BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0387c Length=244 Score E Sequences producing significant alignments: (Bits) Value gi|15607528|ref|NP_214901.1| PPE family protein [Mycobacterium t... 453 8e-126 gi|340625418|ref|YP_004743870.1| hypothetical protein MCAN_03891... 451 6e-125 gi|254363350|ref|ZP_04979396.1| conserved hypothetical protein [... 335 2e-90 gi|339293441|gb|AEJ45552.1| PPE family protein [Mycobacterium tu... 320 8e-86 gi|121636300|ref|YP_976523.1| PPE family protein [Mycobacterium ... 319 2e-85 gi|31791564|ref|NP_854057.1| PPE family protein [Mycobacterium b... 319 2e-85 gi|15839771|ref|NP_334808.1| PPE family protein [Mycobacterium t... 319 2e-85 gi|289441766|ref|ZP_06431510.1| PPE domain-containing protein [M... 307 9e-82 gi|289445925|ref|ZP_06435669.1| PPE family protein [Mycobacteriu... 278 7e-73 gi|306801980|ref|ZP_07438648.1| putative PPE family protein [Myc... 277 1e-72 gi|167970800|ref|ZP_02553077.1| PPE family protein [Mycobacteriu... 276 2e-72 gi|306796123|ref|ZP_07434425.1| putative PPE family protein [Myc... 273 2e-71 gi|306774481|ref|ZP_07412818.1| hypothetical protein TMAG_01647 ... 272 3e-71 gi|306806194|ref|ZP_07442862.1| putative PPE family protein [Myc... 269 2e-70 gi|323721194|gb|EGB30255.1| PPE family protein [Mycobacterium tu... 268 6e-70 gi|306783015|ref|ZP_07421337.1| hypothetical protein TMCG_03071 ... 268 7e-70 gi|289744084|ref|ZP_06503462.1| PPE family protein [Mycobacteriu... 266 2e-69 gi|306966390|ref|ZP_07479051.1| putative PPE family protein [Myc... 266 2e-69 gi|289752416|ref|ZP_06511794.1| LOW QUALITY PROTEIN: PPE family ... 266 2e-69 gi|183980708|ref|YP_001848999.1| PPE family protein [Mycobacteri... 265 3e-69 gi|306791936|ref|ZP_07430238.1| putative PPE family protein [Myc... 254 6e-66 gi|240168848|ref|ZP_04747507.1| PPE family protein [Mycobacteriu... 254 9e-66 gi|289756455|ref|ZP_06515833.1| PPE family protein [Mycobacteriu... 246 2e-63 gi|289760499|ref|ZP_06519877.1| predicted protein [Mycobacterium... 237 1e-60 gi|298523862|ref|ZP_07011271.1| ppe family protein [Mycobacteriu... 232 3e-59 gi|289748872|ref|ZP_06508250.1| PPE family protein [Mycobacteriu... 116 2e-24 gi|306791935|ref|ZP_07430237.1| LOW QUALITY PROTEIN: hypothetica... 110 2e-22 gi|183984579|ref|YP_001852870.1| PPE family protein [Mycobacteri... 45.4 0.006 gi|118619580|ref|YP_907912.1| PPE family protein [Mycobacterium ... 44.7 0.011 gi|183981466|ref|YP_001849757.1| PPE family protein [Mycobacteri... 40.4 0.21 gi|183982547|ref|YP_001850838.1| PPE family protein [Mycobacteri... 38.1 1.2 gi|254363844|ref|ZP_04979890.1| PPE family protein [Mycobacteriu... 37.7 1.4 gi|340625926|ref|YP_004744378.1| PPE family protein [Mycobacteri... 37.7 1.4 gi|289446484|ref|ZP_06436228.1| PPE family protein [Mycobacteriu... 37.7 1.4 gi|254549895|ref|ZP_05140342.1| PPE family protein [Mycobacteriu... 37.7 1.4 gi|31792103|ref|NP_854596.1| PPE family protein [Mycobacterium b... 37.7 1.4 gi|339293924|gb|AEJ46035.1| PPE family protein [Mycobacterium tu... 37.7 1.5 gi|15840336|ref|NP_335373.1| PPE family protein [Mycobacterium t... 37.7 1.6 >gi|15607528|ref|NP_214901.1| PPE family protein [Mycobacterium tuberculosis H37Rv] gi|339630456|ref|YP_004722098.1| hypothetical protein MAF_03890 [Mycobacterium africanum GM041182] gi|2909508|emb|CAA17393.