BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0377
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607518|ref|NP_214891.1| LysR family transcriptional regulat... 633 9e-180
gi|339293433|gb|AEJ45544.1| LysR family transcriptional regulato... 631 4e-179
gi|31791554|ref|NP_854047.1| LysR family transcriptional regulat... 630 1e-178
gi|183980678|ref|YP_001848969.1| LysR family transcriptional reg... 592 3e-167
gi|240172153|ref|ZP_04750812.1| LysR family transcriptional regu... 578 3e-163
gi|296167822|ref|ZP_06850007.1| LysR family transcriptional regu... 571 4e-161
gi|289748862|ref|ZP_06508240.1| transcriptional regulator, lysR-... 570 8e-161
gi|118616017|ref|YP_904349.1| LysR family transcriptional regula... 563 2e-158
gi|119866552|ref|YP_936504.1| LysR family transcriptional regula... 479 3e-133
gi|118472923|ref|YP_885148.1| transcriptional regulatory protein... 479 3e-133
gi|281191482|gb|ADA57151.1| LysR family transcriptional regulato... 475 5e-132
gi|108797467|ref|YP_637664.1| LysR family transcriptional regula... 446 3e-123
gi|312140403|ref|YP_004007739.1| lysr family transcriptional reg... 406 2e-111
gi|325675987|ref|ZP_08155670.1| LysR family transcriptional regu... 388 7e-106
gi|119714493|ref|YP_921458.1| substrate-binding protein LysR [No... 331 8e-89
gi|302866396|ref|YP_003835033.1| LysR substrate-binding protein ... 315 9e-84
gi|315502807|ref|YP_004081694.1| LysR family transcriptional reg... 314 1e-83
gi|116670589|ref|YP_831522.1| LysR family transcriptional regula... 179 7e-43
gi|284044478|ref|YP_003394818.1| LysR family transcriptional reg... 161 1e-37
gi|331696456|ref|YP_004332695.1| LysR family transcriptional reg... 138 1e-30
gi|85705471|ref|ZP_01036569.1| transcriptional regulator, LysR f... 89.4 8e-16
gi|297530416|ref|YP_003671691.1| LysR family transcriptional reg... 88.2 2e-15
gi|56419943|ref|YP_147261.1| LysR family transcriptional regulat... 83.6 4e-14
gi|325001695|ref|ZP_08122807.1| LysR family transcriptional regu... 82.0 1e-13
gi|78043535|ref|YP_359484.1| LysR family transcriptional regulat... 81.3 2e-13
gi|261419611|ref|YP_003253293.1| LysR family transcriptional reg... 80.5 4e-13
gi|339502470|ref|YP_004689890.1| HTH-type LysR family transcript... 80.5 4e-13
gi|138894930|ref|YP_001125383.1| LysR family transcriptional reg... 79.7 6e-13
gi|297568142|ref|YP_003689486.1| transcriptional regulator, LysR... 79.7 6e-13
gi|254503417|ref|ZP_05115568.1| LysR substrate binding domain pr... 79.3 7e-13
gi|254462106|ref|ZP_05075522.1| transcriptional regulator, LysR ... 77.8 2e-12
gi|127513315|ref|YP_001094512.1| LysR family transcriptional reg... 77.4 3e-12
gi|218549570|ref|YP_002383361.1| DNA-binding transcriptional reg... 75.9 8e-12
gi|89055062|ref|YP_510513.1| LysR family transcriptional regulat... 75.5 1e-11
gi|92113678|ref|YP_573606.1| LysR family transcriptional regulat... 75.1 1e-11
gi|30468080|ref|NP_848967.1| lysR-like transcriptional regulator... 74.3 2e-11
gi|149912765|ref|ZP_01901299.1| transcriptional regulator, LysR ... 74.3 2e-11
gi|282897455|ref|ZP_06305457.1| Transcriptional Regulator, LysR ... 74.3 3e-11
gi|159045691|ref|YP_001534485.1| transcriptional regulator [Dino... 73.6 4e-11
gi|335041952|ref|ZP_08534979.1| transcriptional regulator [Methy... 73.6 4e-11
gi|312878800|ref|ZP_07738600.1| transcriptional regulator, LysR ... 73.6 4e-11
gi|282899491|ref|ZP_06307457.1| Transcriptional Regulator, LysR ... 73.2 5e-11
gi|260776746|ref|ZP_05885640.1| transcriptional regulator LysR f... 73.2 6e-11
gi|170750771|ref|YP_001757031.1| LysR family transcriptional reg... 72.8 7e-11
gi|254411057|ref|ZP_05024835.1| LysR substrate binding domain pr... 72.8 7e-11
gi|293410518|ref|ZP_06654094.1| DNA-binding transcriptional regu... 72.8 7e-11
gi|291567755|dbj|BAI90027.1| LysR family transcriptional regulat... 72.0 1e-10
gi|298489729|ref|YP_003719906.1| LysR family transcriptional reg... 71.6 1e-10
gi|255033957|ref|YP_003084578.1| LysR family transcriptional reg... 71.6 2e-10
gi|209526768|ref|ZP_03275290.1| transcriptional regulator, LysR ... 71.2 2e-10
>gi|15607518|ref|NP_214891.1| LysR family transcriptional regulator [Mycobacterium tuberculosis
H37Rv]
gi|15839762|ref|NP_334799.1| LysR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|148660143|ref|YP_001281666.1| LysR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
48 more sequence titles
Length=321
Score = 633 bits (1633), Expect = 9e-180, Method: Compositional matrix adjust.
Identities = 321/321 (100%), Positives = 321/321 (100%), Gaps = 0/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM
Sbjct 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
IPGSGVGVTRFRPKVHVTLWS
Sbjct 301 IPGSGVGVTRFRPKVHVTLWS 321
>gi|339293433|gb|AEJ45544.1| LysR family transcriptional regulator [Mycobacterium tuberculosis
CCDC5079]
Length=321
Score = 631 bits (1628), Expect = 4e-179, Method: Compositional matrix adjust.
Identities = 320/321 (99%), Positives = 320/321 (99%), Gaps = 0/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVG ISTPRCIQAM
Sbjct 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGLISTPRCIQAM 300
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
IPGSGVGVTRFRPKVHVTLWS
Sbjct 301 IPGSGVGVTRFRPKVHVTLWS 321
>gi|31791554|ref|NP_854047.1| LysR family transcriptional regulator [Mycobacterium bovis AF2122/97]
gi|121636290|ref|YP_976513.1| LysR family transcriptional regulator [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224988762|ref|YP_002643449.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
18 more sequence titles
Length=321
Score = 630 bits (1624), Expect = 1e-178, Method: Compositional matrix adjust.
Identities = 320/321 (99%), Positives = 320/321 (99%), Gaps = 0/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM
Sbjct 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
I GSGVGVTRFRPKVHVTLWS
Sbjct 301 IRGSGVGVTRFRPKVHVTLWS 321
>gi|183980678|ref|YP_001848969.1| LysR family transcriptional regulator [Mycobacterium marinum
M]
gi|183174004|gb|ACC39114.1| transcriptional regulatory protein (probably LysR-family) [Mycobacterium
marinum M]
Length=321
Score = 592 bits (1525), Expect = 3e-167, Method: Compositional matrix adjust.
Identities = 299/321 (94%), Positives = 307/321 (96%), Gaps = 0/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAA ELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAATELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASS FAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSTFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTS+FR+LICSRAVDIAIGPASESSIGSD S+F+RPFLKYQIITVVAPNSPLA
Sbjct 121 VELSVHPTSQFRDLICSRAVDIAIGPASESSIGSDTSLFVRPFLKYQIITVVAPNSPLAV 180
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
GIP P+LLR QQWMLGP AGSV GEIATMLR LAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct 181 GIPTPSLLRQQQWMLGPPAGSVAGEIATMLRDLAIPESQQRIFQSDAAALEEVMRVGGAT 240
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
L IGFAVAKDLAAGRLVHVT PGLD+AGEWCVATL P+ARQPAVSELV FI+TPRCIQAM
Sbjct 241 LTIGFAVAKDLAAGRLVHVTSPGLDKAGEWCVATLPPAARQPAVSELVRFITTPRCIQAM 300
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
I GSGVGVTRFRPKVHVTLWS
Sbjct 301 IRGSGVGVTRFRPKVHVTLWS 321
>gi|240172153|ref|ZP_04750812.1| LysR family transcriptional regulator [Mycobacterium kansasii
ATCC 12478]
Length=321
Score = 578 bits (1491), Expect = 3e-163, Method: Compositional matrix adjust.
Identities = 293/321 (92%), Positives = 301/321 (94%), Gaps = 0/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMH+AALRKELDD LFTRTGAGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHIAALRKELDDQLFTRTGAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASS FAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSTFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTSRFR+LI SRAVDIAIGPASES G DGS+F+RPFLKYQIITVVAPNSPLA
Sbjct 121 VELSVHPTSRFRDLILSRAVDIAIGPASESCHGVDGSLFVRPFLKYQIITVVAPNSPLAV 180
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
GIP P LLR QQWMLGPSAGSVDGEIATMLR LAIPES QRIFQSDAAALEE+ RVGG T
Sbjct 181 GIPTPGLLRQQQWMLGPSAGSVDGEIATMLRDLAIPESHQRIFQSDAAALEEIRRVGGVT 240
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
L IGFAVAKDLAAGRLVHVTGPGLDR+GEWC +TLAPSARQPAVSELV FI+TPRC QAM
Sbjct 241 LTIGFAVAKDLAAGRLVHVTGPGLDRSGEWCASTLAPSARQPAVSELVRFITTPRCTQAM 300
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
I GSGVGV RFRPKVHVTLWS
Sbjct 301 IRGSGVGVARFRPKVHVTLWS 321
>gi|296167822|ref|ZP_06850007.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897020|gb|EFG76641.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=321
Score = 571 bits (1472), Expect = 4e-161, Method: Compositional matrix adjust.
