BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0398c

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607539|ref|NP_214912.1|  hypothetical protein Rv0398c [Mycob...   426    2e-117
gi|340625424|ref|YP_004743876.1|  putative secreted protein [Myco...   424    4e-117
gi|289744094|ref|ZP_06503472.1|  conserved hypothetical protein [...   423    7e-117
gi|183980718|ref|YP_001849009.1|  hypothetical protein MMAR_0695 ...   274    5e-72 
gi|240168860|ref|ZP_04747519.1|  hypothetical protein MkanA1_0608...   241    4e-62 
gi|342859124|ref|ZP_08715778.1|  hypothetical protein MCOL_09608 ...   216    1e-54 
gi|254818882|ref|ZP_05223883.1|  hypothetical protein MintA_03099...   205    3e-51 
gi|254777208|ref|ZP_05218724.1|  hypothetical protein MaviaA2_214...   203    1e-50 
gi|336460384|gb|EGO39284.1|  hypothetical protein MAPs_41820 [Myc...   196    2e-48 
gi|41409973|ref|NP_962809.1|  hypothetical protein MAP3875c [Myco...   194    7e-48 
gi|296167854|ref|ZP_06850037.1|  conserved hypothetical protein [...   193    1e-47 
gi|118462232|ref|YP_883897.1|  hypothetical protein MAV_4770 [Myc...   189    3e-46 
gi|183980258|ref|YP_001848549.1|  hypothetical protein MMAR_0225 ...   179    2e-43 
gi|118619922|ref|YP_908254.1|  hypothetical protein MUL_4889 [Myc...   161    5e-38 
gi|340345909|ref|ZP_08669039.1|  hypothetical protein HMPREF9136_...  39.7    0.29  
gi|71905867|ref|YP_283454.1|  PAS [Dechloromonas aromatica RCB] >...  38.5    0.65  
gi|333990313|ref|YP_004522927.1|  hypothetical protein JDM601_167...  38.5    0.72  
gi|17230345|ref|NP_486893.1|  UDP-glucose 4-epimerase [Nostoc sp....  37.4    1.6   
gi|197116672|ref|YP_002137099.1|  Cache/HAMP/PAS/PAC domain-conta...  35.0    6.8   


>gi|15607539|ref|NP_214912.1| hypothetical protein Rv0398c [Mycobacterium tuberculosis H37Rv]
 gi|15839781|ref|NP_334818.1| hypothetical protein MT0408 [Mycobacterium tuberculosis CDC1551]
 gi|31791574|ref|NP_854067.1| hypothetical protein Mb0404c [Mycobacterium bovis AF2122/97]
 68 more sequence titles
 Length=213

 Score =  426 bits (1094),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%)

Query  1    MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ  60
            MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ
Sbjct  1    MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ  60

Query  61   LFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA  120
            LFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA
Sbjct  61   LFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA  120

Query  121  YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR  180
            YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR
Sbjct  121  YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR  180

Query  181  GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG  213
            GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG
Sbjct  181  GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG  213


>gi|340625424|ref|YP_004743876.1| putative secreted protein [Mycobacterium canettii CIPT 140010059]
 gi|340003614|emb|CCC42736.1| putative secreted protein [Mycobacterium canettii CIPT 140010059]
Length=213

 Score =  424 bits (1090),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 212/213 (99%), Positives = 213/213 (100%), Gaps = 0/213 (0%)

Query  1    MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ  60
            MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ
Sbjct  1    MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ  60

Query  61   LFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA  120
            LFSFG+PTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA
Sbjct  61   LFSFGNPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA  120

Query  121  YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR  180
            YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR
Sbjct  121  YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR  180

Query  181  GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG  213
            GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG
Sbjct  181  GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG  213


>gi|289744094|ref|ZP_06503472.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289756466|ref|ZP_06515844.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294995154|ref|ZP_06800845.1| secreted protein [Mycobacterium tuberculosis 210]
 7 more sequence titles
 Length=213

 Score =  423 bits (1088),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 212/213 (99%), Positives = 213/213 (100%), Gaps = 0/213 (0%)

Query  1    MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ  60
            MGVIARVVGVAACGLSLAVLAAAPTAGA+PTGALPPMTSSGSGPVIGDGDAALRQRISQQ
Sbjct  1    MGVIARVVGVAACGLSLAVLAAAPTAGADPTGALPPMTSSGSGPVIGDGDAALRQRISQQ  60

Query  61   LFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA  120
            LFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA
Sbjct  61   LFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARA  120