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|339329812|emb|CCC25461.1| conserved hypothetical protein [Mycobacterium africanum GM041182] Length=244 Score = 453 bits (1166), Expect = 8e-126, Method: Compositional matrix adjust. Identities = 243/244 (99%), Positives = 244/244 (100%), Gaps = 0/244 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 +SLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 1 MSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG Sbjct 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP Sbjct 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 Query 241 NANQ 244 NANQ Sbjct 241 NANQ 244 >gi|340625418|ref|YP_004743870.1| hypothetical protein MCAN_03891 [Mycobacterium canettii CIPT 140010059] gi|340003608|emb|CCC42729.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=244 Score = 451 bits (1159), Expect = 6e-125, Method: Compositional matrix adjust. Identities = 242/244 (99%), Positives = 243/244 (99%), Gaps = 0/244 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 +SLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 1 MSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTG SDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG Sbjct 121 AVRQVAAMFPGATPMYMTGGSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP Sbjct 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 Query 241 NANQ 244 NANQ Sbjct 241 NANQ 244 >gi|254363350|ref|ZP_04979396.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|134148864|gb|EBA40909.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] Length=443 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 241/244 (99%), Positives = 242/244 (99%), Gaps = 0/244 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 379 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAGPAATRPAAQQTPAVPAAAAGSAIPGLP GLPPGVVANLAATLAAI GATIIVVPPSP Sbjct 380 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPRGLPPGVVANLAATLAAISGATIIVVPPSP 439 Query 241 NANQ 244 +ANQ Sbjct 440 SANQ 443 >gi|339293441|gb|AEJ45552.1| PPE family protein [Mycobacterium tuberculosis CCDC5079] Length=419 Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 244/244 (100%), Positives = 244/244 (100%), Gaps = 0/244 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 176 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 235 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 236 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 295 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG Sbjct 296 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 355 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP Sbjct 356 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 415 Query 241 NANQ 244 NANQ Sbjct 416 NANQ 419 >gi|121636300|ref|YP_976523.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988772|ref|YP_002643459.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121491947|emb|CAL70410.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771885|dbj|BAH24691.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341600316|emb|CCC62986.1| PPE family protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=443 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 243/244 (99%), Positives = 243/244 (99%), Gaps = 0/244 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGL ARGGSAPTPAAAAPAGAG Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLTARGGSAPTPAAAAPAGAG 379 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP Sbjct 380 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 439 Query 241 NANQ 244 NANQ Sbjct 440 NANQ 443 >gi|31791564|ref|NP_854057.1| PPE family protein [Mycobacterium bovis AF2122/97] gi|31617150|emb|CAD93257.1| PPE FAMILY PROTEIN [Mycobacterium bovis AF2122/97] Length=443 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 244/244 (100%), Positives = 244/244 (100%), Gaps = 0/244 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 379 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP Sbjct 380 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 439 Query 241 NANQ 244 NANQ Sbjct 440 NANQ 443 >gi|15839771|ref|NP_334808.