BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0401 Length=123 Score E Sequences producing significant alignments: (Bits) Value gi|15607542|ref|NP_214915.1| transmembrane protein [Mycobacteriu... 229 1e-58 gi|340625427|ref|YP_004743879.1| hypothetical protein MCAN_03991... 227 4e-58 gi|118618251|ref|YP_906583.1| hypothetical protein MUL_2824 [Myc... 171 2e-41 gi|118464541|ref|YP_883892.1| hypothetical protein MAV_4765 [Myc... 166 9e-40 gi|41409978|ref|NP_962814.1| hypothetical protein MAP3880 [Mycob... 165 2e-39 gi|254230754|ref|ZP_04924081.1| hypothetical protein TBCG_00393 ... 164 3e-39 gi|342859120|ref|ZP_08715774.1| hypothetical protein MCOL_09588 ... 159 1e-37 gi|333988972|ref|YP_004521586.1| transmembrane protein [Mycobact... 157 4e-37 gi|254777203|ref|ZP_05218719.1| hypothetical protein MaviaA2_213... 155 1e-36 gi|145221063|ref|YP_001131741.1| hypothetical protein Mflv_0459 ... 152 2e-35 gi|254818877|ref|ZP_05223878.1| hypothetical protein MintA_03074... 149 9e-35 gi|118467522|ref|YP_884661.1| transmembrane protein [Mycobacteri... 149 1e-34 gi|240168862|ref|ZP_04747521.1| hypothetical protein MkanA1_0609... 148 3e-34 gi|108797147|ref|YP_637344.1| hypothetical protein Mmcs_0167 [My... 140 5e-32 gi|126432770|ref|YP_001068461.1| hypothetical protein Mjls_0157 ... 140 5e-32 gi|120401220|ref|YP_951049.1| putative transmembrane protein [My... 135 2e-30 gi|3129989|emb|CAA18939.1| putative integral membrane protein [M... 133 1e-29 gi|15827054|ref|NP_301317.1| hypothetical protein ML0271 [Mycoba... 133 1e-29 gi|226364622|ref|YP_002782404.1| hypothetical protein ROP_52120 ... 120 5e-26 gi|169631600|ref|YP_001705249.1| hypothetical protein MAB_4526 [... 119 2e-25 gi|111022126|ref|YP_705098.1| hypothetical protein RHA1_ro05159 ... 119 2e-25 gi|296394414|ref|YP_003659298.1| hypothetical protein Srot_2011 ... 118 3e-25 gi|296167859|ref|ZP_06850042.1| transmembrane protein [Mycobacte... 115 2e-24 gi|317508338|ref|ZP_07966013.1| transmembrane protein [Segnilipa... 109 2e-22 gi|148273625|ref|YP_001223186.1| hypothetical protein CMM_2441 [... 106 1e-21 gi|312141457|ref|YP_004008793.1| integral membrane protein [Rhod... 105 2e-21 gi|325677154|ref|ZP_08156821.1| transmembrane protein [Rhodococc... 105 2e-21 gi|269127926|ref|YP_003301296.1| hypothetical protein Tcur_3725 ... 103 8e-21 gi|226304559|ref|YP_002764517.1| hypothetical protein RER_10700 ... 103 1e-20 gi|229494393|ref|ZP_04388156.1| conserved hypothetical protein [... 103 1e-20 gi|258653095|ref|YP_003202251.1| hypothetical protein Namu_2924 ... 98.2 4e-19 gi|163840318|ref|YP_001624723.1| putative integral membrane prot... 95.9 2e-18 gi|184200923|ref|YP_001855130.1| hypothetical protein KRH_12770 ... 95.1 3e-18 gi|119964114|ref|YP_947945.1| hypothetical protein AAur_2204 [Ar... 91.7 3e-17 gi|343924430|ref|ZP_08763979.1| hypothetical protein GOALK_016_0... 91.3 4e-17 gi|323356502|ref|YP_004222898.1| hypothetical protein MTES_0054 ... 89.4 2e-16 gi|170780506|ref|YP_001708838.1| transmembrane protein [Clavibac... 87.8 5e-16 gi|319949686|ref|ZP_08023719.1| putative transmembrane protein [... 87.8 5e-16 gi|116670753|ref|YP_831686.1| hypothetical protein Arth_2206 [Ar... 86.7 1e-15 gi|54027470|ref|YP_121712.1| hypothetical protein nfa54960 [Noca... 86.3 2e-15 gi|309813096|ref|ZP_07706820.1| conserved hypothetical protein [... 86.3 2e-15 gi|262204302|ref|YP_003275510.1| hypothetical protein Gbro_4484 ... 85.1 3e-15 gi|50955345|ref|YP_062633.1| hypothetical protein Lxx17840 [Leif... 81.6 3e-14 gi|336118263|ref|YP_004573032.1| hypothetical protein MLP_26150 ... 80.9 7e-14 gi|72160887|ref|YP_288544.1| hypothetical protein Tfu_0483 [Ther... 80.1 1e-13 gi|260903700|ref|ZP_05912022.1| putative transmembrane protein [... 79.7 1e-13 gi|297562841|ref|YP_003681815.1| transmembrane protein [Nocardio... 79.3 2e-13 gi|296138089|ref|YP_003645332.1| hypothetical protein Tpau_0350 ... 79.3 2e-13 gi|295395906|ref|ZP_06806091.1| transcriptional regulator/sugar ... 79.3 2e-13 gi|256371591|ref|YP_003109415.1| hypothetical protein Afer_0794 ... 78.2 4e-13 >gi|15607542|ref|NP_214915.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15839784|ref|NP_334821.1| hypothetical protein MT0411 [Mycobacterium tuberculosis CDC1551] gi|31791577|ref|NP_854070.1| transmembrane protein [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=123 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 123/123 (100%), Positives = 123/123 (100%), Gaps = 0/123 (0%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR Sbjct 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR Sbjct 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 Query 121 ADG 123 ADG Sbjct 121 ADG 123 >gi|340625427|ref|YP_004743879.1| hypothetical protein MCAN_03991 [Mycobacterium canettii CIPT 140010059] gi|340003617|emb|CCC42739.1| putative conserved transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=123 Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 122/123 (99%), Positives = 122/123 (99%), Gaps = 0/123 (0%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR Sbjct 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR Sbjct 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 Query 121 ADG 123 DG Sbjct 121 TDG 123 >gi|118618251|ref|YP_906583.1| hypothetical protein MUL_2824 [Mycobacterium ulcerans Agy99] gi|183980722|ref|YP_001849013.1| hypothetical protein MMAR_0699 [Mycobacterium marinum M] gi|118570361|gb|ABL05112.