BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0411c Length=328 Score E Sequences producing significant alignments: (Bits) Value gi|15607552|ref|NP_214925.1| glutamine-binding lipoprotein [Myco... 659 0.0 gi|323721082|gb|EGB30144.1| glutamine-binding lipoprotein glnH [... 659 0.0 gi|289744107|ref|ZP_06503485.1| glutamine-binding lipoprotein gl... 658 0.0 gi|308369386|ref|ZP_07666727.1| glutamine-binding lipoprotein gl... 623 1e-176 gi|118618243|ref|YP_906575.1| glutamine-binding lipoprotein GlnH... 558 4e-157 gi|15827074|ref|NP_301337.1| glutamine-binding protein [Mycobact... 536 2e-150 gi|4154051|emb|CAA22704.1| putative glutamine-binding protein [M... 535 3e-150 gi|240168877|ref|ZP_04747536.1| putative glutamine-binding lipop... 531 5e-149 gi|254818982|ref|ZP_05223983.1| GlnH [Mycobacterium intracellula... 513 2e-143 gi|41409992|ref|NP_962828.1| GlnH [Mycobacterium avium subsp. pa... 507 1e-141 gi|296167869|ref|ZP_06850052.1| glutamine ABC superfamily ATP bi... 505 3e-141 gi|118465451|ref|YP_883877.1| extracellular solute-binding prote... 504 1e-140 gi|254777189|ref|ZP_05218705.1| extracellular solute-binding pro... 503 1e-140 gi|342859109|ref|ZP_08715763.1| GlnH [Mycobacterium colombiense ... 488 5e-136 gi|145220806|ref|YP_001131484.1| extracellular solute-binding pr... 482 4e-134 gi|315442241|ref|YP_004075120.1| amino acid ABC transporter subs... 480 1e-133 gi|333989022|ref|YP_004521636.1| glutamine-binding lipoprotein G... 478 5e-133 gi|120401719|ref|YP_951548.1| extracellular solute-binding prote... 471 5e-131 gi|126433143|ref|YP_001068834.1| extracellular solute-binding pr... 470 1e-130 gi|118468998|ref|YP_885192.1| extracellular solute-binding prote... 470 2e-130 gi|108797521|ref|YP_637718.1| extracellular solute-binding prote... 468 7e-130 gi|169631301|ref|YP_001704950.1| glutamine-binding protein GlnH ... 421 6e-116 gi|226361323|ref|YP_002779101.1| ABC transporter substrate-bindi... 341 9e-92 gi|289748896|ref|ZP_06508274.1| glutamine-binding lipoprotein gl... 340 3e-91 gi|111019187|ref|YP_702159.1| amino acid ABC transporter ATP-bin... 339 3e-91 gi|226304964|ref|YP_002764922.1| ABC transporter substrate-bindi... 333 2e-89 gi|333918207|ref|YP_004491788.1| putative ABC transporter substr... 333 3e-89 gi|229493071|ref|ZP_04386866.1| bacterial extracellular solute-b... 325 5e-87 gi|54027317|ref|YP_121559.1| putative transporter substrate-bind... 324 1e-86 gi|111020580|ref|YP_703552.1| glutamate binding protein solute b... 317 1e-84 gi|226362801|ref|YP_002780579.1| ABC transporter substrate-bindi... 310 2e-82 gi|312141243|ref|YP_004008579.1| high affinity substrate-binding... 310 3e-82 gi|325673926|ref|ZP_08153616.1| glutamine ABC superfamily ATP bi... 309 4e-82 gi|262204220|ref|YP_003275428.1| extracellular solute-binding pr... 300 1e-79 gi|319948590|ref|ZP_08022716.1| glutamine-binding protein GlnH [... 299 5e-79 gi|296141428|ref|YP_003648671.1| family 3 extracellular solute-b... 291 1e-76 gi|226362770|ref|YP_002780548.1| ABC transporter substrate-bindi... 290 3e-76 gi|343924493|ref|ZP_08764042.1| putative ABC transporter substra... 281 1e-73 gi|256377588|ref|YP_003101248.1| family 3 extracellular solute-b... 275 9e-72 gi|111020803|ref|YP_703775.1| glutamine ABC transporter substrat... 271 7e-71 gi|302523732|ref|ZP_07276074.1| amino acid ABC transporter ATP-b... 271 1e-70 gi|226359784|ref|YP_002777562.1| ABC transporter substrate-bindi... 263 3e-68 gi|300782280|ref|YP_003762571.1| ABC transporter substrate-bindi... 263 4e-68 gi|326384625|ref|ZP_08206303.1| extracellular solute-binding pro... 261 1e-67 gi|226359768|ref|YP_002777546.1| ABC transporter substrate-bindi... 252 5e-65 gi|257057662|ref|YP_003135494.1| periplasmic component of amino ... 248 1e-63 gi|111017250|ref|YP_700222.1| amino acid ABC transporter peripla... 229 3e-58 gi|336320643|ref|YP_004600611.1| family 3 extracellular solute-b... 229 5e-58 gi|227547864|ref|ZP_03977913.1| amino acid ABC superfamily ATP b... 228 8e-58 gi|306836971|ref|ZP_07469921.1| amino acid ABC superfamily ATP b... 227 2e-57 >gi|15607552|ref|NP_214925.1| glutamine-binding lipoprotein [Mycobacterium tuberculosis H37Rv] gi|15839797|ref|NP_334834.1| amino acid ABC transporter, amino acid-binding protein [Mycobacterium tuberculosis CDC1551] gi|31791589|ref|NP_854082.1| glutamine-binding lipoprotein [Mycobacterium bovis AF2122/97] 61 more sequence titles Length=328 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/328 (100%), Positives = 328/328 (100%), Gaps = 0/328 (0%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD Sbjct 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 Query 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV Sbjct 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 Query 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL Sbjct 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 Query 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ Sbjct 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 Query 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN Sbjct 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 Query 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 DGTWNTLYRKWLTVLGPAPAPPTPRYVD Sbjct 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 >gi|323721082|gb|EGB30144.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis CDC1551A] gi|339293464|gb|AEJ45575.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis CCDC5079] gi|339297107|gb|AEJ49217.