BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0397

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607538|ref|NP_214911.1|  13E12 repeat family protein [Mycoba...   243    5e-63
gi|308395441|ref|ZP_07669334.1|  hypothetical protein TMLG_01820 ...   231    3e-59
gi|289572981|ref|ZP_06453208.1|  13E12 repeat family protein [Myc...   212    2e-53
gi|308395350|ref|ZP_07669332.1|  putative HNH endonuclease domain...   197    3e-49
gi|308369380|ref|ZP_07666723.1|  13E12 repeat family protein [Myc...   191    4e-47
gi|289756461|ref|ZP_06515839.1|  13E12 repeat-containing protein ...   188    2e-46
gi|167970794|ref|ZP_02553071.1|  13E12 repeat family protein [Myc...   188    2e-46
gi|289445930|ref|ZP_06435674.1|  13E12 repeat family protein [Myc...   187    3e-46
gi|339630462|ref|YP_004722104.1|  hypothetical protein MAF_03950 ...   187    4e-46
gi|15607534|ref|NP_214907.1|  13E12 repeat family protein [Mycoba...   187    4e-46
gi|308371659|ref|ZP_07667218.1|  13E12 repeat family protein [Myc...   187    4e-46
gi|289748879|ref|ZP_06508257.1|  13E12 repeat family protein [Myc...   143    7e-33
gi|240168892|ref|ZP_04747551.1|  13E12 repeat-containing protein ...   137    6e-31
gi|289752422|ref|ZP_06511800.1|  13e12 repeat-containing protein ...   133    9e-30
gi|296164577|ref|ZP_06847145.1|  possible 13e12 repeat-containing...   133    9e-30
gi|308372850|ref|ZP_07430129.2|  putative HNH endonuclease domain...   132    2e-29
gi|296167887|ref|ZP_06850068.1|  possible 13e12 repeat-containing...   131    4e-29
gi|308375115|ref|ZP_07442750.2|  putative HNH endonuclease domain...   128    3e-28
gi|308377383|ref|ZP_07478941.2|  putative HNH endonuclease domain...   125    2e-27
gi|308395168|ref|ZP_07491929.2|  putative HNH endonuclease domain...   124    5e-27
gi|308376350|ref|ZP_07438537.2|  putative HNH endonuclease domain...   124    6e-27
gi|342860741|ref|ZP_08717391.1|  hypothetical protein MCOL_17758 ...   122    2e-26
gi|308371633|ref|ZP_07425595.2|  putative HNH endonuclease domain...   122    2e-26
gi|336461519|gb|EGO40387.1|  protein of unknown function DUF222/H...   122    3e-26
gi|118466571|ref|YP_882639.1|  hypothetical protein MAV_3457 [Myc...   121    3e-26
gi|254775900|ref|ZP_05217416.1|  13e12 repeat-containing protein ...   120    5e-26
gi|308379740|ref|ZP_07487375.2|  putative HNH endonuclease domain...   120    8e-26
gi|308369353|ref|ZP_07417455.2|  13E12 repeat family protein [Myc...   120    9e-26
gi|294996023|ref|ZP_06801714.1|  hypothetical protein Mtub2_16383...   120    9e-26
gi|339293562|gb|AEJ45673.1|  hypothetical protein CCDC5079_0483 [...   120    1e-25
gi|15839908|ref|NP_334945.1|  hypothetical protein MT0536 [Mycoba...   120    1e-25
gi|148821717|ref|YP_001286471.1|  13E12 repeat-containing protein...   119    1e-25
gi|340625543|ref|YP_004743995.1|  hypothetical protein MCAN_05181...   119    1e-25
gi|294995093|ref|ZP_06800784.1|  13E12 repeat family protein [Myc...   119    1e-25
gi|289441901|ref|ZP_06431645.1|  13E12 repeat family protein [Myc...   119    1e-25
gi|289441716|ref|ZP_06431460.1|  13E12 repeat family protein [Myc...   119    1e-25
gi|148821532|ref|YP_001286286.1|  13E12 repeat-containing protein...   119    1e-25
gi|253797447|ref|YP_003030448.1|  13E12 repeat family protein [My...   119    1e-25
gi|340625367|ref|YP_004743819.1|  hypothetical protein MCAN_03381...   119    1e-25
gi|289573105|ref|ZP_06453332.1|  13E12 repeat family protein [Myc...   119    1e-25
gi|289572922|ref|ZP_06453149.1|  13E12 repeat family protein [Myc...   119    1e-25
gi|289756401|ref|ZP_06515779.1|  13E12 repeat-containing protein ...   119    1e-25
gi|15607477|ref|NP_214850.1|  13E12 repeat family protein [Mycoba...   119    1e-25
gi|15607656|ref|NP_215029.1|  13E12 repeat family protein [Mycoba...   119    1e-25
gi|326906089|gb|EGE53022.1|  13E12 repeat family protein [Mycobac...   119    1e-25
gi|289752366|ref|ZP_06511744.1|  13e12 repeat-containing protein ...   119    1e-25
gi|308395290|ref|ZP_07491932.2|  hypothetical protein TMLG_01758 ...   119    2e-25
gi|289552588|ref|ZP_06441798.1|  13E12 repeat family protein [Myc...   119    2e-25
gi|307083006|ref|ZP_07492119.1|  hypothetical protein TMLG_03662 ...   119    2e-25
gi|306787331|ref|ZP_07425653.1|  putative HNH endonuclease domain...   119    2e-25


