKDLAAGRLVHVTGP  262
             G +      + + L AG L  V  P
Sbjct  232  LGISCLSRRVIEEQLQAGTLSEVAVP  257


>gi|89055062|ref|YP_510513.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864611|gb|ABD55488.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
Length=292

 Score = 75.5 bits (184),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 50/156 (33%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT  Q+R +  V RLG  R A+  L LS   VS  ++ L  EL  PLF R    L  T  
Sbjct  1    MTFEQIRTFLWVARLGGFRKASDRLNLSQPAVSTRISNLEGELQVPLFERGPGQLILTKH  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G +L + A ++L ++++    V  A+    L RI AS   A+   P  +E  S     ++
Sbjct  61   GQQLLAYAEQMLFVEEEIKNRVGNASETEGLFRIGASETIAQAWLPEFLEAVSEAYPRVN  120

Query  121  VELSVHPTSRFRELICSRAVDIA--IGPASESSIGS  154
            V+L+V  +   R+ +  R +D+   +GP SE S+ +
Sbjct  121  VDLTVDISGSLRDALVERRLDLVFLMGPISEFSVKN  156


>gi|92113678|ref|YP_573606.1| LysR family transcriptional regulator [Chromohalobacter salexigens 
DSM 3043]
 gi|91796768|gb|ABE58907.1| transcriptional regulator, LysR family [Chromohalobacter salexigens 
DSM 3043]
Length=324

 Score = 75.1 bits (183),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 85/298 (29%), Positives = 128/298 (43%), Gaps = 26/298 (8%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            +T  QL+ + AV R  S   AA +LGL+   VS  +  L + L+ PLF   G  L   P 
Sbjct  10   LTFRQLQVFQAVHRQQSYSRAAEQLGLTQPAVSAQIRQLEQALEQPLFKYAGKTLHVLPA  69

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
               LA+    I G      +E++E A   R  L +AA S  A++  P ++  F +R  ++
Sbjct  70   ADALAASVQSIFGQVSSLQMELSELAGTIRGELNLAAVST-AQYVVPHILARFRARYPEV  128

Query  120  SVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSP-L  178
             V L V    +  E +  R  D+ I       +  D ++   P L  ++I VV P  P L
Sbjct  129  QVRLRVCNRGQALERLAERRDDLVIM----GMVPEDANLAFMPILDNEMIPVVWPGHPLL  184

Query  179  AAGIP-MPALLRHQQWMLGPSAGS-------VDGEIATMLRGLAIPESQQRIFQSDAAAL  230
             A  P +    R+   M  P +G+       V  E  ++   L +         ++ A  
Sbjct  185  TADAPTLEDFTRYYVLMREPGSGTRTAFEDFVARERVSLRHTLEL--------GTNEAIK  236

Query  231  EEVMRVGGATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPA-VSEL  287
            + VM   G  +    AV  +LA+G L   T PG      WC  T+ P  R P  V+EL
Sbjct  237  QGVMAHLGVAVLPRLAVQLELASGLLASPTLPGFPLRRSWC--TVHPKDRYPTPVTEL  292


>gi|30468080|ref|NP_848967.1| lysR-like transcriptional regulator [Cyanidioschyzon merolae 
strain 10D]
 gi|75328380|sp|Q85G62.1|RBCR_CYAME RecName: Full=Probable RuBisCO transcriptional regulator
 gi|30409180|dbj|BAC76129.1| lysR-like transcriptional regulator [Cyanidioschyzon merolae 
strain 10D]
Length=303

 Score = 74.3 bits (181),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 57/181 (32%), Positives = 87/181 (49%), Gaps = 4/181 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  QLR + A+V  GS + AA  L +S   VS+ +  L ++L+ PLF R+      T  
Sbjct  6    FTLDQLRIFQAIVVEGSFQKAAQSLYISQPAVSLQIQNLEQQLNAPLFDRSHRKAKLTEA  65

