BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0394c

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308231541|ref|ZP_07412825.2|  secreted protein [Mycobacterium ...   476    1e-132
gi|15607535|ref|NP_214908.1|  hypothetical protein Rv0394c [Mycob...   474    3e-132
gi|308369381|ref|ZP_07417571.2|  secreted protein [Mycobacterium ...   452    2e-125
gi|134288138|ref|YP_001110302.1|  SNF2-related protein [Burkholde...  44.3    0.017 
gi|300113714|ref|YP_003760289.1|  hypothetical protein Nwat_1026 ...  40.4    0.22  
gi|324499851|gb|ADY39946.1|  Activating signal cointegrator 1 com...  37.7    1.5   
gi|77165745|ref|YP_344270.1|  DNA topoisomerase IV subunit A [Nit...  35.4    6.5   
gi|327287208|ref|XP_003228321.1|  PREDICTED: LOW QUALITY PROTEIN:...  35.4    7.0   
gi|344289761|ref|XP_003416609.1|  PREDICTED: homeobox protein cut...  35.4    7.6   
gi|119944788|ref|YP_942468.1|  urocanate hydratase [Psychromonas ...  35.0    8.4   
gi|14346042|gb|AAK59986.1|  CCAAT displacement protein CDP [Mus m...  35.0    8.5   
gi|281337674|gb|EFB13258.1|  hypothetical protein PANDA_015425 [A...  35.0    8.8   
gi|297288071|ref|XP_001114534.2|  PREDICTED: cut-like 1 [Macaca m...  35.0    8.9   
gi|110835729|ref|NP_034116.3|  protein CASP isoform a [Mus musculus]  35.0    8.9   
gi|60688551|gb|AAH90847.1|  Cut-like homeobox 1 [Mus musculus]        35.0    8.9   
gi|301780872|ref|XP_002925852.1|  PREDICTED: homeobox protein cut...  35.0    9.2   
gi|148277064|ref|NP_853530.2|  protein CASP isoform a [Homo sapie...  35.0    9.2   
gi|321400107|ref|NP_001189472.1|  protein CASP isoform d [Homo sa...  35.0    9.2   


>gi|308231541|ref|ZP_07412825.2| secreted protein [Mycobacterium tuberculosis SUMu001]
 gi|308377413|ref|ZP_07479058.2| secreted protein [Mycobacterium tuberculosis SUMu009]
 gi|308379769|ref|ZP_07487489.2| secreted protein [Mycobacterium tuberculosis SUMu011]
 gi|308216840|gb|EFO76239.1| secreted protein [Mycobacterium tuberculosis SUMu001]
 gi|308355797|gb|EFP44648.1| secreted protein [Mycobacterium tuberculosis SUMu009]
 gi|308363659|gb|EFP52510.1| secreted protein [Mycobacterium tuberculosis SUMu011]
Length=293

 Score =  476 bits (1225),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 239/239 (100%), Positives = 239/239 (100%), Gaps = 0/239 (0%)

Query  1    MTEPRPVFAVVISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLS  60
            MTEPRPVFAVVISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLS
Sbjct  55   MTEPRPVFAVVISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLS  114

Query  61   RIDKNPELEPLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEP  120
            RIDKNPELEPLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEP
Sbjct  115  RIDKNPELEPLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEP  174

Query  121  VHIHALVRLAKAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNG  180
            VHIHALVRLAKAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNG
Sbjct  175  VHIHALVRLAKAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNG  234

Query  181  TGTPAEESGHILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR  239
            TGTPAEESGHILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR
Sbjct  235  TGTPAEESGHILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR  293