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] gi|183174048|gb|ACC39158.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=126 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/125 (72%), Positives = 107/125 (86%), Gaps = 3/125 (2%) Query 1 MRPRRALAGL---AADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARG 57 M+PRR L+ L AAD+V VLVFCAVGRRSHAEG+++ G+A+TAWPFLTGT +GW++ARG Sbjct 1 MQPRRGLSWLGWLAADIVGVLVFCAVGRRSHAEGVTIGGVASTAWPFLTGTILGWLVARG 60 Query 58 WRRPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMA 117 WRRPT++APTGVIVW+ T+ VGMVLRK SSAGVA SFV+VAS+VTAVLLLGWRA V L Sbjct 61 WRRPTSVAPTGVIVWVSTVTVGMVLRKASSAGVATSFVIVASSVTAVLLLGWRAVVGLRL 120 Query 118 PHRAD 122 HR D Sbjct 121 RHRPD 125 >gi|118464541|ref|YP_883892.1| hypothetical protein MAV_4765 [Mycobacterium avium 104] gi|118165828|gb|ABK66725.1| conserved hypothetical protein [Mycobacterium avium 104] Length=123 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 87/122 (72%), Positives = 102/122 (84%), Gaps = 1/122 (0%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 +R RR LA A DV+ VLVFCAVGRRSH EGLS TG+A TAWPFLTGT +GW+++RGWRR Sbjct 2 LRLRR-LAWFAVDVLGVLVFCAVGRRSHDEGLSATGVAVTAWPFLTGTALGWLVSRGWRR 60 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 PTA+ PTGV+VWLCT++VGM+LRK SSAGVAASFVVVAS VTA++LLGWR A L R Sbjct 61 PTAVLPTGVVVWLCTVIVGMLLRKASSAGVAASFVVVASTVTALVLLGWRVAAGLTLRRR 120 Query 121 AD 122 +D Sbjct 121 SD 122 >gi|41409978|ref|NP_962814.1| hypothetical protein MAP3880 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398811|gb|AAS06430.1| hypothetical protein MAP_3880 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460379|gb|EGO39279.1| Protein of unknown function (DUF3054) [Mycobacterium avium subsp. paratuberculosis S397] Length=123 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/122 (71%), Positives = 102/122 (84%), Gaps = 1/122 (0%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 +R RR LA A DV+ VLVFCAVGRRSH EGLS TG+A TAWPFLTGT +GW+++RGWR+ Sbjct 2 LRLRR-LAWFAVDVLGVLVFCAVGRRSHDEGLSATGVAVTAWPFLTGTALGWLVSRGWRQ 60 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 PTA+ PTGV+VWLCT++VGM+LRK SSAGVAASFVVVAS VTA++LLGWR A L R Sbjct 61 PTAVLPTGVVVWLCTVIVGMLLRKASSAGVAASFVVVASTVTALVLLGWRVAAGLTLRRR 120 Query 121 AD 122 +D Sbjct 121 SD 122 >gi|254230754|ref|ZP_04924081.1| hypothetical protein TBCG_00393 [Mycobacterium tuberculosis C] gi|124599813|gb|EAY58823.1| hypothetical protein TBCG_00393 [Mycobacterium tuberculosis C] Length=96 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%) Query 36 GLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFV 95 GLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFV Sbjct 9 GLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFV 68 Query 96 VVASAVTAVLLLGWRAAVALMAPHRADG 123 VVASAVTAVLLLGWRAAVALMAPHRADG Sbjct 69 VVASAVTAVLLLGWRAAVALMAPHRADG 96 >gi|342859120|ref|ZP_08715774.1| hypothetical protein MCOL_09588 [Mycobacterium colombiense CECT 3035] gi|342133361|gb|EGT86564.1| hypothetical protein MCOL_09588 [Mycobacterium colombiense CECT 3035] Length=112 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/109 (75%), Positives = 95/109 (88%), Gaps = 0/109 (0%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVW 72 DV+ VLVFCAVGRRSH EGL+VTG+A TAWPFLTGT +GW+++RGWRRPTA+APTGVIVW Sbjct 2 DVIGVLVFCAVGRRSHDEGLNVTGIAVTAWPFLTGTVVGWLISRGWRRPTAVAPTGVIVW 61 Query 73 LCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 L T+VVGM+LRK +SAGVAASFVVVA+ VTA+LLLGWR A L R+ Sbjct 62 LSTVVVGMLLRKATSAGVAASFVVVATTVTALLLLGWRVAAGLALRRRS 110 >gi|333988972|ref|YP_004521586.