>gi|15607538|ref|NP_214911.1| 13E12 repeat family protein [Mycobacterium tuberculosis H37Rv]
 gi|31791573|ref|NP_854066.1| 13E12 repeat family protein [Mycobacterium bovis AF2122/97]
 gi|121636309|ref|YP_976532.1| 13e12 repeat-containing protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 63 more sequence titles
 gi|148821592|ref|YP_001286346.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis F11]
 gi|224988781|ref|YP_002643468.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|253797319|ref|YP_003030320.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254363358|ref|ZP_04979404.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|254549339|ref|ZP_05139786.1| 13E12 repeat family protein [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|289441775|ref|ZP_06431519.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289552645|ref|ZP_06441855.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
 gi|289568309|ref|ZP_06448536.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
 gi|289744093|ref|ZP_06503471.1| 13E12 repeat family protein [Mycobacterium tuberculosis 02_1987]
 gi|289748883|ref|ZP_06508261.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
 gi|289752426|ref|ZP_06511804.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289756465|ref|ZP_06515843.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis T85]
 gi|289760510|ref|ZP_06519888.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|294995153|ref|ZP_06800844.1| 13E12 repeat family protein [Mycobacterium tuberculosis 210]
 gi|297632879|ref|ZP_06950659.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729854|ref|ZP_06958972.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN R506]
 gi|298523871|ref|ZP_07011280.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|306774491|ref|ZP_07412828.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu001]
 gi|306779237|ref|ZP_07417574.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu002]
 gi|306783025|ref|ZP_07421347.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu003]
 gi|306787394|ref|ZP_07425716.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu004]
 gi|306791946|ref|ZP_07430248.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu005]
 gi|306796133|ref|ZP_07434435.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu006]
 gi|306801990|ref|ZP_07438658.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu008]
 gi|306806204|ref|ZP_07442872.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu007]
 gi|306966400|ref|ZP_07479061.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu009]
 gi|306970595|ref|ZP_07483256.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu010]
 gi|307078322|ref|ZP_07487492.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu011]
 gi|313657183|ref|ZP_07814063.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN V2475]
 gi|1817712|emb|CAB06603.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|31617159|emb|CAD93266.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491956|emb|CAL70419.1| Conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|134148872|gb|EBA40917.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|148720119|gb|ABR04744.1| 13E12 repeat family protein [Mycobacterium tuberculosis F11]
 gi|224771894|dbj|BAH24700.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|253318822|gb|ACT23425.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289414694|gb|EFD11934.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289437277|gb|EFD19770.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
 gi|289542062|gb|EFD45711.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
 gi|289684621|gb|EFD52109.1| 13E12 repeat family protein [Mycobacterium tuberculosis 02_1987]
 gi|289689470|gb|EFD56899.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
 gi|289693013|gb|EFD60442.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708016|gb|EFD72032.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|289712029|gb|EFD76041.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis T85]
 gi|298493665|gb|EFI28959.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|308216843|gb|EFO76242.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu001]
 gi|308327790|gb|EFP16641.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu002]
 gi|308332144|gb|EFP20995.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu003]
 gi|308335928|gb|EFP24779.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu004]
 gi|308339532|gb|EFP28383.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu005]
 gi|308343409|gb|EFP32260.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu006]
 gi|308347218|gb|EFP36069.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu007]
 gi|308351246|gb|EFP40097.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu008]
 gi|308355800|gb|EFP44651.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu009]
 gi|308359719|gb|EFP48570.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu010]
 gi|308363662|gb|EFP52513.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu011]
 gi|323721203|gb|EGB30264.1| 13E12 repeat family protein [Mycobacterium tuberculosis CDC1551A]
 gi|326902222|gb|EGE49155.1| 13E12 repeat family protein [Mycobacterium tuberculosis W-148]
 gi|328457106|gb|AEB02529.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339293450|gb|AEJ45561.1| 13E12 repeat family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339297094|gb|AEJ49204.1| 13E12 repeat family protein [Mycobacterium tuberculosis CCDC5180]
 gi|341600325|emb|CCC62995.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Moreau RDJ]
 gi|344218213|gb|AEM98843.1| 13E12 repeat family protein [Mycobacterium tuberculosis CTRI-2]
Length=122