>gi|15607535|ref|NP_214908.1| hypothetical protein Rv0394c [Mycobacterium tuberculosis H37Rv]
 gi|15839776|ref|NP_334813.1| hypothetical protein MT0404.1 [Mycobacterium tuberculosis CDC1551]
 gi|31791570|ref|NP_854063.1| hypothetical protein Mb0400c [Mycobacterium bovis AF2122/97]
 52 more sequence titles
 
gi|121636306|ref|YP_976529.1| putative secreted protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148660159|ref|YP_001281682.1| putative secreted protein [Mycobacterium tuberculosis H37Ra]
 gi|148821589|ref|YP_001286343.1| hypothetical protein TBFG_10398 [Mycobacterium tuberculosis F11]
 gi|167970793|ref|ZP_02553070.1| hypothetical secreted protein [Mycobacterium tuberculosis H37Ra]
 gi|224988778|ref|YP_002643465.1| putative secreted protein [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797316|ref|YP_003030317.1| secreted protein [Mycobacterium tuberculosis KZN 1435]
 gi|254363355|ref|ZP_04979401.1| hypothetical secreted protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254549336|ref|ZP_05139783.1| secreted protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289441772|ref|ZP_06431516.1| secreted protein [Mycobacterium tuberculosis T46]
 gi|289445931|ref|ZP_06435675.1| secreted protein [Mycobacterium tuberculosis CPHL_A]
 gi|289552642|ref|ZP_06441852.1| secreted protein [Mycobacterium tuberculosis KZN 605]
 gi|289568306|ref|ZP_06448533.1| secreted protein [Mycobacterium tuberculosis T17]
 gi|289572978|ref|ZP_06453205.1| secreted protein [Mycobacterium tuberculosis K85]
 gi|289744090|ref|ZP_06503468.1| hypothetical secreted protein [Mycobacterium tuberculosis 02_1987]
 gi|289748880|ref|ZP_06508258.1| secreted protein [Mycobacterium tuberculosis T92]
 gi|289752423|ref|ZP_06511801.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289756462|ref|ZP_06515840.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289760507|ref|ZP_06519885.1| secreted protein [Mycobacterium tuberculosis GM 1503]
 gi|294995150|ref|ZP_06800841.1| secreted protein [Mycobacterium tuberculosis 210]
 gi|297632876|ref|ZP_06950656.1| secreted protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729851|ref|ZP_06958969.1| secreted protein [Mycobacterium tuberculosis KZN R506]
 gi|298523868|ref|ZP_07011277.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306970592|ref|ZP_07483253.1| secreted protein [Mycobacterium tuberculosis SUMu010]
 gi|313657180|ref|ZP_07814060.1| secreted protein [Mycobacterium tuberculosis KZN V2475]
 gi|339630463|ref|YP_004722105.1| hypothetical protein MAF_03960 [Mycobacterium africanum GM041182]
 gi|1817709|emb|CAB06600.1| POSSIBLE SECRETED PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13879905|gb|AAK44627.1| hypothetical protein MT0404.1 [Mycobacterium tuberculosis CDC1551]
 gi|31617156|emb|CAD93263.1| POSSIBLE SECRETED PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491953|emb|CAL70416.1| Possible secreted protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|134148869|gb|EBA40914.1| hypothetical secreted protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504311|gb|ABQ72120.1| putative secreted protein [Mycobacterium tuberculosis H37Ra]
 gi|148720116|gb|ABR04741.1| hypothetical secreted protein [Mycobacterium tuberculosis F11]
 gi|224771891|dbj|BAH24697.1| putative secreted protein [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253318819|gb|ACT23422.1| secreted protein [Mycobacterium tuberculosis KZN 1435]
 gi|289414691|gb|EFD11931.1| secreted protein [Mycobacterium tuberculosis T46]
 gi|289418889|gb|EFD16090.1| secreted protein [Mycobacterium tuberculosis CPHL_A]
 gi|289437274|gb|EFD19767.1| secreted protein [Mycobacterium tuberculosis KZN 605]
 gi|289537409|gb|EFD41987.1| secreted protein [Mycobacterium tuberculosis K85]
 gi|289542059|gb|EFD45708.1| secreted protein [Mycobacterium tuberculosis T17]
 gi|289684618|gb|EFD52106.1| hypothetical secreted protein [Mycobacterium tuberculosis 02_1987]
 gi|289689467|gb|EFD56896.1| secreted protein [Mycobacterium tuberculosis T92]
 gi|289693010|gb|EFD60439.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708013|gb|EFD72029.1| secreted protein [Mycobacterium tuberculosis GM 1503]
 gi|289712026|gb|EFD76038.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298493662|gb|EFI28956.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308359716|gb|EFP48567.1| secreted protein [Mycobacterium tuberculosis SUMu010]
 gi|323721200|gb|EGB30261.1| secreted protein [Mycobacterium tuberculosis CDC1551A]
 gi|326902219|gb|EGE49152.1| secreted protein [Mycobacterium tuberculosis W-148]
 gi|328457103|gb|AEB02526.1| secreted protein [Mycobacterium tuberculosis KZN 4207]
 gi|339329819|emb|CCC25468.1| putative secreted protein [Mycobacterium africanum GM041182]
 gi|341600322|emb|CCC62992.1| possible secreted protein [Mycobacterium bovis BCG str. Moreau 
RDJ]
 gi|344218210|gb|AEM98840.1| hypothetical protein MTCTRI2_0397 [Mycobacterium tuberculosis 
CTRI-2]
Length=239