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|148660153|ref|YP_001281676.1| PPE family protein [Mycobacterium tuberculosis H37Ra] gi|148821583|ref|YP_001286337.1| PPE family protein [Mycobacterium tuberculosis F11] 17 more sequence titles Length=443 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 244/244 (100%), Positives = 244/244 (100%), Gaps = 0/244 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 379 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP Sbjct 380 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 439 Query 241 NANQ 244 NANQ Sbjct 440 NANQ 443 >gi|289441766|ref|ZP_06431510.1| PPE domain-containing protein [Mycobacterium tuberculosis T46] gi|289568300|ref|ZP_06448527.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289414685|gb|EFD11925.1| PPE domain-containing protein [Mycobacterium tuberculosis T46] gi|289542053|gb|EFD45702.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length=440 Score = 307 bits (787), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 232/244 (96%), Positives = 232/244 (96%), Gaps = 3/244 (1%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSA A A Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSA---PTPAAAAPA 376 Query 181 GAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 240 GAG A TRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP Sbjct 377 GAGGAGTRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSP 436 Query 241 NANQ 244 NANQ Sbjct 437 NANQ 440 >gi|289445925|ref|ZP_06435669.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] gi|289418883|gb|EFD16084.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] Length=444 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 191/254 (76%), Positives = 195/254 (77%), Gaps = 19/254 (7%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAG 180 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARG Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGAPRRPRLQPPRPEPA 379 Query 181 GAG------PAATRPAA----QQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPG 230 P + RPA ++ A +A GLP L PG Sbjct 380 EPARLPPGTPPSRRPAVPRGGRRVSHTWPTARSAARRGLP---------TLRRPWRRSPG 430 Query 231 ATIIVVPPSPNANQ 244 ATIIVVPPSPNANQ Sbjct 431 ATIIVVPPSPNANQ 444 >gi|306801980|ref|ZP_07438648.1| putative PPE family protein [Mycobacterium tuberculosis SUMu008] gi|308351237|gb|EFP40088.1| putative PPE family protein [Mycobacterium tuberculosis SUMu008] Length=351 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/152 (100%), Positives = 152/152 (100%), Gaps = 0/152 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAG 152 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAG Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAG 351 >gi|167970800|ref|ZP_02553077.1| PPE family protein [Mycobacterium tuberculosis H37Ra] Length=371 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 172/172 (100%), Positives = 172/172 (100%), Gaps = 0/172 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPA 172 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPA Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPA 371 >gi|306796123|ref|ZP_07434425.1| putative PPE family protein [Mycobacterium tuberculosis SUMu006] gi|308343401|gb|EFP32252.1| putative PPE family protein [Mycobacterium tuberculosis SUMu006] Length=348 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLA 149 AVRQVAAMFPGATPMYMTGSSDGSYAGLA Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLA 348 >gi|306774481|ref|ZP_07412818.1| hypothetical protein TMAG_01647 [Mycobacterium tuberculosis SUMu001] gi|308216834|gb|EFO76233.1| hypothetical protein TMAG_01647 [Mycobacterium tuberculosis SUMu001] Length=374 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 170/170 (100%), Positives = 170/170 (100%), Gaps = 0/170 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPT 170 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPT Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPT 369 >gi|306806194|ref|ZP_07442862.1| putative PPE family protein [Mycobacterium tuberculosis SUMu007] gi|308347209|gb|EFP36060.1| putative PPE family protein [Mycobacterium tuberculosis SUMu007] Length=346 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 147/147 (100%), Positives = 147/147 (100%), Gaps = 0/147 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAG 147 AVRQVAAMFPGATPMYMTGSSDGSYAG Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAG 346 >gi|323721194|gb|EGB30255.1| PPE family protein [Mycobacterium tuberculosis CDC1551A] Length=375 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 167/167 (100%), Positives = 167/167 (100%), Gaps = 0/167 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGS 167 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGS Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGS 366 >gi|306783015|ref|ZP_07421337.1| hypothetical protein TMCG_03071 [Mycobacterium tuberculosis SUMu003] gi|308332135|gb|EFP20986.1| hypothetical protein TMCG_03071 [Mycobacterium tuberculosis SUMu003] Length=387 Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 167/167 (100%), Positives = 167/167 (100%), Gaps = 0/167 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGS 167 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGS Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGS 366 >gi|289744084|ref|ZP_06503462.1| PPE family protein [Mycobacterium tuberculosis 02_1987] gi|289684612|gb|EFD52100.1| PPE family protein [Mycobacterium tuberculosis 02_1987] Length=390 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSY 145 AVRQVAAMFPGATPMYMTGSSDGSY Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSY 344 >gi|306966390|ref|ZP_07479051.1| putative PPE family protein [Mycobacterium tuberculosis SUMu009] gi|308355791|gb|EFP44642.1| putative PPE family protein [Mycobacterium tuberculosis SUMu009] Length=355 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTGSSDGSY 145 AVRQVAAMFPGATPMYMTGSSDGSY Sbjct 320 AVRQVAAMFPGATPMYMTGSSDGSY 344 >gi|289752416|ref|ZP_06511794.1| LOW QUALITY PROTEIN: PPE family protein [Mycobacterium tuberculosis EAS054] gi|289693003|gb|EFD60432.1| LOW QUALITY PROTEIN: PPE family protein [Mycobacterium tuberculosis EAS054] Length=244 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/153 (97%), Positives = 150/153 (99%), Gaps = 0/153 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 +SLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 1 MSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 Query 121 AVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGL 153 AVRQVAAMFPGATPMYMTGSSDG Y+G + AGL Sbjct 121 AVRQVAAMFPGATPMYMTGSSDGWYSGRSEAGL 153 >gi|183980708|ref|YP_001848999.1| PPE family protein [Mycobacterium marinum M] gi|183174034|gb|ACC39144.1| PPE family protein [Mycobacterium marinum M] Length=444 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 172/249 (70%), Positives = 191/249 (77%), Gaps = 6/249 (2%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 S+LP LQSFLP PF+AIPNP EDLD+LV AAV V+ G+LGVSA QLGE+YRHD+VDE + Sbjct 197 TSILPLLQSFLPAPFNAIPNPFEDLDLLVLAAVVVSLGALGVSAIQLGEVYRHDIVDEDE 256 Query 61 KAPHCPAESDQTPAGAAGDGDLPEV----GGRVTSPPQPPVAALTGYSANIGGLSVPHSW 116 