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis CCDC5180] Length=329 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/328 (100%), Positives = 328/328 (100%), Gaps = 0/328 (0%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD Sbjct 2 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 61 Query 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV Sbjct 62 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 121 Query 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL Sbjct 122 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 181 Query 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ Sbjct 182 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 241 Query 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN Sbjct 242 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 301 Query 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 DGTWNTLYRKWLTVLGPAPAPPTPRYVD Sbjct 302 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 329 >gi|289744107|ref|ZP_06503485.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis 02_1987] gi|289684635|gb|EFD52123.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis 02_1987] Length=337 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/328 (99%), Positives = 328/328 (100%), Gaps = 0/328 (0%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 +TRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD Sbjct 10 ITRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 69 Query 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV Sbjct 70 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 129 Query 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL Sbjct 130 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 189 Query 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ Sbjct 190 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 249 Query 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN Sbjct 250 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 309 Query 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 DGTWNTLYRKWLTVLGPAPAPPTPRYVD Sbjct 310 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 337 >gi|308369386|ref|ZP_07666727.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu002] gi|308370400|ref|ZP_07666925.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu003] gi|308372885|ref|ZP_07667473.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu005] gi|308375151|ref|ZP_07442886.2| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu007] gi|308327701|gb|EFP16552.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu002] gi|308332063|gb|EFP20914.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu003] gi|308339455|gb|EFP28306.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu005] gi|308347232|gb|EFP36083.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis SUMu007] Length=308 Score = 623 bits (1607), Expect = 1e-176, Method: Compositional matrix adjust. Identities = 308/308 (100%), Positives = 308/308 (100%), Gaps = 0/308 (0%) Query 21 MVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAE 80 MVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAE Sbjct 1 MVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAE 60 Query 81 ADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYR 140 ADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYR Sbjct 61 ADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYR 120 Query 141 ILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDL 200 ILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDL Sbjct 121 ILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDL 180 Query 201 SGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEE 260 SGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEE Sbjct 181 SGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEE 240 Query 261 DPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPA 320 DPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPA Sbjct 241 DPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPA 300 Query 321 PPTPRYVD 328 PPTPRYVD Sbjct 301 PPTPRYVD 308 >gi|118618243|ref|YP_906575.1| glutamine-binding lipoprotein GlnH [Mycobacterium ulcerans Agy99] gi|183980737|ref|YP_001849028.1| glutamine-binding lipoprotein GlnH [Mycobacterium marinum M] gi|118570353|gb|ABL05104.1| glutamine-binding lipoprotein GlnH [Mycobacterium ulcerans Agy99] gi|183174063|gb|ACC39173.1| glutamine-binding lipoprotein GlnH [Mycobacterium marinum M] Length=328 Score = 558 bits (1438), Expect = 4e-157, Method: Compositional matrix adjust. Identities = 293/328 (90%), Positives = 306/328 (94%), Gaps = 0/328 (0%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 M R L RAA+ LA LAL + L CGHSE L VE+TPTLPLPTPVGME+MPP+PPLP D Sbjct 1 MRRLPGLRRAASALAVLALVITLDGCGHSEPLKVESTPTLPLPTPVGMEVMPPEPPLPAD 60 Query 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 SSSQDCDPTASLRPF TKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV Sbjct 61 SSSQDCDPTASLRPFPTKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 Query 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 DIA EVARDIFG P+HVEYRILSAAER+TALQ SQVD+VVKTM+ITCERRKLVNFSTVYL Sbjct 121 DIASEVARDIFGGPTHVEYRILSAAERITALQSSQVDVVVKTMTITCERRKLVNFSTVYL 180 Query 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 DANQRIL RDSPI KVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ Sbjct 181 DANQRILTSRDSPIFKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 Query 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 QREIDAVSTDDTILAGLVEEDPYLHIVGP+MA+QPYG+GINLDNTGLVRFVNGTLERIRN Sbjct 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPNMANQPYGIGINLDNTGLVRFVNGTLERIRN 300 Query 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 DGTWNTLYRKWL+VLGPAPAPP PRYVD Sbjct 301 DGTWNTLYRKWLSVLGPAPAPPRPRYVD 328 >gi|15827074|ref|NP_301337.1| glutamine-binding protein [Mycobacterium leprae TN] gi|221229552|ref|YP_002502968.1| putative glutamine-binding protein [Mycobacterium leprae Br4923] gi|13092622|emb|CAC29811.1| putative glutamine-binding protein [Mycobacterium leprae] gi|219932659|emb|CAR70396.1| putative glutamine-binding protein [Mycobacterium leprae