 Score =  243 bits (621),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            +LATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG
Sbjct  1    MLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDDPP  120
            QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDDPP
Sbjct  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDDPP  120

Query  121  PF  122
            PF
Sbjct  121  PF  122


>gi|308395441|ref|ZP_07669334.1| hypothetical protein TMLG_01820 [Mycobacterium tuberculosis SUMu012]
 gi|308367311|gb|EFP56162.1| hypothetical protein TMLG_01820 [Mycobacterium tuberculosis SUMu012]
Length=116

 Score =  231 bits (589),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 116/116 (100%), Positives = 116/116 (100%), Gaps = 0/116 (0%)

Query  7    GWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRGQRTAMM  66
            GWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRGQRTAMM
Sbjct  1    GWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRGQRTAMM  60

Query  67   PRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDDPPPF  122
            PRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDDPPPF
Sbjct  61   PRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDDPPPF  116


>gi|289572981|ref|ZP_06453208.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
 gi|339630466|ref|YP_004722108.1| hypothetical protein MAF_03990 [Mycobacterium africanum GM041182]
 gi|289537412|gb|EFD41990.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
 gi|339329822|emb|CCC25471.1| conserved 13E12 repeat family protein [Mycobacterium africanum 
GM041182]
Length=122

 Score =  212 bits (539),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 105/110 (96%), Positives = 107/110 (98%), Gaps = 0/110 (0%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            +LATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  1    MLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  60

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIAHVVTQTATTAPETNG
Sbjct  61   QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIAHVVTQTATTAPETNG  110


>gi|308395350|ref|ZP_07669332.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu012]
 gi|308367409|gb|EFP56260.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu012]
Length=434

 Score =  197 bits (502),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 100/115 (87%), Positives = 103/115 (90%), Gaps = 4/115 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  324  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  383

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDP  115
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+GPPPDP
Sbjct  384  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHGPPPDP  434


>gi|308369380|ref|ZP_07666723.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu002]
 gi|308327786|gb|EFP16637.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu002]
Length=441

 Score =  191 bits (484),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 97/110 (89%), Positives = 98/110 (90%), Gaps = 4/110 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPP PDPARADRRG
Sbjct  324  LLATFCGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPAPDPARADRRG  383

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+G
Sbjct  384  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHG  429


>gi|289756461|ref|ZP_06515839.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis T85]
 gi|289712025|gb|EFD76037.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis T85]
Length=274

 Score =  188 bits (477),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 95/110 (87%), Positives = 98/110 (90%), Gaps = 4/110 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  157  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  216

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+G
Sbjct  217  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHG  262


>gi|167970794|ref|ZP_02553071.1| 13E12 repeat family protein [Mycobacterium tuberculosis H37Ra]
 gi|254549335|ref|ZP_05139782.1| 13E12 repeat family protein [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|294995149|ref|ZP_06800840.1| 13E12 repeat family protein [Mycobacterium tuberculosis 210]
 6 more sequence titles
 gi|297632875|ref|ZP_06950655.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729850|ref|ZP_06958968.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN R506]
 gi|313657179|ref|ZP_07814059.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN V2475]
 gi|323721199|gb|EGB30260.1| 13E12 repeat family protein [Mycobacterium tuberculosis CDC1551A]
 gi|339293446|gb|AEJ45557.1| 13E12 repeat family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339297090|gb|AEJ49200.1| 13E12 repeat family protein [Mycobacterium tuberculosis CCDC5180]
Length=330

 Score =  188 bits (477),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 95/110 (87%), Positives = 98/110 (90%), Gaps = 4/110 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  213  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  272

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+G
Sbjct  273  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHG  318


>gi|289445930|ref|ZP_06435674.1| 13E12 repeat family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418888|gb|EFD16089.1| 13E12 repeat family protein [Mycobacterium tuberculosis CPHL_A]
Length=441

 Score =  187 bits (476),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 95/110 (87%), Positives = 98/110 (90%), Gaps = 4/110 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  324  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  383

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+G
Sbjct  384  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHG  429


>gi|339630462|ref|YP_004722104.1| hypothetical protein MAF_03950 [Mycobacterium africanum GM041182]
 gi|339329818|emb|CCC25467.1| conserved 13E12 repeat family protein [Mycobacterium africanum 
GM041182]
Length=441

 Score =  187 bits (476),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 95/110 (87%), Positives = 98/110 (90%), Gaps = 4/110 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  324  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  383

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+G
Sbjct  384  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHG  429