 Score =  474 bits (1221),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 239/239 (100%), Positives = 239/239 (100%), Gaps = 0/239 (0%)

Query  1    MTEPRPVFAVVISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLS  60
            MTEPRPVFAVVISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLS
Sbjct  1    MTEPRPVFAVVISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLS  60

Query  61   RIDKNPELEPLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEP  120
            RIDKNPELEPLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEP
Sbjct  61   RIDKNPELEPLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEP  120

Query  121  VHIHALVRLAKAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNG  180
            VHIHALVRLAKAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNG
Sbjct  121  VHIHALVRLAKAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNG  180

Query  181  TGTPAEESGHILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR  239
            TGTPAEESGHILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR
Sbjct  181  TGTPAEESGHILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR  239


>gi|308369381|ref|ZP_07417571.2| secreted protein [Mycobacterium tuberculosis SUMu002]
 gi|308370392|ref|ZP_07421344.2| secreted protein [Mycobacterium tuberculosis SUMu003]
 gi|308371660|ref|ZP_07425713.2| secreted protein [Mycobacterium tuberculosis SUMu004]
 15 more sequence titles
 
gi|308372879|ref|ZP_07430245.2| secreted protein [Mycobacterium tuberculosis SUMu005]
 gi|308373990|ref|ZP_07434432.2| secreted protein [Mycobacterium tuberculosis SUMu006]
 gi|308375147|ref|ZP_07442869.2| secreted protein [Mycobacterium tuberculosis SUMu007]
 gi|308376381|ref|ZP_07438655.2| secreted protein [Mycobacterium tuberculosis SUMu008]
 gi|308395381|ref|ZP_07491989.2| secreted protein [Mycobacterium tuberculosis SUMu012]
 gi|308327787|gb|EFP16638.1| secreted protein [Mycobacterium tuberculosis SUMu002]
 gi|308332141|gb|EFP20992.1| secreted protein [Mycobacterium tuberculosis SUMu003]
 gi|308335925|gb|EFP24776.1| secreted protein [Mycobacterium tuberculosis SUMu004]
 gi|308339529|gb|EFP28380.1| secreted protein [Mycobacterium tuberculosis SUMu005]
 gi|308343406|gb|EFP32257.1| secreted protein [Mycobacterium tuberculosis SUMu006]
 gi|308347215|gb|EFP36066.1| secreted protein [Mycobacterium tuberculosis SUMu007]
 gi|308351243|gb|EFP40094.1| secreted protein [Mycobacterium tuberculosis SUMu008]
 gi|308367401|gb|EFP56252.1| secreted protein [Mycobacterium tuberculosis SUMu012]
 gi|339293447|gb|AEJ45558.1| hypothetical protein CCDC5079_0368 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297091|gb|AEJ49201.1| hypothetical protein CCDC5180_0364 [Mycobacterium tuberculosis 
CCDC5180]
Length=229