Br4923] Length=326 Score = 536 bits (1380), Expect = 2e-150, Method: Compositional matrix adjust. Identities = 260/328 (80%), Positives = 291/328 (89%), Gaps = 3/328 (0%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 MTR+ + RA + LA AM+LA+CGH+E L V + PTLP PTPVGME +PP+ LP D Sbjct 2 MTRQFKIQRACSVLA---TAMMLAACGHAELLTVASMPTLPPPTPVGMEQVPPELLLPQD 58 Query 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 ++ +DCDPTASLRPF TKAEADAAVA+IRARGRLIVGL+IGSNLFSFRDPITGEITGFD+ Sbjct 59 NTEEDCDPTASLRPFPTKAEADAAVAEIRARGRLIVGLEIGSNLFSFRDPITGEITGFDI 118 Query 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 DIAGEVARDIFG PSH+EYRILS A R+TALQKS+VDI+VKTM+ITC+RRKLVNFSTVYL Sbjct 119 DIAGEVARDIFGTPSHMEYRILSTAARITALQKSEVDIIVKTMTITCKRRKLVNFSTVYL 178 Query 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 DA QRILAPRDSPITK SDLS KRVC+ RGTTSL ++ E+ PPP+IVS NWADCLVA+Q Sbjct 179 DAKQRILAPRDSPITKPSDLSNKRVCMTRGTTSLHQVSEVVPPPIIVSAENWADCLVAMQ 238 Query 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 QREIDA+STDD ILAGLVEEDPYLHIVGP+MA QPYG+GINL+NT LVRFVNGTLERIR Sbjct 239 QREIDAISTDDAILAGLVEEDPYLHIVGPNMATQPYGIGINLNNTTLVRFVNGTLERIRR 298 Query 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 DGTW TLYRKWLTVLGPAPAPPTPRYVD Sbjct 299 DGTWITLYRKWLTVLGPAPAPPTPRYVD 326 >gi|4154051|emb|CAA22704.1| putative glutamine-binding protein [Mycobacterium leprae] Length=325 Score = 535 bits (1379), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 260/328 (80%), Positives = 291/328 (89%), Gaps = 3/328 (0%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 MTR+ + RA + LA AM+LA+CGH+E L V + PTLP PTPVGME +PP+ LP D Sbjct 1 MTRQFKIQRACSVLA---TAMMLAACGHAELLTVASMPTLPPPTPVGMEQVPPELLLPQD 57 Query 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 ++ +DCDPTASLRPF TKAEADAAVA+IRARGRLIVGL+IGSNLFSFRDPITGEITGFD+ Sbjct 58 NTEEDCDPTASLRPFPTKAEADAAVAEIRARGRLIVGLEIGSNLFSFRDPITGEITGFDI 117 Query 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 DIAGEVARDIFG PSH+EYRILS A R+TALQKS+VDI+VKTM+ITC+RRKLVNFSTVYL Sbjct 118 DIAGEVARDIFGTPSHMEYRILSTAARITALQKSEVDIIVKTMTITCKRRKLVNFSTVYL 177 Query 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 DA QRILAPRDSPITK SDLS KRVC+ RGTTSL ++ E+ PPP+IVS NWADCLVA+Q Sbjct 178 DAKQRILAPRDSPITKPSDLSNKRVCMTRGTTSLHQVSEVVPPPIIVSAENWADCLVAMQ 237 Query 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 QREIDA+STDD ILAGLVEEDPYLHIVGP+MA QPYG+GINL+NT LVRFVNGTLERIR Sbjct 238 QREIDAISTDDAILAGLVEEDPYLHIVGPNMATQPYGIGINLNNTTLVRFVNGTLERIRR 297 Query 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 DGTW TLYRKWLTVLGPAPAPPTPRYVD Sbjct 298 DGTWITLYRKWLTVLGPAPAPPTPRYVD 325 >gi|240168877|ref|ZP_04747536.1| putative glutamine-binding lipoprotein [Mycobacterium kansasii ATCC 12478] Length=328 Score = 531 bits (1368), Expect = 5e-149, Method: Compositional matrix adjust. Identities = 272/303 (90%), Positives = 291/303 (97%), Gaps = 0/303 (0%) Query 26 CGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAV 85 CGHSE+L VE TPTLP PTPVGME+MPP+PPLPPD++SQDC+PTASLRPF TKAEADAAV Sbjct 26 CGHSESLKVETTPTLPYPTPVGMEVMPPEPPLPPDTASQDCNPTASLRPFRTKAEADAAV 85 Query 86 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAA 145 A+I RGRLIVGLDIGSNLFSFRDPITG+ITGFDVDIAGEVARDIFG PSHVEYRILSAA Sbjct 86 ANIHERGRLIVGLDIGSNLFSFRDPITGDITGFDVDIAGEVARDIFGSPSHVEYRILSAA 145 Query 146 ERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRV 205 ER+TALQ SQVD+VVKTM+ITCERRKLVNFSTVYLDANQRILAPRDS I+KVSDLSGKRV Sbjct 146 ERITALQTSQVDVVVKTMTITCERRKLVNFSTVYLDANQRILAPRDSSISKVSDLSGKRV 205 Query 206 CVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLH 265 CVARGTTSLRRIREIAPPPVIVSVVNWADCLVA+QQR+IDAVSTDD+ILAGLVEEDPYLH Sbjct 206 CVARGTTSLRRIREIAPPPVIVSVVNWADCLVAMQQRQIDAVSTDDSILAGLVEEDPYLH 265 Query 266 IVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPR 325 IVGPDMA+QPYG+GINLDNTGLVRFVNGTLERIR DGTWNTLYRKWL+VLGPAP PP PR Sbjct 266 IVGPDMANQPYGIGINLDNTGLVRFVNGTLERIRTDGTWNTLYRKWLSVLGPAPVPPQPR 325 Query 326 YVD 328 Y+D Sbjct 326 YLD 328 >gi|254818982|ref|ZP_05223983.1| GlnH [Mycobacterium intracellulare ATCC 13950] Length=325 Score = 513 bits (1321), Expect = 2e-143, Method: Compositional matrix adjust. Identities = 274/328 (84%), Positives = 295/328 (90%), Gaps = 3/328 (0%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 M R LL RA A + VLA CGH+E+L V + PTLP PTPVGME +PPQPPLPPD Sbjct 1 MIRLPLLRRACTVAATVC---VLAGCGHTESLHVASVPTLPPPTPVGMEQLPPQPPLPPD 57 Query 61 SSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 120 +QDCD TASLRPF TKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV Sbjct 58 GPNQDCDLTASLRPFPTKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDV 117 Query 121 DIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYL 180 D+AGE+ARDIFG PSHVEYRILS+ ERVTALQ+ +VDIVVKTM+ITC+RRKLVNFSTVYL Sbjct 118 DLAGEIARDIFGAPSHVEYRILSSDERVTALQRGEVDIVVKTMTITCDRRKLVNFSTVYL 177 Query 181 DANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQ 240 DANQRILAPRDS I KVSDLSGKRVCVA+GTTSL RIR+I PPPVIVSVVNWADCLVA+Q Sbjct 178 DANQRILAPRDSSIVKVSDLSGKRVCVAKGTTSLHRIRQIDPPPVIVSVVNWADCLVAMQ 237 Query 241 QREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRN 300 QREIDAVSTDD+ILAGLVEEDPYLHIVGP+MA QPYG+GINL+NT LVRFVNGTLERIR Sbjct 238 QREIDAVSTDDSILAGLVEEDPYLHIVGPNMATQPYGIGINLNNTPLVRFVNGTLERIRR 297 Query 301 DGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 DGTWNTLYRKWLTVLGPAPAPPTPRY+D Sbjct 298 DGTWNTLYRKWLTVLGPAPAPPTPRYLD 325 >gi|41409992|ref|NP_962828.1| GlnH [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398825|gb|AAS06444.1| GlnH [Mycobacterium avium subsp. paratuberculosis K-10] Length=309 Score = 507 bits (1305), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 265/308 (87%), Positives = 288/308 (94%), Gaps = 0/308 (0%) Query 21 MVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAE 80 +V A CGH+E+L V + PTLP PTPVGME +PPQPPLPPD Q+CD