AP C E D+ PA + D + G R+ SPP PPVAAL+GYSANIGGLSVP +W Sbjct 257 NAPLCGGEYDELPAAGLRNPDRDAITTPGGQRLASPPSPPVAALSGYSANIGGLSVPPAW 316 Query 117 NLPPAVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARG-GSAPTPAAAA 175 NLPPAVRQVAAMFPGATPMY+TG SDG Y G+AAAG+AG LAG AARG GSAP P A Sbjct 317 NLPPAVRQVAAMFPGATPMYLTGGSDGQYTGIAAAGIAGASLAGFAARGSGSAPAPTTGA 376 Query 176 PAGAGGAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIV 235 AGG G AA A TP+VPAAAA + IPGLP GLPPGVVANLAATLAAIPGATIIV Sbjct 377 -PSAGGGGAAAAARPAANTPSVPAAAAAANIPGLPSGLPPGVVANLAATLAAIPGATIIV 435 Query 236 VPPSPNANQ 244 VPP PNA Q Sbjct 436 VPPDPNAAQ 444 >gi|306791936|ref|ZP_07430238.1| putative PPE family protein [Mycobacterium tuberculosis SUMu005] gi|308339523|gb|EFP28374.1| putative PPE family protein [Mycobacterium tuberculosis SUMu005] Length=342 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPGATPMYMTG 139 AVRQVAAMFPGATPMYMTG Sbjct 320 AVRQVAAMFPGATPMYMTG 338 >gi|240168848|ref|ZP_04747507.1| PPE family protein [Mycobacterium kansasii ATCC 12478] Length=444 Score = 254 bits (648), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 169/249 (68%), Positives = 190/249 (77%), Gaps = 11/249 (4%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VS+LPTLQSFLPPP DA+PNP EDLD+LVAAAVAVAAGSL VS QL E+YRHD+VDE + Sbjct 198 VSVLPTLQSFLPPPLDALPNPFEDLDILVAAAVAVAAGSLAVSTVQLSEVYRHDMVDEYE 257 Query 61 KAPHCPAESDQTPAGAAGDGDLPEV-------GGRVTSPPQPPVAALTGYSANIGGLSVP 113 KAP CP E+++ P D +P GGR+T+PPQPP AL+G S NIGGLSVP Sbjct 258 KAPICPGEAEEGPTQGGPDSVIPGRPRPSTPGGGRLTTPPQPPTVALSGNSTNIGGLSVP 317 Query 114 HSWNLPPAVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARG-GSAPTPA 172 SW PPAVRQVAAMFPG TPM+MTG S+ YAG+AAAGLAGT LAGLA RG GS+P PA Sbjct 318 QSWMFPPAVRQVAAMFPGTTPMFMTGGSEDGYAGMAAAGLAGTSLAGLATRGSGSSPAPA 377 Query 173 AAAPAGAGGAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGAT 232 +P GGA A TP+VPAAAAG+ IPGLP GLPPGVVANLAATLAAIPGAT Sbjct 378 TPSPTAGGGAAAAT---RPAATPSVPAAAAGTNIPGLPSGLPPGVVANLAATLAAIPGAT 434 Query 233 IIVVPPSPN 241 IIVVPP+P Sbjct 435 IIVVPPNPT 443 >gi|289756455|ref|ZP_06515833.1| PPE family protein [Mycobacterium tuberculosis T85] gi|289712019|gb|EFD76031.1| PPE family protein [Mycobacterium tuberculosis T85] Length=137 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 123/124 (99%), Positives = 124/124 (100%), Gaps = 0/124 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 +SLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 1 MSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 Query 121 AVRQ 124 AVRQ Sbjct 121 AVRQ 124 >gi|289760499|ref|ZP_06519877.1| predicted protein [Mycobacterium tuberculosis GM 1503] gi|289708005|gb|EFD72021.1| predicted protein [Mycobacterium tuberculosis GM 1503] Length=133 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%) Query 112 VPHSWNLPPAVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTP 171 +PHSWNLPPAVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTP Sbjct 1 MPHSWNLPPAVRQVAAMFPGATPMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTP 60 Query 172 AAAAPAGAGGAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGA 231 AAAAPAGAGGAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGA Sbjct 61 AAAAPAGAGGAGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGA 120 Query 232 TIIVVPPSPNANQ 244 TIIVVPPSPNANQ Sbjct 121 TIIVVPPSPNANQ 133 >gi|298523862|ref|ZP_07011271.1| ppe family protein [Mycobacterium tuberculosis 94_M4241A] gi|298493656|gb|EFI28950.1| ppe family protein [Mycobacterium tuberculosis 94_M4241A] Length=336 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 129/131 (99%), Positives = 129/131 (99%), Gaps = 0/131 