Query  121  YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR  180
            YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR
Sbjct  121  YRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRR  180

Query  181  GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG  213
            GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG
Sbjct  181  GEEGYFVLLAGTASDFCSAPNANYRTTASSWPG  213


>gi|183980718|ref|YP_001849009.1| hypothetical protein MMAR_0695 [Mycobacterium marinum M]
 gi|183174044|gb|ACC39154.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=216

 Score =  274 bits (701),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 155/209 (75%), Positives = 171/209 (82%), Gaps = 1/209 (0%)

Query  4    IARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQLFS  63
            I  +  VA C LSLA LA   TA A+PT  LPPMTS+GSGP+IG G  +L Q ISQQL S
Sbjct  8    IRCIATVATCVLSLATLAVPATAAADPTVTLPPMTSTGSGPIIGGGSTSLGQLISQQLIS  67

Query  64   FGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARAYRR  123
            F  P +QEVDGSDAAQF+ AAA V DR++ASVFL LQR LGCQ + AGSG GFGARAYRR
Sbjct  68   FDKPDIQEVDGSDAAQFVAAAAGVDDRELASVFLLLQRALGCQPDPAGSGTGFGARAYRR  127

Query  124  TDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRRGEE  183
            +DGQWGGAMLV+AKSTV+DVDALKAC+KSGWR+ATAG P SMCN+GWTYPPF   RRG E
Sbjct  128  SDGQWGGAMLVIAKSTVTDVDALKACIKSGWRRATAGGPDSMCNSGWTYPPFTG-RRGGE  186

Query  184  GYFVLLAGTASDFCSAPNANYRTTASSWP  212
            GYFVLLAGTASDFCS PNA YRTTASSWP
Sbjct  187  GYFVLLAGTASDFCSVPNAKYRTTASSWP  215


>gi|240168860|ref|ZP_04747519.1| hypothetical protein MkanA1_06085 [Mycobacterium kansasii ATCC 
12478]
Length=208

 Score =  241 bits (616),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 127/206 (62%), Positives = 148/206 (72%), Gaps = 3/206 (1%)

Query  7    VVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQLFSFGD  66
            VV VA CGLSL  L  AP A A+PT  LPPMTS+GSGP+I    AA    +SQQL    +
Sbjct  6    VVAVAVCGLSLGALTVAPKAAADPTVTLPPMTSTGSGPMIAGTGAA--PGLSQQLTGLNN  63

Query  67   PTVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARAYRRTDG  126
            P VQEVDGSDAAQFITAAA+V D  +A+ F+ L R L CQ N AGSG  FGARAYRR DG
Sbjct  64   PNVQEVDGSDAAQFITAAASVTDPQLAAPFVLLHRALACQGNGAGSGPPFGARAYRRADG  123

Query  127  QWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRRGEEGYF  186
            +WGGAMLV AKS  ++VDAL +CVK+ WR++TAG   +MCNNGWT P   D RR  E Y+
Sbjct  124  RWGGAMLVAAKSATANVDALVSCVKTNWRRSTAGGENAMCNNGWTTPTDGDLRR-TEVYY  182

Query  187  VLLAGTASDFCSAPNANYRTTASSWP  212
            +LLAGTA+DFC+  NA Y T AS WP
Sbjct  183  ILLAGTAADFCTGLNARYATNASGWP  208


>gi|342859124|ref|ZP_08715778.1| hypothetical protein MCOL_09608 [Mycobacterium colombiense CECT 
3035]
 gi|342133365|gb|EGT86568.1| hypothetical protein MCOL_09608 [Mycobacterium colombiense CECT 
3035]
Length=206

 Score =  216 bits (551),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 123/213 (58%), Positives = 148/213 (70%), Gaps = 9/213 (4%)

Query  1    MGVIARVVGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQ  60
            M + AR +   A  L+L      P AGA+       MTSSG+GP+IG G AA  Q ISQQ
Sbjct  1    MRITARAMRTMAALLALGATTGMPAAGADAALPA--MTSSGAGPIIGGGSAA-GQGISQQ  57

Query  61   LFSFGDP-TVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGAR  119
            LFSFG+P TVQEVDGSDAAQFITAAA  A++ +A  F  L+R L CQ N AG    FGAR
Sbjct  58   LFSFGNPNTVQEVDGSDAAQFITAAAGSANQQLAGPFALLRRALTCQTNNAG----FGAR  113