>gi|15607534|ref|NP_214907.1| 13E12 repeat family protein [Mycobacterium tuberculosis H37Rv]
 gi|15839775|ref|NP_334812.1| hypothetical protein MT0404 [Mycobacterium tuberculosis CDC1551]
 gi|31791569|ref|NP_854062.1| 13E12 repeat family protein [Mycobacterium bovis AF2122/97]
 49 more sequence titles
 gi|121636305|ref|YP_976528.1| 13e12 repeat-containing protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148660158|ref|YP_001281681.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis H37Ra]
 gi|148821588|ref|YP_001286342.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis F11]
 gi|224988777|ref|YP_002643464.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|253797315|ref|YP_003030316.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254230748|ref|ZP_04924075.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
C]
 gi|254363354|ref|ZP_04979400.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|289441771|ref|ZP_06431515.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289552641|ref|ZP_06441851.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
 gi|289568305|ref|ZP_06448532.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
 gi|289572977|ref|ZP_06453204.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
 gi|289760506|ref|ZP_06519884.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|298523867|ref|ZP_07011276.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308231540|ref|ZP_07663881.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu001]
 gi|308370391|ref|ZP_07666921.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu003]
 gi|308373989|ref|ZP_07667688.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu006]
 gi|308375146|ref|ZP_07667952.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu007]
 gi|308376380|ref|ZP_07668257.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu008]
 gi|308377412|ref|ZP_07668507.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu009]
 gi|308378624|ref|ZP_07668791.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu010]
 gi|308379768|ref|ZP_07669043.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu011]
 gi|1817708|emb|CAB06599.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|13879904|gb|AAK44626.1| hypothetical protein MT0404 [Mycobacterium tuberculosis CDC1551]
 gi|31617155|emb|CAD93262.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491952|emb|CAL70415.1| Conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|124599807|gb|EAY58817.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
C]
 gi|134148868|gb|EBA40913.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|148504310|gb|ABQ72119.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
H37Ra]
 gi|148720115|gb|ABR04740.1| 13E12 repeat family protein [Mycobacterium tuberculosis F11]
 gi|224771890|dbj|BAH24696.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|253318818|gb|ACT23421.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289414690|gb|EFD11930.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289437273|gb|EFD19766.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
 gi|289537408|gb|EFD41986.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
 gi|289542058|gb|EFD45707.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
 gi|289708012|gb|EFD72028.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|298493661|gb|EFI28955.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216839|gb|EFO76238.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu001]
 gi|308332140|gb|EFP20991.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu003]
 gi|308343405|gb|EFP32256.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu006]
 gi|308347214|gb|EFP36065.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu007]
 gi|308351242|gb|EFP40093.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu008]
 gi|308355796|gb|EFP44647.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu009]
 gi|308359715|gb|EFP48566.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu010]
 gi|308363658|gb|EFP52509.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu011]
 gi|326902218|gb|EGE49151.1| 13E12 repeat family protein [Mycobacterium tuberculosis W-148]
 gi|328457102|gb|AEB02525.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
 gi|341600321|emb|CCC62991.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Moreau RDJ]
 gi|344218209|gb|AEM98839.1| 13E12 repeat family protein [Mycobacterium tuberculosis CTRI-2]
Length=441

 Score =  187 bits (476),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 95/110 (87%), Positives = 98/110 (90%), Gaps = 4/110 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  324  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  383

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+G
Sbjct  384  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHG  429


>gi|308371659|ref|ZP_07667218.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu004]
 gi|308372878|ref|ZP_07667469.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu005]
 gi|308335924|gb|EFP24775.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu004]
 gi|308339528|gb|EFP28379.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu005]
Length=441

 Score =  187 bits (476),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 95/110 (87%), Positives = 98/110 (90%), Gaps = 4/110 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  324  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  383

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
            QRTAMMPRRASTR QNRAH IAAERHRNHQARRIA    Q A  A ET+G
Sbjct  384  QRTAMMPRRASTRTQNRAHCIAAERHRNHQARRIA----QAAVIATETHG  429


>gi|289748879|ref|ZP_06508257.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
 gi|289689466|gb|EFD56895.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
Length=97

 Score =  143 bits (361),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 74/89 (84%), Positives = 78/89 (88%), Gaps = 4/89 (4%)

Query  22   LPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRGQRTAMMPRRASTRAQNRAHYI  81
            +PG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRGQRTAMMPRRASTR QNRAH I
Sbjct  1    MPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRGQRTAMMPRRASTRTQNRAHCI  60

Query  82   AAERHRNHQARRIAHVVTQTATTAPETNG  110
            AAERHRNHQARRIA    Q A  A ET+G
Sbjct  61   AAERHRNHQARRIA----QAAVIATETHG  85


>gi|240168892|ref|ZP_04747551.1| 13E12 repeat-containing protein [Mycobacterium kansasii ATCC 
12478]
Length=503

 Score =  137 bits (345),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 69/122 (57%), Positives = 82/122 (68%), Gaps = 7/122 (5%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            L+ TFWGWR +QLPDGTVIWT P   TYVTTPGSALLFP+LC PTG+ PR     + R G
Sbjct  389  LVKTFWGWRDKQLPDGTVIWTSPSGDTYVTTPGSALLFPSLCAPTGEAPRQASQASARCG  448

