BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0395
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
gi|167970792|ref|ZP_02553069.1| hypothetical protein MtubH3_2323... 273 5e-72
gi|15607536|ref|NP_214909.1| hypothetical protein Rv0395 [Mycoba... 273 7e-72
gi|15839777|ref|NP_334814.1| hypothetical protein MT0405 [Mycoba... 271 2e-71
gi|323721201|gb|EGB30262.1| hypothetical protein TMMG_03150 [Myc... 265 2e-69
gi|342858699|ref|ZP_08715354.1| hypothetical protein MCOL_07476 ... 186 1e-45
gi|256398018|ref|YP_003119582.1| hypothetical protein Caci_8928 ... 49.7 2e-04
gi|124360420|gb|ABN08430.1| hypothetical protein MtrDRAFT_AC1573... 38.1 0.45
gi|452504|gb|AAA62129.1| rhamnosyl transferase [Pseudomonas aeru... 36.6 1.4
gi|281331816|emb|CBI71031.1| rhamnosyltrasferase-1 [Pseudomonas ... 36.2 1.5
gi|152987698|ref|YP_001347032.1| rhamnosyltransferase chain B [P... 36.2 1.6
gi|281331810|emb|CBI71028.1| rhamnosyltransferase-1 [Pseudomonas... 36.2 1.8
gi|15598674|ref|NP_252168.1| rhamnosyltransferase chain B [Pseud... 36.2 1.8
gi|281331812|emb|CBI71029.1| rhamnosyltransferase-1 [Pseudomonas... 36.2 1.9
gi|254236427|ref|ZP_04929750.1| rhamnosyltransferase chain B [Ps... 36.2 1.9
gi|281331822|emb|CBI71034.1| rhamnosyltransferase-1 [Pseudomonas... 36.2 1.9
gi|218890274|ref|YP_002439138.1| rhamnosyltransferase chain B [P... 35.8 2.1
>gi|167970792|ref|ZP_02553069.1| hypothetical protein MtubH3_23235 [Mycobacterium tuberculosis
H37Ra]
Length=146
Score = 273 bits (699), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI
Sbjct 13 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 72
Query 61 GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS 120
GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS
Sbjct 73 GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS 132
Query 121 RCSSARGRLCLSMS 134
RCSSARGRLCLSMS
Sbjct 133 RCSSARGRLCLSMS 146
>gi|15607536|ref|NP_214909.1| hypothetical protein Rv0395 [Mycobacterium tuberculosis H37Rv]
gi|148660160|ref|YP_001281683.1| hypothetical protein MRA_0401A [Mycobacterium tuberculosis H37Ra]
gi|307082877|ref|ZP_07491990.1| hypothetical protein TMLG_01817 [Mycobacterium tuberculosis SUMu012]
gi|1817710|emb|CAB06601.1| HYPOTHETICAL PROTEIN Rv0395 [Mycobacterium tuberculosis H37Rv]
gi|148504312|gb|ABQ72121.1| hypothetical protein MRA_0401A [Mycobacterium tuberculosis H37Ra]
gi|308367402|gb|EFP56253.1| hypothetical protein TMLG_01817 [Mycobacterium tuberculosis SUMu012]
Length=134
Score = 273 bits (698), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI
Sbjct 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
Query 61 GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS 120
GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS
Sbjct 61 GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS 120
Query 121 RCSSARGRLCLSMS 134
RCSSARGRLCLSMS
Sbjct 121 RCSSARGRLCLSMS 134
>gi|15839777|ref|NP_334814.1| hypothetical protein MT0405 [Mycobacterium tuberculosis CDC1551]
gi|31791571|ref|NP_854064.1| hypothetical protein Mb0401 [Mycobacterium bovis AF2122/97]
gi|121636307|ref|YP_976530.1| hypothetical protein BCG_0432 [Mycobacterium bovis BCG str. Pasteur
1173P2]
68 more sequence titles
Length=134
Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI
Sbjct 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
Query 61 GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS 120
GCVPWLSSEAVAETLLALS FCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS
Sbjct 61 GCVPWLSSEAVAETLLALSAFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGS 120
Query 121 RCSSARGRLCLSMS 134
RCSSARGRLCLSMS
Sbjct 121 RCSSARGRLCLSMS 134
>gi|323721201|gb|EGB30262.1| hypothetical protein TMMG_03150 [Mycobacterium tuberculosis CDC1551A]
gi|339293448|gb|AEJ45559.1| hypothetical protein CCDC5079_0369 [Mycobacterium tuberculosis
CCDC5079]
gi|339297092|gb|AEJ49202.1| hypothetical protein CCDC5180_0365 [Mycobacterium tuberculosis
CCDC5180]
Length=131
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 130/131 (99%), Positives = 130/131 (99%), Gaps = 0/131 (0%)
Query 4 MPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAIGCV 63
MPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAIGCV
Sbjct 1 MPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAIGCV 60
Query 64 PWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGSRCS 123
PWLSSEAVAETLLALS FCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGSRCS
Sbjct 61 PWLSSEAVAETLLALSAFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHGSRCS 120
Query 124 SARGRLCLSMS 134
SARGRLCLSMS
Sbjct 121 SARGRLCLSMS 131
>gi|342858699|ref|ZP_08715354.1| hypothetical protein MCOL_07476 [Mycobacterium colombiense CECT
3035]
gi|342134403|gb|EGT87583.1| hypothetical protein MCOL_07476 [Mycobacterium colombiense CECT
3035]
Length=267
