BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0378
Length=73
Score E
Sequences producing significant alignments: (Bits) Value
gi|254230738|ref|ZP_04924065.1| conserved hypothetical glycine r... 120 5e-26
gi|308231535|ref|ZP_07412809.2| hypothetical protein TMAG_01637 ... 120 6e-26
gi|15607519|ref|NP_214892.1| glycine rich protein [Mycobacterium... 119 1e-25
gi|340625408|ref|YP_004743860.1| hypothetical protein MCAN_03791... 119 1e-25
>gi|254230738|ref|ZP_04924065.1| conserved hypothetical glycine rich protein [Mycobacterium tuberculosis
C]
gi|254549321|ref|ZP_05139768.1| hypothetical protein Mtube_02478 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289748863|ref|ZP_06508241.1| conserved glycine rich protein [Mycobacterium tuberculosis T92]
gi|294995135|ref|ZP_06800826.1| hypothetical protein Mtub2_11622 [Mycobacterium tuberculosis
210]
gi|124599797|gb|EAY58807.1| conserved hypothetical glycine rich protein [Mycobacterium tuberculosis
C]
gi|289689450|gb|EFD56879.1| conserved glycine rich protein [Mycobacterium tuberculosis T92]
Length=75
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 60
VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS
Sbjct 3 VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 62
Query 61 GERGAVGKPGAPG 73
GERGAVGKPGAPG
Sbjct 63 GERGAVGKPGAPG 75
>gi|308231535|ref|ZP_07412809.2| hypothetical protein TMAG_01637 [Mycobacterium tuberculosis SUMu001]
gi|308369378|ref|ZP_07417556.2| hypothetical protein TMBG_03609 [Mycobacterium tuberculosis SUMu002]
gi|308370388|ref|ZP_07421328.2| hypothetical protein TMCG_03063 [Mycobacterium tuberculosis SUMu003]
20 more sequence titles
Length=74
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 60
VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS
Sbjct 2 VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 61
Query 61 GERGAVGKPGAPG 73
GERGAVGKPGAPG
Sbjct 62 GERGAVGKPGAPG 74
>gi|15607519|ref|NP_214892.1| glycine rich protein [Mycobacterium tuberculosis H37Rv]
gi|31791555|ref|NP_854048.1| glycine rich protein [Mycobacterium bovis AF2122/97]
gi|121636291|ref|YP_976514.1| hypothetical protein BCG_0416 [Mycobacterium bovis BCG str. Pasteur
1173P2]
31 more sequence titles
Length=73
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 60
+SGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS
Sbjct 1 MSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 60
Query 61 GERGAVGKPGAPG 73
GERGAVGKPGAPG
Sbjct 61 GERGAVGKPGAPG 73
>gi|340625408|ref|YP_004743860.1| hypothetical protein MCAN_03791 [Mycobacterium canettii CIPT
140010059]
gi|340003598|emb|CCC42719.1| conserved hypothetical glycine rich protein [Mycobacterium canettii
CIPT 140010059]
Length=79
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 VSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 60
+SGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS
Sbjct 1 MSGRWEAGNADGNGGSAGLIGSGGAGGDGGSGGATGAGGEGGDAGASGSINGNAGDPGNS 60
Query 61 GERGAVGKPGAPG 73
GERGAVGKPGAPG
Sbjct 61 GERGAVGKPGAPG 73
Lambda K H
0.301 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131942442484
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40