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDDPP  120
             RTA +P RA++RAQNRA YIAAER +NHQ R       +      ++   P   DD+PP
Sbjct  449  DRTAKIPLRATSRAQNRARYIAAERRKNHQIR-------ERVAAQQQSEDIPVVVDDEPP  501

Query  121  PF  122
            PF
Sbjct  502  PF  503


>gi|289752422|ref|ZP_06511800.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis EAS054]
 gi|289693009|gb|EFD60438.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis EAS054]
Length=442

 Score =  133 bits (335),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 63/69 (92%), Positives = 66/69 (96%), Gaps = 0/69 (0%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LLATF GWRAQQLPDGTVIWTLPG+QTYVTTPGSALLFPALCTPTGDPP P+PARADRRG
Sbjct  324  LLATFCGWRAQQLPDGTVIWTLPGNQTYVTTPGSALLFPALCTPTGDPPAPEPARADRRG  383

Query  61   QRTAMMPRR  69
            QRTAMMP +
Sbjct  384  QRTAMMPHK  392


>gi|296164577|ref|ZP_06847145.1| possible 13e12 repeat-containing protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900057|gb|EFG79495.1| possible 13e12 repeat-containing protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=285

 Score =  133 bits (334),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 67/92 (73%), Positives = 70/92 (77%), Gaps = 0/92 (0%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LL TFWGWR +QLPDGT+IW LP   TYVTTPGSALLFP LC PTGDPP      A+R G
Sbjct  163  LLKTFWGWRDEQLPDGTLIWRLPDGHTYVTTPGSALLFPTLCAPTGDPPLTPVPVAERCG  222

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQAR  92
            QRTAMMP R  TRAQNRA  IA ERHRN QAR
Sbjct  223  QRTAMMPLRTRTRAQNRAQRIATERHRNRQAR  254


>gi|308372850|ref|ZP_07430129.2| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu005]
 gi|308339646|gb|EFP28497.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu005]
Length=448

 Score =  132 bits (331),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 74/121 (62%), Positives = 88/121 (73%), Gaps = 4/121 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  330  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  388

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPDPDDD  118
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+GPPPD +D 
Sbjct  389  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHGPPPDHNDG  447

Query  119  P  119
            P
Sbjct  448  P  448


>gi|296167887|ref|ZP_06850068.1| possible 13e12 repeat-containing protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896945|gb|EFG76570.1| possible 13e12 repeat-containing protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=285

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 66/92 (72%), Positives = 69/92 (75%), Gaps = 0/92 (0%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LL TFWGWR +QLPDGT+IW LP   TYVTTPGSALLFP LC PTGDPP      A+R G
Sbjct  163  LLKTFWGWRDEQLPDGTLIWRLPDGHTYVTTPGSALLFPTLCAPTGDPPLTPVPVAERCG  222

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQAR  92
            QRTAMMP R  TRAQNRA  IA ERH N QAR
Sbjct  223  QRTAMMPLRTRTRAQNRAQRIATERHHNRQAR  254


>gi|308375115|ref|ZP_07442750.2| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu007]
 gi|308347418|gb|EFP36269.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu007]
Length=443

 Score =  128 bits (321),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 72/116 (63%), Positives = 85/116 (74%), Gaps = 4/116 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  330  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  388

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPPD  114
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+GPPPD
Sbjct  389  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHGPPPD  443


>gi|308377383|ref|ZP_07478941.2| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu009]
 gi|308355994|gb|EFP44845.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu009]
Length=442

 Score =  125 bits (315),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 71/115 (62%), Positives = 84/115 (74%), Gaps = 4/115 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  330  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  388

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPPP  113
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+GPPP
Sbjct  389  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHGPPP  442


>gi|308395168|ref|ZP_07491929.2| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu012]
 gi|308367461|gb|EFP56312.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu012]
Length=394

 Score =  124 bits (310),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 70/114 (62%), Positives = 83/114 (73%), Gaps = 4/114 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  283  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  341

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPP  112
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+GPP
Sbjct  342  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHGPP  394


>gi|308376350|ref|ZP_07438537.2| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu008]
 gi|308351363|gb|EFP40214.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu008]
Length=444

 Score =  124 bits (310),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 70/114 (62%), Positives = 83/114 (73%), Gaps = 4/114 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  333  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  391

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGPP  112
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+GPP
Sbjct  392  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHGPP  444


>gi|342860741|ref|ZP_08717391.1| hypothetical protein MCOL_17758 [Mycobacterium colombiense CECT 
3035]
 gi|342131765|gb|EGT85022.1| hypothetical protein MCOL_17758 [Mycobacterium colombiense CECT 
3035]
Length=493

 Score =  122 bits (306),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/93 (69%), Positives = 70/93 (76%), Gaps = 0/93 (0%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            L+ TFWGWR +QLPDGTVIWTLP   TYVTTPGSALLFP LCTPTGD   P P R DR  
Sbjct  376  LMKTFWGWRDRQLPDGTVIWTLPDQHTYVTTPGSALLFPQLCTPTGDVIIPPPPRPDRCT  435

