BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0403c Length=142 Score E Sequences producing significant alignments: (Bits) Value gi|15607544|ref|NP_214917.1| membrane protein [Mycobacterium tub... 288 3e-76 gi|340625429|ref|YP_004743881.1| hypothetical protein MCAN_04011... 282 1e-74 gi|298523879|ref|ZP_07011288.1| conserved hypothetical protein [... 275 2e-72 gi|15839788|ref|NP_334825.1| hypothetical protein MT0415 [Mycoba... 245 2e-63 gi|254230757|ref|ZP_04924084.1| membrane protein mmpS1 [Mycobact... 244 4e-63 gi|254549345|ref|ZP_05139792.1| hypothetical protein Mtube_02608... 230 5e-59 gi|289568317|ref|ZP_06448544.1| membrane protein mmpS1 [Mycobact... 195 2e-48 gi|183980728|ref|YP_001849019.1| membrane protein MmpS1_1 [Mycob... 194 5e-48 gi|183981736|ref|YP_001850027.1| membrane protein MmpS1 [Mycobac... 191 2e-47 gi|118617551|ref|YP_905883.1| membrane protein MmpS1 [Mycobacter... 183 7e-45 gi|254818587|ref|ZP_05223588.1| membrane protein MmpS1 [Mycobact... 153 9e-36 gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycoba... 151 2e-35 gi|183983723|ref|YP_001852014.1| membrane protein MmpS5_1 [Mycob... 150 5e-35 gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 ... 150 6e-35 gi|118618954|ref|YP_907286.1| membrane protein MmpS5_1 [Mycobact... 149 1e-34 gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bov... 148 3e-34 gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_401... 148 3e-34 gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 ... 147 4e-34 gi|183981710|ref|YP_001850001.1| hypothetical protein MMAR_1696 ... 142 2e-32 gi|118465434|ref|YP_883027.1| MmpS4 protein [Mycobacterium avium... 140 6e-32 gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_1100... 139 1e-31 gi|296165037|ref|ZP_06847592.1| MmpS family membrane protein [My... 139 1e-31 gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegm... 139 1e-31 gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976... 139 1e-31 gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_2236... 139 2e-31 gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegm... 138 3e-31 gi|183980130|ref|YP_001848421.1| membrane protein MmpS5_3 [Mycob... 137 4e-31 gi|240171020|ref|ZP_04749679.1| hypothetical protein MkanA1_1704... 137 6e-31 gi|118617529|ref|YP_905861.1| hypothetical protein MUL_1935 [Myc... 137 6e-31 gi|342858162|ref|ZP_08714817.1| hypothetical protein MCOL_04791 ... 135 2e-30 gi|254776285|ref|ZP_05217801.1| MmpS4 protein [Mycobacterium avi... 135 3e-30 gi|118472449|ref|YP_884986.1| MmpS1 protein [Mycobacterium smegm... 134 3e-30 gi|41409848|ref|NP_962684.1| MmpS1 [Mycobacterium avium subsp. p... 134 4e-30 gi|336460143|gb|EGO39048.1| Mycobacterium membrane protein [Myco... 133 7e-30 gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacter... 133 9e-30 gi|333990133|ref|YP_004522747.1| hypothetical protein JDM601_149... 132 2e-29 gi|296170516|ref|ZP_06852102.1| MmpS family membrane protein [My... 132 2e-29 gi|342859455|ref|ZP_08716109.1| membrane transporter [Mycobacter... 131 3e-29 gi|118464951|ref|YP_880981.1| Mmps1 protein [Mycobacterium avium... 130 5e-29 gi|240172456|ref|ZP_04751115.1| membrane transporter [Mycobacter... 130 5e-29 gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegm... 130 7e-29 gi|15828277|ref|NP_302540.1| small membrane protein [Mycobacteri... 129 1e-28 gi|317509015|ref|ZP_07966646.1| membrane protein [Segniliparus r... 129 2e-28 gi|240169833|ref|ZP_04748492.1| membrane protein MmpS4_2 [Mycoba... 129 2e-28 gi|5524339|gb|AAD44232.1|AF143772_38 TmtpA [Mycobacterium avium] 128 3e-28 gi|296167298|ref|ZP_06849700.1| MmpS family membrane protein [My... 128 3e-28 gi|41408336|ref|NP_961172.1| hypothetical protein MAP2238 [Mycob... 128 3e-28 gi|342858823|ref|ZP_08715478.1| MmpS4 protein [Mycobacterium col... 128 3e-28 gi|342857819|ref|ZP_08714475.1| hypothetical protein MCOL_03055 ... 128 4e-28 gi|336458226|gb|EGO37207.1| Mycobacterium membrane protein [Myco... 127 4e-28 >gi|15607544|ref|NP_214917.1| membrane protein [Mycobacterium tuberculosis H37Rv] gi|31791580|ref|NP_854073.1| membrane protein [Mycobacterium bovis AF2122/97] gi|121636316|ref|YP_976539.1| putative membrane protein mmpS1 [Mycobacterium bovis BCG str. Pasteur 1173P2] 66 more sequence titles Length=142 Score = 288 bits (736), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF Sbjct 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE Sbjct 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 Query 121 VIREERIVNAYHAHTSCLVKSA 142 VIREERIVNAYHAHTSCLVKSA Sbjct 121 VIREERIVNAYHAHTSCLVKSA 142 >gi|340625429|ref|YP_004743881.1| hypothetical protein MCAN_04011 [Mycobacterium canettii CIPT 140010059] gi|340003619|emb|CCC42741.1| putative conserved membrane protein MMPS1 [Mycobacterium canettii CIPT 140010059] Length=142 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 140/142 (99%), Positives = 140/142 (99%), Gaps = 0/142 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 MFGVAKR WIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAF PKHVLYEVF Sbjct 1 MFGVAKRLWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFNPKHVLYEVF 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE Sbjct 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 Query 121 VIREERIVNAYHAHTSCLVKSA 142 VIREERIVNAYHAHTSCLVKSA Sbjct 121 VIREERIVNAYHAHTSCLVKSA 142 >gi|298523879|ref|ZP_07011288.