Identities = 288/321 (90%), Positives = 299/321 (94%), Gaps = 0/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAAAELG+SDAGVSM VAALRKELDDPLFTRTGAGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAAAELGVSDAGVSMLVAALRKELDDPLFTRTGAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAAS+ FAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASTTFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTSRFR+LICSRAVDIAIGPA E SIG D ++F+RPFLKYQII V APNSP+A
Sbjct 121 VELSVHPTSRFRDLICSRAVDIAIGPAGEGSIGPDDALFVRPFLKYQIIAVAAPNSPVAL 180
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
G+P PALLR QQWMLGPSAG VDGEIATMLR LAIPESQQRIFQSDAAALEEV RVGG T
Sbjct 181 GVPTPALLRQQQWMLGPSAGGVDGEIATMLRDLAIPESQQRIFQSDAAALEEVQRVGGVT 240
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
L IGFAVAKDLAAGRL HV GPGLDR+GEWC ATLAP+ARQPAVSELV FI+TPRC QAM
Sbjct 241 LTIGFAVAKDLAAGRLTHVHGPGLDRSGEWCAATLAPAARQPAVSELVRFITTPRCTQAM 300
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
I GSGVGVTRFRPKVHVTLWS
Sbjct 301 IRGSGVGVTRFRPKVHVTLWS 321
>gi|289748862|ref|ZP_06508240.1| transcriptional regulator, lysR-family [Mycobacterium tuberculosis
T92]
gi|289689449|gb|EFD56878.1| transcriptional regulator, lysR-family [Mycobacterium tuberculosis
T92]
Length=300
Score = 570 bits (1470), Expect = 8e-161, Method: Compositional matrix adjust.
Identities = 292/297 (99%), Positives = 293/297 (99%), Gaps = 0/297 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA
Sbjct 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT
Sbjct 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCI 297
LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGF PR +
Sbjct 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFHQHPRGV 297
>gi|118616017|ref|YP_904349.1| LysR family transcriptional regulator [Mycobacterium ulcerans
Agy99]
gi|118568127|gb|ABL02878.1| transcriptional regulatory protein (probably LysR-family) [Mycobacterium
ulcerans Agy99]
Length=310
Score = 563 bits (1450), Expect = 2e-158, Method: Compositional matrix adjust.
Identities = 284/310 (92%), Positives = 295/310 (96%), Gaps = 0/310 (0%)
Query 12 VVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASRAVEI 71
+VRLGSVRAAA ELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLAS AVEI
Sbjct 1 MVRLGSVRAAATELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASGAVEI 60
Query 72 LGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELSVHPTSRF 131
LGLQQQTAIEVTEAAHGRRLLRIAASS FAEHAAPGLIELFSSRADDLSVELSVHPTS+F
Sbjct 61 LGLQQQTAIEVTEAAHGRRLLRIAASSTFAEHAAPGLIELFSSRADDLSVELSVHPTSQF 120
Query 132 RELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPMPALLRHQ 191
R+LIC+RAVDIAIGPASESSIGSD S+F+RPFLKYQIITVVAPNSPLA GIP P+LLR Q
Sbjct 121 RDLICARAVDIAIGPASESSIGSDTSLFVRPFLKYQIITVVAPNSPLAVGIPTPSLLRQQ 180
Query 192 QWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLAIGFAVAKDL 251
QWMLGP AGSV GEIATMLR LAIPESQQRIFQSDAAALEEVMRVGGATL IGFAVAKDL
Sbjct 181 QWMLGPPAGSVAGEIATMLRDLAIPESQQRIFQSDAAALEEVMRVGGATLTIGFAVAKDL 240
Query 252 AAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAMIPGSGVGVTRF 311
AAGRLVHVT PGLD+AGEWCVATL P+ARQPAVSELV FI+TPRCIQAMI GSGVGVTRF
Sbjct 241 AAGRLVHVTSPGLDKAGEWCVATLPPAARQPAVSELVRFITTPRCIQAMIRGSGVGVTRF 300
Query 312 RPKVHVTLWS 321
RPK+HVTLWS
Sbjct 301 RPKMHVTLWS 310
>gi|119866552|ref|YP_936504.1| LysR family transcriptional regulator [Mycobacterium sp. KMS]
gi|126433088|ref|YP_001068779.1| LysR family transcriptional regulator [Mycobacterium sp. JLS]
gi|119692641|gb|ABL89714.1| transcriptional regulator, LysR family [Mycobacterium sp. KMS]
gi|126232888|gb|ABN96288.1| transcriptional regulator, LysR family [Mycobacterium sp. JLS]
Length=318
Score = 479 bits (1232), Expect = 3e-133, Method: Compositional matrix adjust.
Identities = 241/321 (76%), Positives = 272/321 (85%), Gaps = 3/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAA ELG+SDAG+SMHV LRKELDDPLF+RT AGLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAAEELGMSDAGISMHVTQLRKELDDPLFSRTSAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRA+EILGLQQQTAIEVTEAAHGRRLLRIAAS+ FAEHAAPGLIELFS+RADDL+
Sbjct 61 GLRLASRAIEILGLQQQTAIEVTEAAHGRRLLRIAASTMFAEHAAPGLIELFSARADDLT 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHPTSRFR+LI SRAVDI +GPA ++ +RPFLKYQIITV AP +
Sbjct 121 VELSVHPTSRFRDLIESRAVDITLGPAPAD---PGPALVVRPFLKYQIITVAAPETAAGP 177
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
G+ PA LR WMLGPSAG VDGE+ATMLR L+IPES+QRIFQS+AAALEEV R GG T
Sbjct 178 GMQAPAQLREHDWMLGPSAGGVDGEVATMLRNLSIPESRQRIFQSEAAALEEVQRAGGVT 237
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
L +GFAV++DL++ RLV + G GL +GEW +TL P+AR PA SEL+ FI+TPRC QAM
Sbjct 238 LTLGFAVSRDLSSRRLVQIKGAGLQTSGEWFASTLTPAARPPASSELMRFITTPRCTQAM 297
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
I G+GVGVTRF+PKVHVTLWS
Sbjct 298 IRGTGVGVTRFKPKVHVTLWS 318
>gi|118472923|ref|YP_885148.1| transcriptional regulatory protein [Mycobacterium smegmatis str.
MC2 155]
gi|118174210|gb|ABK75106.1| probable transcriptional regulatory protein [Mycobacterium smegmatis
str. MC2 155]
Length=317
Score = 479 bits (1232), Expect = 3e-133, Method: Compositional matrix adjust.
Identities = 251/321 (79%), Positives = 269/321 (84%), Gaps = 4/321 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRA+SAVVRLGSVRAAA ELG+SDAGVSMHVA LRKELDDPLFTRT +GLAFTPG
Sbjct 1 MTPAQLRAFSAVVRLGSVRAAAEELGVSDAGVSMHVAQLRKELDDPLFTRTASGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHP +F LI SRAVDIA+GPA+ +D ++ +R FLKYQIITV P++ L
Sbjct 121 VELSVHPARQFGHLITSRAVDIALGPAAP----ADPNLVVRAFLKYQIITVTTPDNALLE 176
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
PA LR Q W LGPS G+ DGEIA MLR LAIPE++QRIFQSDAAALEEV RVGG T
Sbjct 177 RGVTPASLREQPWQLGPSGGNADGEIAAMLRALAIPEARQRIFQSDAAALEEVRRVGGVT 236
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
IGFAVAKDLA GRL V GPGL GEW TL SARQPAVSEL+ FI+TPRC QAM
Sbjct 237 PTIGFAVAKDLAGGRLAQVKGPGLQVGGEWFATTLPASARQPAVSELLRFITTPRCTQAM 296
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
I GSGVGV+RFRPKVHVTLWS
Sbjct 297 IRGSGVGVSRFRPKVHVTLWS 317
>gi|281191482|gb|ADA57151.1| LysR family transcriptional regulator [Mycobacterium sp. DSM
3803]
Length=320
Score = 475 bits (1222), Expect = 5e-132, Method: Compositional matrix adjust.
Identities = 238/322 (74%), Positives = 271/322 (85%), Gaps = 3/322 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRA+++VVRLGSVRAAA ELG+SDAG+SMHVA LRKELDDPLF+RT +GLAFTPG
Sbjct 1 MTPAQLRAFASVVRLGSVRAAAEELGMSDAGISMHVAQLRKELDDPLFSRTSSGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTAIEV EA+ GRRLLRIAASS FAEHAAPGLIELFSSRA DLS
Sbjct 61 GLRLASRAVEILGLQQQTAIEVNEASRGRRLLRIAASSGFAEHAAPGLIELFSSRAKDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVH RF++L+ SRAVDIA+GP + D SI +RPFL+Y ++TV AP +P A
Sbjct 121 VELSVHSPGRFKDLVVSRAVDIALGPVAGPI--DDESITVRPFLQYHVLTVAAPGNPAAT 178
Query 181 GIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA 239
+P P +LLR QQWMLGPSA +VDGEI ++LR LAIPE++QRIFQ+DAAALEE+ R
Sbjct 179 SVPAPLSLLREQQWMLGPSASNVDGEIGSVLRALAIPEARQRIFQNDAAALEELQRAKAV 238
Query 240 TLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQA 299
TLAIG VAKDL AGRLVHV GPGL GEWC TL P+ARQPAVSELV FI+TPRC QA
Sbjct 239 TLAIGITVAKDLEAGRLVHVKGPGLQTPGEWCAMTLTPAARQPAVSELVRFITTPRCTQA 298
Query 300 MIPGSGVGVTRFRPKVHVTLWS 321
M+ G+GVGV RF+PK+HVTLWS
Sbjct 299 MLRGTGVGVRRFKPKIHVTLWS 320
>gi|108797467|ref|YP_637664.1| LysR family transcriptional regulator [Mycobacterium sp. MCS]
gi|108767886|gb|ABG06608.1| transcriptional regulator, LysR family [Mycobacterium sp. MCS]
Length=301
Score = 446 bits (1146), Expect = 3e-123, Method: Compositional matrix adjust.