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G      A  IL L ++T   + +  H +   L I AS     +  PGLI LF  +   +
Sbjct  66   GQVFFKYASRILALCEETCRALEDLHHLQAGSLIIGASQTIGTYLMPGLIGLFRQKYPHI  125

Query  120  SVELSVHPTSRFRELICSRAVDIA-IGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPL  178
             V+L VH T R    +    +D+A IG A  + +    SI  +PF + ++  +V P+ P 
Sbjct  126  CVQLQVHSTRRIAWSVAKGHIDVAVIGGAIPTELIPLLSI--QPFAEDELTLIVPPDHPF  183

Query  179  A  179
            A
Sbjct  184  A  184


>gi|149912765|ref|ZP_01901299.1| transcriptional regulator, LysR family protein [Roseobacter sp. 
AzwK-3b]
 gi|149813171|gb|EDM72997.1| transcriptional regulator, LysR family protein [Roseobacter sp. 
AzwK-3b]
Length=292

 Score = 74.3 bits (181),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 48/156 (31%), Positives = 76/156 (49%), Gaps = 2/156 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            MT  Q++ +  V RLG  R AA  L LS   +S  +A L +EL  PLF R    L  T  
Sbjct  1    MTFDQIKTFLWVARLGGFRRAAERLNLSQPAISTRIAKLEQELRVPLFERGMGELVLTKH  60

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G  L S   ++L ++++    V   +    L R+ AS   A+   P  ++  S     ++
Sbjct  61   GTLLLSYVEQMLFVEEEIKQRVANPSETEGLFRVGASETIAQAWLPDFLKALSEHYPRVN  120

Query  121  VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS  154
            V+L+V  +   R  +  R +D+A+  GP SE S+ +
Sbjct  121  VDLTVDISLNLRSSLLERKLDLALLMGPVSEFSVEN  156


>gi|282897455|ref|ZP_06305457.1| Transcriptional Regulator, LysR family [Raphidiopsis brookii 
D9]
 gi|281198107|gb|EFA73001.1| Transcriptional Regulator, LysR family [Raphidiopsis brookii 
D9]
Length=339

 Score = 74.3 bits (181),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 53/146 (37%), Positives = 75/146 (52%), Gaps = 3/146 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  QLR   A+ + GS + AA  L +S   VS+ V  L ++LD PLF R G     T  
Sbjct  6    FTLDQLRILKAIAQEGSFKRAAESLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA  65

Query  61   GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD  118
            G  L S   +ILGL Q+T  AIE  +   G  L+ + AS     +  P +I +F  +  D
Sbjct  66   GHLLLSYGEKILGLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRQKYPD  124

Query  119  LSVELSVHPTSRFRELICSRAVDIAI  144
            ++V+L VH T R    + +  VD+AI
Sbjct  125  VAVQLHVHSTRRTAWSVANGQVDLAI  150


>gi|159045691|ref|YP_001534485.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157913451|gb|ABV94884.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length=302

 Score = 73.6 bits (179),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 55/156 (36%), Positives = 75/156 (49%), Gaps = 2/156 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  Q+R + AVVRLGS+  AAA  GL+   V+  +  L   L   LF RT  GL  T  
Sbjct  8    FTIEQIRTFLAVVRLGSLHRAAAAAGLTQPAVTARIKNLEHALSCALFERTSGGLKLTKR  67

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS  120
            G  L + A +   L +    +V + A     LRI AS   A    P L+         L 
Sbjct  68   GELLVAHAEKFEHLVELVQRDVVDPAGLEGRLRIGASETVAACWLPELVSRLHGAYPKLE  127

Query  121  VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS  154
            +EL V  +S  RE + +R +D+AI  GP SE S+ +
Sbjct  128  IELKVDVSSDLREALINREIDLAILLGPISEYSVDN  163