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298493673|gb|EFI28967.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=140 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF Sbjct 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE Sbjct 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 Query 121 VIREERIVNAYHAHTS 136 VIREERIVNAYHAHTS Sbjct 121 VIREERIVNAYHAHTS 136 >gi|15839788|ref|NP_334825.1| hypothetical protein MT0415 [Mycobacterium tuberculosis CDC1551] gi|254363367|ref|ZP_04979413.1| hypothetical protein TBHG_00399 [Mycobacterium tuberculosis str. Haarlem] gi|13879918|gb|AAK44639.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|134148881|gb|EBA40926.1| hypothetical protein TBHG_00399 [Mycobacterium tuberculosis str. Haarlem] gi|323721074|gb|EGB30136.1| membrane protein mmpS1 [Mycobacterium tuberculosis CDC1551A] Length=151 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/123 (99%), Positives = 122/123 (99%), Gaps = 0/123 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF Sbjct 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE Sbjct 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 Query 121 VIR 123 V R Sbjct 121 VNR 123 >gi|254230757|ref|ZP_04924084.1| membrane protein mmpS1 [Mycobacterium tuberculosis C] gi|124599816|gb|EAY58826.1| membrane protein mmpS1 [Mycobacterium tuberculosis C] Length=211 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 125/141 (89%), Positives = 126/141 (90%), Gaps = 2/141 (1%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF Sbjct 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVN- 119 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVN Sbjct 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVND 120 Query 120 -EVIREERIVNAYHAHTSCLV 139 E R R + SC V Sbjct 121 GEPPRHVRRLQFLERMGSCQV 141 >gi|254549345|ref|ZP_05139792.1| hypothetical protein Mtube_02608 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=112 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/112 (99%), Positives = 112/112 (100%), Gaps = 0/112 (0%) Query 31 VFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHEVVNAAVPWSF 90 +FGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHEVVNAAVPWSF Sbjct 1 MFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHEVVNAAVPWSF 60 Query 91 TIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA 142 TIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA Sbjct 61 TIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA 112 >gi|289568317|ref|ZP_06448544.1| membrane protein mmpS1 [Mycobacterium tuberculosis T17] gi|289542070|gb|EFD45719.1| membrane protein mmpS1 [Mycobacterium tuberculosis T17] Length=95 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/95 (100%), Positives = 95/95 (100%), Gaps = 0/95 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF Sbjct 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTT 95 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTT Sbjct 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTT 95 >gi|183980728|ref|YP_001849019.1| membrane protein MmpS1_1 [Mycobacterium marinum M] gi|183174054|gb|ACC39164.1| conserved membrane protein MmpS1_1 [Mycobacterium marinum M] Length=142 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/142 (68%), Positives = 114/142 (81%), Gaps = 0/142 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 M GV +R WIP V++IVVAV A V RLH FGS ++ P + N D I+AF PK VLYEV Sbjct 1 MIGVIRRIWIPTVMIIVVAVGAAVVVRLHGAFGSPRNRPGSSNADSIVAFNPKRVLYEVT 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GPPG++A+INYLDA+AQPHEV NAA+PWS T+VTTL+AV+ANVVAR D SLGCRITVN Sbjct 61 GPPGSLATINYLDAEAQPHEVTNAAIPWSLTVVTTLSAVIANVVARSDSTSLGCRITVNG 120 Query 121 VIREERIVNAYHAHTSCLVKSA 142 V+R ER V +Y+AHTSCLVKSA Sbjct 121 VVRAEREVESYNAHTSCLVKSA 142 >gi|183981736|ref|YP_001850027.1| membrane protein MmpS1 [Mycobacterium marinum M] gi|183175062|gb|ACC40172.1| conserved membrane protein MmpS1 [Mycobacterium marinum M] Length=142 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/142 (63%), Positives = 113/142 (80%), Gaps = 0/142 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 M + +R W+P+V+++V V A V RLH VFGSH++ PD GN D I+AF PK+V YEVF Sbjct 1 MVSLFRRMWVPIVMILVAIVGASVVMRLHGVFGSHRYVPDAGNSDAIVAFNPKYVRYEVF 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GPPGTV ++NYLDA A+PHEV NAA+PWS TIVTTLT+VVA++VA+G+ A+L CRITVN Sbjct 61 GPPGTVVTVNYLDAQAEPHEVANAAIPWSLTIVTTLTSVVAHLVAQGNSATLSCRITVNG 120 Query 121 VIREERIVNAYHAHTSCLVKSA 142 V+R ER +A+ A TSCLVKSA Sbjct 121 VVRAERTADAHDAATSCLVKSA 142 >gi|118617551|ref|YP_905883.1| membrane protein MmpS1 [Mycobacterium ulcerans Agy99] gi|118569661|gb|ABL04412.1| conserved membrane protein MmpS1 [Mycobacterium ulcerans Agy99] Length=135 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 87/135 (65%), Positives = 108/135 (80%), Gaps = 0/135 (0%) Query 8 FWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVA 67 W+P+V+V+V V A V RLH VFGSH++ PD GN D I+AF PK+V YEVFGPPGTV Sbjct 1 MWVPIVMVLVAIVGASVVMRLHGVFGSHRYVPDAGNSDAIVAFNPKYVRYEVFGPPGTVV 