TASLRPF TKAE Sbjct 2 LVAAGCGHTESLRVASVPTLPPPTPVGMEQLPPQPPLPPDGPDQNCDLTASLRPFPTKAE 61 Query 81 ADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYR 140 ADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGE+ARDIFG PSHVEYR Sbjct 62 ADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEIARDIFGAPSHVEYR 121 Query 141 ILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDL 200 ILS+ ERVTALQ+ +VD+VVKTM+ITC+RRK VNFSTVYLDANQRILAPRDSPITKVSDL Sbjct 122 ILSSDERVTALQRGEVDVVVKTMTITCDRRKQVNFSTVYLDANQRILAPRDSPITKVSDL 181 Query 201 SGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEE 260 SGKRVCVA+GTTSL RIR+I PPP++VSVVNWADCLVA+QQREIDAVSTDD+ILAGLVEE Sbjct 182 SGKRVCVAKGTTSLHRIRQIDPPPIVVSVVNWADCLVAMQQREIDAVSTDDSILAGLVEE 241 Query 261 DPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPA 320 DPYLHIVGP+MA QPYG+GINL+NTGLVRFVNGTLERIR DGTWNTLYRKWLTVLGPAPA Sbjct 242 DPYLHIVGPNMATQPYGIGINLNNTGLVRFVNGTLERIRRDGTWNTLYRKWLTVLGPAPA 301 Query 321 PPTPRYVD 328 PPTPRY+D Sbjct 302 PPTPRYLD 309 >gi|296167869|ref|ZP_06850052.1| glutamine ABC superfamily ATP binding cassette transporter, binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896994|gb|EFG76617.1| glutamine ABC superfamily ATP binding cassette transporter, binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=326 Score = 505 bits (1301), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 263/304 (87%), Positives = 283/304 (94%), Gaps = 0/304 (0%) Query 25 SCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAA 84 CGH+E+L + PTLP PTPVGM+ +PP+PPLPPD SQ CD TASLRPF TKA+ADAA Sbjct 23 GCGHTESLTMATVPTLPPPTPVGMQQLPPEPPLPPDDPSQGCDLTASLRPFPTKAQADAA 82 Query 85 VADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSA 144 VADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGE+ARDIFG PSHVEYRILS+ Sbjct 83 VADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEIARDIFGAPSHVEYRILSS 142 Query 145 AERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKR 204 ERVTALQ+S+VD+VVKTM+ITCERRK VNFSTVYLDANQRILAPRDSPITKV DLSGKR Sbjct 143 DERVTALQRSEVDVVVKTMTITCERRKQVNFSTVYLDANQRILAPRDSPITKVGDLSGKR 202 Query 205 VCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYL 264 VCVA+GTTSL RIR+I PPPVIVSVVNWADCLVA+QQREIDAVSTDD+ILAGLVEEDPYL Sbjct 203 VCVAKGTTSLHRIRQIDPPPVIVSVVNWADCLVAMQQREIDAVSTDDSILAGLVEEDPYL 262 Query 265 HIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTP 324 HIVGP+MA QPYG+GINL NTGLVRFVNGTLERIR DGTWNTLYRKWLTVLGPAPAPPTP Sbjct 263 HIVGPNMATQPYGIGINLTNTGLVRFVNGTLERIRRDGTWNTLYRKWLTVLGPAPAPPTP 322 Query 325 RYVD 328 RY+D Sbjct 323 RYLD 326 >gi|118465451|ref|YP_883877.1| extracellular solute-binding protein, family protein 3 [Mycobacterium avium 104] gi|118166738|gb|ABK67635.1| Bacterial extracellular solute-binding protein, family protein 3 [Mycobacterium avium 104] Length=334 Score = 504 bits (1297), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 263/303 (87%), Positives = 285/303 (95%), Gaps = 0/303 (0%) Query 26 CGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAV 85 CGH+E+L V + PTLP PTPVGME +PPQPPLPPD Q+CD TASLRPF TKAEADAAV Sbjct 32 CGHTESLRVASVPTLPPPTPVGMEQLPPQPPLPPDGPDQNCDLTASLRPFPTKAEADAAV 91 Query 86 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAA 145 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGE+ARDIFG PSHVEYRILS+ Sbjct 92 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEIARDIFGAPSHVEYRILSSD 151 Query 146 ERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRV 205 ERVTALQ+ +VD+VVKTM+ITC+RRK VNFSTVYLDANQRILAPRDSPITKVSDLSGKRV Sbjct 152 ERVTALQRGEVDVVVKTMTITCDRRKQVNFSTVYLDANQRILAPRDSPITKVSDLSGKRV 211 Query 206 CVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLH 265 CVA+GTTSL RIR+I PPP++VSVVNWADCLVA+QQREIDAVSTDD+ILAGLVEEDPYLH Sbjct 212 CVAKGTTSLHRIRQIDPPPIVVSVVNWADCLVAMQQREIDAVSTDDSILAGLVEEDPYLH 271 Query 266 IVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPR 325 IVGP+MA QPYG+GINL+NTGLVRFVNGTLERIR DGTWNTLYRKWLTVLGPAPAPPTPR Sbjct 272 IVGPNMATQPYGIGINLNNTGLVRFVNGTLERIRRDGTWNTLYRKWLTVLGPAPAPPTPR 331 Query 326 YVD 328 Y+D Sbjct 332 YLD 334 >gi|254777189|ref|ZP_05218705.1| extracellular solute-binding protein, family protein 3 [Mycobacterium avium subsp. avium ATCC 25291] gi|336460365|gb|EGO39265.1| periplasmic component of amino acid ABC-type transporter/signal transduction system [Mycobacterium avium subsp. paratuberculosis S397] Length=326 Score = 503 bits (1296), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 263/303 (87%), Positives = 285/303 (95%), Gaps = 0/303 (0%) Query 26 CGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAV 85 CGH+E+L V + PTLP PTPVGME +PPQPPLPPD Q+CD TASLRPF TKAEADAAV Sbjct 24 CGHTESLRVASVPTLPPPTPVGMEQLPPQPPLPPDGPDQNCDLTASLRPFPTKAEADAAV 83 Query 86 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAA 145 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGE+ARDIFG PSHVEYRILS+ Sbjct 84 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEIARDIFGAPSHVEYRILSSD 143 Query 146 ERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRV 205 ERVTALQ+ +VD+VVKTM+ITC+RRK VNFSTVYLDANQRILAPRDSPITKVSDLSGKRV Sbjct 144 ERVTALQRGEVDVVVKTMTITCDRRKQVNFSTVYLDANQRILAPRDSPITKVSDLSGKRV 203 Query 206 CVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLH 265 CVA+GTTSL RIR+I PPP++VSVVNWADCLVA+QQREIDAVSTDD+ILAGLVEEDPYLH Sbjct 204 CVAKGTTSLHRIRQIDPPPIVVSVVNWADCLVAMQQREIDAVSTDDSILAGLVEEDPYLH 263 Query 266 IVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPR 325 IVGP+MA QPYG+GINL+NTGLVRFVNGTLERIR DGTWNTLYRKWLTVLGPAPAPPTPR Sbjct 264 IVGPNMATQPYGIGINLNNTGLVRFVNGTLERIRRDGTWNTLYRKWLTVLGPAPAPPTPR 323 Query 326 YVD 328 Y+D Sbjct 324 YLD 326 >gi|342859109|ref|ZP_08715763.1| GlnH [Mycobacterium colombiense CECT 3035] gi|342133350|gb|EGT86553.1| GlnH [Mycobacterium colombiense CECT 3035] Length=325 Score = 488 bits (1256), Expect = 5e-136, Method: Compositional matrix