Identities = 223/304 (74%), Positives = 255/304 (84%), Gaps = 3/304 (0%)
Query 18 VRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASRAVEILGLQQQ 77
+RAAA ELG+SDAG+SMHV LRKELDDPLF+RT AGLAFTPGGLRLASRA+EILGLQQQ
Sbjct 1 MRAAAEELGMSDAGISMHVTQLRKELDDPLFSRTSAGLAFTPGGLRLASRAIEILGLQQQ 60
Query 78 TAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELSVHPTSRFRELICS 137
TAIEVTEAAHGRRLLRIAAS+ FAEHAAPGLIELFS+RADDL+VELSVHPTSRFR+LI S
Sbjct 61 TAIEVTEAAHGRRLLRIAASTMFAEHAAPGLIELFSARADDLTVELSVHPTSRFRDLIES 120
Query 138 RAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPMPALLRHQQWMLGP 197
RAVDI +GPA ++ +RPFLKYQIITV AP + G+ PA LR WMLGP
Sbjct 121 RAVDITLGPAPADP---GPALVVRPFLKYQIITVAAPETAAGPGMQAPAQLREHDWMLGP 177
Query 198 SAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLAIGFAVAKDLAAGRLV 257
SAG VDGE+ATMLR L+IPES+QRIFQS+AAALEEV R GG TL +GFAV++DL++ RLV
Sbjct 178 SAGGVDGEVATMLRNLSIPESRQRIFQSEAAALEEVQRAGGVTLTLGFAVSRDLSSRRLV 237
Query 258 HVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAMIPGSGVGVTRFRPKVHV 317
+ G GL +GEW +TL P+AR PA SEL+ FI+TPRC QAMI G+GVGVTRF+PKVHV
Sbjct 238 QIKGAGLQTSGEWFASTLTPAARPPASSELMRFITTPRCTQAMIRGTGVGVTRFKPKVHV 297
Query 318 TLWS 321
TLWS
Sbjct 298 TLWS 301
>gi|312140403|ref|YP_004007739.1| lysr family transcriptional regulator [Rhodococcus equi 103S]
gi|311889742|emb|CBH49059.1| putative LysR family transcriptional regulator [Rhodococcus equi
103S]
Length=318
Score = 406 bits (1044), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 210/321 (66%), Positives = 244/321 (77%), Gaps = 3/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTPAQLRAYSAVVRLGSVRAAA ELG++D+GVSMH+A LRKELDDPL+ R +GLAFTPG
Sbjct 1 MTPAQLRAYSAVVRLGSVRAAARELGMTDSGVSMHIAQLRKELDDPLYCRRPSGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVEILGLQQQTA+EV++A +GRRLLRIAAS FAEHAAPGLI+LF+ RA DLS
Sbjct 61 GLRLASRAVEILGLQQQTALEVSQAGNGRRLLRIAASPLFAEHAAPGLIDLFAGRAKDLS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVHP +F LI SRAVD+A+GP +G + L PFL+Y+++TV AP P+A
Sbjct 121 VELSVHPVRQFANLISSRAVDVALGP---RVLGERQPLCLHPFLQYEVLTVCAPQHPMAR 177
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
P LR QQW LGPSA DG + MLR L IP +QRIFQSDAAA+E V R T
Sbjct 178 TRPSLRQLREQQWFLGPSAAGGDGVMRHMLRALDIPHERQRIFQSDAAAVEAVRRSSALT 237
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
LA+GFA+ +L+ G L V GP L AGEWC TL QPA +EL+ F+STPRCIQAM
Sbjct 238 LALGFAIDDELSGGSLDLVEGPELRAAGEWCATTLHHQHLQPAATELLHFVSTPRCIQAM 297
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
I G+GV V F+PKVHVTLWS
Sbjct 298 IRGTGVDVAHFKPKVHVTLWS 318
>gi|325675987|ref|ZP_08155670.1| LysR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325553225|gb|EGD22904.1| LysR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=307
Score = 388 bits (996), Expect = 7e-106, Method: Compositional matrix adjust.
Identities = 200/310 (65%), Positives = 235/310 (76%), Gaps = 3/310 (0%)
Query 12 VVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLASRAVEI 71
+VRLGSVRAAA ELG++D+GVSMH+A LRKELDDPL+ R +GLAFTPGGLRLASRAVEI
Sbjct 1 MVRLGSVRAAARELGMTDSGVSMHIAQLRKELDDPLYCRRPSGLAFTPGGLRLASRAVEI 60
Query 72 LGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELSVHPTSRF 131
LGLQQQTA+EV++A +GRRLLRIAAS FAEHAAPGLI+LF+ RA DLSVELSVHP +F
Sbjct 61 LGLQQQTALEVSQAGNGRRLLRIAASPLFAEHAAPGLIDLFAGRAKDLSVELSVHPVRQF 120
Query 132 RELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPMPALLRHQ 191
LI SRAVD+A+GP +G + L PFL+Y+++TV AP P+A P LR Q
Sbjct 121 ANLISSRAVDVALGP---RVLGERQPLCLHPFLQYEVLTVCAPQHPMARTRPSLRQLREQ 177
Query 192 QWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLAIGFAVAKDL 251
QW LGPSA DG + MLR L IP +QRIFQSDAAA+E V R TLA+GFA+ +L
Sbjct 178 QWFLGPSAAGGDGVMRHMLRALDIPHERQRIFQSDAAAVEAVRRSSALTLALGFAIDDEL 237
Query 252 AAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAMIPGSGVGVTRF 311
+AG L V GP L AGEWC TL QPA +EL+ F+STPRCIQAMI G+GV VT F
Sbjct 238 SAGSLDLVEGPELRAAGEWCATTLHHQHLQPAATELLHFVSTPRCIQAMIRGTGVDVTHF 297
Query 312 RPKVHVTLWS 321
+PKVHVTLWS
Sbjct 298 KPKVHVTLWS 307
>gi|119714493|ref|YP_921458.1| substrate-binding protein LysR [Nocardioides sp. JS614]
gi|119535154|gb|ABL79771.1| LysR, substrate-binding protein [Nocardioides sp. JS614]
Length=318
Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 176/321 (55%), Positives = 220/321 (69%), Gaps = 3/321 (0%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTP QLRA++ VVRLGSV+AAAAEL +S+A VS+HV LRKEL D LF RT +GLAFTPG
Sbjct 1 MTPTQLRAFATVVRLGSVKAAAAELEVSEAAVSLHVGQLRKELGDQLFNRTASGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRAVE+LGLQ +T +EV EA GRR+LR+ +S FAE+AAPGLI LF+ RA DL
Sbjct 61 GLRLASRAVELLGLQDRTVLEVREAGVGRRMLRLGTTSLFAEYAAPGLIGLFADRARDLD 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
VELSVH F +L+ +R VD +GP + D ++ + FL YQ++ VV P P+
Sbjct 121 VELSVHRARDFEQLLLTRTVDAVVGPRPAT---GDPALISKLFLNYQVLAVVGPEHPVTR 177
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
G P A+LR Q W+LGPSA G I +L+ + +PE +Q+IFQS AAALEE R G T
Sbjct 178 GQPGIAMLRDQTWLLGPSAADDAGVIPGLLQRIGVPEERQQIFQSHAAALEEAKRGRGIT 237
Query 241 LAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQAM 300
LA+ FAVA+DLA G LV V G + G W ++ L PA E+ F++TPR QAM
Sbjct 238 LAVAFAVAQDLATGALVRVPGRPVQGQGSWNISILGGERATPAAEEMARFVTTPRATQAM 297
Query 301 IPGSGVGVTRFRPKVHVTLWS 321
+ G GV RF+P VHVTLWS
Sbjct 298 LRGRGVTHGRFKPAVHVTLWS 318
>gi|302866396|ref|YP_003835033.1| LysR substrate-binding protein [Micromonospora aurantiaca ATCC
27029]
gi|302569255|gb|ADL45457.1| LysR substrate-binding [Micromonospora aurantiaca ATCC 27029]
Length=318
Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 175/322 (55%), Positives = 217/322 (68%), Gaps = 5/322 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTP QLRAY AVVRLGSV+ AAA+L +S++ VS+ +A LR+E D LF+RT AGLAFTPG
Sbjct 1 MTPTQLRAYVAVVRLGSVKQAAAQLEVSESAVSLLIAQLRREFGDQLFSRTAAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRA E+LGLQ +T +EV+ AAHGRR+LR+AASS FAE AAP LIELF+ RA DL
Sbjct 61 GLRLASRAAEMLGLQDRTVLEVSSAAHGRRMLRVAASSEFAEFAAPRLIELFARRAADLD 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
+ELSV F L+ +RA DIA+GP ++ +I RP + Y+++TVV P+ PL A
Sbjct 121 IELSVCDPGSFESLLLTRAADIAMGPLPPV---AEPAISCRPMMNYRLVTVVGPDHPL-A 176