Query  120  AYRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTR  179
            AYRR DGQWGGAMLV AKS   +VD+L AC K+ WR+ TAG   +MCNNGWT P   ++R
Sbjct  114  AYRRNDGQWGGAMLVAAKSATPNVDSLVACAKTNWRRTTAGGEAAMCNNGWTTPTSYESR  173

Query  180  RGEEGYFVLLAGTASDFCSAPNANYRTTASSWP  212
            RGE  Y++LLAGTA+DFCS  NA Y++ A++WP
Sbjct  174  RGET-YYILLAGTAADFCSDLNAKYKSDANAWP  205


>gi|254818882|ref|ZP_05223883.1| hypothetical protein MintA_03099 [Mycobacterium intracellulare 
ATCC 13950]
Length=211

 Score =  205 bits (522),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 108/175 (62%), Positives = 129/175 (74%), Gaps = 7/175 (4%)

Query  39   SSGSGPVIGDGDAALRQRISQQLFSFGDPTV-QEVDGSDAAQFITAAAAVADRDVASVFL  97
            SSGSGP+IG G AA  Q I+QQLFSFG+P V QEVDGSDAAQFIT+AA  A+  +A  F 
Sbjct  42   SSGSGPIIGAGSAAA-QGIAQQLFSFGNPNVVQEVDGSDAAQFITSAAGAANPQLAGPFS  100

Query  98   PLQRVLGCQQNTAGSGAGFGARAYRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKA  157
             L+R L CQ + +G    FGARAYRR+DGQWGGAMLV AKS    +D L  CVK+ WR+ 
Sbjct  101  LLRRALACQTDNSG----FGARAYRRSDGQWGGAMLVAAKSATPSLDGLVGCVKTNWRRT  156

Query  158  TAGTPTSMCNNGWTYPPFADTRRGEEGYFVLLAGTASDFCSAPNANYRTTASSWP  212
             AG  T+MCNNGWT P   D+RRGE  Y++LLAGTA+DFCS  NA Y++ AS+WP
Sbjct  157  AAGGETAMCNNGWTTPTSYDSRRGET-YYILLAGTAADFCSDLNAKYKSDASAWP  210


>gi|254777208|ref|ZP_05218724.1| hypothetical protein MaviaA2_21414 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=206

 Score =  203 bits (517),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 109/177 (62%), Positives = 129/177 (73%), Gaps = 7/177 (3%)

Query  37   MTSSGSGPVIGDGDAALRQRISQQLFSFGDP-TVQEVDGSDAAQFITAAAAVADRDVASV  95
            MTS GS P+IG G AA  Q ISQQLFSFG+P  VQE+DGSDAAQFITAAA  A++ +A+ 
Sbjct  35   MTSGGSRPIIGGGSAAA-QGISQQLFSFGNPGVVQEIDGSDAAQFITAAAGAANQQLAAP  93

Query  96   FLPLQRVLGCQQNTAGSGAGFGARAYRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWR  155
            F  L+R L  Q N AG    FGARAYRR DGQWGGAMLV AKS     D L AC K+ WR
Sbjct  94   FSLLRRALTYQDNNAG----FGARAYRRNDGQWGGAMLVAAKSATPSPDNLAACAKTNWR  149

Query  156  KATAGTPTSMCNNGWTYPPFADTRRGEEGYFVLLAGTASDFCSAPNANYRTTASSWP  212
            +ATAG  T+MCN+GWT P   ++RRGE  Y++LLAGTA+DFCS  NA Y++ A+ WP
Sbjct  150  RATAGGETAMCNSGWTTPTSYESRRGET-YYILLAGTAADFCSDLNAKYKSDATGWP  205


>gi|336460384|gb|EGO39284.1| hypothetical protein MAPs_41820 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=206

 Score =  196 bits (498),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 101/159 (64%), Positives = 119/159 (75%), Gaps = 6/159 (3%)

Query  55   QRISQQLFSFGDP-TVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSG  113
            Q ISQQLFSFG+P  VQEVDGSDAAQFITAAA  A++ +A+ F  L+R L CQ N AG  
Sbjct  52   QAISQQLFSFGNPGVVQEVDGSDAAQFITAAAGAANQQLAAPFSLLRRALTCQDNNAG--  109

Query  114  AGFGARAYRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYP  173
              FGARAYRR DGQWGGAMLVVAKS     D L AC K+ WR+ATAG  T+MCN+GWT P
Sbjct  110  --FGARAYRRNDGQWGGAMLVVAKSATPSPDNLAACAKTNWRRATAGGETAMCNSGWTTP  167