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARR  93
             RTAMMPRR  TRAQ+RA  +A ER  N +AR+
Sbjct  436  DRTAMMPRRTRTRAQHRATRVATERKHNREARQ  468


>gi|308371633|ref|ZP_07425595.2| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu004]
 gi|308336042|gb|EFP24893.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu004]
Length=469

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 69/113 (62%), Positives = 82/113 (73%), Gaps = 4/113 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  359  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  417

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNGP  111
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+GP
Sbjct  418  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHGP  469


>gi|336461519|gb|EGO40387.1| protein of unknown function DUF222/HNH endonuclease [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=489

 Score =  122 bits (305),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 64/98 (66%), Positives = 69/98 (71%), Gaps = 4/98 (4%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTG--DPPRPDPARADR  58
            LL TFWGWR +QLPDGTVIWTLP   TYVTTPGSALLFP LCTPTG   P +PD     R
Sbjct  375  LLKTFWGWRDRQLPDGTVIWTLPDGDTYVTTPGSALLFPTLCTPTGAVSPAKPDTEH--R  432

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAH  96
             G+RTAMMP R  TRA NRAH I  ER+ N + R   H
Sbjct  433  CGERTAMMPLRRHTRAHNRAHRITTERNHNRRTRLTTH  470


>gi|118466571|ref|YP_882639.1| hypothetical protein MAV_3457 [Mycobacterium avium 104]
 gi|118167858|gb|ABK68755.1| conserved 13e12 repeat family protein [Mycobacterium avium 104]
Length=489

 Score =  121 bits (304),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 64/98 (66%), Positives = 69/98 (71%), Gaps = 4/98 (4%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTG--DPPRPDPARADR  58
            LL TFWGWR +QLPDGTVIWTLP   TYVTTPGSALLFP LCTPTG   P +PD     R
Sbjct  375  LLKTFWGWRDRQLPDGTVIWTLPDGDTYVTTPGSALLFPTLCTPTGAVSPAKPDTEH--R  432

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAH  96
             G+RTAMMP R  TRA NRAH I  ER+ N + R   H
Sbjct  433  CGERTAMMPLRRHTRAHNRAHRITTERNHNRRTRLTTH  470


>gi|254775900|ref|ZP_05217416.1| 13e12 repeat-containing protein [Mycobacterium avium subsp. avium 
ATCC 25291]
Length=200

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 62/96 (65%), Positives = 66/96 (69%), Gaps = 0/96 (0%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRPDPARADRRG  60
            LL TFWGWR +QLPDGTVIWTLP   TYVTTPGSALLFP LCTPTG      P    R G
Sbjct  86   LLKTFWGWRDRQLPDGTVIWTLPDGDTYVTTPGSALLFPTLCTPTGAVSPAKPDTEHRCG  145

Query  61   QRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAH  96
            +RTAMMP R  TRA NRAH I  ER+ N + R   H
Sbjct  146  ERTAMMPLRRHTRAHNRAHRITTERNHNRRTRLTTH  181


>gi|308379740|ref|ZP_07487375.2| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu011]
 gi|308363848|gb|EFP52699.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu011]
Length=435

 Score =  120 bits (300),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  314  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  372

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  373  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  423


>gi|308369353|ref|ZP_07417455.2| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu002]
 gi|308370396|ref|ZP_07421356.2| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu003]
 gi|308327907|gb|EFP16758.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu002]
 gi|308332134|gb|EFP20985.1| 13E12 repeat family protein [Mycobacterium tuberculosis SUMu003]
Length=434

 Score =  120 bits (300),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  314  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  372

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  373  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  423


>gi|294996023|ref|ZP_06801714.1| hypothetical protein Mtub2_16383 [Mycobacterium tuberculosis 
210]
Length=535

 Score =  120 bits (300),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  414  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  472

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  473  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  523


>gi|339293562|gb|AEJ45673.1| hypothetical protein CCDC5079_0483 [Mycobacterium tuberculosis 
CCDC5079]
Length=521

 Score =  120 bits (300),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  400  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  458

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  459  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  509


>gi|15839908|ref|NP_334945.1| hypothetical protein MT0536 [Mycobacterium tuberculosis CDC1551]
 gi|13880045|gb|AAK44759.1| hypothetical protein MT0536 [Mycobacterium tuberculosis CDC1551]
Length=534

 Score =  120 bits (300),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  413  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  471

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  472  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  522


>gi|148821717|ref|YP_001286471.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis F11]
 gi|148720244|gb|ABR04869.1| 13E12 repeat family protein [Mycobacterium tuberculosis F11]
Length=488

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  367  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  425

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  426  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  476