Query 181 GIPM-PALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA 239
G+P P LR Q W+LGPSA + G + MLR L +PE +Q+IFQS AAAL E R G
Sbjct 177 GVPASPGQLRDQTWLLGPSATNTLGAVPAMLRRLGVPEERQQIFQSHAAALGEAQRGRGI 236
Query 240 TLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQA 299
A+ F VA D+ G+LV ++GP W L +EL F STPR IQA
Sbjct 237 APALSFTVAPDVRGGQLVALSGPHATAEAVWHSLVLVTPGTPSVAAELCRFASTPRAIQA 296
Query 300 MIPGSGVGVTRFRPKVHVTLWS 321
M+ G GV V FRP VHVTLWS
Sbjct 297 MMRGVGVAVNHFRPSVHVTLWS 318
>gi|315502807|ref|YP_004081694.1| LysR family transcriptional regulator [Micromonospora sp. L5]
gi|315409426|gb|ADU07543.1| transcriptional regulator, LysR family [Micromonospora sp. L5]
Length=318
Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/322 (55%), Positives = 216/322 (68%), Gaps = 5/322 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MTP QLRAY AVVRLGSV+ AAA+L +S++ VS+ + LR+E D LFTRT AGLAFTPG
Sbjct 1 MTPTQLRAYVAVVRLGSVKQAAAQLEVSESAVSLLIGQLRREFGDQLFTRTAAGLAFTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
GLRLASRA E+LGLQ +T +EV+ AAHGRR+LR+AASS FAE AAP LIELF+ RA DL
Sbjct 61 GLRLASRAAEMLGLQDRTVLEVSSAAHGRRMLRVAASSEFAEFAAPRLIELFARRAADLD 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
+ELSV F L+ +RA DIA+GP ++ +I RP + Y+++TVV P+ PL A
Sbjct 121 IELSVCDPGSFESLLLTRAADIAMGPLPPV---AEPAISCRPMMNYRLVTVVGPDHPL-A 176
Query 181 GIPM-PALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA 239
G+P P LR Q W+LGPSA + G + MLR L +PE +Q+IFQS AAAL E R G
Sbjct 177 GVPASPGQLRDQTWLLGPSATNTLGAVPAMLRRLGVPEERQQIFQSHAAALGEAQRGRGI 236
Query 240 TLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQA 299
A+ F VA D+ G+LV ++GP W L +EL F STPR IQA
Sbjct 237 APALSFTVAPDVRGGQLVALSGPHATAEAVWHSLVLVTPGTPSVAAELCRFASTPRAIQA 296
Query 300 MIPGSGVGVTRFRPKVHVTLWS 321
M+ G GV V FRP VHVTLWS
Sbjct 297 MMRGVGVAVNHFRPSVHVTLWS 318
>gi|116670589|ref|YP_831522.1| LysR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116610698|gb|ABK03422.1| transcriptional regulator, LysR family [Arthrobacter sp. FB24]
Length=327
Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/329 (41%), Positives = 182/329 (56%), Gaps = 12/329 (3%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT +QLRA++ V RLGS+ AAAA L +S+ VS +AALR++L DPLF R G+A TPG
Sbjct 3 MTLSQLRAFALVARLGSLHAAAAALAVSEPAVSSALAALRRDLGDPLFVRAAGGIALTPG 62
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G LA A EI+GL Q EV+ A LLRI A++ FAEHAA L++LF+ R S
Sbjct 63 GRALADYAQEIVGLADQARWEVSHATTDAGLLRIVATAPFAEHAAGRLLDLFTKRVPGAS 122
Query 121 VELSVHPTSRFRELICSRAVDIAIG--PASESSIGSDGSIFLRPFLKYQIITVVAPNSPL 178
V++ V + L+ RA DIA+G P + G+D + + PFL+YQ + VVA + PL
Sbjct 123 VDVVVESAANIASLLLDRAFDIALGAMPTQPAGPGADVGLEMVPFLRYQRVFVVAASHPL 182
Query 179 A---AGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLA-IPESQQRIFQSDAAALEEVM 234
A +P+ LL + W GPS + + L + +PE + ++DA A +
Sbjct 183 AVLHGPVPLARLL-DRPWFAGPSGIQSETDEGRWLSSMGVVPEVIRLSSETDALA---AV 238
Query 235 RVG-GATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFIST 293
R G G TLA+G V +L G LV V G +G W +TL+ L F++T
Sbjct 239 RAGEGLTLAVGHIVRAELQTGVLVRVPVVGTPVSGLWWASTLSHGRTTSKAKALQRFVTT 298
Query 294 PRCIQAMI-PGSGVGVTRFRPKVHVTLWS 321
P AM+ PG G+ R KVHV LWS
Sbjct 299 PDATAAMVAPGGSRGLERRGSKVHVALWS 327
>gi|284044478|ref|YP_003394818.1| LysR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283948699|gb|ADB51443.1| transcriptional regulator, LysR family [Conexibacter woesei DSM
14684]
Length=324
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/324 (37%), Positives = 168/324 (52%), Gaps = 7/324 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT AQL+++ V RLGSVRAAAAEL ++D +S+ V ALR+E D LF R+G G+A TPG
Sbjct 1 MTLAQLQSFVLVARLGSVRAAAAELEVTDPAISVAVGALRREFGDELFVRSGRGIALTPG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G RLA+ A EILGL +Q V + R + +AA+ AEH P L++ F +R DDL
Sbjct 61 GRRLAALASEILGLAEQARRSVRDTPDQPRRIEVAATGVVAEHVGP-LLDAFGARDDDLE 119
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA- 179
+ + P + F +L+ R DIA+GP + +I PFL+ + + V P PLA
Sbjct 120 IAVDAVPGAGFADLLEHRRADIALGP--HPGLERAATIATVPFLRCRCVVVATPGHPLAR 177
Query 180 -AGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGG 238
GI P+ L ++W++GP + + + ++ S AAA+ G
Sbjct 178 RRGI-APSALAAERWLVGPPPVDPTTGVGLFFERHGLAPREIGVYTSHAAAIAAAGAGDG 236
Query 239 ATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRCIQ 298
L + +V +L LV + G W +TL PA L F +TP +
Sbjct 237 IALTLHHSVRVELRRRTLVPLDVRGTPLVELWHASTLGLDRAPPAALALQRFATTPEAMH 296
Query 299 AMIPG-SGVGVTRFRPKVHVTLWS 321
AM G +G R RP VHVTLWS
Sbjct 297 AMSAGRAGTTSARARPPVHVTLWS 320
>gi|331696456|ref|YP_004332695.1| LysR family transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326951145|gb|AEA24842.1| transcriptional regulator, LysR family [Pseudonocardia dioxanivorans
CB1190]
Length=315
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/326 (35%), Positives = 159/326 (49%), Gaps = 16/326 (4%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT QL A+ V RLGSV+AAA L +S+ VS +AALRK L DPL R+G G+ T G
Sbjct 1 MTLTQLSAFVLVARLGSVKAAANALSVSEPAVSQALAALRKYLGDPLLVRSGNGMTMTAG 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G RL + A +++ L + V A LR+ A S E A L E F +R+ +
Sbjct 61 GTRLLAIAAQMVALGAEAESAVRSAKGAPEQLRLVAPSPVVEFVAGPLGETFGARSSG-T 119
Query 121 VELS--VHPTSRFRELICSRAVDIAIGP--ASESSIGSDGSIFLRPFLKYQIITVVAPNS 176
+E+S V T+ L+ R D+A+GP E S+G + P + +++ + AP++
Sbjct 120 IEISSGVATTAEMGALVSQRLADVALGPHLGGERSMG----LVSEPIFRARLVVLAAPDA 175
Query 177 PLAAGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV 236
G P W++ SA D ++ +LR IPES +F + AA + R
Sbjct 176 RF-TGPPA-----RWPWLVETSATDPDSDVGRLLRAARIPESSLSVFPTQTAAWDAAARG 229
Query 237 GGATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTPRC 296
G I + L V PG W V+TL R A S L F+STP
Sbjct 230 AGVAPGIAHLAVHHVRRRELTVVELPGTPLDVVWHVSTLPVDRRSAAASSLRHFLSTPEA 289
Query 297 IQAM-IPGSGVGVTRFRPKVHVTLWS 321
++ + PG G+ RFRP V+VT+WS
Sbjct 290 MKLLRAPGEGLAPARFRPPVYVTIWS 315
>gi|85705471|ref|ZP_01036569.1| transcriptional regulator, LysR family protein [Roseovarius sp.
217]
gi|85669896|gb|EAQ24759.1| transcriptional regulator, LysR family protein [Roseovarius sp.