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333484940|gb|AEF34332.1| transmembrane protein [Mycobacterium sp. JDM601] Length=123 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/121 (67%), Positives = 97/121 (81%), Gaps = 0/121 (0%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 MRP+R A L DVVAVLVFCA+GRRSH EGL ++GLA TAWPFL+GT +GW+++RGWRR Sbjct 1 MRPQRDPAWLGIDVVAVLVFCALGRRSHDEGLDISGLATTAWPFLSGTVLGWLMSRGWRR 60 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 PTA+ PTGVIVW+ T++VGM LR ++ GVA SFV VAS VTAV LLGWRA L+A R Sbjct 61 PTAVVPTGVIVWISTVLVGMALRAATATGVAWSFVAVASTVTAVFLLGWRAVFELVARRR 120 Query 121 A 121 A Sbjct 121 A 121 >gi|254777203|ref|ZP_05218719.1| hypothetical protein MaviaA2_21389 [Mycobacterium avium subsp. avium ATCC 25291] Length=107 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/106 (73%), Positives = 92/106 (87%), Gaps = 0/106 (0%) Query 17 VLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTI 76 +LVFCAVGRRSH EGLS TG+A TAWPFLTGT +GW+++RGWR+PTA+ PTGV+VWLCT+ Sbjct 1 MLVFCAVGRRSHDEGLSATGVAVTAWPFLTGTALGWLVSRGWRQPTAVLPTGVVVWLCTV 60 Query 77 VVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRAD 122 +VGM+LRK SSAGVAASFVVVAS VTA++LLGWR A L R+D Sbjct 61 IVGMLLRKASSAGVAASFVVVASTVTALVLLGWRVAAGLTLRRRSD 106 >gi|145221063|ref|YP_001131741.1| hypothetical protein Mflv_0459 [Mycobacterium gilvum PYR-GCK] gi|315441966|ref|YP_004074845.1| hypothetical protein Mspyr1_02960 [Mycobacterium sp. Spyr1] gi|145213549|gb|ABP42953.1| putative conserved transmembrane protein [Mycobacterium gilvum PYR-GCK] gi|315260269|gb|ADT97010.1| hypothetical protein Mspyr1_02960 [Mycobacterium sp. Spyr1] Length=129 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/119 (69%), Positives = 93/119 (79%), Gaps = 1/119 (0%) Query 3 PRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPT 62 P AL LAAD+V V+VFC +GRRSHAEGLS+ G+A TAWPFLTGT GWVLAR W+RP Sbjct 8 PGSALKALAADLVCVVVFCTIGRRSHAEGLSLAGIAETAWPFLTGTAAGWVLARAWQRPA 67 Query 63 ALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 AL PTG+IVW+ TIVVGM+LRKV+ G A SF+VVAS TAVLLLGWR VAL R+ Sbjct 68 ALLPTGLIVWVATIVVGMLLRKVTGQGTATSFIVVASLTTAVLLLGWR-GVALAVSRRS 125 >gi|254818877|ref|ZP_05223878.1| hypothetical protein MintA_03074 [Mycobacterium intracellulare ATCC 13950] Length=123 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 88/118 (75%), Positives = 101/118 (86%), Gaps = 0/118 (0%) Query 5 RALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTAL 64 R L LA DVV VLVFCA+GRRSH EGL++TG+A TAWPFLTGT +GW+ ARGWRRPTA+ Sbjct 5 RWLGWLAVDVVGVLVFCALGRRSHDEGLNLTGIATTAWPFLTGTAVGWLAARGWRRPTAV 64 Query 65 APTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRAD 122 APTGV+VWL T+VVGMVLRK +SAGVAASFVVVA+AVTA+LLLGWR AV L R+D Sbjct 65 APTGVVVWLSTVVVGMVLRKATSAGVAASFVVVATAVTALLLLGWRVAVGLTLRRRSD 122 >gi|118467522|ref|YP_884661.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155] gi|118168809|gb|ABK69705.1| probable conserved transmembrane protein [Mycobacterium smegmatis str. MC2 155] Length=122 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/105 (70%), Positives = 90/105 (86%), Gaps = 0/105 (0%) Query 10 LAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGV 69 L AD+V V+VFC +GRRSHAEG++V G+A TAWPFL GT +GWV++RGW+RPT+LAPTG+ Sbjct 9 LLADLVCVVVFCTIGRRSHAEGITVAGVAETAWPFLVGTLVGWVVSRGWQRPTSLAPTGI 68 Query 70 IVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVA 114 VW CTIVVGM+LRK++SAG A SF+VVAS VTA LLLGWR +A Sbjct 69 AVWACTIVVGMLLRKLTSAGTAVSFIVVASLVTAALLLGWRGVLA 113 >gi|240168862|ref|ZP_04747521.1| hypothetical protein MkanA1_06095 [Mycobacterium kansasii ATCC 12478] Length=126 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/125 (68%), Positives = 101/125 (81%), Gaps = 3/125 (2%) Query 1 MRPRRAL---AGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARG 57 M+PRR L LA DVVAVL+FC +GRRSHAEG+SV G+A TAWPFL+GT GW+++RG Sbjct 1 MQPRRRLTWMGALATDVVAVLIFCTIGRRSHAEGISVAGVATTAWPFLSGTLAGWLVSRG 60 Query 58 WRRPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMA 117 WRRPT++ PTGV+VW+ T+ VGMVLRK +SAGVA SFVVVAS VT VLLLGWRAA LM Sbjct 61 WRRPTSMTPTGVVVWIGTVAVGMVLRKATSAGVAVSFVVVASTVTGVLLLGWRAAAGLML 120 Query 118 PHRAD 122 R+D Sbjct 121 RRRSD 125 >gi|108797147|ref|YP_637344.1| hypothetical protein Mmcs_0167 [Mycobacterium sp. MCS] gi|119866232|ref|YP_936184.1| hypothetical protein Mkms_0176 [Mycobacterium sp. KMS] gi|108767566|gb|ABG06288.1| putative conserved transmembrane protein [Mycobacterium sp. MCS] gi|119692321|gb|ABL89394.1| putative conserved transmembrane protein [Mycobacterium sp. KMS] Length=127 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 68/96 (71%), Positives = 81/96 (85%), Gaps = 0/96 (0%) Query 15 VAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLC 74 V V+VFC +GRRSHAEGL+V G+A TAWPFL GT +GW+ AR WRRP +L PTGV+VW+C Sbjct 18 VCVVVFCTIGRRSHAEGLTVAGIAETAWPFLAGTAVGWLAARAWRRPLSLTPTGVLVWVC 77 Query 75 TIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWR 110 T+ VGMVLRK+S GVA SFV+VAS VTA+LLLGWR Sbjct 78 TVTVGMVLRKLSGQGVAVSFVIVASLVTALLLLGWR 113 >gi|126432770|ref|YP_001068461.1| hypothetical protein Mjls_0157 [Mycobacterium sp. JLS] gi|126232570|gb|ABN95970.1| putative conserved transmembrane protein [Mycobacterium sp. JLS] Length=127 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 68/96 (71%), Positives = 81/96 (85%), Gaps = 0/96 (0%) Query 15 VAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLC 74 V V+VFC +GRRSHAEGL+V G+A TAWPFL GT +GW+ AR WRRP +L PTGV+VW+C Sbjct 18 VCVVVFCTIGRRSHAEGLTVAGIAETAWPFLAGTAVGWLAARAWRRPLSLTPTGVLVWVC 77 Query 75 TIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWR 110 T+ VGMVLRK+S GVA SFV+VAS VTA+LLLGWR Sbjct 78 TVAVGMVLRKLSGQGVAVSFVIVASLVTALLLLGWR 113 >gi|120401220|ref|YP_951049.