>gi|335041952|ref|ZP_08534979.1| transcriptional regulator [Methylophaga aminisulfidivorans MP]
 gi|333788566|gb|EGL54448.1| transcriptional regulator [Methylophaga aminisulfidivorans MP]
Length=310

 Score = 73.6 bits (179),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 76/267 (29%), Positives = 109/267 (41%), Gaps = 16/267 (5%)

Query  5    QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL  64
            QL  + AV R GSV  AA  + LS +  S  +A   K+ +  LF R G  L     G +L
Sbjct  7    QLEIFVAVSRTGSVSKAAQAVFLSQSAASTALAEFEKQYNVQLFDRVGKSLRINQAGQQL  66

Query  65   ASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELS  124
               AVE+L   Q+    + E   G  L++I A+     + A  L+  F    DD  +EL 
Sbjct  67   LPHAVELLDRAQEIH-NLMEGHAGYGLMKIGATLTIGNYLATLLVAEFLHEHDDSRIELQ  125

Query  125  VHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA--GI  182
            VH T    E I +  +D+ +             I +  ++  +++   AP  PLA    +
Sbjct  126  VHNTKTIIEQIANHELDLGLIEGG----CHHPDIEVETWIADELVVFCAPQHPLATKKKV  181

Query  183  PMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLA  242
             M  LL  + W+L        G   T  R      SQ  I + +    E V R   + L 
Sbjct  182  TMQQLLA-EPWILREKGS---GTRETFDRAFHNYHSQLNI-RLELEHTEAVKRTVESGLG  236

Query  243  IG----FAVAKDLAAGRLVHVTGPGLD  265
            IG     A+      G LV V  P LD
Sbjct  237  IGCISRLALKDAFRRGSLVPVNTPALD  263


>gi|312878800|ref|ZP_07738600.1| transcriptional regulator, LysR family [Aminomonas paucivorans 
DSM 12260]
 gi|310782091|gb|EFQ22489.1| transcriptional regulator, LysR family [Aminomonas paucivorans 
DSM 12260]
Length=309

 Score = 73.6 bits (179),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 71/263 (27%), Positives = 111/263 (43%), Gaps = 11/263 (4%)

Query  5    QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL  64
             LR+++  VRL     AA  LG + + ++ H+ AL  EL   LF R G  +  TP G +L
Sbjct  5    NLRSFAVAVRLERFARAAETLGYTPSTITAHIQALEAELGAFLFFREGGVVRLTPEGEKL  64

Query  65   ASRAVEILGLQQQTAIEVTEAAHGRRL----LRIAASSAFAEHAAPGLIELFSSRADDLS  120
               A +++ L +Q      EA    R+    L + A+    +H   G +E F  R  D+S
Sbjct  65   LPFAEQMVALAEQAG----EAVRSPRVPCGPLLVGAAETLVDHRLGGFLEGFCRRYPDVS  120

Query  121  VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA  180
            + L     + FR  +    +D+A+     S    D  + +    +  +   VAP+ PLA+
Sbjct  121  LSLCYGSCNEFRSALRRGTLDLALLLDRSSE---DPDLEVLDLGEEPLAFAVAPDHPLAS  177

Query  181  GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT  240
            G   P  L  Q  +L  +     G +  +L  L +           A  L+ V   GG T
Sbjct  178  GPLTPPGLEEQTLILTEAGCYYRGHLEGVLEALGVHPRAVLSLGQTAPILQLVRAGGGIT  237

Query  241  LAIGFAVAKDLAAGRLVHVTGPG  263
                 A+A D  AG L  +   G
Sbjct  238  FLPRVALAGDFEAGTLTELAWEG  260


>gi|282899491|ref|ZP_06307457.1| Transcriptional Regulator, LysR family [Cylindrospermopsis raciborskii 
CS-505]
 gi|281195648|gb|EFA70579.1| Transcriptional Regulator, LysR family [Cylindrospermopsis raciborskii 
CS-505]
Length=335