217]
Length=290
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/165 (36%), Positives = 90/165 (55%), Gaps = 5/165 (3%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT Q+ A+ V RLG R AA +L L+ +S +A L +EL PLF R G+GL T
Sbjct 1 MTLDQITAFLWVARLGGFRKAAEQLHLTQPAISTRIAKLEEELATPLFERDGSGLTLTRQ 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G L S A ++L +Q + V + A L RI AS A+ P ++ FS+ ++
Sbjct 61 GTLLLSYARQMLFVQDEIRKHVADTAGLTGLFRIGASETIAQSWLPDFLKAFSAVYPRIN 120
Query 121 VELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPF 163
++L+V ++ RE + +R +D+A+ GP SE S+ +I L PF
Sbjct 121 IDLTVDISTDLRESLLTRRLDLALLMGPVSEFSV---ENIALPPF 162
>gi|297530416|ref|YP_003671691.1| LysR family transcriptional regulator [Geobacillus sp. C56-T3]
gi|297253668|gb|ADI27114.1| transcriptional regulator, LysR family [Geobacillus sp. C56-T3]
Length=298
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/287 (25%), Positives = 122/287 (43%), Gaps = 12/287 (4%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
M +L+ + + + + A L LS VS+H+ L KE LF R+ L TP
Sbjct 1 MYYDELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
G L RA +++ L +QT ++ E H + L+I AS E+ P L+ F R +L
Sbjct 61 GELLYDRAKQMVALYEQTKQDILEHHHSVKGKLKIGASFTIGEYILPPLLPDFQKRYPEL 120
Query 120 SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP 177
+E+ + T EL+ S VDI + G +E + + PF++ +++ V +
Sbjct 121 ELEVMIGNTKEIVELVKSYQVDIGLIEGQTNEKELS------VHPFMQDELVIVASNRHE 174
Query 178 LAAGIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV 236
LA + A L+++ W+ +R + I S+ E ++
Sbjct 175 LAQKEEVTIAKLQNEAWVAREVGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLING 234
Query 237 GGATLAIGFAVAKDLAAGRL--VHVTGPGLDRAGEWCVATLAPSARQ 281
+L VA+D+ G L VH+ P R + A + + +
Sbjct 235 NALSLLSRSVVARDIEHGHLSIVHLNHPPFYRMFSYIYAPIMENKQN 281
>gi|56419943|ref|YP_147261.1| LysR family transcriptional regulator [Geobacillus kaustophilus
HTA426]
gi|56379785|dbj|BAD75693.1| transcriptional regulator (LysR family) [Geobacillus kaustophilus
HTA426]
Length=298
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/287 (25%), Positives = 121/287 (43%), Gaps = 12/287 (4%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
M +L+ + + + + A L LS VS+H+ L KE LF R+ L TP
Sbjct 1 MYYEELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
G L RA +++ L +QT ++ E H + L+I AS E+ P L+ F R +L
Sbjct 61 GELLYDRAKQMVALYEQTKQDILEHHHSVKGKLKIGASFTIGEYILPPLLPDFQKRYPEL 120
Query 120 SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP 177
+E+ + T EL+ S VDI + G +E + + PF++ +++ V +
Sbjct 121 ELEVMIGNTKEIVELVRSYQVDIGLIEGQTNEKELS------VHPFMQDELVIVASNRHE 174
Query 178 LAAGIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV 236
LA + A L+++ W+ +R + I S+ E ++
Sbjct 175 LAQKEEVTIAELQNEAWVAREVGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLING 234
Query 237 GGATLAIGFAVAKDLAAGRL--VHVTGPGLDRAGEWCVATLAPSARQ 281
+L VA+D+ G L V + P R + A + + +
Sbjct 235 NALSLLSRSVVARDIEHGHLSIVRLNHPPFYRMFSYIYAPIMENKQN 281
>gi|325001695|ref|ZP_08122807.1| LysR family transcriptional regulator [Pseudonocardia sp. P1]
Length=224
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/176 (33%), Positives = 92/176 (53%), Gaps = 8/176 (4%)
Query 2 TPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGG 61
T A++RA+ A+ GSVR AAA L ++++ VS V AL +E+ PL R G G+ TP G
Sbjct 10 TTARMRAFVALADQGSVRGAAARLVVTESTVSAAVRALAEEVGVPLVERDGRGVRLTPAG 69
Query 62 LRLASRAVEILGL---QQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD 118
R A A ++LGL A + HGR +R+AA + EH P L+ F R
Sbjct 70 HRYAGYARQVLGLLEEGAAAARGEADPEHGR--VRLAAVTTAGEHLLPDLLAGFRDRHPG 127
Query 119 LSVELSVHPTSRFRELICSRAVDIAIG---PASESSIGSDGSIFLRPFLKYQIITV 171
+++E+ V P+ R ++ VD+ + PA+ + G+ G +R + ++ V
Sbjct 128 VTLEVDVAPSDRVWPMLAHHEVDVVVAGRPPAAATGPGASGPPLVRAVRENTLVVV 183
>gi|78043535|ref|YP_359484.1| LysR family transcriptional regulator [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995650|gb|ABB14549.1| transcriptional regulator, LysR family [Carboxydothermus hydrogenoformans
Z-2901]
Length=301
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/301 (26%), Positives = 128/301 (43%), Gaps = 11/301 (3%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
M QL A+ +V GS+ AA + LS +S +AAL +L L RT G+ T
Sbjct 1 MNLNQLEAFCNIVEQGSISKAAKLMHLSQPALSTQIAALENQLQVKLMERTNRGIELTEA 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAH-GRRLLRIAASSAFAEHAAPGLIELFSSRADDL 119
G L A I L + E+ + L I A+S +A P I +F + +
Sbjct 61 GETLLYYAKRICNLVKNLNEEIERLKNLEEEELSIGAASTIGGYALPCSIYIFQEKYESA 120
Query 120 SVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA 179
++L++ T + E + R +DI + ES+I S+ F+ L Y + +V PN+
Sbjct 121 RIKLTIMNTEKVIEALLDRQIDIGL---VESNIESNE--FISSHLTYDELVLVVPNNNSY 175
Query 180 AGIPMPAL--LRHQQWMLGPSAGSVDGEIATML--RGLAIPESQQRIFQSDAAALEEVMR 235
+ L LR +++ + I L +GL I + + + A++ +
Sbjct 176 KNKEILTLDELRTLPFIIREKGSGIRQTIEKALAEKGLNISDLNIVMEVNSIDAIKVAVE 235
Query 236 VG-GATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAVSELVGFISTP 294
G G +L FAV K+L G L + + + TL R + + FI++P
Sbjct 236 SGKGVSLLPRFAVKKELRTGSLKSIKVKDISLLHPFVAITLKNKKRSLLEKKFLAFINSP 295
Query 295 R 295
+
Sbjct 296 K 296
>gi|261419611|ref|YP_003253293.1| LysR family transcriptional regulator [Geobacillus sp. Y412MC61]
gi|319766429|ref|YP_004131930.1| LysR family transcriptional regulator [Geobacillus sp. Y412MC52]
gi|261376068|gb|ACX78811.1| transcriptional regulator, LysR family [Geobacillus sp. Y412MC61]
gi|317111295|gb|ADU93787.1| transcriptional regulator, LysR family [Geobacillus sp. Y412MC52]
Length=298
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 111/260 (43%), Gaps = 10/260 (3%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
M +L+ + + + + A L LS VS+H+ L KE LF R+ L TP
Sbjct 1 MYYDELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
G L RA +++ L +QT ++ E H + L I AS E+ P L+ F R +L
Sbjct 61 GELLYDRAKQMMVLYEQTKQDILEHHHSVKGKLTIGASFTIGEYILPPLLPDFQKRYPEL 120
Query 120 SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP 177
+E+ + T EL+ S VDI + G +E + + PF++ +++ V +
Sbjct 121 ELEVMIGNTKEIVELVKSYQVDIGLIEGQTNEKELS------VHPFMQDELVIVASNRHE 174
Query 178 LAAGIPMP-ALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRV 236
LA + A L+++ W+ +R + I S+ E ++
Sbjct 175 LAQKEEVTIAELQNEAWVAREVGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLING 234
Query 237 GGATLAIGFAVAKDLAAGRL 256
+L VA+D+ G L
Sbjct 235 NALSLLSRSVVARDIEHGHL 254
>gi|339502470|ref|YP_004689890.1| HTH-type LysR family transcriptional regulator [Roseobacter litoralis
Och 149]
gi|338756463|gb|AEI92927.1| putative HTH-type transcriptional regulator, LysR family [Roseobacter
litoralis Och 149]
Length=292
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/156 (33%), Positives = 79/156 (51%), Gaps = 2/156 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT Q++ + V RLG R AA L LS VS +A L +EL PLF R L T
Sbjct 1 MTFDQIKTFLWVARLGGFRKAADRLNLSQPAVSTRIANLEQELRVPLFERGRGDLVLTKH 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G L S A ++L ++++ V + L R+ AS A+ P ++ FS + ++
Sbjct 61 GTLLLSYAEQMLFVEEEIKQRVANPSEAEGLFRVGASETIAQAWLPDFLKAFSEQYPRVN 120
Query 121 VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS 154
V+L+V + R + R +D+A+ GP SE S+ +
Sbjct 121 VDLTVDISLNLRAELLERKLDLALLMGPVSEFSVEN 156
>gi|138894930|ref|YP_001125383.1| LysR family transcriptional regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196248503|ref|ZP_03147204.1| transcriptional regulator, LysR family [Geobacillus sp. G11MC16]
gi|134266443|gb|ABO66638.1| Transcriptional regulator (LysR family) [Geobacillus thermodenitrificans
NG80-2]
gi|196212228|gb|EDY06986.1| transcriptional regulator, LysR family [Geobacillus sp. G11MC16]
Length=298
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/285 (23%), Positives = 118/285 (42%), Gaps = 8/285 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
M +L+ + + + + A L LS VS+H+ L KE LF R+ L TP
Sbjct 1 MYYDELKTFITLAEVKNFTKTAEILHLSQPSVSLHIKNLEKEFQTKLFIRSPKRLRMTPT 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
G L RA +++ L +QT ++ E H + L+I AS E+ P + F R +L
Sbjct 61 GELLYDRAKQMMALYEQTKQDILEHHHSVKGELKIGASFTIGEYILPLFLLDFQQRYPEL 120
Query 120 SVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA 179
+E+ + T EL+ S VDI + +D + + PF++ +++ V + LA
Sbjct 121 ELEVMIGNTKEIVELVRSYQVDIGLIEGQ----TNDKELSVHPFMQDELVIVASNCHELA 176
Query 180 AGIPMPAL-LRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGG 238
+ L+++ W+ +R + I S+ E ++
Sbjct 177 QKEEVTITDLQNETWVAREIGSGTREYFNHFIRSNGLKVKSLMIISSNQGIKETLINGNA 236
Query 239 ATLAIGFAVAKDLAAGRL--VHVTGPGLDRAGEWCVATLAPSARQ 281
+L VA+D+ G L + + P R + + + + +