adjust. Identities = 261/303 (87%), Positives = 285/303 (95%), Gaps = 0/303 (0%) Query 26 CGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAV 85 CGH+E+L V + PTLP PTPVGME +PPQPPLPPD +Q+CD TASLRPFATKAEADAAV Sbjct 23 CGHTESLRVASVPTLPPPTPVGMEQLPPQPPLPPDGPNQNCDLTASLRPFATKAEADAAV 82 Query 86 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAA 145 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGE+ARDIFG PSHVEYRILS+ Sbjct 83 ADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEIARDIFGAPSHVEYRILSSD 142 Query 146 ERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRV 205 ERVTALQ+S+VD+VVKTM+ITC+RRK VNFSTVYLDANQRILAPRDS I KVSDLSGKRV Sbjct 143 ERVTALQRSEVDVVVKTMTITCDRRKQVNFSTVYLDANQRILAPRDSSIVKVSDLSGKRV 202 Query 206 CVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLH 265 CVA+GTTSL RI++I PPPV+VSVVNWADCLVA+QQREIDAVSTDD+ILAGLVEEDPYLH Sbjct 203 CVAKGTTSLHRIQQIDPPPVVVSVVNWADCLVAMQQREIDAVSTDDSILAGLVEEDPYLH 262 Query 266 IVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPR 325 IVGP+MA QPYG+G+NL+NTGLVRFVNGTLERIR DGTWNTLYRKWLTVLGPAPAPP PR Sbjct 263 IVGPNMATQPYGIGVNLNNTGLVRFVNGTLERIRRDGTWNTLYRKWLTVLGPAPAPPVPR 322 Query 326 YVD 328 Y+D Sbjct 323 YLD 325 >gi|145220806|ref|YP_001131484.1| extracellular solute-binding protein [Mycobacterium gilvum PYR-GCK] gi|145213292|gb|ABP42696.1| amino acid ABC transporter substrate-binding protein, PAAT family [Mycobacterium gilvum PYR-GCK] Length=324 Score = 482 bits (1240), Expect = 4e-134, Method: Compositional matrix adjust. Identities = 241/330 (74%), Positives = 277/330 (84%), Gaps = 8/330 (2%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPL--PTPVGMEIMPPQPPLP 58 M +RAL AA LA A++L+ C ++ L V TPT+ L PTP G+E +PP P P Sbjct 1 MMKRALRRVGAA----LAAAVMLSGC--AQALPVVPTPTVTLAPPTPAGLEELPPVPARP 54 Query 59 PDSSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGF 118 + DCDP ASLRPFAT+ EADAAVA+I+ARGRLIVGLDIGSNLFSFRDPITGEITGF Sbjct 55 ATPADTDCDPRASLRPFATQEEADAAVANIKARGRLIVGLDIGSNLFSFRDPITGEITGF 114 Query 119 DVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTV 178 DVDIAGE+ARDIFG PS VEYRILS+A+RV AL+ +QVD+VVKTM+ITCER+KLVNFST Sbjct 115 DVDIAGEIARDIFGTPSQVEYRILSSADRVDALRDNQVDVVVKTMTITCERKKLVNFSTA 174 Query 179 YLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVA 238 YL ANQRILAPRDS I + SDLSGKRVCVA+GTTSL RI++I+PPP+IV VV WADCLVA Sbjct 175 YLIANQRILAPRDSNIRQSSDLSGKRVCVAKGTTSLERIQQISPPPLIVGVVTWADCLVA 234 Query 239 LQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERI 298 LQQR++DAVSTDD ILAGLV +DPYLHIVGP M ++PYG+G+NL NTGLVR+VNGTL+RI Sbjct 235 LQQRQVDAVSTDDAILAGLVSQDPYLHIVGPSMNEEPYGIGVNLQNTGLVRYVNGTLQRI 294 Query 299 RNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 R DGTWNTLYRKWLTVLGPAPAPP RY D Sbjct 295 RRDGTWNTLYRKWLTVLGPAPAPPVARYTD 324 >gi|315442241|ref|YP_004075120.1| amino acid ABC transporter substrate-binding protein, PAAT family [Mycobacterium sp. Spyr1] gi|315260544|gb|ADT97285.1| amino acid ABC transporter substrate-binding protein, PAAT family [Mycobacterium sp. Spyr1] Length=323 Score = 480 bits (1236), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 236/316 (75%), Positives = 271/316 (86%), Gaps = 4/316 (1%) Query 15 APLALAMVLASCGHSETLGVEATPTLPL--PTPVGMEIMPPQPPLPPDSSSQDCDPTASL 72 A LA A++L+ C ++ L V TPT+ L PTP G+E +PP P P + DCDP ASL Sbjct 10 AALAAAVMLSGC--AQALPVVPTPTVTLAPPTPAGLEELPPVPARPATPADTDCDPRASL 67 Query 73 RPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFG 132 RPFAT+ EADAAVA+I+ARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGE+ARDIFG Sbjct 68 RPFATQEEADAAVANIKARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEIARDIFG 127 Query 133 VPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDS 192 PS VEYRILS+A+RV AL+ +QVD+VVKTM+ITCER+KLVNFST YL ANQRILAPRDS Sbjct 128 TPSQVEYRILSSADRVDALRDNQVDVVVKTMTITCERKKLVNFSTAYLIANQRILAPRDS 187 Query 193 PITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDT 252 I + SDLSGKRVCVA+GTTSL RI++I+PPP+IV VV WADCLVALQQR++DAVSTDD Sbjct 188 NIRQSSDLSGKRVCVAKGTTSLERIQQISPPPLIVGVVTWADCLVALQQRQVDAVSTDDA 247 Query 253 ILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWL 312 ILAGLV +DPYLHIVGP M ++PYG+G+NL NTGLVR+VNGTL+RIR DGTWNTLYRKWL Sbjct 248 ILAGLVSQDPYLHIVGPSMNEEPYGIGVNLQNTGLVRYVNGTLQRIRRDGTWNTLYRKWL 307 Query 313 TVLGPAPAPPTPRYVD 328 TVLGPAPAPP RY D Sbjct 308 TVLGPAPAPPVARYTD 323 >gi|333989022|ref|YP_004521636.1| glutamine-binding lipoprotein GlnH [Mycobacterium sp. JDM601] gi|333484990|gb|AEF34382.1| glutamine-binding lipoprotein GlnH [Mycobacterium sp. JDM601] Length=317 Score = 478 bits (1231), Expect = 5e-133, Method: Compositional matrix adjust. Identities = 239/306 (79%), Positives = 267/306 (88%), Gaps = 1/306 (0%) Query 23 LASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEAD 82 L CG +E + A PTLP PTP GM+ +PP+PP +++CD TASL PF +KAEAD Sbjct 13 LTGCGRTEFVMPTAVPTLPPPTPAGMQELPPEPPRQ-PEPAENCDATASLHPFRSKAEAD 71 Query 83 AAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRIL 142 AAVA IR RGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFG PS VEYRIL Sbjct 72 AAVAKIRHRGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGTPSQVEYRIL 131 Query 143 SAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSG 202 ++AER+ ALQKS+VDIVVKTMSITC RRKLVNFSTVYL ANQR+L PRDS I + DLSG Sbjct 132 ASAERIEALQKSEVDIVVKTMSITCGRRKLVNFSTVYLVANQRLLVPRDSSIRQAGDLSG 191 Query 203 KRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDP 262 +RVCVA+GTTSLRRIR+I+P P+IVSVVNWADCLVALQQR++DAVSTDD+ILAGL+ +DP Sbjct 192 RRVCVAQGTTSLRRIRQISPAPIIVSVVNWADCLVALQQRQVDAVSTDDSILAGLMSQDP 251 Query 263 YLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPP 322 YLHIVGP M ++PYG+GINLDNTGLVRFVNGTLERIR DGTWNTLYRKWLTVLGPAP PP Sbjct 252 YLHIVGPSMDEEPYGIGINLDNTGLVRFVNGTLERIRRDGTWNTLYRKWLTVLGPAPLPP 311 Query 323 TPRYVD 328 TPRY D Sbjct 312 TPRYSD 317 >gi|120401719|ref|YP_951548.1| extracellular