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1] gi|119954038|gb|ABM11043.1| putative conserved transmembrane protein [Mycobacterium vanbaalenii PYR-1] Length=148 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/119 (65%), Positives = 93/119 (79%), Gaps = 3/119 (2%) Query 6 ALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALA 65 AL LAADVV V+VFCA+GRRSHAEGL+V+G+A TAWPFL+GT GW+L R WRRPT+L Sbjct 28 ALKSLAADVVCVVVFCAIGRRSHAEGLTVSGIAETAWPFLSGTAAGWLLVRAWRRPTSLI 87 Query 66 PTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVAL---MAPHRA 121 PTG++VW T+VV M+LRK + G A SF+VVAS TAVLLLGWRA V + A HR+ Sbjct 88 PTGLVVWAATVVVAMLLRKATGQGTAMSFIVVASLTTAVLLLGWRAVVQVARRRAAHRS 146 >gi|3129989|emb|CAA18939.1| putative integral membrane protein [Mycobacterium leprae] Length=122 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/121 (67%), Positives = 97/121 (81%), Gaps = 0/121 (0%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 MR +ALA LA D+VAV VFCAVGR SHAEGL+V LA T WPFLTGT IGW+ +RGW+R Sbjct 1 MRLGQALAWLATDIVAVSVFCAVGRCSHAEGLTVADLAVTLWPFLTGTAIGWLASRGWQR 60 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 PTA+ PTGV+VWLCT+VVG+ LRK SSAGV A+F+VVA++ TA L LGWRA V L+ R Sbjct 61 PTAVVPTGVVVWLCTVVVGVALRKASSAGVVANFMVVAASTTAALFLGWRAVVELILRRR 120 Query 121 A 121 + Sbjct 121 S 121 >gi|15827054|ref|NP_301317.1| hypothetical protein ML0271 [Mycobacterium leprae TN] gi|221229532|ref|YP_002502948.1| hypothetical protein MLBr_00271 [Mycobacterium leprae Br4923] gi|13092602|emb|CAC29779.1| putative membrane protein [Mycobacterium leprae] gi|219932639|emb|CAR70364.1| putative membrane protein [Mycobacterium leprae Br4923] Length=123 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/121 (67%), Positives = 97/121 (81%), Gaps = 0/121 (0%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR 60 MR +ALA LA D+VAV VFCAVGR SHAEGL+V LA T WPFLTGT IGW+ +RGW+R Sbjct 1 MRLGQALAWLATDIVAVSVFCAVGRCSHAEGLTVADLAVTLWPFLTGTAIGWLASRGWQR 60 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 PTA+ PTGV+VWLCT+VVG+ LRK SSAGV A+F+VVA++ TA L LGWRA V L+ R Sbjct 61 PTAVVPTGVVVWLCTVVVGVALRKASSAGVVANFMVVAASTTAALFLGWRAVVELILRRR 120 Query 121 A 121 + Sbjct 121 S 121 >gi|226364622|ref|YP_002782404.1| hypothetical protein ROP_52120 [Rhodococcus opacus B4] gi|226243111|dbj|BAH53459.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=125 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/122 (55%), Positives = 82/122 (68%), Gaps = 4/122 (3%) Query 4 RRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWV----LARGWR 59 ++ L LA DVV V+VFCA+GRRSH E ++TGLA TAWPFL+G +GW+ L R Sbjct 2 KKYLPALALDVVLVIVFCAIGRRSHDEANALTGLATTAWPFLSGLAVGWLATVALYRDKF 61 Query 60 RPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPH 119 + PTG++VWL T+VVGMVLR VS G A SFV+VA V AV LLGWRA ++ Sbjct 62 DAFLIVPTGIVVWLSTLVVGMVLRVVSGQGTAFSFVIVAGTVLAVFLLGWRAVARIVTKA 121 Query 120 RA 121 RA Sbjct 122 RA 123 >gi|169631600|ref|YP_001705249.1| hypothetical protein MAB_4526 [Mycobacterium abscessus ATCC 19977] gi|169243567|emb|CAM64595.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=130 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/95 (66%), Positives = 80/95 (85%), Gaps = 0/95 (0%) Query 17 VLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTI 76 + VFC +GRRSHAEG+++ G+ TAWPFL+G IGWVL+RGW RPT++ PTG+ VW+CT+ Sbjct 28 IFVFCTIGRRSHAEGITLLGVWQTAWPFLSGGAIGWVLSRGWSRPTSITPTGIAVWVCTV 87 Query 77 VVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRA 111 + GMVLR++S+ GVA SFVVVAS VTA+ LLGWRA Sbjct 88 LFGMVLRRLSNQGVAVSFVVVASLVTALFLLGWRA 122 >gi|111022126|ref|YP_705098.1| hypothetical protein RHA1_ro05159 [Rhodococcus jostii RHA1] gi|110821656|gb|ABG96940.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=126 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/122 (55%), Positives = 81/122 (67%), Gaps = 4/122 (3%) Query 4 RRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWV----LARGWR 59 ++ L LA DVV V+VFCA+GRRSH E ++TGLA TAWPFLTG +GW+ L R Sbjct 2 KKYLPALALDVVLVIVFCAIGRRSHDEANALTGLATTAWPFLTGLAVGWLATVALYRDKF 61 Query 60 RPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPH 119 + PTG+ VWL T+VVGM+LR VS G A SFV+VA V AV LLGWRA ++ Sbjct 62 DAFLIVPTGIAVWLSTLVVGMLLRVVSGQGTAFSFVLVAGTVLAVFLLGWRAVAKIVTRS 121 Query 120 RA 121 RA Sbjct 122 RA 123 >gi|296394414|ref|YP_003659298.1| hypothetical protein Srot_2011 [Segniliparus rotundus DSM 44985] gi|296181561|gb|ADG98467.