Sbjct 237 LSLLSRSVVARDIEHGHLSIIRLKNPPFYRMFSYIYSPIMENKQN 281
>gi|297568142|ref|YP_003689486.1| transcriptional regulator, LysR family [Desulfurivibrio alkaliphilus
AHT2]
gi|296924057|gb|ADH84867.1| transcriptional regulator, LysR family [Desulfurivibrio alkaliphilus
AHT2]
Length=311
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 129/308 (42%), Gaps = 33/308 (10%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
+T QL + AV V A+A+L L+ + VSM + L+ +LD PLF R G L F
Sbjct 3 ITLRQLEIFVAVAETSQVTKASAKLHLTQSAVSMALNELQNQLDGPLFDRKGRNLLFNDR 62
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR------LLRIAASSAFAEHAAPGLIELFSS 114
G L A EILG I E+ G + L+I ASS + P I +F
Sbjct 63 GRYLLPLAKEILG-----QINNIESLLGEKSGSVAGSLKIVASSTIGNYVLPYFIGVFK- 116
Query 115 RADDLSVELSVHPTSRFRELICS-RAVDIAIGPASESSIG------SDGSIFLRPFLKYQ 167
+HP L+C+ R + I E+ +G ++ + + P+L+ +
Sbjct 117 ---------KLHPQVSLDMLVCNTRHAETMIAEG-EAGLGFVEGEVTNDQVRIIPWLEDE 166
Query 168 IITVVAPNSPLAA--GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQS 225
++ + P +PLA +P L +W++ GS G++ G +P + +
Sbjct 167 LVVIAGPTNPLAGKENFELPGDLELCEWII-REKGSGTGQVFKKKLGRHLPGLRVAMELG 225
Query 226 DAAALEEVMRVGGATLAI-GFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPAV 284
A+++ + GG + V +++ G L ++ GLD + A +
Sbjct 226 HTEAIKKAVEAGGGVACLSSLTVCREVEEGWLASLSVKGLDMRRTLQIIHYKNKAMTGLM 285
Query 285 SELVGFIS 292
E V F S
Sbjct 286 QEFVAFCS 293
>gi|254503417|ref|ZP_05115568.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
gi|222439488|gb|EEE46167.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
Length=298
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/156 (31%), Positives = 81/156 (52%), Gaps = 2/156 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT QLRA+ AV R+G VR AA ++ +S +S +++L L LF+R G++ T
Sbjct 6 MTLEQLRAFLAVARMGGVRKAAEQMNISQPAISARISSLEDYLGTRLFSRETTGVSLTAK 65
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G+ L A +I+ + ++ +V LLR+ + A+ P + + L+
Sbjct 66 GVVLRDYAEQIMAITERIKGDVMSDDSISSLLRLGVAETIAQTWLPDFLAALHTTFQRLN 125
Query 121 VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS 154
+E++V + RE++ RA+D+ I GP SE S +
Sbjct 126 IEVTVDTSFNLREMLLDRALDLTILMGPISEYSTDN 161
>gi|254462106|ref|ZP_05075522.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
HTCC2083]
gi|206678695|gb|EDZ43182.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
HTCC2083]
Length=292
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (33%), Positives = 81/156 (52%), Gaps = 2/156 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT Q++ + V RLG R AA L LS VS +A L EL PLF R+ + + T
Sbjct 1 MTFDQIKTFLWVARLGGFRKAAERLHLSQPAVSTRIANLEDELRVPLFERSQSDVILTKH 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G L S A ++L ++++ V + L R+ AS A+ P ++ FS++ ++
Sbjct 61 GSLLLSYAEQMLFVEEEIKQRVANPSETEGLFRVGASETIAQAWLPEFLKAFSTQYPRVN 120
Query 121 VELSVHPTSRFRELICSRAVDIA--IGPASESSIGS 154
V+L+V + R + R +D+A +GP SE S+ +
Sbjct 121 VDLTVDISLNLRTALLERRLDLAFLMGPVSEFSVEN 156
>gi|127513315|ref|YP_001094512.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
gi|126638610|gb|ABO24253.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
Length=304
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/267 (27%), Positives = 120/267 (45%), Gaps = 15/267 (5%)
Query 5 QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL 64
Q+ + AV L SV AAA +L ++ + VSM + L L PLF R G L + G L
Sbjct 7 QIMVFDAVASLESVSAAARKLSMTQSAVSMSLGQLENLLGRPLFIRQGNRLTLSHWGNWL 66
Query 65 ASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELS 124
RA +L QQ + + E R+ +S AEH P LI + +L +EL+
Sbjct 67 RPRARRLLQDAQQIELGLHEQHLISGRFRLCSSQTAAEHLLPELISKIDTDFPELRIELT 126
Query 125 VHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAAGIPM 184
V T E + + D I D ++ +L ++ V +P+ P A +
Sbjct 127 VENTENVVEGLLNYEYDFGIIEGR----NDDSRLYQEQWLDDHLVVVASPHHPYAKQTNI 182
Query 185 P-ALLRHQQWMLGPS-AGS---VDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGA 239
A L +W+L AG+ +G I ++ L + + + + + L+ +++ G
Sbjct 183 SLAQLEQARWVLREQGAGTRRIFEGAIHGVIEKLHVWKEYEHV-----SLLKALVKNGPY 237
Query 240 TLAIGF-AVAKDLAAGRLVHVTGPGLD 265
++ F V K++AAG LV + P L+
Sbjct 238 LSSLPFLDVEKEVAAGELVILPTPQLN 264
>gi|218549570|ref|YP_002383361.1| DNA-binding transcriptional regulator [Escherichia fergusonii
ATCC 35469]
gi|218357111|emb|CAQ89744.1| putative DNA-binding transcriptional regulator [Escherichia fergusonii
ATCC 35469]
gi|324114427|gb|EGC08396.1| LysR substrate binding domain-containing protein [Escherichia
fergusonii B253]
gi|325497970|gb|EGC95829.1| DNA-binding transcriptional regulator [Escherichia fergusonii
ECD227]
Length=289
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/266 (29%), Positives = 122/266 (46%), Gaps = 15/266 (5%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
+T QL ++ V++ GS A+A L LS + VS + L +L LF R G L
Sbjct 3 ITLRQLEVFTEVLKSGSTTQASAMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEH 62
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
G L RA+ +L + AIE+ + G +RI ASS + P +I + +L
Sbjct 63 GRLLYPRALALL----ERAIEIEQLFRGDNGAIRIFASSTIGNYILPEVIARYRQDYPEL 118
Query 120 SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP 177
+ELSV + + + VDI + GP + I S+ P+L+ +++ +P+SP
Sbjct 119 PLELSVGNSQEVIQAVLDFRVDIGLIEGPCHSTEIISE------PWLEDELVVFASPSSP 172
Query 178 LAAGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVG 237
LA G L + W+L GS EI L +P+ Q + ++ A++ +R G
Sbjct 173 LAQGPVTLEQLANAPWILR-ERGSGTREIVDYLLLSHLPKFQMAMELGNSEAIKHAVRHG 231
Query 238 -GATLAIGFAVAKDLAAGRLVHVTGP 262
G + + + L AG L V P
Sbjct 232 LGISCLSRRVIEEQLQAGTLSEVAVP 257
>gi|89055062|ref|YP_510513.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
gi|88864611|gb|ABD55488.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
Length=292
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/156 (33%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT Q+R + V RLG R A+ L LS VS ++ L EL PLF R L T
Sbjct 1 MTFEQIRTFLWVARLGGFRKASDRLNLSQPAVSTRISNLEGELQVPLFERGPGQLILTKH 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G +L + A ++L ++++ V A+ L RI AS A+ P +E S ++
Sbjct 61 GQQLLAYAEQMLFVEEEIKNRVGNASETEGLFRIGASETIAQAWLPEFLEAVSEAYPRVN 120
Query 121 VELSVHPTSRFRELICSRAVDIA--IGPASESSIGS 154
V+L+V + R+ + R +D+ +GP SE S+ +
Sbjct 121 VDLTVDISGSLRDALVERRLDLVFLMGPISEFSVKN 156
>gi|92113678|ref|YP_573606.1| LysR family transcriptional regulator [Chromohalobacter salexigens
DSM 3043]
gi|91796768|gb|ABE58907.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
DSM 3043]
Length=324
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/298 (29%), Positives = 128/298 (43%), Gaps = 26/298 (8%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
+T QL+ + AV R S AA +LGL+ VS + L + L+ PLF G L P
Sbjct 10 LTFRQLQVFQAVHRQQSYSRAAEQLGLTQPAVSAQIRQLEQALEQPLFKYAGKTLHVLPA 69
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
LA+ I G +E++E A R L +AA S A++ P ++ F +R ++
Sbjct 70 ADALAASVQSIFGQVSSLQMELSELAGTIRGELNLAAVST-AQYVVPHILARFRARYPEV 128
Query 120 SVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSP-L 178
V L V + E + R D+ I + D ++ P L ++I VV P P L
Sbjct 129 QVRLRVCNRGQALERLAERRDDLVIM----GMVPEDANLAFMPILDNEMIPVVWPGHPLL 184
Query 179 AAGIP-MPALLRHQQWMLGPSAGS-------VDGEIATMLRGLAIPESQQRIFQSDAAAL 230
A P + R+ M P +G+ V E ++ L + ++ A
Sbjct 185 TADAPTLEDFTRYYVLMREPGSGTRTAFEDFVARERVSLRHTLEL--------GTNEAIK 236
Query 231 EEVMRVGGATLAIGFAVAKDLAAGRLVHVTGPGLDRAGEWCVATLAPSARQPA-VSEL 287
+ VM G + AV +LA+G L T PG WC T+ P R P V+EL
Sbjct 237 QGVMAHLGVAVLPRLAVQLELASGLLASPTLPGFPLRRSWC--TVHPKDRYPTPVTEL 292
>gi|30468080|ref|NP_848967.1| lysR-like transcriptional regulator [Cyanidioschyzon merolae
strain 10D]
gi|75328380|sp|Q85G62.1|RBCR_CYAME RecName: Full=Probable RuBisCO transcriptional regulator
gi|30409180|dbj|BAC76129.1| lysR-like transcriptional regulator [Cyanidioschyzon merolae
strain 10D]
Length=303
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/181 (32%), Positives = 87/181 (49%), Gaps = 4/181 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T QLR + A+V GS + AA L +S VS+ + L ++L+ PLF R+ T
Sbjct 6 FTLDQLRIFQAIVVEGSFQKAAQSLYISQPAVSLQIQNLEQQLNAPLFDRSHRKAKLTEA 65
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
G A IL L ++T + + H + L I AS + PGLI LF + +
Sbjct 66 GQVFFKYASRILALCEETCRALEDLHHLQAGSLIIGASQTIGTYLMPGLIGLFRQKYPHI 125
Query 120 SVELSVHPTSRFRELICSRAVDIA-IGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPL 178
V+L VH T R + +D+A IG A + + SI +PF + ++ +V P+ P
Sbjct 126 CVQLQVHSTRRIAWSVAKGHIDVAVIGGAIPTELIPLLSI--QPFAEDELTLIVPPDHPF 183
Query 179 A 179
A
Sbjct 184 A 184
>gi|149912765|ref|ZP_01901299.1| transcriptional regulator, LysR family protein [Roseobacter sp.