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 120 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP Sbjct 260 KAPHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPP 319 Query 121 AVRQVAAMFPG 131 RQVAAMFPG Sbjct 320 GGRQVAAMFPG 330 >gi|289748872|ref|ZP_06508250.1| PPE family protein [Mycobacterium tuberculosis T92] gi|289689459|gb|EFD56888.1| PPE family protein [Mycobacterium tuberculosis T92] Length=277 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/78 (90%), Positives = 71/78 (92%), Gaps = 0/78 (0%) Query 1 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 60 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ Sbjct 200 VSLLPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQ 259 Query 61 KAPHCPAESDQTPAGAAG 78 K PHCPAES+Q G Sbjct 260 KVPHCPAESEQDTRWGRG 277 >gi|306791935|ref|ZP_07430237.1| LOW QUALITY PROTEIN: hypothetical protein TMEG_02960 [Mycobacterium tuberculosis SUMu005] gi|308339592|gb|EFP28443.1| LOW QUALITY PROTEIN: hypothetical protein TMEG_02960 [Mycobacterium tuberculosis SUMu005] Length=63 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/63 (100%), Positives = 63/63 (100%), Gaps = 0/63 (0%) Query 182 AGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSPN 241 AGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSPN Sbjct 1 AGPAATRPAAQQTPAVPAAAAGSAIPGLPPGLPPGVVANLAATLAAIPGATIIVVPPSPN 60 Query 242 ANQ 244 ANQ Sbjct 61 ANQ 63 >gi|183984579|ref|YP_001852870.1| PPE family protein [Mycobacterium marinum M] gi|183177905|gb|ACC43015.1| PPE family protein [Mycobacterium marinum M] Length=422 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/167 (31%), Positives = 74/167 (45%), Gaps = 9/167 (5%) Query 4 LPTLQSFLPPPFDAIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVV-DEAQKA 62 +PT P +IP P+ +LD+L A A SL +SA + + D AQ Sbjct 221 IPTGSDLAAPAAISIPTPVGELDLLAAYIAVAATASLSLSAVNTARPWSYSTNNDHAQPN 280 Query 63 PHCPAESDQTPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNL-PPA 121 A + G + P+ V++P P +A G++A +G LSVPHSW + P Sbjct 281 GGGVAPTQGNTLGT----ERPDAEVLVSAPNIVPTSAFVGHAALVGALSVPHSWAMAAPE 336 Query 122 VRQVAAMFPGATPMYMTGSSDGSYAGLAAAG-LAGTGLAGLAARGGS 167 +R P A + D G+A G L+G LA LA RG + Sbjct 337 IRLAVESLPSAGGLSAPAGPD--IGGMAPTGLLSGMALASLAGRGAT 381 >gi|118619580|ref|YP_907912.1| PPE family protein [Mycobacterium ulcerans Agy99] gi|118571690|gb|ABL06441.1| PPE family protein [Mycobacterium ulcerans Agy99] Length=423 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/157 (30%), Positives = 69/157 (44%), Gaps = 13/157 (8%) Query 17 AIPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVV-DEAQKAPHCPAESDQTPAG 75 +IP P+ +LD+L A A SL +SA + + D AQ A + G Sbjct 235 SIPTPVGELDLLAAYIAVAATASLSLSAVNTARPWSYSTNNDHAQPNGGGVAPTQGNTLG 294 Query 76 AAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNL-PPAVRQVAAMFPGATP 134 + P+ V++P P +A G++A +G LSVPHSW + P +R P A Sbjct 295 T----ERPDAEVLVSAPNVVPTSAFVGHAALVGALSVPHSWAMAAPEIRLAVESLPSAGG 350 Query 135 MYMTGSSD-------GSYAGLAAAGLAGTGLAGLAAR 164 + D G +G+A A LAG G G +R Sbjct 351 LSAPAGPDMGGVAPTGLLSGMALASLAGRGATGAGSR 387 >gi|183981466|ref|YP_001849757.1| PPE family protein [Mycobacterium marinum M] gi|183174792|gb|ACC39902.1| PPE family protein [Mycobacterium marinum M] Length=416 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 57/204 (28%), Positives = 86/204 (43%), Gaps = 34/204 (16%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQKAPHCPAESD-----QT 72 IP PI +LD + +A+GS+ +S + +R + E+ + T Sbjct 236 IPTPIGELDAIGLYIAVIASGSIALS---ITNTFRPWNLTESSGHGGGLGPTHGGLLGST 292 Query 73 PAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNL-PPAVRQVAAMFPG 131 A + D D GG +P ++A G++A +G LSVPH+W L P ++ P Sbjct 