60 Query 68 SINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERI 127 ++NYLDA A+PHEV NAA+PWS TIVTTLT+VVA++VA+G+ A+L CRITVN V+R ER Sbjct 61 TVNYLDAQAEPHEVANAAIPWSLTIVTTLTSVVAHLVAQGNSATLSCRITVNGVVRAERT 120 Query 128 VNAYHAHTSCLVKSA 142 +A+ A TSC VKSA Sbjct 121 ADAHDAATSCPVKSA 135 >gi|254818587|ref|ZP_05223588.1| membrane protein MmpS1 [Mycobacterium intracellulare ATCC 13950] Length=142 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 71/138 (52%), Positives = 99/138 (72%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGN-LDPIIAFYPKHVLYEVFGPPG 64 KR W+P+V+V+V+A+A+ V RLH VFG + N +D ++ F PKHVLY+V+GP G Sbjct 5 KRAWVPLVMVLVIAIASFAVVRLHGVFGRQSVSAGGANGVDTLVQFNPKHVLYDVWGPAG 64 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 TV ++YLD AQP V A VPWS+ IVTT TAV+A VVA+G+ S+GCRITVN +R+ Sbjct 65 TVVQVDYLDEHAQPQRVATATVPWSYEIVTTDTAVIATVVAQGEADSIGCRITVNGEVRD 124 Query 125 ERIVNAYHAHTSCLVKSA 142 +R+ + + A T C++KSA Sbjct 125 QRVFDGHRAQTHCIMKSA 142 >gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycobacterium kansasii ATCC 12478] Length=139 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/139 (52%), Positives = 98/139 (71%), Gaps = 0/139 (0%) Query 4 VAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPP 63 + + WIP+V+VIV+AV+ + V RLH +FGS + G I+ F PK V YEVFGPP Sbjct 1 MTRHLWIPLVLVIVLAVSGLVVMRLHRIFGSQDLNANAGGGIEIVQFNPKVVTYEVFGPP 60 Query 64 GTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIR 123 G+ A+INY DADA H+V A +PWS TI TTL +V AN++A+GDG+ +GCRITV+ V+R Sbjct 61 GSTANINYWDADANTHQVNAAPLPWSVTISTTLPSVSANIMAQGDGSRIGCRITVDGVVR 120 Query 124 EERIVNAYHAHTSCLVKSA 142 +E+ + + T CLVKSA Sbjct 121 QEKKSDGVNPQTFCLVKSA 139 >gi|183983723|ref|YP_001852014.1| membrane protein MmpS5_1 [Mycobacterium marinum M] gi|183177049|gb|ACC42159.1| conserved membrane protein MmpS5_1 [Mycobacterium marinum M] Length=147 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/139 (52%), Positives = 99/139 (72%), Gaps = 0/139 (0%) Query 4 VAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPP 63 V KR WIP+++V+V+A++ + VSRLH +FGS + G I+ F PK V+YE+ GP Sbjct 9 VLKRAWIPLLMVVVLAISGLVVSRLHKIFGSEDLNANAGAGIDIVQFNPKVVIYEISGPA 68 Query 64 GTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIR 123 G+ A+IN+ DADA H+V A +PWSFTI TTL +V AN++A+GDG+ +GCRITV+ V+R Sbjct 69 GSTANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRITVDGVVR 128 Query 124 EERIVNAYHAHTSCLVKSA 142 EE+ + T CLVKSA Sbjct 129 EEKSAAGVNPQTFCLVKSA 147 >gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 [Mycobacterium marinum M] gi|183174124|gb|ACC39234.1| conserved membrane protein [Mycobacterium marinum M] Length=148 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 76/138 (56%), Positives = 94/138 (69%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDT-GNLDPIIAFYPKHVLYEVFGPPG 64 KR WI +VI+ VV +AA +V+RL S FG H P T G D I F PKHV+YEVFGPPG Sbjct 11 KRTWIALVILAVVVIAAFSVNRLRSYFGVHDDRPLTSGVSDDIKPFNPKHVVYEVFGPPG 70 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 TVA+INYLD +AQP V +PW+ + TTL +V NVVA+GD +GCRI VN +++ Sbjct 71 TVANINYLDIEAQPQRVSGVTLPWTLAVTTTLPSVSVNVVAQGDTDQIGCRIIVNGEVKD 130 Query 125 ERIVNAYHAHTSCLVKSA 142 ER N +A T CLVKSA Sbjct 131 ERSENEVNAQTFCLVKSA 148 >gi|118618954|ref|YP_907286.1| membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99] gi|118571064|gb|ABL05815.1| conserved membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99] Length=139 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/137 (52%), Positives = 97/137 (71%), Gaps = 0/137 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGT 65 KR WIP+++V+V+A++ VSRLH +FGS + G I+ F PK V+YE+ GP G+ Sbjct 3 KRAWIPLLMVVVLAISGFVVSRLHKIFGSEDLNANAGAGIDIVQFNPKVVIYEISGPAGS 62 Query 66 VASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREE 125 A+IN+ DADA H+V A +PWSFTI TTL +V AN++A+GDG+ +GCRITV+ V+REE Sbjct 63 TANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRITVDGVVREE 122 Query 126 RIVNAYHAHTSCLVKSA 142 + + T CLVKSA Sbjct 123 KSAAGVNPQTFCLVKSA 139 >gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bovis AF2122/97] gi|121637477|ref|YP_977700.1| putative membrane protein mmpS6 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989952|ref|YP_002644639.1| hypothetical protein JTY_1583 [Mycobacterium bovis BCG str. Tokyo 172] 17 more sequence titles Length=148 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/141 (57%), Positives = 100/141 (71%), Gaps = 1/141 (0%) Query 3 GVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEVFG 61 G+ KR W+ +V V VVAVA +V RLH +FGSH G + + I F PK V EVFG Sbjct 8 GLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQVTLEVFG 67 Query 62 PPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEV 121 PGTVA+INYLD DA P +V++ +PWS+TI TTL AV ANVVA+GD S+GCRITVN V Sbjct 68 APGTVATINYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGCRITVNGV 127 Query 122 IREERIVNAYHAHTSCLVKSA 142 +++ERIVN A+T CL KS+ Sbjct 128 VKDERIVNEVRAYTFCLDKSS 148 >gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_4018 [Mycobacterium sp. JDM601] gi|333488626|gb|AEF38018.1| membrane protein MmpS4_2 [Mycobacterium sp. JDM601] Length=148 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 69/143 (49%), Positives = 98/143 (69%), Gaps = 1/143 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP-DTGNLDPIIAFYPKHVLYEV 59 +F V R WIP+VI+ VV VA TV+R+H +FGS + G +D F PK + YE+ Sbjct 6 IFKVLSRVWIPLVILAVVGVAGFTVTRIHGLFGSEKRPSYADGQIDETKPFNPKRMTYEI 65 Query 60 FGPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVN 119 FGPPGTVA I+Y D +++P V + A+PW IVTTL AVV +++A+G+ S+GCRITV+ Sbjct 66 FGPPGTVADISYFDVNSEPQRVQDVALPWQLEIVTTLPAVVGSIMAQGNSNSIGCRITVD 125 Query 120 EVIREERIVNAYHAHTSCLVKSA 142 ++ ERI N +A+T CL+K+A Sbjct 126 GEVKAERISNEVNAYTFCLLKAA 148 >gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 [Mycobacterium africanum GM041182] gi|339330983|emb|CCC26655.1| unnamed protein product [Mycobacterium africanum GM041182] Length=148 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 79/141 (57%), Positives = 100/141 (71%), Gaps = 1/141 (0%) Query 3 GVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEVFG 61 G+ KR W+ +V V VVAVA +V RLH +FGSH G + + I F PK V EVFG Sbjct 8 GLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQVTLEVFG 67 Query 62 PPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEV 121 PGTVA++NYLD DA P +V++ +PWS+TI TTL AV ANVVA+GD S+GCRITVN V Sbjct 68 APGTVATVNYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGCRITVNGV 127 Query 122 IREERIVNAYHAHTSCLVKSA 142 +++ERIVN A+T CL KS+ Sbjct 128 VKDERIVNEVRAYTFCLDKSS 148 >gi|183981710|ref|YP_001850001.1| hypothetical protein MMAR_1696 [Mycobacterium marinum M] gi|183175036|gb|ACC40146.1| conserved membrane protein [Mycobacterium marinum M] Length=143 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/143 (52%), Positives = 100/143 (70%), Gaps = 1/143 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEV 59 M + +R W+ +V V VV +A + RLH +FGSH +A + + I+ F PK V+ +V Sbjct 1 MEALVRRGWMMIVAVAVVVIAGFAIYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDV 60 Query 60 FGPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVN 119 FG PG VA+INYLD +AQP +VV+A +PWSFTI TT AV+ NVVA+G+G ++GCRITVN Sbjct 61 FGAPGAVATINYLDVNAQPQQVVDAPLPWSFTITTTEPAVLGNVVAQGNGGTIGCRITVN 120 Query 120 EVIREERIVNAYHAHTSCLVKSA 142 +++ERIVN A+T CL KS Sbjct 121 GEVKDERIVNTPDAYTFCLDKSG 143 >gi|118465434|ref|YP_883027.1| MmpS4 protein [Mycobacterium avium 104] gi|118166721|gb|ABK67618.1| MmpS4 protein [Mycobacterium avium 104] Length=148 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 73/138 (53%), Positives = 98/138 (72%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEVFGPPG 64 KR W+ +V+V+VV VA V RLH +FGSH + G + D F PKH+ EVFG PG Sbjct 11 KRGWMVLVVVVVVGVAGFCVYRLHGIFGSHNNTSAAGGISDQTEPFSPKHITLEVFGNPG 70 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 VA+INY+D + QP +V+NAA+PWS T+VTT +N+VA+G+ SLGCRITV+ +++ Sbjct 71 AVATINYVDINVQPRQVLNAALPWSLTMVTTQPGAFSNLVAQGNSDSLGCRITVDGDVKD 130 Query 125 ERIVNAYHAHTSCLVKSA 142 ERIVN +A+T CLVKSA Sbjct 131 ERIVNQVNAYTFCLVKSA 148 >gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_11007 [Mycobacterium kansasii ATCC 12478] Length=148 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/138 (55%), Positives = 94/138 (69%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEVFGPPG 64 KR WIP+VIV VVAVA +V RL FG P T + D I F PKHV+YEVFGPPG Sbjct 11 KRVWIPLVIVAVVAVAGFSVYRLRGFFGYTDKGPITSGIADDIKPFNPKHVVYEVFGPPG 70 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 T+A+INYLD +AQP V N +PW+ ++ TTL +V NVVA+G+ +GCRI VN +++ Sbjct 71 TIANINYLDINAQPQRVSNVPLPWTLSVTTTLPSVSVNVVAQGNSDQIGCRIIVNGEVKD 130 Query 125 ERIVNAYHAHTSCLVKSA 142 ER N +A T CLVKSA Sbjct 131 ERSENQVNAQTFCLVKSA 148 >gi|296165037|ref|ZP_06847592.1| MmpS family membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899685|gb|EFG79136.1| MmpS family membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=142 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/146 (48%), Positives = 98/146 (68%), Gaps = 8/146 (5%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGN----LDPIIAFYPKHVL 56 M G+ KR W+P+ + +V+ A ++VS L +FGSHQ + G+ ++P+I K V Sbjct 1 MVGLLKRAWVPLAVALVLGFAGLSVSHLRGMFGSHQKS-SAGDVAAVIEPVIH---KQVT 56 Query 57 YEVFGPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRI 116 YE++G P T+ASINYLDA A P +V ++PWS+TI T L AV ANVVA+GDG +GCRI Sbjct 57 YEIYGSPTTLASINYLDAGAAPRDVEVRSLPWSYTITTRLPAVFANVVAQGDGDRIGCRI 116 Query 117 TVNEVIREERIVNAYHAHTSCLVKSA 142 VN +R+++ N HA SCLVK+A Sbjct 117 IVNGEVRDQQSTNGKHALASCLVKAA 142 >gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155] gi|118172001|gb|ABK72897.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155] Length=158 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/140 (48%), Positives = 93/140 (67%), Gaps = 1/140 (0%) Query 4 VAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQH-APDTGNLDPIIAFYPKHVLYEVFGP 62 +A+RFWIP++I VV V A TV R+ + FGS + + +D F PK V+YE++G Sbjct 19 LARRFWIPLLIGAVVFVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVVVYEIYGE 78 Query 63 PGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVI 122 PG A INYLD DAQP V A +PWS T+ TT +V N+VA+G+G ++ CRITV++ + Sbjct 79 PGATADINYLDLDAQPQRVDGATLPWSLTLSTTAPSVFPNIVAQGNGDTITCRITVDDEL 138 Query 123 REERIVNAYHAHTSCLVKSA 142 ++ER N +A T CLVKSA Sbjct 139 KDERTSNGVNAQTFCLVKSA 158 >gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976 [Mycobacterium