solute-binding protein [Mycobacterium vanbaalenii PYR-1] gi|119954537|gb|ABM11542.1| amino acid ABC transporter substrate-binding protein, PAAT family [Mycobacterium vanbaalenii PYR-1] Length=332 Score = 471 bits (1213), Expect = 5e-131, Method: Compositional matrix adjust. Identities = 235/326 (73%), Positives = 272/326 (84%), Gaps = 0/326 (0%) Query 3 RRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSS 62 ++ L + +A A LA +VL C + + + TL PTP G+E MPP+P P ++ Sbjct 7 KKQPLMKVSAWGALLAGVLVLGGCAQTSPVVPTPSVTLAPPTPAGLEEMPPEPARAPTAA 66 Query 63 SQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDI 122 DCDP ASLRPF K +AD AVA+I+ARGRLIVGLDIGSNLFSFRDPITGEITGFDVDI Sbjct 67 DDDCDPLASLRPFDNKEDADKAVANIKARGRLIVGLDIGSNLFSFRDPITGEITGFDVDI 126 Query 123 AGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDA 182 AGE+ARDIFG PS VEYRILS+A+RV ALQK+QVD+VVKTM+ITCER+KLVNFST YL A Sbjct 127 AGEIARDIFGTPSQVEYRILSSADRVEALQKNQVDVVVKTMTITCERKKLVNFSTAYLSA 186 Query 183 NQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQR 242 NQRILAPRDS I + SDLSGKRVCVA+GTTSL RI++I PPP+IV VV WADCLVALQQR Sbjct 187 NQRILAPRDSNIRQSSDLSGKRVCVAKGTTSLERIQQITPPPIIVGVVTWADCLVALQQR 246 Query 243 EIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDG 302 ++DAVSTDD+ILAGLV +DPYLHIVGP M ++PYG+G+NL+NTGLVRFVNGTL+RIR DG Sbjct 247 QVDAVSTDDSILAGLVSQDPYLHIVGPSMNEEPYGIGVNLENTGLVRFVNGTLQRIRRDG 306 Query 303 TWNTLYRKWLTVLGPAPAPPTPRYVD 328 TWNTLYRKWLTVLGPAPAPP RY D Sbjct 307 TWNTLYRKWLTVLGPAPAPPAARYSD 332 >gi|126433143|ref|YP_001068834.1| extracellular solute-binding protein [Mycobacterium sp. JLS] gi|126232943|gb|ABN96343.1| amino acid ABC transporter substrate-binding protein, PAAT family [Mycobacterium sp. JLS] Length=331 Score = 470 bits (1210), Expect = 1e-130, Method: Compositional matrix adjust. Identities = 228/327 (70%), Positives = 272/327 (84%), Gaps = 2/327 (0%) Query 2 TRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDS 61 R++++ R A L+ A +VLA CG + ++ TL PTP GME +PP+ P Sbjct 7 NRQSVMKRLLALLS--ATVLVLAGCGQAASVVPTPGVTLAPPTPAGMEELPPEQARLPIP 64 Query 62 SSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVD 121 + DC+ ASLRPF T+AEADAAVA IR RGRLIVGLDIGSNLFSFRDPITG+ITGFDVD Sbjct 65 ETDDCNRRASLRPFPTRAEADAAVAYIRERGRLIVGLDIGSNLFSFRDPITGDITGFDVD 124 Query 122 IAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLD 181 IAGE+ARDIFG P+ V+YRILS+A+R+ ALQ +QVD+VVKTM+ITCER+K V FSTVYL+ Sbjct 125 IAGEIARDIFGSPAQVDYRILSSADRIVALQNNQVDVVVKTMTITCERKKKVGFSTVYLN 184 Query 182 ANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQ 241 A+QRILAPRDS IT+ +DLSG+RVCV +GTTSLRR+++I+PPP+IVS V WADCLVALQQ Sbjct 185 ADQRILAPRDSAITRAADLSGRRVCVVKGTTSLRRVQQISPPPIIVSTVTWADCLVALQQ 244 Query 242 REIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRND 301 R++DAVSTDD ILAGLV +DPYLHIVGP M +PYG+G+NL+NTGLVRFVNGTL+RIRND Sbjct 245 RQVDAVSTDDAILAGLVAQDPYLHIVGPSMNQEPYGIGVNLENTGLVRFVNGTLQRIRND 304 Query 302 GTWNTLYRKWLTVLGPAPAPPTPRYVD 328 GTW LYRKWLTVLGPAPAPP RYVD Sbjct 305 GTWYALYRKWLTVLGPAPAPPVARYVD 331 >gi|118468998|ref|YP_885192.1| extracellular solute-binding protein, family protein 3 [Mycobacterium smegmatis str. MC2 155] gi|118170285|gb|ABK71181.1| Bacterial extracellular solute-binding protein, family protein 3 [Mycobacterium smegmatis str. MC2 155] Length=322 Score = 470 bits (1209), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 228/309 (74%), Positives = 263/309 (86%), Gaps = 0/309 (0%) Query 20 AMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKA 79 AM L C + + TL PTP GME +PPQP P+ + DC+ TASLRPF+ K Sbjct 14 AMSLVGCSQAAPALNLPSLTLAPPTPAGMEEIPPQPVRLPEIDNDDCNRTASLRPFSNKE 73 Query 80 EADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEY 139 EA+AAVA+IRARGRLIVGLDIGSNLFSFRDPITG+ITGFDVDIAGEV+RDIFG PS VEY Sbjct 74 EAEAAVANIRARGRLIVGLDIGSNLFSFRDPITGQITGFDVDIAGEVSRDIFGTPSKVEY 133 Query 140 RILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSD 199 RILS+A+R+TAL+ +QVDIVVKTM+ITCER+KLVNFSTVYL ANQRILA RDS I++ SD Sbjct 134 RILSSADRITALRNNQVDIVVKTMTITCERKKLVNFSTVYLMANQRILASRDSNISQASD 193 Query 200 LSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVE 259 LSG+RVCV GTTSL+RI++I+P P+IVSVV WADCLVALQQR+ DAVSTDD+ILAGLV Sbjct 194 LSGRRVCVVDGTTSLQRIQQISPSPIIVSVVTWADCLVALQQRQADAVSTDDSILAGLVA 253 Query 260 EDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAP 319 +DPYLHIVGP ++ +PYG+G+NL+NTGLVR VNGTLERIR DGTW TLYRKWLTVLGPAP Sbjct 254 QDPYLHIVGPSLSQEPYGIGVNLENTGLVRVVNGTLERIRRDGTWYTLYRKWLTVLGPAP 313 Query 320 APPTPRYVD 328 APP RYVD Sbjct 314 APPVARYVD 322 >gi|108797521|ref|YP_637718.1| extracellular solute-binding protein [Mycobacterium sp. MCS] gi|119866607|ref|YP_936559.1| extracellular solute-binding protein [Mycobacterium sp. KMS] gi|108767940|gb|ABG06662.1| amino acid ABC transporter substrate-binding protein, PAAT family [Mycobacterium sp. MCS] gi|119692696|gb|ABL89769.1| amino acid ABC transporter substrate-binding protein, PAAT family [Mycobacterium sp. KMS] Length=331 Score = 468 bits (1203), Expect = 7e-130, Method: Compositional matrix adjust. Identities = 227/327 (70%), Positives = 271/327 (83%), Gaps = 2/327 (0%) Query 2 TRRALLARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDS 61 R+ ++ R A L+ A +VLA CG + ++ TL PTP GME +PP+ P Sbjct 7 NRQRVMKRLLALLS--ATVLVLAGCGQAASVVPTPGVTLAPPTPAGMEELPPEQARLPIP 64 Query 62 SSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVD 121 + DC+ ASLRPF T+AEADAAVA IR RGRLIVGLDIGSNLFSFRDPITG+ITGFDVD Sbjct 65 ETDDCNRRASLRPFPTRAEADAAVAYIRERGRLIVGLDIGSNLFSFRDPITGDITGFDVD 124 Query 122 IAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLD 181 IAGE+ARDIFG P+ V+YRILS+A+R+ ALQ +QVD+VVK+M+ITCER+K V FSTVYL+ Sbjct 125 IAGEIARDIFGSPAQVDYRILSSADRIVALQNNQVDVVVKSMTITCERKKKVGFSTVYLN 184 Query 182 ANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQ 241 A+QRILAPRDS IT+ +DLSG+RVCV +GTTSLRR+++I+PPP+IVS V WADCLVALQQ Sbjct 185 ADQRILAPRDSAITRAADLSGRRVCVVKGTTSLRRVQQISPPPIIVSTVTWADCLVALQQ 244 Query 242 REIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRND 301 R++DAVSTDD ILAGLV +DPYLHIVGP M +PYG+G+NL+NTGLVRFVNGTL+RIRND Sbjct 245 RQVDAVSTDDAILAGLVAQDPYLHIVGPSMNQEPYGIGVNLENTGLVRFVNGTLQRIRND 304 Query 302 GTWNTLYRKWLTVLGPAPAPPTPRYVD 328 GTW LYRKWLTVLGPAPAPP RYVD Sbjct 305 GTWYALYRKWLTVLGPAPAPPVARYVD 331 >gi|169631301|ref|YP_001704950.1| glutamine-binding protein GlnH [Mycobacterium abscessus ATCC 19977] gi|169243268|emb|CAM64296.1| Probable glutamine-binding protein GlnH [Mycobacterium abscessus] Length=327 Score = 421 bits (1083), Expect = 6e-116, Method: Compositional matrix adjust. Identities = 205/290 (71%), Positives = 236/290 (82%), Gaps = 1/290 (0%) Query 39 TLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGL 98 T+P PTP M P + D CDPTASLRP + +A D AVA IR RGRL+VGL Sbjct 39 TVPRPTPAEMTEQEPNRAVL-DKIDTSCDPTASLRPTSDRAANDEAVAAIRKRGRLVVGL 97 Query 99 DIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDI 158 DIGSNLFSFRDPITGE+TGFDVDIAGEV+RDIFG P VEYRILS+A+RV AL+ S VDI Sbjct 98 DIGSNLFSFRDPITGELTGFDVDIAGEVSRDIFGTPERVEYRILSSADRVAALKNSTVDI 157 Query 159 VVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIR 218 VVKTM+ITC RRK VNFS+VYL QRIL RDS IT DLSG+RVC ARGTTSL R+ Sbjct 158 VVKTMTITCARRKEVNFSSVYLMNYQRILTSRDSGITNAQDLSGRRVCAARGTTSLNRLS 217 Query 219 EIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGV 278 +I PPPVI+SVV WADCLVALQQR++DAVSTDD+ILAGL+ +DPYLHI+GP+M+D+PYG+ Sbjct 218 QITPPPVIMSVVTWADCLVALQQRQVDAVSTDDSILAGLMSQDPYLHIIGPNMSDEPYGI 277 Query 279 GINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 GI L+NT LVR+VN TLERIR DGTWN LYRKWL+VLGPAPAPP+ +Y D Sbjct 278 GIKLENTDLVRYVNRTLERIRRDGTWNALYRKWLSVLGPAPAPPSAKYRD 327 >gi|226361323|ref|YP_002779101.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226239808|dbj|BAH50156.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=324 Score = 341 bits (875), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 168/275 (62%), Positives = 205/275 (75%), Gaps = 5/275 (1%) Query 55 PPLPPDSSSQDC-DPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITG 113 PP P + DC DPTASLRPF V IRARGRL+VGLD GSNL SFRDP TG Sbjct 54 PPAP----ANDCGDPTASLRPFPDTGTPMPTVDAIRARGRLVVGLDTGSNLMSFRDPATG 109 Query 114 EITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLV 173 I GFDVD+A E++RD+FG P ++YRIL++A R ALQ+S VDIV KTM+ITC+R++ V Sbjct 110 AIEGFDVDVAREISRDLFGDPDRLDYRILTSANREKALQESMVDIVAKTMTITCDRKERV 169 Query 174 NFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWA 233 FS+ Y +A QR+L + SPI +DL GKRVCV RGTTSL R++++AP I++V W+ Sbjct 170 AFSSEYFEAQQRVLVVKGSPIRSAADLDGKRVCVVRGTTSLTRLQQVAPTAEILTVPMWS 229 Query 234 DCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNG 293 DCLV LQQR++DAVSTDDTILAGL +DPYL IVG M +PYGVGI N LVRFVNG Sbjct 230 DCLVVLQQRQVDAVSTDDTILAGLASQDPYLEIVGDSMGAEPYGVGITKANEDLVRFVNG 289 Query 294 TLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 TLERIR+DGTW +Y +WL+VLGP+PAPP+ Y D Sbjct 290 TLERIRSDGTWTRMYDRWLSVLGPSPAPPSAVYQD 324 >gi|289748896|ref|ZP_06508274.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis T92] gi|289689483|gb|EFD56912.1| glutamine-binding lipoprotein glnH [Mycobacterium tuberculosis T92] Length=173 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 166/173 (96%), Positives = 169/173 (98%), Gaps = 0/173 (0%) Query 156 VDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLR 215 + I V+ SITCERRK+VNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLR Sbjct 1 MKIGVRGFSITCERRKVVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLR 60 Query 216 RIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQP 275 RIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQP Sbjct 61 RIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQP 120 Query 276 YGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 YGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD Sbjct 121 YGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 173 >gi|111019187|ref|YP_702159.1| amino acid ABC transporter ATP-binding protein [Rhodococcus jostii RHA1] gi|110818717|gb|ABG94001.1| probable ABC amino acid transporter, binding component [Rhodococcus jostii RHA1] Length=326 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 172/280 (62%), Positives = 207/280 (74%), Gaps = 13/280 (4%) Query 55 PPLPPDSSSQDC-DPTASLRPFATKAEADAA-----VADIRARGRLIVGLDIGSNLFSFR 108 PP P +DC DPTASLRPF + DAA V IRARGRL+VGLD GSNL SFR Sbjct 54 PPTP----EKDCGDPTASLRPFP---DTDAAPPMPTVDAIRARGRLVVGLDTGSNLMSFR 106 Query 109 DPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCE 168 DP TG + GFDVDIA E+ARD+FG P +EYRIL++A R ALQ+S VDIV KTM+ITC+ Sbjct 107 DPATGAVQGFDVDIAREIARDLFGDPDRLEYRILTSANREKALQESMVDIVAKTMTITCD 166 Query 169 RRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVS 228 R++ V FS+ Y +A QR+L + SPI +DL GKRVCV RGTTSL R++++AP I++ Sbjct 167 RKERVAFSSEYFEAQQRVLVVKGSPIRSAADLDGKRVCVVRGTTSLTRLQQVAPTADILT 226 Query 229 VVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLV 288 V W+DCLV LQQR++DAVSTDDTILAGL +DPYL IVG M +PYGVGI N LV Sbjct 227 VPMWSDCLVVLQQRQVDAVSTDDTILAGLASQDPYLEIVGDSMGAEPYGVGITKANEDLV 286 Query 289 RFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 RFVNGTLERIR DGTW +Y WL++LGP+PAPP+ Y D Sbjct 287 RFVNGTLERIRRDGTWTRMYDHWLSMLGPSPAPPSAVYQD 326 >gi|226304964|ref|YP_002764922.