293 TAESGADSD----GGAGAAP----MSAAVGHAALVGALSVPHNWTLAAPEIKLAVEALPS 344 Query 132 AT----PMYMTGSSDGSYAGLAAAGLAGTGLAGLAARGGSAPTPAAAAPAGAGGAGPAAT 187 + P + G G +G+A A LAG G+ G+ TP+ A G G Sbjct 345 TSVSSGPPDLGGVPTGLLSGMAVASLAGRGI-------GATGTPSVRDAAPEEGEGQPKR 397 Query 188 RPAAQQTPAVPAAAAGSAIPGLPP 211 RP + P P A GLPP Sbjct 398 RPTVVKVPKPPPAD------GLPP 415 >gi|183982547|ref|YP_001850838.1| PPE family protein [Mycobacterium marinum M] gi|183175873|gb|ACC40983.1| PPE family protein [Mycobacterium marinum M] Length=404 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 38/130 (30%), Positives = 51/130 (40%), Gaps = 32/130 (24%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEAQKAPHCPAESDQTPAGAA 77 +P PI +LDVL AVA GS+ +S + + D A Sbjct 247 VPTPIGELDVLALYIAAVATGSIALSVTNTFRPWNYYGSD------------------AH 288 Query 78 GDGDLPEVGGRVTSPPQP------------PVAALTGYSANIGGLSVPHSWNL--PPAVR 123 G G P GG ++S + PV G++A +G LSVPH W P Sbjct 289 GGGSNPTHGGAISSTRKEDATDWGPFGGAAPVTVGVGHAALVGSLSVPHGWTTAAPEIQL 348 Query 124 QVAAMFPGAT 133 V AM GA+ Sbjct 349 AVEAMRTGAS 358 >gi|254363844|ref|ZP_04979890.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem] gi|134149358|gb|EBA41403.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem] Length=423 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/154 (29%), Positives = 65/154 (43%), Gaps = 24/154 (15%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEA------QKAPHCPAESDQ 71 IP PI +LDV+ ++A GS+ ++ + + A Q P A + Sbjct 246 IPTPIGELDVIALYIASIATGSIALAITNTARPWHIGLYGNAGGLGPTQGHPLSSATDEP 305 Query 72 TPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPPAVRQVAAMFPG 131 P G PV+A G++A +G LSVPHSW Q+A Sbjct 306 EPHWGPFGG-------------AAPVSAGVGHAALVGALSVPHSWTTAAPEIQLAVQ--- 349 Query 132 ATPMYMT--GSSDGSYAGLAAAGLAGTGLAGLAA 163 ATP + + G+ + G+ A L+G LA LAA Sbjct 350 ATPTFSSSAGADPTALNGMPAGLLSGMALASLAA 383 >gi|340625926|ref|YP_004744378.1| PPE family protein [Mycobacterium canettii CIPT 140010059] gi|340004116|emb|CCC43253.1| PPE family protein [Mycobacterium canettii CIPT 140010059] Length=423 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/154 (29%), Positives = 65/154 (43%), Gaps = 24/154 (15%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEA------QKAPHCPAESDQ 71 IP PI +LDV+ ++A GS+ ++ + + A Q P A + Sbjct 246 IPTPIGELDVIALYIASIATGSIALAITNTARPWHIGLYGNAGGLGPTQGHPLSSATDEP 305 Query 72 TPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPPAVRQVAAMFPG 131 P G PV+A G++A +G LSVPHSW Q+A Sbjct 306 EPHWGPFGG-------------AAPVSAGVGHAALVGALSVPHSWTTAAPEIQLAVQ--- 349 Query 132 ATPMYMT--GSSDGSYAGLAAAGLAGTGLAGLAA 163 ATP + + G+ + G+ A L+G LA LAA Sbjct 350 ATPTFSSSAGADPTALNGMPAGLLSGMALASLAA 383 >gi|289446484|ref|ZP_06436228.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] gi|289419442|gb|EFD16643.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] Length=423 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/154 (29%), Positives = 65/154 (43%), Gaps = 24/154 (15%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEA------QKAPHCPAESDQ 71 IP PI +LDV+ ++A GS+ ++ + + A Q P A + Sbjct 246 IPTPIGELDVIALYIASIATGSIALAITNTARPWHIGLYGNAGGLGPMQGHPLSSATDEP 305 Query 72 TPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPPAVRQVAAMFPG 131 P G PV+A G++A +G LSVPHSW Q+A Sbjct 306 EPHWGPFGG-------------AAPVSAGVGHAALVGALSVPHSWTTAAPEIQLAVQ--- 349 Query 132 ATPMYMT--GSSDGSYAGLAAAGLAGTGLAGLAA 163 ATP + + G+ + G+ A L+G LA LAA Sbjct 350 ATPTFSSSAGADPTALNGMPAGLLSGMALASLAA 383 >gi|254549895|ref|ZP_05140342.1| PPE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294996398|ref|ZP_06802089.1| PPE family protein [Mycobacterium tuberculosis 210] gi|297633436|ref|ZP_06951216.1| PPE