intracellulare ATCC 13950] Length=134 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/132 (53%), Positives = 94/132 (72%), Gaps = 1/132 (0%) Query 12 MVIVIVVAVAAVTVSRLHSVFGSHQHA-PDTGNLDPIIAFYPKHVLYEVFGPPGTVASIN 70 +V V+VVA+A + RLH +FGSH + ++G I+ F PK V+ EVFG PG VA+IN Sbjct 3 IVSVLVVALAGFGIYRLHGIFGSHDNTTANSGLAAEIVPFNPKQVVLEVFGAPGAVATIN 62 Query 71 YLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNA 130 YLD +AQP +V +A +PWSFTI TT AV+ NVVA+G+G +LGCRITVN ++++R V+ Sbjct 63 YLDVNAQPQQVKDAPLPWSFTITTTEPAVIGNVVAQGNGDTLGCRITVNGEVKDQRTVHK 122 Query 131 YHAHTSCLVKSA 142 A+T CL KS Sbjct 123 VDAYTFCLDKSG 134 >gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_22360 [Mycobacterium kansasii ATCC 12478] Length=149 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/138 (49%), Positives = 90/138 (66%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQ-HAPDTGNLDPIIAFYPKHVLYEVFGPPG 64 KR WIP+V+ + VA + TV RLH +FG+ A G+ D I+ F PK V YEV GPPG Sbjct 12 KRLWIPLVVSLTVATSGFTVYRLHGIFGAAGFSAISNGHADEIVPFNPKQVRYEVVGPPG 71 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 T SI+YLD +A P + +PW+ T TT+ AV AN+VA+GD ++GCRI+VN I+E Sbjct 72 TTGSISYLDENAAPQQARFTMLPWTHTFTTTIPAVFANLVAQGDSNAIGCRISVNGEIKE 131 Query 125 ERIVNAYHAHTSCLVKSA 142 ++ +A T CLVKSA Sbjct 132 QQYATEVNAQTFCLVKSA 149 >gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155] gi|118172400|gb|ABK73296.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155] Length=142 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/138 (48%), Positives = 92/138 (67%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQH-APDTGNLDPIIAFYPKHVLYEVFGPPG 64 KRFWIP++I +VV V A TV R+ + FGS + + +D F PK V+YE++G PG Sbjct 5 KRFWIPLLIGVVVLVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVVIYEIYGEPG 64 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 A +NYLD DAQP V ++PW+ T+ TT +V N+VA+G+G S+ CRITV++ +++ Sbjct 65 ATADVNYLDLDAQPQRVDGVSLPWTLTLSTTAPSVFPNIVAQGNGDSITCRITVDDELKD 124 Query 125 ERIVNAYHAHTSCLVKSA 142 ER N +A T CLVKSA Sbjct 125 ERTSNGVNAQTFCLVKSA 142 >gi|183980130|ref|YP_001848421.1| membrane protein MmpS5_3 [Mycobacterium marinum M] gi|183173456|gb|ACC38566.1| conserved membrane protein MmpS5_3 [Mycobacterium marinum M] Length=145 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 68/137 (50%), Positives = 89/137 (65%), Gaps = 1/137 (0%) Query 7 RFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDT-GNLDPIIAFYPKHVLYEVFGPPGT 65 + WIP+VIV VV V A +VSR+H FGS + T G+ D F PK + YE+FGP GT Sbjct 9 KLWIPLVIVTVVGVTAFSVSRVHGFFGSQKPELYTDGSSDDATPFNPKQLTYEIFGPAGT 68 Query 66 VASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREE 125 VA I+Y D +AQP V A +PWS I +T ++ N+VA+GD LGCRI V+ VI+ E Sbjct 69 VADIDYFDVNAQPRRVDGAHLPWSLEIKSTSASLTGNIVAQGDSNRLGCRIIVDGVIKAE 128 Query 126 RIVNAYHAHTSCLVKSA 142 RI +A+T C+VKSA Sbjct 129 RISQEVNAYTFCIVKSA 145 >gi|240171020|ref|ZP_04749679.1| hypothetical protein MkanA1_17040 [Mycobacterium kansasii ATCC 12478] Length=134 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 66/119 (56%), Positives = 85/119 (72%), Gaps = 1/119 (0%) Query 25 VSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHEVVN 83 V RLH +FGS G + + II F PK V EVFG PGTVA+INYLD +AQP +V++ Sbjct 16 VYRLHGIFGSQDDTSAAGGISNEIIPFNPKQVTLEVFGAPGTVATINYLDVNAQPQQVLD 75 Query 84 AAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA 142 +PWS+TI TT AV ANVVA+G+ S+GCRITVN V+++ER VN +A+T CL KS+ Sbjct 76 TTLPWSYTITTTQPAVFANVVAQGNSNSIGCRITVNGVVKDERTVNKVNAYTFCLDKSS 134 >gi|118617529|ref|YP_905861.1| hypothetical protein MUL_1935 [Mycobacterium ulcerans Agy99] gi|118569639|gb|ABL04390.1| conserved membrane protein [Mycobacterium ulcerans Agy99] Length=134 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 64/119 (54%), Positives = 87/119 (74%), Gaps = 1/119 (0%) Query 25 VSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHEVVN 83 + RLH +FGSH +A + + I+ F PK V+ +VFG PG VA+INYLD +AQP +VV+ Sbjct 16 IYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDVFGAPGAVATINYLDVNAQPQQVVD 75 Query 84 AAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA 142 A +PWSFTI TT AV+ N+VA+G+G ++GCRITVN +++ERIVN A+T CL KS Sbjct 76 APLPWSFTITTTEPAVLGNMVAQGNGGTIGCRITVNGEVKDERIVNTPDAYTFCLDKSG 134 >gi|342858162|ref|ZP_08714817.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT 3035] gi|342133866|gb|EGT87046.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT 3035] Length=148 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/138 (52%), Positives = 97/138 (71%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQH-APDTGNLDPIIAFYPKHVLYEVFGPPG 64 KR W+ +V V+VVA+A + RLH + SH + ++G + I+ F PK V+ EVFG PG Sbjct 11 KRGWMVVVAVLVVALAGFGIYRLHGILWSHTSTSANSGLSNEIVPFNPKQVVLEVFGAPG 70 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 A+INYLD +AQP +V +A++PWSFTI TT AV+ NVVA+GDG +LGCRITVN +++ Sbjct 71 ATATINYLDVNAQPQQVKDASLPWSFTITTTEPAVIGNVVAQGDGDTLGCRITVNGEVKD 130 Query 125 ERIVNAYHAHTSCLVKSA 142 +R VN A+T CL KS Sbjct 131 QRTVNKVDAYTFCLDKSG 148 >gi|254776285|ref|ZP_05217801.1| MmpS4 protein [Mycobacterium avium subsp. avium ATCC 25291] Length=134 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/123 (53%), Positives = 86/123 (70%), Gaps = 1/123 (0%) Query 21 