 Score = 73.2 bits (178),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 52/146 (36%), Positives = 75/146 (52%), Gaps = 3/146 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  QLR   A+ + GS + AA  L +S   VS+ V  L ++LD PLF R G     T  
Sbjct  6    FTLDQLRILKAIAQEGSFKRAAESLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA  65

Query  61   GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD  118
            G  L +   +ILGL Q+T  AIE  +   G  L+ + AS     +  P +I +F  +  D
Sbjct  66   GHLLLNYGEKILGLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRQKYPD  124

Query  119  LSVELSVHPTSRFRELICSRAVDIAI  144
            ++V+L VH T R    + +  VD+AI
Sbjct  125  VAVQLHVHSTRRTAWSVANGQVDLAI  150


>gi|260776746|ref|ZP_05885640.1| transcriptional regulator LysR family [Vibrio coralliilyticus 
ATCC BAA-450]
 gi|260606412|gb|EEX32686.1| transcriptional regulator LysR family [Vibrio coralliilyticus 
ATCC BAA-450]
Length=306

 Score = 73.2 bits (178),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 52/154 (34%), Positives = 73/154 (48%), Gaps = 3/154 (1%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            +T  QLR   A+ + G+   AA +L LS +GVS  +A L KELD  LF R    L   P 
Sbjct  3    ITAKQLRVLKAISQAGTTSLAAEQLNLSQSGVSRMLAQLEKELDLDLFERDRGRLKIKPE  62

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR---LLRIAASSAFAEHAAPGLIELFSSRAD  117
             L L S A+ +L   +Q   + +E   GR+   + +IA    FA+  AP LI+   +   
Sbjct  63   SLNLLSNALHVLEGMEQLQSQASEIKRGRKAKQVFKIAMPYTFAKSLAPKLIKQLVALFP  122

Query  118  DLSVELSVHPTSRFRELICSRAVDIAIGPASESS  151
            D+SVEL         E + S   D+     S  S
Sbjct  123  DVSVELFSSHYQSIEESVYSGQADVGFTRISNHS  156


>gi|170750771|ref|YP_001757031.1| LysR family transcriptional regulator [Methylobacterium radiotolerans 
JCM 2831]
 gi|170657293|gb|ACB26348.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans 
JCM 2831]
Length=300

 Score = 72.8 bits (177),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 52/179 (30%), Positives = 89/179 (50%), Gaps = 13/179 (7%)

Query  6    LRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLA  65
            LR + AV R GS+ AA+A+L ++ + +S  +A L  ELD  LF R   G+  +P G  LA
Sbjct  6    LRYFLAVARTGSIAAASAQLNVAASAISRQIANLEAELDCVLFERRPRGMVPSPAGELLA  65

Query  66   SRAVEILGLQQQTAIEVTE-AAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELS  124
              A ++L   +Q   E+ E     R L+R+A S  F+    P  I  F +    +  E++
Sbjct  66   QHAHQVLIRSEQVVTEIRELEGLARGLIRVACSEGFSLDIVPNAIAAFHADHPGIRFEVT  125

Query  125  VHPTSRFRELICSRAVDI----AIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA  179
            V P ++  + + +   D+    A+ P ++  +  DG +         ++ + AP+ PLA
Sbjct  126  VQPPAQVTQTVAAGDADLGITFALTPTAQVEVLYDGQV--------DMLALAAPDHPLA  176


>gi|254411057|ref|ZP_05024835.1| LysR substrate binding domain protein [Microcoleus chthonoplastes 
PCC 7420]
 gi|196182412|gb|EDX77398.1| LysR substrate binding domain protein [Microcoleus chthonoplastes 
PCC 7420]
Length=338

 Score = 72.8 bits (177),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 54/146 (37%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  QLR   A+   GS + AA  L +S   VS+ V  L ++LD PLF R G     T  
Sbjct  6    FTLDQLRILKAIASEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA  65