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=134 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 62/117 (53%), Positives = 81/117 (70%), Gaps = 1/117 (0%) Query 5 RALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTAL 64 R LA L AD ++LVF A+GR SH + V G+ TAWPFL G +GW ++RGWR P A+ Sbjct 12 RTLAALVADAASLLVFAAIGRHSHHKHDDVFGVLGTAWPFLVGAAVGWAISRGWRAPRAI 71 Query 65 APTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 APTG+ VW+C + VGM+LR + GVA SF++VAS TAV LLGWR +A + P R+ Sbjct 72 APTGLAVWVCAVCVGMLLRVLDRQGVAWSFLLVASIATAVFLLGWR-LIAKLVPARS 127 >gi|296167859|ref|ZP_06850042.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896984|gb|EFG76607.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=120 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/116 (74%), Positives = 94/116 (82%), Gaps = 0/116 (0%) Query 5 RALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTAL 64 R L L +DVV VLVFCAVGRRSH EGL + GLAATAWPFL GT +GW+ AR WRRPTA+ Sbjct 2 RRLLWLGSDVVGVLVFCAVGRRSHDEGLDIAGLAATAWPFLAGTVVGWLAARAWRRPTAV 61 Query 65 APTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 APTGV+VWLCT+VVGM LRK SSAGVAASFVVVA+ VTA+LLLGWRA L R Sbjct 62 APTGVVVWLCTVVVGMALRKASSAGVAASFVVVAATVTALLLLGWRAVAGLALRRR 117 >gi|317508338|ref|ZP_07966013.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974] gi|316253362|gb|EFV12757.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974] Length=114 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/114 (54%), Positives = 77/114 (68%), Gaps = 0/114 (0%) Query 10 LAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGV 69 +A D + +LVF AVGRRSH E SV G+ ATA PFL G GW + RGWR P A+ PTGV Sbjct 1 MAVDAIFLLVFAAVGRRSHHEHDSVFGVLATALPFLIGAAAGWAVVRGWRAPRAITPTGV 60 Query 70 IVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRADG 123 VWL + +GM+LR ++ VA SF++VASAVTA+ LLGWR V + R+ G Sbjct 61 SVWLGAVWIGMLLRALTGQAVAWSFLLVASAVTALFLLGWRLIVNTLVVVRSRG 114 >gi|148273625|ref|YP_001223186.1| hypothetical protein CMM_2441 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831555|emb|CAN02522.1| conserved membrane protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=131 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/109 (50%), Positives = 74/109 (68%), Gaps = 0/109 (0%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVW 72 D ++VF +GR SH E L+ +G+ TAWPFL G +GW++AR WR P+ + PTG++VW Sbjct 21 DAALIVVFVLIGRASHGEDLAPSGVLGTAWPFLAGGLVGWIVARAWRSPSRVVPTGLLVW 80 Query 73 LCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 T+VVGMVLR +S GV FV+ + + AVL+LGWRA AL+ RA Sbjct 81 GVTLVVGMVLRALSGEGVLVPFVITTAIILAVLMLGWRAISALVVRRRA 129 >gi|312141457|ref|YP_004008793.1| integral membrane protein [Rhodococcus equi 103S] gi|311890796|emb|CBH50115.1| putative integral membrane protein [Rhodococcus equi 103S] Length=125 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/112 (50%), Positives = 73/112 (66%), Gaps = 4/112 (3%) Query 4 RRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTA 63 ++ L DV+ VL+F A+GRRSH E ++ GL TAWPFLTG GW++ G R Sbjct 2 KKYLPAAVVDVLLVLIFAALGRRSHEESSTIGGLLTTAWPFLTGLAAGWIVTLGLYRDKF 61 Query 64 LA----PTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRA 111 + PTGVIVWL T+VVGM+LR VS G A SF+VVA++ + L+GWRA Sbjct 62 DSRLAVPTGVIVWLSTLVVGMLLRVVSDQGTAFSFIVVAASFLGLFLIGWRA 113 >gi|325677154|ref|ZP_08156821.1| transmembrane protein [Rhodococcus equi ATCC 33707] gi|325552027|gb|EGD21722.1| transmembrane protein [Rhodococcus equi ATCC 33707] Length=125 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/112 (50%), Positives = 73/112 (66%), Gaps = 4/112 (3%) Query 4 RRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTA 63 ++ L DV+ VL+F A+GRRSH E ++ GL TAWPFLTG GW++ G R Sbjct 2 KKYLPAAVVDVLLVLIFAALGRRSHEEASTIGGLLTTAWPFLTGLAAGWIVTLGLYRDKF 61 Query 64 LA----PTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRA 111 + PTGVIVWL T+VVGM+LR VS G A SF+VVA++ + L+GWRA Sbjct 62 DSRLAVPTGVIVWLSTLVVGMLLRVVSDQGTAFSFIVVAASFLGLFLIGWRA 113 >gi|269127926|ref|YP_003301296.1| hypothetical protein Tcur_3725 [Thermomonospora curvata DSM 43183] gi|268312884|gb|ACY99258.1| hypothetical protein Tcur_3725 [Thermomonospora curvata DSM 43183] Length=127 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 58/111 (53%), Positives = 68/111 (62%), Gaps = 0/111 (0%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVW 72 DVV V+ F A+GR SH E V LA TAWPFL +GW + R WRRP AP G+ VW Sbjct 10 DVVGVVAFVAIGRASHGESGGVAELAGTAWPFLAALAVGWAVLRAWRRPAEPAPIGLGVW 69 Query 73 LCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRADG 123 T+ GMVLR +S GVA SFV+VA A+ L+GWRA V L H A G Sbjct 70 GITLAGGMVLRALSGGGVAVSFVIVAGIFLALALIGWRAVVQLAERHGAAG 120 >gi|226304559|ref|YP_002764517.1| hypothetical protein RER_10700 [Rhodococcus erythropolis PR4] gi|226183674|dbj|BAH31778.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=127 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/126 (44%), Positives = 74/126 (59%), Gaps = 4/126 (3%) Query 1 MRPRRALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWV----LAR 56 M ++ L D + V++FCA+GRR+H E ++ GLA T+WPFLTG IGW L R Sbjct 1 MSVKKYAPFLLIDAILVIIFCAIGRRTHEEANALAGLAKTSWPFLTGLVIGWAATFALYR 60 Query 57 GWRRPTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALM 116 L PTG++VWL +V+GM+LR +S G SF+VVA+ V LLGWRA L+ Sbjct 61 DKFNAVLLLPTGIVVWLGAVVIGMILRVLSGQGTQFSFIVVATLVLGAFLLGWRALAPLV 120 Query 117 APHRAD 122 R Sbjct 121 VKIRTK 126 >gi|229494393|ref|ZP_04388156.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318755|gb|EEN84613.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=125 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/117 (48%), Positives = 71/117 (61%), Gaps = 4/117 (3%) Query 10 LAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWV----LARGWRRPTALA 65 L D + V++FCA+GRR+H E ++ GLA T+WPFLTG IGW L R L Sbjct 8 LLIDAILVIIFCAIGRRTHEEANALAGLAKTSWPFLTGLVIGWAATFALYRDKFNAVLLV 67 Query 66 PTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRAD 122 PTGV+VWL +V+GM+LR +S G SF+VVA+ V LLGWRA L+ R Sbjct 68 PTGVVVWLGAVVIGMILRVLSGQGTQFSFIVVATLVLGAFLLGWRALAPLVVKIRTK 124 >gi|258653095|ref|YP_003202251.1| hypothetical protein Namu_2924 [Nakamurella multipartita DSM 44233] gi|258556320|gb|ACV79262.1| CGLD9; hypothetical protein [Nakamurella multipartita DSM 44233] Length=118 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/112 (55%), Positives = 73/112 (66%), Gaps = 5/112 (4%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLA----RGWRRPTALAPTG 68 DVV VL F A+GR SH E + + GLA TAWPFL G +GWV A RG PT L P G Sbjct 6 DVVLVLTFAAIGRGSHGESV-LGGLAGTAWPFLLGLLVGWVGAGLGARGAFAPTRLVPAG 64 Query 69 VIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 V++W+ T+VVGM+ R VS G A SF++VA V AV LLGWRAA+ A R Sbjct 65 VLIWIGTLVVGMLARVVSGQGTAISFIIVAGIVLAVFLLGWRAALTAWARRR 116 >gi|163840318|ref|YP_001624723.1| putative integral membrane protein [Renibacterium salmoninarum ATCC 33209] gi|162953794|gb|ABY23309.1| putative integral membrane protein [Renibacterium salmoninarum ATCC 33209] Length=137 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/115 (43%), Positives = 71/115 (62%), Gaps = 0/115 (0%) Query 7 LAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAP 66 L AD+V +++F A+GR SH E + + +TAWPFL G + W++ R WR P L P Sbjct 17 LYAFVADLVLIVIFAAIGRASHQEESPIVNVLSTAWPFLVGAALSWIVGRVWRAPLRLWP 76 Query 67 TGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 GV +WL T++ G++LR VS SF+VVA+ V AV LLG R V ++A ++ Sbjct 77 HGVCLWLITLIAGILLRLVSGRTAEFSFIVVAAIVLAVFLLGHRVIVTVIANRKS 131 >gi|184200923|ref|YP_001855130.1| hypothetical protein KRH_12770 [Kocuria rhizophila DC2201] gi|183581153|dbj|BAG29624.1| hypothetical protein [Kocuria rhizophila DC2201] Length=125 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/101 (53%), Positives = 66/101 (66%), Gaps = 2/101 (1%) Query 10 LAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGV 69 LA D+V V+VF A+GR SH EG V G TAWPFL G +GW+ RG R P A+ PTG+ Sbjct 15 LAVDIVLVIVFAALGRSSHGEG--VAGALMTAWPFLVGALVGWLACRGTRHPAAVIPTGL 72 Query 70 IVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWR 110 VWLC V GMVLR ++ G A FV+V+ V LL+G+R Sbjct 73 SVWLCAEVGGMVLRTLTGQGTALPFVLVSLVVLGALLIGYR 113 >gi|119964114|ref|YP_947945.1| hypothetical protein AAur_2204 [Arthrobacter aurescens TC1] gi|119950973|gb|ABM09884.1| putative membrane protein [Arthrobacter aurescens TC1] Length=129 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/105 (46%), Positives = 66/105 (63%), Gaps = 0/105 (0%) Query 12 ADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIV 71 AD++ VLVF A+GR +HA G ++G ATAWPFL G I W + R WR P + P+GV + Sbjct 14 ADLLLVLVFAAIGRDAHARGDIISGAFATAWPFLAGAAIAWAVTRAWRSPLGMWPSGVCI 73 Query 72 WLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALM 116 W+ +VVGM+LR + V FV+VA V LLG+R A++ Sbjct 74 WIGAVVVGMLLRAATGQVVVLPFVLVALITLGVFLLGYRLLAAML 118 >gi|343924430|ref|ZP_08763979.1| hypothetical protein GOALK_016_00280 [Gordonia alkanivorans NBRC 16433] gi|343765574|dbj|GAA10905.1| hypothetical protein GOALK_016_00280 [Gordonia alkanivorans NBRC 16433] Length=149 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/116 (40%), Positives = 63/116 (55%), Gaps = 12/116 (10%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGW------------RR 60 D VA+ +F +GR SH EG + T WPFL G GW + + R Sbjct 27 DAVAITIFVVIGRASHEEGYAPAAFLHTLWPFLVGCAAGWSITYVYAHVRSSDFFGHDFR 86 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALM 116 P + P G+++W CT+ V M+LR + S GVA SFV+VA+ A+ LLGWRA A + Sbjct 87 PDRVVPVGIVIWFCTVTVAMILRFILSQGVAVSFVIVATVTLALFLLGWRAVFAYL 142 >gi|323356502|ref|YP_004222898.1| hypothetical protein MTES_0054 [Microbacterium testaceum StLB037] gi|323272873|dbj|BAJ73018.1| hypothetical protein MTES_0054 [Microbacterium testaceum StLB037] Length=131 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/94 (55%), Positives = 63/94 (68%), Gaps = 3/94 (3%) Query 20 FCAVGRRSH---AEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTI 76 F A+GR +H G +GLA TAWPFL +GW++AR WR P A TG+IVW T+ Sbjct 25 