BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           21,062,489 sequences; 7,218,481,314 total letters



Query= Rv0397A Rv0397A Conserved protein 476394:476642 forward MW:8504

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15839780|ref|NP_334817.1|  hypothetical protein MT0407.1 [Myco...   166    2e-39
gi|345462034|ref|YP_004837048.1|  hypothetical protein Rv4003 [My...   145    4e-33
gi|307206943|gb|EFN84787.1|  Segmentation polarity homeobox prote...  35.4    4.4  


>gi|15839780|ref|NP_334817.1| hypothetical protein MT0407.1 [Mycobacterium tuberculosis CDC1551]
 gi|148821593|ref|YP_001286347.1| hypothetical protein TBFG_10402 [Mycobacterium tuberculosis F11]
 gi|167970789|ref|ZP_02553066.1| hypothetical protein MtubH3_23220 [Mycobacterium tuberculosis 
H37Ra]
 32 more sequence titles
 Length=82

 Score =  166 bits (420),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   MHALRLVGLAILTAIAPIAVLIGSSPAHADTDIGQPCSPEGAKLWGNPGPIYCERTADGQ  60
           MHALRLVGLAILTAIAPIAVLIGSSPAHADTDIGQPCSPEGAKLWGNPGPIYCERTADGQ
Sbjct  1   MHALRLVGLAILTAIAPIAVLIGSSPAHADTDIGQPCSPEGAKLWGNPGPIYCERTADGQ  60

Query  61  LQWVSIPAWALCVAFCDRPGGP  82
           LQWVSIPAWALCVAFCDRPGGP
Sbjct  61  LQWVSIPAWALCVAFCDRPGGP  82


>gi|345462034|ref|YP_004837048.1| hypothetical protein Rv4003 [Mycobacterium tuberculosis H37Rv]
Length=71

 Score =  145 bits (365),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  12  LTAIAPIAVLIGSSPAHADTDIGQPCSPEGAKLWGNPGPIYCERTADGQLQWVSIPAWAL  71
           +TAIAPIAVLIGSSPAHADTDIGQPCSPEGAKLWGNPGPIYCERTADGQLQWVSIPAWAL
Sbjct  1   MTAIAPIAVLIGSSPAHADTDIGQPCSPEGAKLWGNPGPIYCERTADGQLQWVSIPAWAL  60

Query  72  CVAFCDRPGGP  82
           CVAFCDRPGGP
Sbjct  61  CVAFCDRPGGP  71


>gi|307206943|gb|EFN84787.1| Segmentation polarity homeobox protein engrailed [Harpegnathos 
saltator]
Length=340

 Score = 35.4 bits (80),  Expect = 4.4, Method: Composition-based stats.
 Identities = 20/51 (40%), Positives = 26/51 (51%), Gaps = 5/51 (9%)

Query  34   GQPCSPEGAKLWGNPG-PIYCERTADGQLQWVSIPAWALCVAFCDRP-GGP  82
            G+  + E A+   N G P   + T +GQ QW   PAW  C  + DRP  GP
Sbjct  180  GESLNGESAQSGSNGGTPATQQNTTNGQCQW---PAWVYCTRYSDRPSSGP  227



Lambda     K      H
   0.322    0.140    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 176962912513




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Oct 14, 2012  4:13 PM
  Number of letters in database: 7,218,481,314
  Number of sequences in database:  21,062,489



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40