AzwK-3b]
gi|149813171|gb|EDM72997.1| transcriptional regulator, LysR family protein [Roseobacter sp.
AzwK-3b]
Length=292
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/156 (31%), Positives = 76/156 (49%), Gaps = 2/156 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
MT Q++ + V RLG R AA L LS +S +A L +EL PLF R L T
Sbjct 1 MTFDQIKTFLWVARLGGFRRAAERLNLSQPAISTRIAKLEQELRVPLFERGMGELVLTKH 60
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G L S ++L ++++ V + L R+ AS A+ P ++ S ++
Sbjct 61 GTLLLSYVEQMLFVEEEIKQRVANPSETEGLFRVGASETIAQAWLPDFLKALSEHYPRVN 120
Query 121 VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS 154
V+L+V + R + R +D+A+ GP SE S+ +
Sbjct 121 VDLTVDISLNLRSSLLERKLDLALLMGPVSEFSVEN 156
>gi|282897455|ref|ZP_06305457.1| Transcriptional Regulator, LysR family [Raphidiopsis brookii
D9]
gi|281198107|gb|EFA73001.1| Transcriptional Regulator, LysR family [Raphidiopsis brookii
D9]
Length=339
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/146 (37%), Positives = 75/146 (52%), Gaps = 3/146 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T QLR A+ + GS + AA L +S VS+ V L ++LD PLF R G T
Sbjct 6 FTLDQLRILKAIAQEGSFKRAAESLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA 65
Query 61 GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD 118
G L S +ILGL Q+T AIE + G L+ + AS + P +I +F + D
Sbjct 66 GHLLLSYGEKILGLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRQKYPD 124
Query 119 LSVELSVHPTSRFRELICSRAVDIAI 144
++V+L VH T R + + VD+AI
Sbjct 125 VAVQLHVHSTRRTAWSVANGQVDLAI 150
>gi|159045691|ref|YP_001534485.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
gi|157913451|gb|ABV94884.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length=302
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/156 (36%), Positives = 75/156 (49%), Gaps = 2/156 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T Q+R + AVVRLGS+ AAA GL+ V+ + L L LF RT GL T
Sbjct 8 FTIEQIRTFLAVVRLGSLHRAAAAAGLTQPAVTARIKNLEHALSCALFERTSGGLKLTKR 67
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLS 120
G L + A + L + +V + A LRI AS A P L+ L
Sbjct 68 GELLVAHAEKFEHLVELVQRDVVDPAGLEGRLRIGASETVAACWLPELVSRLHGAYPKLE 127
Query 121 VELSVHPTSRFRELICSRAVDIAI--GPASESSIGS 154
+EL V +S RE + +R +D+AI GP SE S+ +
Sbjct 128 IELKVDVSSDLREALINREIDLAILLGPISEYSVDN 163
>gi|335041952|ref|ZP_08534979.1| transcriptional regulator [Methylophaga aminisulfidivorans MP]
gi|333788566|gb|EGL54448.1| transcriptional regulator [Methylophaga aminisulfidivorans MP]
Length=310
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/267 (29%), Positives = 109/267 (41%), Gaps = 16/267 (5%)
Query 5 QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL 64
QL + AV R GSV AA + LS + S +A K+ + LF R G L G +L
Sbjct 7 QLEIFVAVSRTGSVSKAAQAVFLSQSAASTALAEFEKQYNVQLFDRVGKSLRINQAGQQL 66
Query 65 ASRAVEILGLQQQTAIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELS 124
AVE+L Q+ + E G L++I A+ + A L+ F DD +EL
Sbjct 67 LPHAVELLDRAQEIH-NLMEGHAGYGLMKIGATLTIGNYLATLLVAEFLHEHDDSRIELQ 125
Query 125 VHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA--GI 182
VH T E I + +D+ + I + ++ +++ AP PLA +
Sbjct 126 VHNTKTIIEQIANHELDLGLIEGG----CHHPDIEVETWIADELVVFCAPQHPLATKKKV 181
Query 183 PMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGATLA 242
M LL + W+L G T R SQ I + + E V R + L
Sbjct 182 TMQQLLA-EPWILREKGS---GTRETFDRAFHNYHSQLNI-RLELEHTEAVKRTVESGLG 236
Query 243 IG----FAVAKDLAAGRLVHVTGPGLD 265
IG A+ G LV V P LD
Sbjct 237 IGCISRLALKDAFRRGSLVPVNTPALD 263
>gi|312878800|ref|ZP_07738600.1| transcriptional regulator, LysR family [Aminomonas paucivorans
DSM 12260]
gi|310782091|gb|EFQ22489.1| transcriptional regulator, LysR family [Aminomonas paucivorans
DSM 12260]
Length=309
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/263 (27%), Positives = 111/263 (43%), Gaps = 11/263 (4%)
Query 5 QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL 64
LR+++ VRL AA LG + + ++ H+ AL EL LF R G + TP G +L
Sbjct 5 NLRSFAVAVRLERFARAAETLGYTPSTITAHIQALEAELGAFLFFREGGVVRLTPEGEKL 64
Query 65 ASRAVEILGLQQQTAIEVTEAAHGRRL----LRIAASSAFAEHAAPGLIELFSSRADDLS 120
A +++ L +Q EA R+ L + A+ +H G +E F R D+S
Sbjct 65 LPFAEQMVALAEQAG----EAVRSPRVPCGPLLVGAAETLVDHRLGGFLEGFCRRYPDVS 120
Query 121 VELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA 180
+ L + FR + +D+A+ S D + + + + VAP+ PLA+
Sbjct 121 LSLCYGSCNEFRSALRRGTLDLALLLDRSSE---DPDLEVLDLGEEPLAFAVAPDHPLAS 177
Query 181 GIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVGGAT 240
G P L Q +L + G + +L L + A L+ V GG T
Sbjct 178 GPLTPPGLEEQTLILTEAGCYYRGHLEGVLEALGVHPRAVLSLGQTAPILQLVRAGGGIT 237
Query 241 LAIGFAVAKDLAAGRLVHVTGPG 263
A+A D AG L + G
Sbjct 238 FLPRVALAGDFEAGTLTELAWEG 260
>gi|282899491|ref|ZP_06307457.1| Transcriptional Regulator, LysR family [Cylindrospermopsis raciborskii
CS-505]
gi|281195648|gb|EFA70579.1| Transcriptional Regulator, LysR family [Cylindrospermopsis raciborskii
CS-505]
Length=335
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/146 (36%), Positives = 75/146 (52%), Gaps = 3/146 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T QLR A+ + GS + AA L +S VS+ V L ++LD PLF R G T
Sbjct 6 FTLDQLRILKAIAQEGSFKRAAESLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA 65
Query 61 GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD 118
G L + +ILGL Q+T AIE + G L+ + AS + P +I +F + D
Sbjct 66 GHLLLNYGEKILGLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRQKYPD 124
Query 119 LSVELSVHPTSRFRELICSRAVDIAI 144
++V+L VH T R + + VD+AI
Sbjct 125 VAVQLHVHSTRRTAWSVANGQVDLAI 150
>gi|260776746|ref|ZP_05885640.1| transcriptional regulator LysR family [Vibrio coralliilyticus
ATCC BAA-450]
gi|260606412|gb|EEX32686.1| transcriptional regulator LysR family [Vibrio coralliilyticus
ATCC BAA-450]
Length=306
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/154 (34%), Positives = 73/154 (48%), Gaps = 3/154 (1%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
+T QLR A+ + G+ AA +L LS +GVS +A L KELD LF R L P
Sbjct 3 ITAKQLRVLKAISQAGTTSLAAEQLNLSQSGVSRMLAQLEKELDLDLFERDRGRLKIKPE 62
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR---LLRIAASSAFAEHAAPGLIELFSSRAD 117
L L S A+ +L +Q + +E GR+ + +IA FA+ AP LI+ +
Sbjct 63 SLNLLSNALHVLEGMEQLQSQASEIKRGRKAKQVFKIAMPYTFAKSLAPKLIKQLVALFP 122
Query 118 DLSVELSVHPTSRFRELICSRAVDIAIGPASESS 151
D+SVEL E + S D+ S S
Sbjct 123 DVSVELFSSHYQSIEESVYSGQADVGFTRISNHS 156
>gi|170750771|ref|YP_001757031.1| LysR family transcriptional regulator [Methylobacterium radiotolerans
JCM 2831]
gi|170657293|gb|ACB26348.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans
JCM 2831]
Length=300
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/179 (30%), Positives = 89/179 (50%), Gaps = 13/179 (7%)
Query 6 LRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRLA 65