 Score =  452 bits (1163),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 228/229 (99%), Positives = 229/229 (100%), Gaps = 0/229 (0%)

Query  11   VISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLSRIDKNPELEP  70
            +ISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLSRIDKNPELEP
Sbjct  1    MISAGLSAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGGADTVLSRIDKNPELEP  60

Query  71   LLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEPVHIHALVRLA  130
            LLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEPVHIHALVRLA
Sbjct  61   LLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEPVHIHALVRLA  120

Query  131  KAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNGTGTPAEESGH  190
            KAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNGTGTPAEESGH
Sbjct  121  KAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNGTGTPAEESGH  180

Query  191  ILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR  239
            ILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR
Sbjct  181  ILIHDVSDFGHRLLAYLRAADAGAELLILPSGGSAPTGDHPTPHPSTSR  229


>gi|134288138|ref|YP_001110302.1| SNF2-related protein [Burkholderia vietnamiensis G4]
 gi|134132788|gb|ABO60414.1| SNF2-related protein [Burkholderia vietnamiensis G4]
Length=599

 Score = 44.3 bits (103),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 45/161 (28%), Positives = 69/161 (43%), Gaps = 24/161 (14%)

Query  12   ISAGLSAIPMVG--GPLQTVFDAIEERTRHRAETTTREICESVGGADTVLSRIDKNPELE  69
            I   LS  P+ G  G +  V + ++       +T TRE C   G      S + K+PEL 
Sbjct  273  IVLALSGTPIYGRGGEMWNVMNVVDYHCLGDWDTFTREWCAGYG------SDVVKDPEL-  325

Query  70   PLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEPVHIHALVRL  129
                  + A  R      RR   + AA     ++ VE         ++     +   VRL
Sbjct  326  ------LNATLRRDGLMLRRRKEEVAAQLPAKERIVESVDSDQGIFAKF----VTEAVRL  375

Query  130  AKAAKSSPDQDE-----IQRREVMRAASKVEPVPVLAALIQ  165
            AK+AK+SPD+ E     +Q  E+ R A+ V   P +AA ++
Sbjct  376  AKSAKASPDRFERGRLQMQAIELTRRATGVAKAPAVAAFVR  416


>gi|300113714|ref|YP_003760289.1| hypothetical protein Nwat_1026 [Nitrosococcus watsonii C-113]
 gi|299539651|gb|ADJ27968.1| hypothetical protein Nwat_1026 [Nitrosococcus watsonii C-113]
Length=221

 Score = 40.4 bits (93),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 32/127 (26%), Positives = 53/127 (42%), Gaps = 10/127 (7%)

Query  17   SAIPMVGGPLQTVFDAIEERTRHRAETTTREICESVGG------ADTVLSRIDKNPELEP  70
            SA+P +GGP+  V   +   +  R     RE+ ES+        ++   S + K  E E 
Sbjct  27   SAVPWIGGPVSNVLGGM---SLGRKLGRVREVLESLSNDLKEFKSEASESYV-KTEEFED  82

Query  71   LLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEPVHIHALVRLA  130
            LL Q ++       E KR L       A+E  +  +    ++ T  Q+ P HI  L   +
Sbjct  83   LLEQTLKRVGEERNEEKRHLYKAFLTDAIESPEPYDDQLCLLRTFEQISPDHIRVLKAFS  142

Query  131  KAAKSSP  137
            +    +P
Sbjct  143  QEPNPNP  149


>gi|324499851|gb|ADY39946.1| Activating signal cointegrator 1 complex subunit 3 [Ascaris suum]
Length=2228