FAAIGRATHDGDVLGPLGSGLATTAWPFLVALVLGWLIARAWRAPLAPLRTGLIVWAVTV 84 Query 77 VVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWR 110 VVGMVLR VS GVA +FV+VAS A+ L+GWR Sbjct 85 VVGMVLRAVSGQGVAVAFVIVASITLALFLVGWR 118 >gi|170780506|ref|YP_001708838.1| transmembrane protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155074|emb|CAQ00173.1| probable conserved transmembrane protein [Clavibacter michiganensis subsp. sepedonicus] Length=103 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/99 (50%), Positives = 68/99 (69%), Gaps = 0/99 (0%) Query 23 VGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTIVVGMVL 82 +GR SH E + +G+ TAWPFL G +GW++AR WR P+ +APTG++VW T+VVGMVL Sbjct 3 IGRASHGEDHAPSGVLGTAWPFLAGRLVGWIVARAWRSPSRVAPTGLLVWGVTVVVGMVL 62 Query 83 RKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 R +S GV FV+ + + +LLLGWRA A++ RA Sbjct 63 RALSGEGVVIPFVITTAIILGLLLLGWRAVSAIVVRRRA 101 >gi|319949686|ref|ZP_08023719.1| putative transmembrane protein [Dietzia cinnamea P4] gi|319436648|gb|EFV91735.1| putative transmembrane protein [Dietzia cinnamea P4] Length=119 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/109 (46%), Positives = 69/109 (64%), Gaps = 1/109 (0%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVW 72 D V V+VF GR +H+EGL VT + TAWPFL G +GW++ RR A +GV++W Sbjct 10 DAVLVVVFSTFGRGAHSEGLGVTQVWGTAWPFLVGLAVGWLILLAGRREPASIGSGVLLW 69 Query 73 LCTIVVGMVLRKVSSAGVAA-SFVVVASAVTAVLLLGWRAAVALMAPHR 120 L T+VVGMV+R + V SF++VA VT + L+GWRA A++ R Sbjct 70 LATLVVGMVIRGLGDGRVPHWSFMIVAGVVTGLFLVGWRAVRAMLVRRR 118 >gi|116670753|ref|YP_831686.1| hypothetical protein Arth_2206 [Arthrobacter sp. FB24] gi|116610862|gb|ABK03586.1| conserved hypothetical protein [Arthrobacter sp. FB24] Length=138 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 62/103 (61%), Gaps = 0/103 (0%) Query 12 ADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIV 71 AD V +L F A+GR +H G +TG+ +TAWPFL G I W+ R WR P + P GV V Sbjct 24 ADTVLILAFAAIGRDAHQRGDVITGVLSTAWPFLAGAAIAWLALRVWRGPLRVWPEGVAV 83 Query 72 WLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVA 114 WL + +GMVLR + V FV+VA+ V L+G+R VA Sbjct 84 WLGAVALGMVLRAATGQTVVLPFVIVATLSLGVFLVGYRLIVA 126 >gi|54027470|ref|YP_121712.1| hypothetical protein nfa54960 [Nocardia farcinica IFM 10152] gi|54018978|dbj|BAD60348.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=117 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/102 (51%), Positives = 67/102 (66%), Gaps = 8/102 (7%) Query 20 FCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRR-------PTALAPTGVIVW 72 FCA+GRRSH E + + GLA T WPF G +GW+LA R PTA+ P+ V+VW Sbjct 14 FCAIGRRSHDEAV-LAGLAKTLWPFAVGLALGWLLAVLVSRQPRVPFVPTAVWPSAVLVW 72 Query 73 LCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVA 114 T+V GM+LR V+ G A SFV+VA V A+ L+GWRAAV+ Sbjct 73 AGTLVGGMLLRVVAGQGTAPSFVLVAGTVLALFLIGWRAAVS 114 >gi|309813096|ref|ZP_07706820.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308432900|gb|EFP56808.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length=118 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/101 (48%), Positives = 64/101 (64%), Gaps = 1/101 (0%) Query 22 AVGRRSHAEGLSVTGLAATAWPFLTGTGIGW-VLARGWRRPTALAPTGVIVWLCTIVVGM 80 AVGRR+H E ++TG+ TAWPF+ G +GW VL R P +GVIVWL T++VGM Sbjct 18 AVGRRNHGEADALTGIVTTAWPFVVGAIVGWIVLVVMKRLPGRSLTSGVIVWLTTVIVGM 77 Query 81 VLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 +LR+VS G A +FV+VA A +LGWR ++ RA Sbjct 78 ILRQVSGHGTAVAFVIVALAFNGACMLGWRLVARVLERRRA 118 >gi|262204302|ref|YP_003275510.1| hypothetical protein Gbro_4484 [Gordonia bronchialis DSM 43247] gi|262087649|gb|ACY23617.1| hypothetical protein Gbro_4484 [Gordonia bronchialis DSM 43247] Length=137 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/109 (40%), Positives = 59/109 (55%), Gaps = 12/109 (11%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGW--------VLARGWR----R 60 D V + VF +GR SH E S G+ T WPFL G GW V + W R Sbjct 14 DAVVITVFALIGRASHEEAFSPIGIMQTVWPFLVGCAAGWSITYVYSHVRSSDWFGHDFR 73 Query 61 PTALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGW 109 P + P G+++W CT+ VGMV+R + GV SF++VA++ + LLGW Sbjct 74 PDRMVPVGLVIWFCTVTVGMVVRYILHQGVELSFIIVAASFLGLFLLGW 122 >gi|50955345|ref|YP_062633.1| hypothetical protein Lxx17840 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951827|gb|AAT89528.