Query  174  PFADTRRGEEGYFVLLAGTASDFCSAPNANYRTTASSWP  212
               ++RRGE  Y++LLAGTA+DFCS  NA Y++ A+ WP
Sbjct  168  TSYESRRGET-YYILLAGTAADFCSDLNAKYKSDATGWP  205


>gi|41409973|ref|NP_962809.1| hypothetical protein MAP3875c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398806|gb|AAS06425.1| hypothetical protein MAP_3875c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=206

 Score =  194 bits (493),  Expect = 7e-48, Method: Compositional matrix adjust.
 Identities = 100/159 (63%), Positives = 118/159 (75%), Gaps = 6/159 (3%)

Query  55   QRISQQLFSFGDP-TVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSG  113
            Q ISQQLFSFG+P  VQEVDGSDAAQFITAAA  A++ +A+ F  L+R L CQ N AG  
Sbjct  52   QAISQQLFSFGNPGVVQEVDGSDAAQFITAAAGAANQQLAAPFSLLRRALTCQDNNAG--  109

Query  114  AGFGARAYRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYP  173
              FGARAYRR DGQWGGAMLV AKS     D L AC K+ WR+ATAG  T+MCN+GWT P
Sbjct  110  --FGARAYRRNDGQWGGAMLVAAKSATPSPDNLAACAKTNWRRATAGGETAMCNSGWTTP  167

Query  174  PFADTRRGEEGYFVLLAGTASDFCSAPNANYRTTASSWP  212
               ++RRGE  Y++LLAGTA+DFCS  NA Y++ A+ WP
Sbjct  168  TSYESRRGET-YYILLAGTAADFCSDLNAKYKSDATGWP  205


>gi|296167854|ref|ZP_06850037.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896979|gb|EFG76602.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=206

 Score =  193 bits (491),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 110/184 (60%), Positives = 134/184 (73%), Gaps = 8/184 (4%)

Query  29   EPTGALPPMTSSGSGPVIGDGDAALRQRISQQLFSFGDPTVQEVDGSDAAQFITAAAAVA  88
            +PT  LPPM SSG GP+IG G  A    I+QQLF FG P VQEVDGSDAAQFITAAA  A
Sbjct  30   DPTVTLPPMASSGGGPIIGGGSNA---GIAQQLFGFGAPNVQEVDGSDAAQFITAAAGSA  86

Query  89   DRDVASVFLPLQRVLGCQQNTAGSGAGFGARAYRRTDGQWGGAMLVVAKSTVSDVDALKA  148
            +  +A+ F  ++R L CQ N AG    FGARAYRRTDGQWGGAM+V AKS  S++DAL A
Sbjct  87   NPQLAAPFSLMRRALACQPNDAG----FGARAYRRTDGQWGGAMVVAAKSATSNLDALVA  142

Query  149  CVKSGWRKATAGTPTSMCNNGWTYPPFADTRRGEEGYFVLLAGTASDFCSAPNANYRTTA  208
            C K+ WR+ATAG  +SMCN+GW+ P   ++RRGE  Y+VLLAGTA DFC+A N  ++  +
Sbjct  143  CAKTNWRRATAGNQSSMCNSGWSTPNTYESRRGET-YYVLLAGTADDFCTAVNGKFKDNS  201

Query  209  SSWP  212
            + WP
Sbjct  202  NGWP  205


>gi|118462232|ref|YP_883897.1| hypothetical protein MAV_4770 [Mycobacterium avium 104]
 gi|118163519|gb|ABK64416.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=206

 Score =  189 bits (479),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 98/159 (62%), Positives = 117/159 (74%), Gaps = 6/159 (3%)

Query  55   QRISQQLFSFGDP-TVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSG  113
            Q ISQQLFSFG+P  VQE+DGSDAAQFITAAA  A++ +A+ F  L+R L CQ N AG  
Sbjct  52   QGISQQLFSFGNPGVVQEIDGSDAAQFITAAAGAANQQLAAPFSLLRRALTCQDNNAG--  109

Query  114  AGFGARAYRRTDGQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYP  173
              FGARAYRR DGQWGGAMLV AKS     D L AC K+ WR+ATAG  T+MCN+G T P
Sbjct  110  --FGARAYRRNDGQWGGAMLVAAKSATPSPDNLAACAKTNWRRATAGGETAMCNSGCTTP  167