 Score = 37.7 bits (86),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 45/187 (25%), Positives = 80/187 (43%), Gaps = 18/187 (9%)

Query  56   DTVLSRID-KNPELEPLLSQAIEAATR----TSMEAKRRLLAQAAAAALEDDQKVEPASL  110
            DT LSR +    ++  L  +  +  TR    TS+    RLL       L DD+     ++
Sbjct  620  DTTLSRREIAETQMLVLTPEKWDVVTRKDSETSLARLMRLLIIDEVHLLHDDRGPVIETI  679

Query  111  IVATLSQLEPVHIHALVRLAKAAKSSPDQDEIQR-------REVMRAASKVEPVPVLAAL  163
            +  TL Q+E       VR+   + + P+  ++ R       + +    S+  PVP    L
Sbjct  680  VARTLRQVEMSQ--QGVRIVGLSATLPNYVDVARFLRVNPYKGLFFFDSRFRPVP----L  733

Query  164  IQTGVAIATTTVWHGNGTGTPAEESGHILIHDVSDFGHRLLAYLRAADAGAELLILPSGG  223
             QT + +  +         T  +E  +  +H+ +  GH++L ++ A +A A+L I     
Sbjct  734  SQTFIGVRKSAGSSAKFASTEMDEVCYEKVHEFAQQGHQVLVFVHARNATAKLAIFFRDR  793

Query  224  SAPTGDH  230
            +A  G H
Sbjct  794  AAKLGHH  800


>gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
 gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
Length=747

 Score = 35.4 bits (80),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 57/205 (28%), Positives = 90/205 (44%), Gaps = 32/205 (15%)

Query  26   LQTVFDAIEERTRHRAETTT----REICESVGGADTVLSRIDKNPELEPLLSQAIEAATR  81
            L+  + A  E T+ RAE       R+  E + G++   SRI      + LL Q + A  +
Sbjct  424  LKLRYLARLEETKIRAENKALAAERKGLEKMLGSE---SRI------KDLLRQELLADAK  474

Query  82   TSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEPVHIHALVRLAKAAKSSPDQDE  141
               +A+R  + + ++A + D Q + PA LI   LS+         VR AK+   +P    
Sbjct  475  KFGDARRSPIVERSSATVLDKQSLLPAELITVVLSE------KGWVRAAKSQDVNPAALS  528

Query  142  IQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHG----NGTGTPAEESGHILIHDVS  197
             +  +  RA+++         L  TG +   T   HG     G G P   SGH+ +   +
Sbjct  529  YRTGDSYRASARGRSNQSAIFLDSTGRSY--TLPAHGLPSARGQGEPL--SGHLQVAPGA  584

Query  198  DFGHRLLA-----YLRAADAGAELL  217
            +F   LLA     YL A++AG   L
Sbjct  585  EFIAILLAEPEEFYLMASNAGYGFL  609


>gi|327287208|ref|XP_003228321.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein cut-like 1-like 
[Anolis carolinensis]
Length=1662

 Score = 35.4 bits (80),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 36/124 (30%), Positives = 59/124 (48%), Gaps = 18/124 (14%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSMEAKR  88
            ER   RAE   RE   + E +  A+  L   ++I K P++E    QAIE  TR+S+EA+ 
Sbjct  386  ERANQRAEVAQREAEALREQLSSANKSLQLATQIQKAPDVE----QAIEVLTRSSLEAEL  441

Query  89   RLLAQAAAAALEDDQKV--------EPASLIVATLSQLEPVHIHALVRLAKAAKSSPDQD  140
                +  A  +ED Q++        E ++  ++ L Q        L +L +  K   D D
Sbjct  442  AAKEREIAQLVEDVQRLQGNLSKLRENSTSQISQLEQQLTAKNSTLKQLEEKLKVQADYD  501