LR + AV R GS+ AA+A+L ++ + +S +A L ELD LF R G+ +P G LA
Sbjct 6 LRYFLAVARTGSIAAASAQLNVAASAISRQIANLEAELDCVLFERRPRGMVPSPAGELLA 65
Query 66 SRAVEILGLQQQTAIEVTE-AAHGRRLLRIAASSAFAEHAAPGLIELFSSRADDLSVELS 124
A ++L +Q E+ E R L+R+A S F+ P I F + + E++
Sbjct 66 QHAHQVLIRSEQVVTEIRELEGLARGLIRVACSEGFSLDIVPNAIAAFHADHPGIRFEVT 125
Query 125 VHPTSRFRELICSRAVDI----AIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLA 179
V P ++ + + + D+ A+ P ++ + DG + ++ + AP+ PLA
Sbjct 126 VQPPAQVTQTVAAGDADLGITFALTPTAQVEVLYDGQV--------DMLALAAPDHPLA 176
>gi|254411057|ref|ZP_05024835.1| LysR substrate binding domain protein [Microcoleus chthonoplastes
PCC 7420]
gi|196182412|gb|EDX77398.1| LysR substrate binding domain protein [Microcoleus chthonoplastes
PCC 7420]
Length=338
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/146 (37%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T QLR A+ GS + AA L +S VS+ V L ++LD PLF R G T
Sbjct 6 FTLDQLRILKAIASEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA 65
Query 61 GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD 118
G L S +IL L Q+T AIE + G L+ + AS + P +I LF + D
Sbjct 66 GHLLLSYGEKILTLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGLFRQQYPD 124
Query 119 LSVELSVHPTSRFRELICSRAVDIAI 144
+SV+L VH T R + + VD+AI
Sbjct 125 VSVQLQVHSTRRTSWSVSNGQVDLAI 150
>gi|293410518|ref|ZP_06654094.1| DNA-binding transcriptional regulator [Escherichia coli B354]
gi|291470986|gb|EFF13470.1| DNA-binding transcriptional regulator [Escherichia coli B354]
Length=293
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/266 (29%), Positives = 117/266 (44%), Gaps = 15/266 (5%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
+T QL ++ V++ GS A+ L LS + VS + L +L LF R G L
Sbjct 3 ITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEH 62
Query 61 GLRLASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDL 119
G L RA+ +L + AIE+ + +RI ASS + P +I + L
Sbjct 63 GRLLYPRALALL----EQAIEIEQLFREDNGAIRIYASSTIGNYILPAVIARYRHDYPQL 118
Query 120 SVELSVHPTSRFRELICSRAVDIAI--GPASESSIGSDGSIFLRPFLKYQIITVVAPNSP 177
+ELSV + + + VDI GP + I S+ P+L+ +++ APNSP
Sbjct 119 PIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISE------PWLEDELVVFAAPNSP 172
Query 178 LAAGIPMPALLRHQQWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEVMRVG 237
LA G L W+L GS EI L +P+ + + ++ A++ +R G
Sbjct 173 LARGPVTLEQLAAAPWILR-ERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHG 231
Query 238 GATLAIGFAVAKD-LAAGRLVHVTGP 262
+ V +D L AG L V P
Sbjct 232 LGISCLSRRVIEDQLQAGTLSEVAVP 257
>gi|291567755|dbj|BAI90027.1| LysR family transcriptional regulator [Arthrospira platensis
NIES-39]
Length=331
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/277 (28%), Positives = 130/277 (47%), Gaps = 21/277 (7%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T QLR A+ GS + AA L +S VS+ V L ++L+ PLF R G T
Sbjct 6 FTLDQLRILQAIASEGSFKRAADRLYVSQPAVSLQVQNLERQLNVPLFDRGGRRAQLTEA 65
Query 61 GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD 118
G L S ++L L Q+T AIE + G L+ + AS + P +I +F S+ D
Sbjct 66 GHLLLSYGEKVLSLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRSKYPD 124
Query 119 LSVELSVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPL 178
+SV+L VH T R + + +D+AI E S S+ + PF + ++ +++ + PL
Sbjct 125 VSVQLHVHSTRRTAWSVVNGQIDLAI-VGGEISPELAQSLEVVPFAEDELALIMSVSHPL 183
Query 179 AAGIPMPALLRHQ-----QWMLGPSAGSVDGEIATMLRGLAIPESQQRIFQSDAAALEEV 233
A ++ H Q++ + ++ I +L I S+ +I + + +++E +
Sbjct 184 AG----QEIIEHDDLYDLQFISLDAQSTIRKVIDQVLSRSGIDTSRLKI-EMELSSIEAI 238
Query 234 MRVGGATLAIGF----AVAKDLAAGRLVHVTGPGLDR 266
+ L + F A+ K+L G L P +DR
Sbjct 239 KNAVQSGLGVAFVSTSAIEKELQMGVL---QIPKIDR 272
>gi|298489729|ref|YP_003719906.1| LysR family transcriptional regulator ['Nostoc azollae' 0708]
gi|298231647|gb|ADI62783.1| transcriptional regulator, LysR family ['Nostoc azollae' 0708]
Length=337
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/146 (36%), Positives = 74/146 (51%), Gaps = 3/146 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T QLR A+ + GS + AA L +S VS+ V L ++LD PLF R G T
Sbjct 6 FTLDQLRILKAIAQEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA 65
Query 61 GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD 118
G L S +IL L Q+T AIE + G L+ + AS + P +I +F + D
Sbjct 66 GHLLLSYGEKILSLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPRMIGMFRQKYPD 124
Query 119 LSVELSVHPTSRFRELICSRAVDIAI 144
++V+L VH T R + + VD+AI
Sbjct 125 VAVQLHVHSTRRTAWSVANGQVDLAI 150
>gi|255033957|ref|YP_003084578.1| LysR family transcriptional regulator [Dyadobacter fermentans
DSM 18053]
gi|254946713|gb|ACT91413.1| transcriptional regulator, LysR family [Dyadobacter fermentans
DSM 18053]
Length=297
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/292 (26%), Positives = 134/292 (46%), Gaps = 19/292 (6%)
Query 5 QLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPGGLRL 64
+L+ + V R S AAAEL ++ V+ H+ L +L LF R+GA ++ TP G L
Sbjct 6 RLQVFQTVARRLSFTKAAAELFITQPAVTKHIHELESQLKTKLFERSGARISLTPAGDIL 65
Query 65 ASRAVEILGLQQQTAIEVTEAAHGRR-LLRIAASSAFAEHAAPGLIELFSSRADDLSVEL 123
A +I + + E+ + LR+ AS+ A++ P ++ F + ++ V L
Sbjct 66 LHHAEQIFDIYRNLEFEINSLSQRNSGKLRLGASTTAAQYILPPILAAFHRKFHNIEVTL 125
Query 124 SVHPTSRFRELICSRAVDIAIGPASESSIGSDGSIFLRPFLKYQIITVVAPNSPLAA-GI 182
+ T + + +D+ + + +I FL +I+ V +PLAA G+
Sbjct 126 TTKNTEEIEHALQHKEIDLGVIEG----YSKNAAIKYTEFLNDEIVLVANSKNPLAATGV 181
Query 183 PMPALLRHQQWML-GPSAGSVDGEIATMLR----GLAIPESQQRIFQSDAAALEEVMRVG 237
LR +L P +G+++ IA L+ GL + ++ S++ L +
Sbjct 182 VDAGQLRQIPLLLREPGSGTLEV-IAHALKSIGLGLGDLNVEMQLSSSESMKLYILHSDS 240
Query 238 GATLAIGFAVAKDLAAG--RLVHVTGPGLDRAGEWCVATLAPSARQPAVSEL 287
A +++ AV K+L + R+V V G +DR + TL +Q A+ EL
Sbjct 241 MAFISVH-AVLKELQSKECRIVDVEGLSIDR--HFHFTTL--HGQQEALPEL 287
>gi|209526768|ref|ZP_03275290.1| transcriptional regulator, LysR family [Arthrospira maxima CS-328]
gi|209492812|gb|EDZ93145.1| transcriptional regulator, LysR family [Arthrospira maxima CS-328]
Length=312
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/146 (35%), Positives = 74/146 (51%), Gaps = 3/146 (2%)
Query 1 MTPAQLRAYSAVVRLGSVRAAAAELGLSDAGVSMHVAALRKELDDPLFTRTGAGLAFTPG 60
T QLR A+ GS + AA L +S +S+ V L ++L+ PLF R G T
Sbjct 6 FTLDQLRILKAIASEGSFKRAADSLYVSQPAISLQVQNLERQLNVPLFDRAGRRAKLTEA 65
Query 61 GLRLASRAVEILGLQQQT--AIEVTEAAHGRRLLRIAASSAFAEHAAPGLIELFSSRADD 118
G L S +IL L Q+T AIE + G L+ + AS + PG+I +F + D
Sbjct 66 GHLLISYGEKILSLCQETCRAIEDLQNLQGGTLI-VGASQTTGTYLLPGMIGMFRQKYPD 124
Query 119 LSVELSVHPTSRFRELICSRAVDIAI 144
++V+L VH T R + + +D+AI
Sbjct 125 VAVQLHVHSTRRTAWSVANGQIDLAI 150
Lambda K H
0.321 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 564737661852
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40