AAVTVSRLHSVFGSHQHAPDTGNL-DPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPH 79 A V RLH +FGSH + G + D F PKH+ EVFG PG VA+INY+D + QP Sbjct 12 AGFCVYRLHGIFGSHNNTSAAGGISDQTEPFSPKHITLEVFGNPGAVATINYVDINVQPR 71 Query 80 EVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLV 139 +V+NAA+PWS T+VTT +N+VA+G+ SLGCRITV+ +++ERIVN +A+T CLV Sbjct 72 QVLNAALPWSLTMVTTQPGAFSNLVAQGNSDSLGCRITVDGDVKDERIVNQVNAYTFCLV 131 Query 140 KSA 142 KSA Sbjct 132 KSA 134 >gi|118472449|ref|YP_884986.1| MmpS1 protein [Mycobacterium smegmatis str. MC2 155] gi|118173736|gb|ABK74632.1| MmpS1 protein [Mycobacterium smegmatis str. MC2 155] Length=138 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/137 (48%), Positives = 88/137 (65%), Gaps = 1/137 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGT 65 K+ WIP+V+ +V+ V+ + V RLH FGS + G I+ F PK ++YEV+GPPG+ Sbjct 3 KQAWIPLVLAVVLPVSGLVVWRLHEKFGSEDLNANAGAGIEIVQFNPKILVYEVYGPPGS 62 Query 66 VASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREE 125 A I+Y D DA H VN +PWS T+ TTL V AN++A G +GCR+TVN ++REE Sbjct 63 TAQISYFDTDANVHS-VNTTLPWSVTLSTTLPTVSANLMALGSNDEIGCRVTVNGIVREE 121 Query 126 RIVNAYHAHTSCLVKSA 142 + N A T CLVKSA Sbjct 122 KSANGIDAQTYCLVKSA 138 >gi|41409848|ref|NP_962684.1| MmpS1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398680|gb|AAS06300.1| MmpS1 [Mycobacterium avium subsp. paratuberculosis K-10] Length=154 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 70/138 (51%), Positives = 95/138 (69%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP-DTGNLDPIIAFYPKHVLYEVFGPPG 64 K+ WI +VIV V+AVA + VSRL + F + P +G D I F PK V+YEV+GPP Sbjct 17 KKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKRVVYEVYGPPK 76 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 TVA INYLD +AQP +V N A+PW+ +++TTL ++ NVVA+ D +GCRI VNEV+++ Sbjct 77 TVADINYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQADTDQIGCRIIVNEVVKD 136 Query 125 ERIVNAYHAHTSCLVKSA 142 ER + A T C+VKSA Sbjct 137 ERSADGVRAQTFCIVKSA 154 >gi|336460143|gb|EGO39048.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis S397] Length=140 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 70/138 (51%), Positives = 95/138 (69%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP-DTGNLDPIIAFYPKHVLYEVFGPPG 64 K+ WI +VIV V+AVA + VSRL + F + P +G D I F PK V+YEV+GPP Sbjct 3 KKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKRVVYEVYGPPK 62 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 TVA INYLD +AQP +V N A+PW+ +++TTL +V NVVA+ D +GCRI VN+V+++ Sbjct 63 TVADINYLDINAQPQKVANVALPWTLSVITTLPSVSVNVVAQADTDQIGCRIIVNDVVKD 122 Query 125 ERIVNAYHAHTSCLVKSA 142 ER + A T C+VKSA Sbjct 123 ERSADGVRAQTFCIVKSA 140 >gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacterium abscessus ATCC 19977] gi|169242198|emb|CAM63226.1| Putative membrane protein, MmpS family [Mycobacterium abscessus] Length=143 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 60/143 (42%), Positives = 91/143 (64%), Gaps = 1/143 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQH-APDTGNLDPIIAFYPKHVLYEV 59 MF ++ W+P++I VVA+ V R+ +FGS A N + + PK ++YE+ Sbjct 1 MFRTIRKIWMPLLIAAVVAIGGFAVFRVRGIFGSESFGASADNNAKDAVPYNPKTLVYEI 60 Query 60 FGPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVN 119 FG PG +A +NY + DAQP V N +PW+F IV+TL ++ N+VA+G+G +GCRITVN Sbjct 61 FGEPGAMADVNYFNEDAQPTRVDNVQLPWAFKIVSTLPSLSGNIVAQGNGDQIGCRITVN 120 Query 120 EVIREERIVNAYHAHTSCLVKSA 142 ++ ER+ ++A+ CLVKSA Sbjct 121 GEVKMERVSTEHNAYIYCLVKSA 143 >gi|333990133|ref|YP_004522747.1| hypothetical protein JDM601_1493 [Mycobacterium sp. JDM601] gi|333486101|gb|AEF35493.1| membrane protein MmpS5_1 [Mycobacterium sp. JDM601] Length=147 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/140 (46%), Positives = 95/140 (68%), Gaps = 0/140 (0%) Query 3 GVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGP 62 G+ +R+WIP+V ++V+ V++V V+RLH VF S + P G I+ F PK+V YE FGP Sbjct 8 GILRRYWIPLVFIVVIFVSSVIVTRLHKVFASQELNPHAGAGIEIVQFNPKYVAYEAFGP 67 Query 63 PGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVI 122 PGT A INY DA+A H++ + +PWS+T+VT L AV AN++ +G+ +GCRI +++ + Sbjct 68 PGTRADINYWDAEANVHQINDVPLPWSYTVVTVLPAVQANMIVQGNSGEIGCRIKIDDRL 127 Query 123 REERIVNAYHAHTSCLVKSA 142 +ER +A T CLVKS Sbjct 128 LDERRATGINAQTFCLVKSG 147 >gi|296170516|ref|ZP_06852102.1| MmpS family membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894828|gb|EFG74551.1| MmpS family membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=142 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/142 (50%), Positives = 99/142 (70%), Gaps = 0/142 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF 60 M V KR WIP+V+V+V+A++A+ VSRLH +FGS + G I+ F PK V+Y++ Sbjct 1 MTRVLKRAWIPLVLVVVLALSALIVSRLHKIFGSQDLNANAGKGIEIVQFNPKVVVYDIT 60 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GPPG A+INY D +A H+V A +PWS TI TTL +V AN++A+ D + +GC+ITV+ Sbjct 61 GPPGATANINYWDENANTHQVNAAPLPWSTTISTTLPSVSANIMAQSDSSEIGCKITVDG 120 Query 121 VIREERIVNAYHAHTSCLVKSA 142 V+RE+ N ++A T CLVKSA Sbjct 121 VVREQHSSNGHNAQTFCLVKSA 142 >gi|342859455|ref|ZP_08716109.1| membrane transporter [Mycobacterium colombiense CECT 3035] gi|342133696|gb|EGT86899.1| membrane transporter [Mycobacterium colombiense CECT 3035] Length=134 