>gi|340625543|ref|YP_004743995.1| hypothetical protein MCAN_05181 [Mycobacterium canettii CIPT 
140010059]
 gi|340003733|emb|CCC42858.1| conserved 13E12 repeat family protein [Mycobacterium canettii 
CIPT 140010059]
Length=503

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  382  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  440

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  441  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  491


>gi|294995093|ref|ZP_06800784.1| 13E12 repeat family protein [Mycobacterium tuberculosis 210]
Length=511

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  390  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  448

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  449  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  499


>gi|289441901|ref|ZP_06431645.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289568439|ref|ZP_06448666.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
 gi|289748819|ref|ZP_06508197.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
 gi|289749011|ref|ZP_06508389.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
 gi|289414820|gb|EFD12060.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289542193|gb|EFD45841.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
 gi|289689406|gb|EFD56835.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
 gi|289689598|gb|EFD57027.1| 13E12 repeat family protein [Mycobacterium tuberculosis T92]
Length=503

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  382  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  440

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  441  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  491


>gi|289441716|ref|ZP_06431460.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289568246|ref|ZP_06448473.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
 gi|289414635|gb|EFD11875.1| 13E12 repeat family protein [Mycobacterium tuberculosis T46]
 gi|289541999|gb|EFD45648.1| 13E12 repeat family protein [Mycobacterium tuberculosis T17]
Length=503

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  382  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  440

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  441  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  491


>gi|148821532|ref|YP_001286286.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis F11]
 gi|253797262|ref|YP_003030263.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254363304|ref|ZP_04979350.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 10 more sequence titles
 gi|254549278|ref|ZP_05139725.1| 13E12 repeat family protein [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|254549466|ref|ZP_05139913.1| 13E12 repeat family protein [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|297632821|ref|ZP_06950601.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729796|ref|ZP_06958914.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN R506]
 gi|313657125|ref|ZP_07814005.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN V2475]
 gi|134148818|gb|EBA40863.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|148720059|gb|ABR04684.1| 13E12 repeat family protein [Mycobacterium tuberculosis F11]
 gi|253318765|gb|ACT23368.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|328457049|gb|AEB02472.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339293392|gb|AEJ45503.1| hypothetical protein CCDC5079_0313 [Mycobacterium tuberculosis 
CCDC5079]
Length=511

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  390  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  448

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  449  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  499


>gi|253797447|ref|YP_003030448.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254363477|ref|ZP_04979523.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|289552769|ref|ZP_06441979.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
 8 more sequence titles
 gi|297633003|ref|ZP_06950783.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729979|ref|ZP_06959097.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN R506]
 gi|313657307|ref|ZP_07814187.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN V2475]
 gi|134148991|gb|EBA41036.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|253318950|gb|ACT23553.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289437401|gb|EFD19894.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
 gi|323721054|gb|EGB30117.1| 13E12 repeat family protein [Mycobacterium tuberculosis CDC1551A]
 gi|328457233|gb|AEB02656.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 4207]
Length=511

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  390  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  448

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  449  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  499


>gi|340625367|ref|YP_004743819.1| hypothetical protein MCAN_03381 [Mycobacterium canettii CIPT 
140010059]
 gi|340003557|emb|CCC42678.1| conserved 13E12 repeat family protein [Mycobacterium canettii 
CIPT 140010059]
Length=503

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  382  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  440

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  441  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  491


>gi|289573105|ref|ZP_06453332.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
 gi|289537536|gb|EFD42114.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
Length=301

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  180  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  238

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  239  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  289


>gi|289572922|ref|ZP_06453149.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
 gi|289537353|gb|EFD41931.1| 13E12 repeat family protein [Mycobacterium tuberculosis K85]
Length=301

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  180  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  238

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  239  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  289


>gi|289756401|ref|ZP_06515779.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis T85]
 gi|289711965|gb|EFD75977.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis T85]
Length=374

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  253  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  311

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  312  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  362


>gi|15607477|ref|NP_214850.1| 13E12 repeat family protein [Mycobacterium tuberculosis H37Rv]
 gi|15839722|ref|NP_334759.1| hypothetical protein MT0350 [Mycobacterium tuberculosis CDC1551]
 gi|148660102|ref|YP_001281625.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis H37Ra]
 8 more sequence titles
 gi|289760445|ref|ZP_06519823.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|289760637|ref|ZP_06520015.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|2276333|emb|CAB10791.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|13879847|gb|AAK44573.1| hypothetical protein MT0350 [Mycobacterium tuberculosis CDC1551]
 gi|148504254|gb|ABQ72063.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
H37Ra]
 gi|289707951|gb|EFD71967.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|289708143|gb|EFD72159.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|344218156|gb|AEM98786.1| 13E12 repeat family protein [Mycobacterium tuberculosis CTRI-2]
Length=503

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  382  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  440

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  441  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  491