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length=144 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/99 (44%), Positives = 58/99 (59%), Gaps = 0/99 (0%) Query 24 GRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTIVVGMVLR 83 GRRSH E + G+ T+WPFL G GW++ WRRP A+ G+ VWL T+ +GM++R Sbjct 31 GRRSHGEASGLGGILTTSWPFLVGLLAGWLVTGAWRRPFAIVWPGIPVWLMTVALGMLIR 90 Query 84 KVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRAD 122 + GV SF+ VA VLL+GWR + HRA Sbjct 91 TSAGQGVQPSFIAVAFVALGVLLVGWRLIALPLVRHRAR 129 >gi|336118263|ref|YP_004573032.1| hypothetical protein MLP_26150 [Microlunatus phosphovorus NM-1] gi|334686044|dbj|BAK35629.1| hypothetical protein MLP_26150 [Microlunatus phosphovorus NM-1] Length=150 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/121 (45%), Positives = 69/121 (58%), Gaps = 3/121 (2%) Query 5 RALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARG---WRRP 61 R L L DVVA++ F +GRRSH E ++ G+ TAWPFL G IG + G R Sbjct 27 RYLPALVVDVVAIIAFAILGRRSHDEAGNLLGVLGTAWPFLAGALIGHAVCWGVVALRGD 86 Query 62 TALAPTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHRA 121 A GV+VW T+V+GM+LR S +G A FV+VA V A LLLGWR L+ R Sbjct 87 QAGWRPGVVVWASTLVLGMLLRLASGSGAAWPFVLVAGIVLAALLLGWRGVFRLVQRART 146 Query 122 D 122 + Sbjct 147 N 147 >gi|72160887|ref|YP_288544.1| hypothetical protein Tfu_0483 [Thermobifida fusca YX] gi|71914619|gb|AAZ54521.1| conserved hypothetical protein [Thermobifida fusca YX] Length=124 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/102 (43%), Positives = 58/102 (57%), Gaps = 0/102 (0%) Query 19 VFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTIVV 78 +F +GR SH E ++ + T WPF +GW++AR W+ P A TGV VW T+ Sbjct 16 LFVLIGRSSHGEPNTLIDVVTTLWPFAASLALGWIVARAWQMPVAPLRTGVGVWAITVAA 75 Query 79 GMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 GM LR +S G+A SF+VVAS A L+GWR L+ R Sbjct 76 GMALRALSGGGIAVSFIVVASLFLAAGLIGWRVVATLVLSRR 117 >gi|260903700|ref|ZP_05912022.1| putative transmembrane protein [Brevibacterium linens BL2] Length=135 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/96 (42%), Positives = 58/96 (61%), Gaps = 5/96 (5%) Query 20 FCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTIVVG 79 F +G +H+ GL TAWPFL G G+ W+LA W RP A TG VW TI++G Sbjct 22 FTIIGHYTHSHNFDPQGLLTTAWPFLVGLGVAWLLAAVWDRPIAPLATGTGVWAITILIG 81 Query 80 MVLRKVSSAG-----VAASFVVVASAVTAVLLLGWR 110 +V+R ++ AG V SF++VA+++ + L+GWR Sbjct 82 LVIRGITGAGGEPGQVPVSFMIVATSLNLITLVGWR 117 >gi|297562841|ref|YP_003681815.1| transmembrane protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847289|gb|ADH69309.1| putative transmembrane protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=127 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/104 (42%), Positives = 56/104 (54%), Gaps = 0/104 (0%) Query 17 VLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAPTGVIVWLCTI 76 VL F +GR H G ++ +A TAWPF T +GW + R W P + PTG+ VW T+ Sbjct 20 VLAFVVIGRTDHGTGTALAEIAWTAWPFAAATALGWAVTRAWTAPVRIWPTGLFVWAVTV 79 Query 77 VVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMAPHR 120 V GM +R G SFV+V S A +LGWR L+A R Sbjct 80 VGGMAVRVFLGEGAPTSFVIVTSLFLAATMLGWRGVALLVARRR 123 >gi|296138089|ref|YP_003645332.1| hypothetical protein Tpau_0350 [Tsukamurella paurometabola DSM 20162] gi|296026223|gb|ADG76993.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=146 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/123 (39%), Positives = 67/123 (55%), Gaps = 14/123 (11%) Query 13 DVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLA------RGWR------- 59 D + V++F ++GR +H E LS G+A T+WPFL +GW A RG Sbjct 10 DALLVVLFASIGRFNHGESLSPAGVAETSWPFLLALAVGWAFAYVLSAIRGHEPGRAQTF 69 Query 60 RPTALAPTGVIVWLCTIVVGMVLRK-VSSAGVAASFVVVASAVTAVLLLGWRAAVALMAP 118 P + P GVI+W+ T+ VGM R ++ GV SFV+V + V + LLGWRA ++ Sbjct 70 SPGRIFPEGVIIWVSTVAVGMTARGLLTEDGVQVSFVIVTAIVLGIFLLGWRAIAQVVLA 129 Query 119 HRA 121 RA Sbjct 130 RRA 132 >gi|295395906|ref|ZP_06806091.1| transcriptional regulator/sugar kinase [Brevibacterium mcbrellneri ATCC 49030] gi|294971179|gb|EFG47069.1| transcriptional regulator/sugar kinase [Brevibacterium mcbrellneri ATCC 49030] Length=127 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/111 (39%), Positives = 61/111 (55%), Gaps = 0/111 (0%) Query 7 LAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTALAP 66 L L D V V +F VG +HA+ L +G+ TAWPF+ I W+ W P A Sbjct 12 LITLVTDAVLVCLFAVVGYYTHAQNLEFSGIVRTAWPFMAALAIAWLANAVWTAPLAPLR 71 Query 67 TGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVALMA 117 TGV +W T++VGM++R + G A F++VAS V L+GWR + +A Sbjct 72 TGVGIWATTVLVGMIIRIILGEGTAGPFILVASGVNLFTLVGWRVLASQLA 122 >gi|256371591|ref|YP_003109415.1| hypothetical protein Afer_0794 [Acidimicrobium ferrooxidans DSM 10331] gi|256008175|gb|ACU53742.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM 10331] Length=123 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/111 (42%), Positives = 66/111 (60%), Gaps = 2/111 (1%) Query 5 RALAGLAADVVAVLVFCAVGRRSHAEGLSVTGLAATAWPFLTGTGIGWVLARGWRRPTAL 64 R + +A D+VA L+F +GR +H + G+ T WPFL GT +G++L R RR + Sbjct 2 RWRSWIAWDIVATLIFVVIGRHAHGHSEQLIGVWRTWWPFLVGTLVGFLLVR--RRTGQV 59 Query 65 APTGVIVWLCTIVVGMVLRKVSSAGVAASFVVVASAVTAVLLLGWRAAVAL 115 P G++VW T+ +GMVLR +S GV FV VA + + L+G R A AL Sbjct 60 WPGGIVVWASTVTLGMVLRLLSHQGVVWLFVAVAGSFLGLFLVGPRLAWAL 110 Lambda K H 0.327 0.136 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131390282924 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40