Query  61   GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD  118
            G  L S   +IL L Q+T  AIE  +   G  L+ + AS     +  P +I LF  +  D
Sbjct  66   GHLLLSYGEKILTLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGLFRQQYPD  124

Query  119  LSVELSVHPTSRFRELICSRAVDIAI  144
            +SV+L VH T R    + +  VD+AI
Sbjct  125  VSVQLQVHSTRRTSWSVSNGQVDLAI  150


>gi|293410518|ref|ZP_06654094.1| DNA-binding transcriptional regulator [Escherichia coli B354]
 gi|291470986|gb|EFF13470.1| DNA-binding transcriptional regulator [Escherichia coli B354]
Length=293

 Score = 72.8 bits (177),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 76/266 (29%), Positives = 117/266 (44%), Gaps = 15/266 (5%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
            +T  QL  ++ V++ GS   A+  L LS + VS  +  L  +L   LF R G  L     
Sbjct  3    ITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEH  62

Query  61   GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL  119
            G  L  RA+ +L    + AIE+ +        +RI ASS    +  P +I  +      L
Sbjct  63   GRLLYPRALALL----EQAIEIEQLFREDNGAIRIYASSTIGNYILPAVIARYRHDYPQL  118

Query  120  SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP  177
             +ELSV  +    + +    VDI    GP   + I S+      P+L+ +++   APNSP
Sbjct  119  PIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISE------PWLEDELVVFAAPNSP  172

Query  178  LAAGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVG  237
            LA G      L    W+L    GS   EI   L    +P+ +  +   ++ A++  +R G
Sbjct  173  LARGPVTLEQLAAAPWILR-ERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHG  231

Query  238  GATLAIGFAVAKD-LAAGRLVHVTGP  262
                 +   V +D L AG L  V  P
Sbjct  232  LGISCLSRRVIEDQLQAGTLSEVAVP  257


>gi|291567755|dbj|BAI90027.1| LysR family transcriptional regulator [Arthrospira platensis 
NIES-39]
Length=331

 Score = 72.0 bits (175),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 77/277 (28%), Positives = 130/277 (47%), Gaps = 21/277 (7%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  QLR   A+   GS + AA  L +S   VS+ V  L ++L+ PLF R G     T  
Sbjct  6    FTLDQLRILQAIASEGSFKRAADRLYVSQPAVSLQVQNLERQLNVPLFDRGGRRAQLTEA  65

Query  61   GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD  118
            G  L S   ++L L Q+T  AIE  +   G  L+ + AS     +  P +I +F S+  D
Sbjct  66   GHLLLSYGEKVLSLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRSKYPD  124

Query  119  LSVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPL  178
            +SV+L VH T R    + +  +D+AI    E S     S+ + PF + ++  +++ + PL
Sbjct  125  VSVQLHVHSTRRTAWSVVNGQIDLAI-VGGEISPELAQSLEVVPFAEDELALIMSVSHPL  183

Query  179  AAGIPMPALLRHQ-----QWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEV  233
            A       ++ H      Q++   +  ++   I  +L    I  S+ +I + + +++E +
Sbjct  184  AG----QEIIEHDDLYDLQFISLDAQSTIRKVIDQVLSRSGIDTSRLKI-EMELSSIEAI  238

Query  234  MRVGGATLAIGF----AVAKDLAAGRLVHVTGPGLDR  266
                 + L + F    A+ K+L  G L     P +DR
Sbjct  239  KNAVQSGLGVAFVSTSAIEKELQMGVL---QIPKIDR  272


>gi|298489729|ref|YP_003719906.1| LysR family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298231647|gb|ADI62783.1| transcriptional regulator, LysR family ['Nostoc azollae' 0708]
Length=337