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/134 (49%), Positives = 91/134 (68%), Gaps = 1/134 (0%) Query 10 IPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTG-NLDPIIAFYPKHVLYEVFGPPGTVAS 68 +P+V+V VA+ + V RL VFGS TG + +P+ A + K V YEV+GP GT S Sbjct 1 MPLVVVAAVALGGIAVDRLRGVFGSDAIFTATGTSAEPLEASHVKSVTYEVYGPSGTTGS 60 Query 69 INYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIV 128 +NYLD +A+P +V A+PW+ TI TT+ AV+A++VA+G G +GCRITVN +++ER Sbjct 61 VNYLDNNAEPKQVDFTALPWTLTITTTVPAVIASLVAQGTGDDIGCRITVNGELKDERSS 120 Query 129 NAYHAHTSCLVKSA 142 HA TSCLVK+A Sbjct 121 AGRHAQTSCLVKAA 134 >gi|118464951|ref|YP_880981.1| Mmps1 protein [Mycobacterium avium 104] gi|254774572|ref|ZP_05216088.1| Mmps1 protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118166238|gb|ABK67135.1| Mmps1 protein [Mycobacterium avium 104] Length=130 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 62/130 (48%), Positives = 93/130 (72%), Gaps = 0/130 (0%) Query 13 VIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVASINYL 72 ++V+V+AV+A+ VSRLH +FGS + G I+ F PK V+YE+ G PG+ A+INY Sbjct 1 MLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQFNPKVVVYEISGAPGSTANINYW 60 Query 73 DADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYH 132 D +A H+V NA +PWS TI TTL +V AN++A+ DG+++ C+ITV+ V+R+ + + ++ Sbjct 61 DENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDNQNSDGHN 120 Query 133 AHTSCLVKSA 142 A T CLVKSA Sbjct 121 AQTFCLVKSA 130 >gi|240172456|ref|ZP_04751115.1| membrane transporter [Mycobacterium kansasii ATCC 12478] Length=143 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 64/143 (45%), Positives = 91/143 (64%), Gaps = 1/143 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTG-NLDPIIAFYPKHVLYEV 59 M KR WIP+V+VI + + V RL VFGS TG N I + K V YEV Sbjct 1 MLTFLKRGWIPLVVVIALVAGGIAVDRLRGVFGSDPIFTWTGANSGVIESINTKRVTYEV 60 Query 60 FGPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVN 119 FGP GT S++YL+ + QP + ++PW++T+ TT+ AV+ANVVA+G+ S+GCRITVN Sbjct 61 FGPAGTAGSVSYLNKETQPEQASFTSLPWTYTMTTTIPAVIANVVAQGNSDSIGCRITVN 120 Query 120 EVIREERIVNAYHAHTSCLVKSA 142 +++E+ + +HA CLVK+A Sbjct 121 GAVKDEQSSSGHHAQAFCLVKAA 143 >gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155] gi|82393549|gb|ABB72060.1| MmpS4 [Mycobacterium smegmatis str. MC2 155] gi|118175211|gb|ABK76107.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155] Length=139 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 61/139 (44%), Positives = 90/139 (65%), Gaps = 3/139 (2%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP--DTGNLDPIIAFYPKHVLYEVFGPP 63 +R WIP++++ VVAV TVSRLH+VFG+ + DT D F PK + YEVFGPP Sbjct 2 RRLWIPLLVIAVVAVGGFTVSRLHNVFGAEKRPSYADTKAADSK-PFDPKRLTYEVFGPP 60 Query 64 GTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIR 123 GT+A I+Y D D+ P V ++PWS T V +++A+GD ++GCRI V++ ++ Sbjct 61 GTLADISYFDEDSNPQFVEKVSLPWSLHFDIGKTTAVGSIMAQGDSDTIGCRIIVDDEVK 120 Query 124 EERIVNAYHAHTSCLVKSA 142 E++ N +A TSCL+K+A Sbjct 121 AEKVSNQTNAFTSCLLKAA 139 >gi|15828277|ref|NP_302540.1| small membrane protein [Mycobacterium leprae TN] gi|221230754|ref|YP_002504170.1| hypothetical protein MLBr_02377 [Mycobacterium leprae Br4923] gi|1731226|sp|P54880.1|MMPS4_MYCLE RecName: Full=Putative membrane protein mmpS4 gi|699242|gb|AAA63005.1| u1740w [Mycobacterium leprae] gi|13093970|emb|CAC31893.1| conserved small membrane protein [Mycobacterium leprae] gi|219933861|emb|CAR72475.1| conserved small membrane protein [Mycobacterium leprae Br4923] Length=154 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 67/143 (47%), Positives = 94/143 (66%), Gaps = 1/143 (0%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP-DTGNLDPIIAFYPKHVLYEV 59 +F + R WIP+VI++V+ V V R+HS F S + NL F PK ++YEV Sbjct 12 IFKLLSRIWIPLVILVVLVVGGFVVYRVHSYFASEKRESYADSNLGSSKPFNPKQIVYEV 71 Query 60 FGPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVN 119 FGPPGTVA I+Y DA++ P + A +PWS + TTL AV+ N+VA+G+ S+GCRI V+ Sbjct 72 FGPPGTVADISYFDANSDPQRIDGAQLPWSLLMTTTLAAVMGNLVAQGNTDSIGCRIIVD 131 Query 120 EVIREERIVNAYHAHTSCLVKSA 142 V++ ER+ N +A+T CLVKSA Sbjct 132 GVVKAERVSNEVNAYTYCLVKSA 154 >gi|317509015|ref|ZP_07966646.1| membrane protein [Segniliparus rugosus ATCC BAA-974] gi|316252670|gb|EFV12109.1| membrane protein [Segniliparus rugosus ATCC BAA-974] Length=140 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/141 (45%), Positives = 89/141 (64%), Gaps = 5/141 (3%) Query 4 VAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSH--QHAPDTGNLDPIIAFYPKHVLYEVFG 61 + +R W+P++IV VVA A+ V R+H +FG+ + A N DP+I PK V+YE+ G Sbjct 3 ILRRIWLPLIIVAVVAGASFAVYRIHGIFGAETVRAAEIKDNTDPVI---PKDVIYEISG 59 Query 62 PPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEV 121 PPGT +NYLD A+PH +PW I T L ++ A VVA+GD SL CRITVN Sbjct 60 PPGTRGEVNYLDERAKPHREQFTTLPWKLVISTKLNSIFAQVVAQGDSDSLSCRITVNGE 119 Query 122 IREERIVNAYHAHTSCLVKSA 142 +R+++ ++A+ CLVKSA Sbjct 120 VRDQQSSTDHNAYIGCLVKSA 140 >gi|240169833|ref|ZP_04748492.1| membrane protein MmpS4_2 [Mycobacterium kansasii ATCC 12478] Length=139 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/137 (48%), Positives = 86/137 (63%), Gaps = 2/137 (1%) Query 7 RFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP-DTGNLDPIIAFYPKHVLYEVFGPPGT 