Query  174  PFADTRRGEEGYFVLLAGTASDFCSAPNANYRTTASSWP  212
               ++RRGE  Y++LLAGTA+DFCS  NA Y++ A+ WP
Sbjct  168  TSYESRRGET-YYILLAGTAADFCSDLNAKYKSDATGWP  205


>gi|183980258|ref|YP_001848549.1| hypothetical protein MMAR_0225 [Mycobacterium marinum M]
 gi|183173584|gb|ACC38694.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=206

 Score =  179 bits (454),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 105/206 (51%), Positives = 136/206 (67%), Gaps = 7/206 (3%)

Query  8    VGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQLFSFGDP  67
            + +AA  L    +  AP   A P   LPP+ S+G GP+IG GD A + RI++QL S G+ 
Sbjct  7    MNIAAWVLCAGAVVGAPPVQAAPGAVLPPIPSTGGGPIIGGGDEAAQSRIARQLTSVGNA  66

Query  68   TVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQ-NTAGSGAGFGARAYRRTDG  126
             VQE DG+DAA FI  +A VAD  +AS F+PLQR LGCQ+ NT+     FGARAYRR+DG
Sbjct  67   DVQEGDGADAASFIMDSARVADSRLASAFVPLQRALGCQKVNTS-----FGARAYRRSDG  121

Query  127  QWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTRRGEEGYF  186
             WGGAMLV+A+S  SD+ AL  C++S W  ATAG   +MC +GWTYP      R  E Y 
Sbjct  122  GWGGAMLVIAESATSDMQALTGCIRSVWPAATAGGSNAMCAHGWTYPTSGQDHR-PETYH  180

Query  187  VLLAGTASDFCSAPNANYRTTASSWP  212
            +LLAGTA+DFC+  + +Y   A++WP
Sbjct  181  ILLAGTAADFCAKFDEDYANFATNWP  206


>gi|118619922|ref|YP_908254.1| hypothetical protein MUL_4889 [Mycobacterium ulcerans Agy99]
 gi|118572032|gb|ABL06783.1| conserved hypothetical secreted protein [Mycobacterium ulcerans 
Agy99]
Length=207

 Score =  161 bits (408),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 104/213 (49%), Positives = 133/213 (63%), Gaps = 14/213 (6%)

Query  8    VGVAACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQLFSFGDP  67
            + +AA  L    +  AP   A P   LPP+ S+G GP+IG GD A + RI++QL S G+ 
Sbjct  1    MNIAAWVLCAGAVVGAPPVQAAPGAVLPPIPSTGGGPIIGGGDEAAQSRIARQLMSVGNA  60

Query  68   TVQEVDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQ-NTAGSGAGFGARAYRRTD-  125
             VQE DG+DAA FI  +A VAD  +AS F PLQR LGCQ+ NT+     FGARAYRR+D 
Sbjct  61   DVQEGDGADAASFIMDSAQVADSRLASAFAPLQRALGCQKVNTS-----FGARAYRRSDG  115

Query  126  ------GQWGGAMLVVAKSTVSDVDALKACVKSGWRKATAGTPTSMCNNGWTYPPFADTR  179
                  G  GG MLV+AKS  SD+ AL  C++S W  ATAG   +MC +GWTYP      
Sbjct  116  GGGGGGGGGGGGMLVIAKSATSDMQALTGCIRSVWPAATAGGSNAMCAHGWTYPTSGQDH  175

Query  180  RGEEGYFVLLAGTASDFCSAPNANYRTTASSWP  212
            R  E Y +LLAGTA+DFC+  + +Y   A++WP
Sbjct  176  R-PETYHILLAGTAADFCAKLDEDYANFATNWP  207


>gi|340345909|ref|ZP_08669039.1| hypothetical protein HMPREF9136_0036 [Prevotella dentalis DSM 
3688]
 gi|339612896|gb|EGQ17692.1| hypothetical protein HMPREF9136_0036 [Prevotella dentalis DSM 
3688]
Length=996

 Score = 39.7 bits (91),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 42/125 (34%), Positives = 53/125 (43%), Gaps = 23/125 (18%)

Query  26   AGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQLFSFGDPTVQEVDGSDAAQFITAAA  85
            A A PT  LP    SG   V  +G    RQR ++ L+  G PTV  ++ SD   F T   
Sbjct  29   AVARPTSYLP----SGLDIVCING----RQRYTRALY--GGPTVFRLETSDRPVFATYYN  78