 Score = 71.6 bits (174),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 52/146 (36%), Positives = 74/146 (51%), Gaps = 3/146 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  QLR   A+ + GS + AA  L +S   VS+ V  L ++LD PLF R G     T  
Sbjct  6    FTLDQLRILKAIAQEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA  65

Query  61   GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD  118
            G  L S   +IL L Q+T  AIE  +   G  L+ + AS     +  P +I +F  +  D
Sbjct  66   GHLLLSYGEKILSLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRQKYPD  124

Query  119  LSVELSVHPTSRFRELICSRAVDIAI  144
            ++V+L VH T R    + +  VD+AI
Sbjct  125  VAVQLHVHSTRRTAWSVANGQVDLAI  150


>gi|255033957|ref|YP_003084578.1| LysR family transcriptional regulator [Dyadobacter fermentans 
DSM 18053]
 gi|254946713|gb|ACT91413.1| transcriptional regulator, LysR family [Dyadobacter fermentans 
DSM 18053]
Length=297

 Score = 71.6 bits (174),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 75/292 (26%), Positives = 134/292 (46%), Gaps = 19/292 (6%)

Query  5    QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL  64
            +L+ +  V R  S   AAAEL ++   V+ H+  L  +L   LF R+GA ++ TP G  L
Sbjct  6    RLQVFQTVARRLSFTKAAAELFITQPAVTKHIHELESQLKTKLFERSGARISLTPAGDIL  65

Query  65   ASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDLSVEL  123
               A +I  + +    E+   +      LR+ AS+  A++  P ++  F  +  ++ V L
Sbjct  66   LHHAEQIFDIYRNLEFEINSLSQRNSGKLRLGASTTAAQYILPPILAAFHRKFHNIEVTL  125

Query  124  SVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA-GI  182
            +   T      +  + +D+ +          + +I    FL  +I+ V    +PLAA G+
Sbjct  126  TTKNTEEIEHALQHKEIDLGVIEG----YSKNAAIKYTEFLNDEIVLVANSKNPLAATGV  181

Query  183  PMPALLRHQQWML-GPSAGSVDGEIATMLR----GLAIPESQQRIFQSDAAALEEVMRVG  237
                 LR    +L  P +G+++  IA  L+    GL     + ++  S++  L  +    
Sbjct  182  VDAGQLRQIPLLLREPGSGTLEV-IAHALKSIGLGLGDLNVEMQLSSSESMKLYILHSDS  240

Query  238  GATLAIGFAVAKDLAAG--RLVHVTGPGLDRAGEWCVATLAPSARQPAVSEL  287
             A +++  AV K+L +   R+V V G  +DR   +   TL    +Q A+ EL
Sbjct  241  MAFISVH-AVLKELQSKECRIVDVEGLSIDR--HFHFTTL--HGQQEALPEL  287


>gi|209526768|ref|ZP_03275290.1| transcriptional regulator, LysR family [Arthrospira maxima CS-328]
 gi|209492812|gb|EDZ93145.1| transcriptional regulator, LysR family [Arthrospira maxima CS-328]
Length=312

 Score = 71.2 bits (173),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 50/146 (35%), Positives = 74/146 (51%), Gaps = 3/146 (2%)

Query  1    MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG  60
             T  QLR   A+   GS + AA  L +S   +S+ V  L ++L+ PLF R G     T  
Sbjct  6    FTLDQLRILKAIASEGSFKRAADSLYVSQPAISLQVQNLERQLNVPLFDRAGRRAKLTEA  65

Query  61   GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD  118
            G  L S   +IL L Q+T  AIE  +   G  L+ + AS     +  PG+I +F  +  D
Sbjct  66   GHLLISYGEKILSLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPGMIGMFRQKYPD  124

Query  119  LSVELSVHPTSRFRELICSRAVDIAI  144
            ++V+L VH T R    + +  +D+AI
Sbjct  125  VAVQLHVHSTRRTAWSVANGQIDLAI  150



Lambda     K      H
   0.321    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 564737661852




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40