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/119 (72%), Positives = 100/119 (85%), Gaps = 0/119 (0%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
D M LGDYE FR WSGKPRAWGP E+GWRAWFGG++VDGLCEV++E LAV+RRG+PAAI
Sbjct 2 FDEMALGDYEVFRRWSGKPRAWGPHEAGWRAWFGGQVVDGLCEVIEEDLAVKRRGMPAAI 61
Query 61 GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRLRDMAPSEHG 119
GCVPW +S+ VA LL L+ FCVV+DK T FP RLRNP+K PNV+L+RLRDMAPS+ G
Sbjct 62 GCVPWFTSQPVARRLLDLTAFCVVVDKRTVFPDRLRNPEKALPNVSLVRLRDMAPSDSG 120
>gi|256398018|ref|YP_003119582.1| hypothetical protein Caci_8928 [Catenulispora acidiphila DSM
44928]
gi|256364244|gb|ACU77741.1| hypothetical protein Caci_8928 [Catenulispora acidiphila DSM
44928]
Length=272
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (37%), Positives = 43/95 (46%), Gaps = 14/95 (14%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAV--------R 52
MD PLGD+E PR WG G ++D L L H + R
Sbjct 1 MDMRPLGDHEQL--LGSTPRPWGFGT----VVHGSGVLDDLVAGLARHGSTDWTGEYWRR 54
Query 53 RRGVPAAIGCVPWLSSEAVAETLLALSVFCVVIDK 87
AAIGCVPWL+ AVAE L + C+V+DK
Sbjct 55 LEPAAAAIGCVPWLTDFAVAEALASFDQCCIVVDK 89
>gi|124360420|gb|ABN08430.1| hypothetical protein MtrDRAFT_AC157375g6v1 [Medicago truncatula]
Length=92
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/93 (31%), Positives = 43/93 (47%), Gaps = 6/93 (6%)
Query 18 KPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAIGCVPWLSSEAVAETLLA 77
K ++ G ++ G R FGG VDG CE + A G A+ C W + + L+
Sbjct 6 KKKSIGGEKRG-RESFGGHAVDGCCEFI----AAGEEGTLEAVICAAWRIQNSRIQILIP 60
Query 78 LSVFCVVIDKGTSFPSRLRNPDKGFPNVALLRL 110
S FCVV+ + + P F +A++RL
Sbjct 61 PSCFCVVVLHESDSLMLVMEPTSEF-FLAMMRL 92
>gi|452504|gb|AAA62129.1| rhamnosyl transferase [Pseudomonas aeruginosa]
gi|218321098|emb|CAV17614.1| rhamnosyl transferase 2 [Pseudomonas aeruginosa]
gi|310696647|gb|ADP06388.1| RhlB [Pseudomonas aeruginosa]
Length=426
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QTIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSAQVSPSTLLS 135
>gi|281331816|emb|CBI71031.1| rhamnosyltrasferase-1 [Pseudomonas aeruginosa]
gi|281331818|emb|CBI71032.1| rhamnosyltransferase-1 [Pseudomonas aeruginosa]
Length=426
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSTQVSPSTLLS 135
>gi|152987698|ref|YP_001347032.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa PA7]
gi|150962856|gb|ABR84881.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa PA7]
Length=426
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/115 (23%), Positives = 48/115 (42%), Gaps = 6/115 (5%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
++++PL D T+R G PR W P+ S W + + G+ E + E++ +R +
Sbjct 48 IEFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVCAQRHDDIVVV 104
Query 61 GCVPWLSSEAVAETLLALSVFCVVIDKGTSFPSRL--RNPDKGFPNVALLRLRDM 113
G + W +A + V + T + L +P P L +R +
Sbjct 105 GSL-WALGARIAHEKYGIPYLSVQVSPSTLLSAHLPPVHPRFNVPEQVPLAMRKL 158
>gi|281331810|emb|CBI71028.1| rhamnosyltransferase-1 [Pseudomonas aeruginosa]
gi|281331814|emb|CBI71030.1| rhamnosyltransferse-1 [Pseudomonas aeruginosa]
Length=426
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSAQVSPSTLLS 135
>gi|15598674|ref|NP_252168.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa PAO1]
gi|107103011|ref|ZP_01366929.1| hypothetical protein PaerPA_01004080 [Pseudomonas aeruginosa
PACS2]
gi|116051497|ref|YP_789669.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa UCBPP-PA14]
12 more sequence titles
Length=426
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSAQVSPSTLLS 135
>gi|281331812|emb|CBI71029.1| rhamnosyltransferase-1 [Pseudomonas aeruginosa]
Length=426
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSAQVSPSTLLS 135
>gi|254236427|ref|ZP_04929750.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa C3719]
gi|126168358|gb|EAZ53869.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa C3719]
Length=427
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSAQVSPSTLLS 135
>gi|281331822|emb|CBI71034.1| rhamnosyltransferase-1 [Pseudomonas aeruginosa]
Length=426
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRTMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSAQVSPSTLLS 135
>gi|218890274|ref|YP_002439138.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa LESB58]
gi|218770497|emb|CAW26262.1| rhamnosyltransferase chain B [Pseudomonas aeruginosa LESB58]
Length=426
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/91 (26%), Positives = 42/91 (47%), Gaps = 17/91 (18%)
Query 1 MDWMPLGDYETFRHWSGKPRAWGPQESGWRAWFGGKIVDGLCEVLDEHLAVRRRGVPAAI 60
+ ++PL D T+R G PR W P+ S W + + G+ E + E+++ +R +
Sbjct 48 IAFVPLSDELTYRRAMGDPRLWDPKTSFGVLW---QAIAGMIEPVYEYVSAQRHDDIVVV 104
Query 61 GC--------------VPWLSSEAVAETLLA 77
G +P+LS++ TLL+
Sbjct 105 GSLWALGARIAHEKYGIPYLSAQVSPSTLLS 135
Lambda K H
0.323 0.138 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129924441710
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40