>gi|15607656|ref|NP_215029.1| 13E12 repeat family protein [Mycobacterium tuberculosis H37Rv]
 gi|31791514|ref|NP_854007.1| 13E12 repeat family protein [Mycobacterium bovis AF2122/97]
 gi|31791697|ref|NP_854190.1| 13E12 repeat family protein [Mycobacterium bovis AF2122/97]
 24 more sequence titles
 gi|121636250|ref|YP_976473.1| 13e12 repeat-containing protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|121636433|ref|YP_976656.1| 13e12 repeat-containing protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148660284|ref|YP_001281807.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis H37Ra]
 gi|224988905|ref|YP_002643592.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|254230862|ref|ZP_04924189.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
C]
 gi|289756592|ref|ZP_06515970.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis T85]
 gi|298523812|ref|ZP_07011221.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298523996|ref|ZP_07011405.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|2266718|emb|CAB10751.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|31617100|emb|CAD93207.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|31617283|emb|CAD93390.1| CONSERVED 13E12 REPEAT FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491897|emb|CAL70360.1| Conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|121492080|emb|CAL70543.1| Conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|124599921|gb|EAY58931.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
C]
 gi|148504436|gb|ABQ72245.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
H37Ra]
 gi|224772018|dbj|BAH24824.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Tokyo 172]
 gi|289712156|gb|EFD76168.1| 13E12 repeat-containing protein [Mycobacterium tuberculosis T85]
 gi|298493606|gb|EFI28900.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298493790|gb|EFI29084.1| conserved 13E12 repeat family protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|326902344|gb|EGE49277.1| 13E12 repeat family protein [Mycobacterium tuberculosis W-148]
 gi|339297203|gb|AEJ49313.1| hypothetical protein CCDC5180_0476 [Mycobacterium tuberculosis 
CCDC5180]
 gi|341600266|emb|CCC62936.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Moreau RDJ]
 gi|341600449|emb|CCC63119.1| conserved 13E12 repeat family protein [Mycobacterium bovis BCG 
str. Moreau RDJ]
 gi|344218336|gb|AEM98966.1| 13E12 repeat family protein [Mycobacterium tuberculosis CTRI-2]
Length=503

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  382  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  440

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  441  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  491


>gi|326906089|gb|EGE53022.1| 13E12 repeat family protein [Mycobacterium tuberculosis W-148]
 gi|339297037|gb|AEJ49147.1| 13E12 repeat family protein [Mycobacterium tuberculosis CCDC5180]
Length=503

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  382  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  440

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  441  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  491


>gi|289752366|ref|ZP_06511744.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis EAS054]
 gi|289692953|gb|EFD60382.1| 13e12 repeat-containing protein [Mycobacterium tuberculosis EAS054]
Length=338

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  217  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  275

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  276  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  326


>gi|308395290|ref|ZP_07491932.2| hypothetical protein TMLG_01758 [Mycobacterium tuberculosis SUMu012]
 gi|308367413|gb|EFP56264.1| hypothetical protein TMLG_01758 [Mycobacterium tuberculosis SUMu012]
Length=131

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  10   LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPP-YDH  68

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  69   CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  119


>gi|289552588|ref|ZP_06441798.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
 gi|289437220|gb|EFD19713.1| 13E12 repeat family protein [Mycobacterium tuberculosis KZN 605]
Length=487

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  366  LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  424

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  425  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  475


>gi|307083006|ref|ZP_07492119.1| hypothetical protein TMLG_03662 [Mycobacterium tuberculosis SUMu012]
 gi|308367256|gb|EFP56107.1| hypothetical protein TMLG_03662 [Mycobacterium tuberculosis SUMu012]
Length=147

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  26   LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPP-YDH  84

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  85   CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  135


>gi|306787331|ref|ZP_07425653.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu004]
 gi|308335966|gb|EFP24817.1| putative HNH endonuclease domain protein [Mycobacterium tuberculosis 
SUMu004]
Length=178

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 68/112 (61%), Positives = 81/112 (73%), Gaps = 4/112 (3%)

Query  1    LLATFWGWRAQQLPDGTVIWTLPGDQTYVTTPGSALLFPALCTPTGDPPRP--DPARADR  58
            L+ TFWGWR QQLPDGT+I T P   TYV+TPGSALLFP+LC  +G  P P  DP   D 
Sbjct  57   LVKTFWGWRDQQLPDGTLILTSPSGHTYVSTPGSALLFPSLCHFSGGIPAPEADPPY-DH  115

Query  59   RGQRTAMMPRRASTRAQNRAHYIAAERHRNHQARRIAHVVTQTATTAPETNG  110
              QRTAMMP+R  TRAQ+RA+ IA ER +NH AR+ A V+TQTA  A +T+G
Sbjct  116  CDQRTAMMPKRRRTRAQDRAYRIATERRQNHAARQRAQVLTQTA-AATDTHG  166



Lambda     K      H
   0.318    0.134    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127525862838




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40