Query  141  EIQR  144
            E+++
Sbjct  502  EVKK  505


>gi|344289761|ref|XP_003416609.1| PREDICTED: homeobox protein cut-like 1 [Loxodonta africana]
Length=1330

 Score = 35.4 bits (80),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 43/129 (34%), Positives = 64/129 (50%), Gaps = 28/129 (21%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  269  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  324

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLE---PVHIHALVRLAKAAKS  135
             AK R +AQ     +ED Q+++ ASL        + +SQLE         L +L +  K 
Sbjct  325  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG  379

Query  136  SPDQDEIQR  144
              D +E+++
Sbjct  380  QADYEEVKK  388


>gi|119944788|ref|YP_942468.1| urocanate hydratase [Psychromonas ingrahamii 37]
 gi|119863392|gb|ABM02869.1| urocanate hydratase [Psychromonas ingrahamii 37]
Length=559

 Score = 35.0 bits (79),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 37/166 (23%), Positives = 71/166 (43%), Gaps = 20/166 (12%)

Query  62   IDKNPELEPLLSQAIEAATRTSMEAKRRLLAQAAAAALEDDQKVEPASLIVATLSQLEPV  121
            I  NP+L   L  A E      + A+           L+D Q++  A   +    +L+  
Sbjct  384  IPNNPDLHNWLDMAREHIQFQGLPAR------ICWVGLKDRQRLGLAFNEMVKNGELKAP  437

Query  122  HIHALVRLAKAAKSSPDQDEIQRREVMRAASKVEPVPVLAALIQTGVAIATTTVWHGNGT  181
             +     L   + +SP++   +  +++  +  V   P+L AL+ T       ++ HG G 
Sbjct  438  LVIGRDHLDSGSVASPNR---ETEDMLDGSDAVSDWPLLNALLNTASGATWVSLHHGGGV  494

Query  182  GTP-AEESGHILIHDVSDFGHRLLA----------YLRAADAGAEL  216
            G   ++ SG +++ D +D  H+ ++           +R ADAG E+
Sbjct  495  GMGFSQHSGMVVVCDGTDDAHQRISRVLRNDPATGVMRHADAGYEI  540


>gi|14346042|gb|AAK59986.1| CCAAT displacement protein CDP [Mus musculus]
Length=1517

 Score = 35.0 bits (79),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 44/130 (34%), Positives = 67/130 (52%), Gaps = 30/130 (23%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  237  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  292

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLEPVHIHA----LVRLAKAAK  134
             AK R +AQ     +ED Q+++ ASL        + +SQLE   ++A    L +L +  K
Sbjct  293  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLE-QQLNAKNSTLKQLEEKLK  346

Query  135  SSPDQDEIQR  144
               D +E+++
Sbjct  347  GQADYEEVKK  356


>gi|281337674|gb|EFB13258.1| hypothetical protein PANDA_015425 [Ailuropoda melanoleuca]
Length=1113

 Score = 35.0 bits (79),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 43/129 (34%), Positives = 64/129 (50%), Gaps = 28/129 (21%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  148  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  203

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLE---PVHIHALVRLAKAAKS  135
             AK R +AQ     +ED Q+++ ASL        + +SQLE         L +L +  K 
Sbjct  204  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG  258

Query  136  SPDQDEIQR  144
              D +E+++
Sbjct  259  QADYEEVKK  267


>gi|297288071|ref|XP_001114534.2| PREDICTED: cut-like 1 [Macaca mulatta]
Length=1514

 Score = 35.0 bits (79),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 43/129 (34%), Positives = 64/129 (50%), Gaps = 28/129 (21%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  237  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  292

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLE---PVHIHALVRLAKAAKS  135
             AK R +AQ     +ED Q+++ ASL        + +SQLE         L +L +  K 
Sbjct  293  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG  347