family protein [Mycobacterium tuberculosis KZN 4207] gi|297730421|ref|ZP_06959539.1| PPE family protein [Mycobacterium tuberculosis KZN R506] gi|313657748|ref|ZP_07814628.1| PPE family protein [Mycobacterium tuberculosis KZN V2475] gi|323720626|gb|EGB29704.1| PPE family protein [Mycobacterium tuberculosis CDC1551A] Length=409 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/154 (29%), Positives = 65/154 (43%), Gaps = 24/154 (15%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEA------QKAPHCPAESDQ 71 IP PI +LDV+ ++A GS+ ++ + + A Q P A + Sbjct 232 IPTPIGELDVIALYIASIATGSIALAITNTARPWHIGLYGNAGGLGPTQGHPLSSATDEP 291 Query 72 TPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPPAVRQVAAMFPG 131 P G PV+A G++A +G LSVPHSW Q+A Sbjct 292 EPHWGPFGG-------------AAPVSAGVGHAALVGALSVPHSWTTAAPEIQLAVQ--- 335 Query 132 ATPMYMT--GSSDGSYAGLAAAGLAGTGLAGLAA 163 ATP + + G+ + G+ A L+G LA LAA Sbjct 336 ATPTFSSSAGADPTALNGMPAGLLSGMALASLAA 369 >gi|31792103|ref|NP_854596.1| PPE family protein [Mycobacterium bovis AF2122/97] gi|57116795|ref|YP_177765.1| PPE family protein [Mycobacterium tuberculosis H37Rv] gi|121636838|ref|YP_977061.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 59 more sequence titles Length=423 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/154 (29%), Positives = 65/154 (43%), Gaps = 24/154 (15%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEA------QKAPHCPAESDQ 71 IP PI +LDV+ ++A GS+ ++ + + A Q P A + Sbjct 246 IPTPIGELDVIALYIASIATGSIALAITNTARPWHIGLYGNAGGLGPTQGHPLSSATDEP 305 Query 72 TPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPPAVRQVAAMFPG 131 P G PV+A G++A +G LSVPHSW Q+A Sbjct 306 EPHWGPFGG-------------AAPVSAGVGHAALVGALSVPHSWTTAAPEIQLAVQ--- 349 Query 132 ATPMYMT--GSSDGSYAGLAAAGLAGTGLAGLAA 163 ATP + + G+ + G+ A L+G LA LAA Sbjct 350 ATPTFSSSAGADPTALNGMPAGLLSGMALASLAA 383 >gi|339293924|gb|AEJ46035.1| PPE family protein [Mycobacterium tuberculosis CCDC5079] Length=423 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 44/154 (29%), Positives = 65/154 (43%), Gaps = 24/154 (15%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEA------QKAPHCPAESDQ 71 IP PI +LDV+ ++A GS+ ++ + + A Q P A + Sbjct 246 IPTPIGELDVIALYIASIATGSIALAITNTARPWHIGLYGNAGGLGPTQGHPLSSATDEP 305 Query 72 TPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPPAVRQVAAMFPG 131 P G PV+A G++A +G LSVPHSW Q+A Sbjct 306 EPHWGPFGG-------------AAPVSAGVGHAALVGALSVPHSWTTAAPEIQLAVQ--- 349 Query 132 ATPMYMT--GSSDGSYAGLAAAGLAGTGLAGLAA 163 ATP + + G+ + G+ A L+G LA LAA Sbjct 350 ATPTFSSSAGADPTALNGMPAGLLSGMALASLAA 383 >gi|15840336|ref|NP_335373.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|254231223|ref|ZP_04924550.1| PPE family protein [Mycobacterium tuberculosis C] gi|13880500|gb|AAK45187.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|124600282|gb|EAY59292.1| PPE family protein [Mycobacterium tuberculosis C] Length=426 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 44/154 (29%), Positives = 65/154 (43%), Gaps = 24/154 (15%) Query 18 IPNPIEDLDVLVAAAVAVAAGSLGVSAAQLGEIYRHDVVDEA------QKAPHCPAESDQ 71 IP PI +LDV+ ++A GS+ ++ + + A Q P A + Sbjct 249 IPTPIGELDVIALYIASIATGSIALAITNTARPWHIGLYGNAGGLGPTQGHPLSSATDEP 308 Query 72 TPAGAAGDGDLPEVGGRVTSPPQPPVAALTGYSANIGGLSVPHSWNLPPAVRQVAAMFPG 131 P G PV+A G++A +G LSVPHSW Q+A Sbjct 309 EPHWGPFGG-------------AAPVSAGVGHAALVGALSVPHSWTTAAPEIQLAVQ--- 352 Query 132 ATPMYMT--GSSDGSYAGLAAAGLAGTGLAGLAA 163 ATP + + G+ + G+ A L+G LA LAA Sbjct 353 ATPTFSSSAGADPTALNGMPAGLLSGMALASLAA 386 Lambda K H 0.312 0.131 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 340053351120 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40