65 R WI +VI+ VV TV R+ F S + A NLD F PK + YEVFGPPGT Sbjct 4 RTWIALVILAVVIAGGFTVHRIRGFFASEKRASYSDSNLDSK-PFNPKQITYEVFGPPGT 62 Query 66 VASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREE 125 VA I+Y D ++ P V A +PWS T L AV+ N+VA+GD S+GCRITV+ V++ E Sbjct 63 VADISYFDVNSDPQRVDQAVLPWSLHFTTNLAAVMGNLVAQGDSDSIGCRITVDGVVKAE 122 Query 126 RIVNAYHAHTSCLVKSA 142 ++ + +A+T CLVKSA Sbjct 123 KVSHEVNAYTYCLVKSA 139 >gi|5524339|gb|AAD44232.1|AF143772_38 TmtpA [Mycobacterium avium] Length=221 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/139 (49%), Positives = 90/139 (65%), Gaps = 3/139 (2%) Query 3 GVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP--DTGNLDPIIAFYPKHVLYEVF 60 G KR WIP+VIV VV +TVSRLH +FGS + DT D F PKHV YEVF Sbjct 81 GFLKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQD-TKPFNPKHVKYEVF 139 Query 61 GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE 120 GP G +A I+Y DA+ +P + +PW+F I TTL ++V NVVA+G+ SLGCRI V+ Sbjct 140 GPAGAMADISYFDANGEPQHINGVELPWTFDISTTLPSIVGNVVAQGNSDSLGCRILVDG 199 Query 121 VIREERIVNAYHAHTSCLV 139 V++ ERI + +A T C++ Sbjct 200 VVKTERISHELNAFTYCVL 218 >gi|296167298|ref|ZP_06849700.1| MmpS family membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897242|gb|EFG76846.1| MmpS family membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=143 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/138 (46%), Positives = 94/138 (69%), Gaps = 1/138 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGN-LDPIIAFYPKHVLYEVFGPPG 64 KR W+P+V+V VA+ + + RL VFGS TG+ +P++A + K V YEV+GP G Sbjct 6 KRAWVPLVVVAAVALGGIAIDRLRGVFGSDPIFTATGSSAEPLVASHIKRVTYEVYGPSG 65 Query 65 TVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIRE 124 T S++YL+ +AQP + + +PW+FTI TT+ AV+A+VVA+GD +GCRI+VN +++ Sbjct 66 TTGSVSYLNKNAQPEQADFSTLPWTFTITTTVPAVIASVVAQGDSDDIGCRISVNGEVKD 125 Query 125 ERIVNAYHAHTSCLVKSA 142 ER +A TSCLVK+ Sbjct 126 ERSSAGRNAQTSCLVKAG 143 >gi|41408336|ref|NP_961172.1| hypothetical protein MAP2238 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396692|gb|AAS04555.1| hypothetical protein MAP_2238 [Mycobacterium avium subsp. paratuberculosis K-10] Length=164 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 67/137 (49%), Positives = 99/137 (73%), Gaps = 0/137 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGT 65 K+ WIP+V+V+V+AV+A+ VSRLH +FGS + G I+ F PK V+YE+ G PG+ Sbjct 28 KQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQFNPKVVVYEISGAPGS 87 Query 66 VASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREE 125 A+INY D +A H+V NA +PWS TI TTL +V AN++A+ DG+++ C+ITV+ V+R+ Sbjct 88 TANINYWDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDN 147 Query 126 RIVNAYHAHTSCLVKSA 142 + + ++A T CLVKSA Sbjct 148 QNSDGHNAQTFCLVKSA 164 >gi|342858823|ref|ZP_08715478.1| MmpS4 protein [Mycobacterium colombiense CECT 3035] gi|342134527|gb|EGT87707.1| MmpS4 protein [Mycobacterium colombiense CECT 3035] Length=159 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 67/141 (48%), Positives = 93/141 (66%), Gaps = 3/141 (2%) Query 1 MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAP--DTGNLDPIIAFYPKHVLYE 58 +FG R WIP+VIV VV +TVSRLH VFGS + ++ D F PKHV YE Sbjct 17 IFGFLGRLWIPLVIVAVVVAGGMTVSRLHGVFGSEKRPSYAESRQQD-TKPFNPKHVKYE 75 Query 59 VFGPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITV 118 VFGP G++A I+Y DA+ +P+ + +PW+F I TTL ++V NVVA+G+ SLGCRI V Sbjct 76 VFGPAGSMADISYFDANGEPNHITGIELPWTFDISTTLPSIVGNVVAQGNSDSLGCRIVV 135 Query 119 NEVIREERIVNAYHAHTSCLV 139 + V++ ERI + +A T C++ Sbjct 136 DGVVKAERISHELNAFTYCVL 156 >gi|342857819|ref|ZP_08714475.1| hypothetical protein MCOL_03055 [Mycobacterium colombiense CECT 3035] gi|342135152|gb|EGT88318.1| hypothetical protein MCOL_03055 [Mycobacterium colombiense CECT 3035] Length=139 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 68/137 (50%), Positives = 99/137 (73%), Gaps = 0/137 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGT 65 ++ WIP+++V+V+AV+A+ VSRLH +FGS + G I+ F PK V+YE+ GPPG Sbjct 3 RQGWIPLLLVVVLAVSALVVSRLHKLFGSEDLNANAGKGIEIVQFNPKVVVYEISGPPGA 62 Query 66 VASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREE 125 A+INY DADA H+V NA +PWS TI TTL +V AN++A+ DG+++ C+ITV+ V+R Sbjct 63 TANINYWDADANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRAN 122 Query 126 RIVNAYHAHTSCLVKSA 142 + + ++A T CLVKSA Sbjct 123 QNSDGHNAQTFCLVKSA 139 >gi|336458226|gb|EGO37207.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis S397] Length=155 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/137 (49%), Positives = 99/137 (73%), Gaps = 0/137 (0%) Query 6 KRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGT 65 K+ WIP+V+V+V+AV+A+ VSRLH +FGS + G I+ F PK V+YE+ G PG+ Sbjct 19 KQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQFNPKVVVYEISGAPGS 78 Query 66 VASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREE 125 A+INY D +A H+V NA +PWS TI TTL +V AN++A+ DG+++ C+ITV+ V+R+ Sbjct 79 TANINYWDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDN 138 Query 126 RIVNAYHAHTSCLVKSA 142 + + ++A T CLVKSA Sbjct 139 QNSDGHNAQTFCLVKSA 155 Lambda K H 0.324 0.135 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129798780480 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40