Query  136  SPDQDEIQR  144
              D +E+++
Sbjct  348  QADYEEVKK  356


>gi|110835729|ref|NP_034116.3| protein CASP isoform a [Mus musculus]
Length=1426

 Score = 35.0 bits (79),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 44/130 (34%), Positives = 67/130 (52%), Gaps = 30/130 (23%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  248  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  303

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLEPVHIHA----LVRLAKAAK  134
             AK R +AQ     +ED Q+++ ASL        + +SQLE   ++A    L +L +  K
Sbjct  304  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLE-QQLNAKNSTLKQLEEKLK  357

Query  135  SSPDQDEIQR  144
               D +E+++
Sbjct  358  GQADYEEVKK  367


>gi|60688551|gb|AAH90847.1| Cut-like homeobox 1 [Mus musculus]
Length=1426

 Score = 35.0 bits (79),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 44/130 (34%), Positives = 67/130 (52%), Gaps = 30/130 (23%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  248  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  303

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLEPVHIHA----LVRLAKAAK  134
             AK R +AQ     +ED Q+++ ASL        + +SQLE   ++A    L +L +  K
Sbjct  304  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLE-QQLNAKNSTLKQLEEKLK  357

Query  135  SSPDQDEIQR  144
               D +E+++
Sbjct  358  GQADYEEVKK  367


>gi|301780872|ref|XP_002925852.1| PREDICTED: homeobox protein cut-like 1-like [Ailuropoda melanoleuca]
Length=1292

 Score = 35.0 bits (79),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 43/129 (34%), Positives = 64/129 (50%), Gaps = 28/129 (21%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  237  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  292

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLE---PVHIHALVRLAKAAKS  135
             AK R +AQ     +ED Q+++ ASL        + +SQLE         L +L +  K 
Sbjct  293  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG  347

Query  136  SPDQDEIQR  144
              D +E+++
Sbjct  348  QADYEEVKK  356


>gi|148277064|ref|NP_853530.2| protein CASP isoform a [Homo sapiens]
 gi|296439379|sp|P39880.3|CUX1_HUMAN RecName: Full=Homeobox protein cut-like 1; AltName: Full=CCAAT 
displacement protein; Short=CDP; AltName: Full=Homeobox protein 
cux-1
Length=1505

 Score = 35.0 bits (79),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 43/129 (34%), Positives = 64/129 (50%), Gaps = 28/129 (21%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  237  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  292

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLE---PVHIHALVRLAKAAKS  135
             AK R +AQ     +ED Q+++ ASL        + +SQLE         L +L +  K 
Sbjct  293  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG  347

Query  136  SPDQDEIQR  144
              D +E+++
Sbjct  348  QADYEEVKK  356


>gi|321400107|ref|NP_001189472.1| protein CASP isoform d [Homo sapiens]
 gi|42793995|gb|AAH66592.1| CUX1 protein [Homo sapiens]
 gi|119570613|gb|EAW50228.1| cut-like 1, CCAAT displacement protein (Drosophila), isoform 
CRA_b [Homo sapiens]
Length=1516

 Score = 35.0 bits (79),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 43/129 (34%), Positives = 64/129 (50%), Gaps = 28/129 (21%)

Query  35   ERTRHRAETTTRE---ICESVGGADTVL---SRIDKNPELEPLLSQAIEAATRTSME---  85
            ER   RAE   RE   + E +  A+  L   S+I K P++E    QAIE  TR+S+E   
Sbjct  248  ERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE----QAIEVLTRSSLEVEL  303

Query  86   -AKRRLLAQAAAAALEDDQKVEPASLI------VATLSQLE---PVHIHALVRLAKAAKS  135
             AK R +AQ     +ED Q+++ ASL        + +SQLE         L +L +  K 
Sbjct  304  AAKEREIAQ----LVEDVQRLQ-ASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKG  358

Query  136  SPDQDEIQR  144
              D +E+++
Sbjct  359  QADYEEVKK  367



Lambda     K      H
   0.314    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 329042631632




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40