Query  86   AVADRD------VASVFLPLQRVLGCQQNTAGSGAGFGARAYRRTDGQWGGAMLVVAKST  139
                R       V +  LPL     C+    G     G R YR  D QWGG  L V  + 
Sbjct  79   KGGHRHIDFALRVGTAKLPLDSTAWCEARYQG-----GRRTYRLRDPQWGGGELHV--TA  131

Query  140  VSDVD  144
            ++D D
Sbjct  132  LADAD  136


>gi|71905867|ref|YP_283454.1| PAS [Dechloromonas aromatica RCB]
 gi|71845488|gb|AAZ44984.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica 
RCB]
Length=673

 Score = 38.5 bits (88),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 26/85 (31%), Positives = 39/85 (46%), Gaps = 5/85 (5%)

Query  18   AVLAAAPTAGAEPTGALP----PMTSSGSGPVIGDGDAALRQRISQQLFSFGDPTVQEVD  73
            +VL A P A  EP   LP     +   G   ++ + D  +R+ + QQL   G P ++  D
Sbjct  527  SVLMALPLAAREPDIDLPGEEAALPHGGELVLLVEDDPNVRRVVRQQLIDLGHPVIEAED  586

Query  74   GSDAAQFITAAAAVADRDVASVFLP  98
            GS A   I     +A   V+ V +P
Sbjct  587  GSQALDMIDQIHDIA-VVVSDVIMP  610


>gi|333990313|ref|YP_004522927.1| hypothetical protein JDM601_1673 [Mycobacterium sp. JDM601]
 gi|333486281|gb|AEF35673.1| hypothetical protein JDM601_1673 [Mycobacterium sp. JDM601]
Length=100

 Score = 38.5 bits (88),  Expect = 0.72, Method: Compositional matrix adjust.
 Identities = 18/52 (35%), Positives = 27/52 (52%), Gaps = 0/52 (0%)

Query  72   VDGSDAAQFITAAAAVADRDVASVFLPLQRVLGCQQNTAGSGAGFGARAYRR  123
            +DG    Q    A A  ++D+ ++  PL +V+G + N  G    FG R YRR
Sbjct  3    IDGHAIGQLDYIADAAEEQDLVALIRPLSQVIGVEVNAYGPADTFGERTYRR  54


>gi|17230345|ref|NP_486893.1| UDP-glucose 4-epimerase [Nostoc sp. PCC 7120]
 gi|17131947|dbj|BAB74552.1| UDP-glucose 4-epimerase [Nostoc sp. PCC 7120]
Length=336

 Score = 37.4 bits (85),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 33/111 (30%), Positives = 46/111 (42%), Gaps = 11/111 (9%)

Query  12   ACGLSLAVLAAAPTAGAEPTGALPPMTSSGSGPVIGDGDAALRQRISQQLFSFGDPTVQE  71
            A  L   +L     AGAEP G L  MT   S  +    DAAL++R+  ++F    PT   
Sbjct  159  ASDLRYVILRYFNVAGAEPGGRLGQMTKDASHLIRVTCDAALKRRLGVKIFGTDFPT---  215

Query  72   VDGSDAAQFITAAAAVADRDVASVFLPL---QRVLGCQQNTAGSGAGFGAR  119
             DG+    +I           A V+L      ++L C     G G G+  R
Sbjct  216  PDGTAIRDYIHVEDLATAHLDALVYLEQGNSSQILNC-----GYGQGYSVR  261


>gi|197116672|ref|YP_002137099.1| Cache/HAMP/PAS/PAC domain-containing sensor histidine kinase 
response regulator [Geobacter bemidjiensis Bem]
 gi|197086032|gb|ACH37303.1| sensor histidine kinase response regulator, Cache, HAMP, PAS, 
PAC, PAS and PAC domain-containing protein [Geobacter bemidjiensis 
Bem]
Length=1113

 Score = 35.0 bits (79),  Expect = 6.8, Method: Composition-based stats.
 Identities = 17/51 (34%), Positives = 26/51 (51%), Gaps = 0/51 (0%)

Query  48    DGDAALRQRISQQLFSFGDPTVQEVDGSDAAQFITAAAAVADRDVASVFLP  98
             + DA +R+ + + L  FG   ++ VDG DA Q    AAA     +  V +P
Sbjct  995   EDDAVIREMVGELLEEFGYRVIKAVDGEDAVQTFRGAAAEVQLVILDVIMP  1045



Lambda     K      H
   0.317    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 251148961304




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40