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis PR4] gi|226184079|dbj|BAH32183.1| putative ABC transporter substrate-binding protein [Rhodococcus erythropolis PR4] Length=334 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 179/331 (55%), Positives = 224/331 (68%), Gaps = 9/331 (2%) Query 3 RRALLARAAAPLAPLALAMVLASCG--HSETLGVEATPTLPLPTPVGMEIMPPQPPLPPD 60 RR L A A LA LA LA CG +E L A + P + P P P Sbjct 8 RRKLPAVCVAVLAASVLA--LAGCGADRAEDLNNAAATSYTEPPLPAEATIAPSPT--PT 63 Query 61 SSSQDCDPTASLRPFATKAEADA---AVADIRARGRLIVGLDIGSNLFSFRDPITGEITG 117 +++ + TASLRP A ++ IRARGRLIVGLD GSNL SFRDP TG + G Sbjct 64 TTASCTNLTASLRPTPADASPQPPTPSLDAIRARGRLIVGLDTGSNLMSFRDPATGRLEG 123 Query 118 FDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFST 177 FDVDIA E+ARD+ G P +EYRIL++ +R+ ALQ+S VD+VVKTM+ITCERR+ V+FST Sbjct 124 FDVDIAREIARDLLGDPEKIEYRILTSDDRIAALQESMVDVVVKTMTITCERREKVDFST 183 Query 178 VYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLV 237 Y A QRI + SP+ ++DL+GKRVC ARGTTS RI+E+ P +V+V W+DCLV Sbjct 184 QYFSAEQRIQVLQGSPVRGIADLAGKRVCAARGTTSATRIQELQPEATVVTVPMWSDCLV 243 Query 238 ALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLER 297 LQQ ++DA+STDDTILAGL +DPYL +VG + +PYG+G+N DN LVRFVNGTLER Sbjct 244 VLQQGQVDAISTDDTILAGLASQDPYLMMVGGSLGVEPYGIGVNKDNPDLVRFVNGTLER 303 Query 298 IRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 IR DGTWN +Y +WL+VLGP+P PP Y D Sbjct 304 IRGDGTWNRIYDRWLSVLGPSPGPPPAVYRD 334 >gi|333918207|ref|YP_004491788.1| putative ABC transporter substrate-binding protein [Amycolicicoccus subflavus DQS3-9A1] gi|333480428|gb|AEF38988.1| Putative ABC transporter substrate-binding protein [Amycolicicoccus subflavus DQS3-9A1] Length=331 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 191/330 (58%), Positives = 233/330 (71%), Gaps = 12/330 (3%) Query 8 ARAAAPLAPLALAMVLASCGHS---ETLGVEAT-PTLPLPTPVGMEIMPPQPPLPPDSSS 63 +R A LA L LA V+A G + GV T P++P+P+ G EI+P QP S Sbjct 5 SRRMASLAGLGLAAVVALSGCALPDPAPGVPQTYPSMPMPS--GAEIVP-QPDEVEPPPS 61 Query 64 QDCDPTASLRPFA-----TKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGF 118 +CDPTASLRP + + V++I RGRLIVGLD GSNLFSFRDP+TG++ GF Sbjct 62 LECDPTASLRPTEPNPPPGEIRPENPVSEIYERGRLIVGLDAGSNLFSFRDPLTGDLVGF 121 Query 119 DVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTV 178 DVDIA E+ARDIFG P VE+ IL++AER+TAL+ SQVD+VVKTM+ITCERR+ V FST Sbjct 122 DVDIAREIARDIFGDPDRVEFEILTSAERLTALENSQVDVVVKTMTITCERRERVEFSTS 181 Query 179 YLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVA 238 Y A QRIL S I DL+ + VCV RGTTSL RI+ + P I+ V WADCLVA Sbjct 182 YFQAYQRILTVSGSGINSAEDLADRTVCVVRGTTSLARIQRLQPAATILGVPAWADCLVA 241 Query 239 LQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERI 298 LQQ + DA+STDD+ILAGL +DPYL IVG ++ +PYGVGIN++N LVRFVN TLERI Sbjct 242 LQQGQADAISTDDSILAGLNAQDPYLEIVGGFLSSEPYGVGININNQDLVRFVNNTLERI 301 Query 299 RNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 R DGTWN LY+ WL+VLGP+P PP PRY D Sbjct 302 RTDGTWNRLYQGWLSVLGPSPGPPPPRYGD 331 >gi|229493071|ref|ZP_04386866.1| bacterial extracellular solute-binding protein, family 3 [Rhodococcus erythropolis SK121] gi|229320101|gb|EEN85927.1| bacterial extracellular solute-binding protein, family 3 [Rhodococcus erythropolis SK121] Length=328 Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 169/315 (54%), Positives = 216/315 (69%), Gaps = 11/315 (3%) Query 21 MVLASCGHSETLGVE---ATPTLPLPTPVGMEIMPPQPPLPPDSSSQDC-DPTASLRPFA 76 +VLA CG ++ AT P P I P P +++ C + TASLRP Sbjct 18 LVLAGCGADRAEDLDNAGATSYTEPPLPAEATIAPSPTP----TTTASCTNLTASLRPTP 73 Query 77 TKAEADA---AVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGV 133 A ++ IRARGRLIVGLD GSNL SFRDP TG + GFDVDIA E+ARD+ G Sbjct 74 ADASPQPPTPSLDAIRARGRLIVGLDTGSNLMSFRDPATGRLEGFDVDIAREIARDLLGD 133 Query 134 PSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSP 193 P +EYRIL++ +R+ ALQ+S VD+VVKTM+ITCERR+ V+FST Y A QRI + S Sbjct 134 PEKIEYRILTSDDRIAALQESMVDVVVKTMTITCERREKVDFSTQYFSAEQRIQVLQGSS 193 Query 194 ITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTI 253 + + DL+GKRVC ARGTTS RI+++ P +V+V W+DCLV LQQ ++DA+STDDTI Sbjct 194 VRGIDDLAGKRVCAARGTTSATRIQQLQPEATVVTVPMWSDCLVVLQQGQVDAISTDDTI 253 Query 254 LAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLT 313 LAGL +DPYL +VG + +PYG+G+N DN LVRFVNGTL+RIR+DGTWN +Y +WL+ Sbjct 254 LAGLASQDPYLMMVGGSLGVEPYGIGVNKDNPDLVRFVNGTLDRIRSDGTWNRIYDRWLS 313 Query 314 VLGPAPAPPTPRYVD 328 VLGP+P PP Y D Sbjct 314 VLGPSPGPPPAVYRD 328 >gi|54027317|ref|YP_121559.1| putative transporter substrate-binding protein [Nocardia farcinica IFM 10152] gi|54018825|dbj|BAD60195.1| putative transporter substrate-binding protein [Nocardia farcinica IFM 10152] Length=323 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 167/286 (59%), Positives = 208/286 (73%), Gaps = 2/286 (0%) Query 43 PTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGS 102 P P G ++PP+ PLP + DPTASLRP T A + IR RGRL+VGLD GS Sbjct 40 PLPAGATVLPPESPLPAQPEADCGDPTASLRP--TGATTGPTLDAIRRRGRLLVGLDTGS 97 Query 103 NLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKT 162 NLFSFRDPITG + GFD DIA E+ARD+ G P +E+R + +A+R ALQ VD+V KT Sbjct 98 NLFSFRDPITGAVVGFDADIAREIARDLLGSPDLIEFRSMGSADREQALQDRTVDLVAKT 157 Query 163 MSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAP 222 M+ITCERR+ V FSTVYL A+QR+LA +DS I ++DL+GKRVCV RGTTSL +R P Sbjct 158 MTITCERRRKVAFSTVYLRADQRVLAMKDSGIRGLADLAGKRVCVVRGTTSLEHVRREQP 217 Query 223 PPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINL 282 +++V +WADCLV LQQR++DAVSTDD ILAGL +DPY +VG ++ +PYG+GI Sbjct 218 AATVLTVPSWADCLVVLQQRQVDAVSTDDAILAGLAAQDPYTEVVGESISVEPYGIGIPR 277 Query 283 DNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 + LVRFVN TLER+R+DGTW LYR+WL+VLGPAPAPP Y D Sbjct 278 EADDLVRFVNRTLERLRSDGTWTRLYRQWLSVLGPAPAPPAATYQD 323 >gi|111020580|ref|YP_703552.1| glutamate binding protein solute binding protein family [Rhodococcus jostii RHA1] gi|110820110|gb|ABG95394.1| probable glutamate binding protein, bacterial solute binding protein family protein [Rhodococcus jostii RHA1] Length=336 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 161/290 (56%), Positives = 205/290 (71%), Gaps = 3/290 (1%) Query 42 LPTPVGMEIMPPQPPLPPDSSSQD-CDPTASLRPFATK--AEADAAVADIRARGRLIVGL 98 +P G EI+ P +P + + D C ASLRP AT +++A+I ARGRLIVG+ Sbjct 47 VPLTSGAEILLPTGDVPEEPPAPDSCGALASLRPAATPDVRAPGSSLAEITARGRLIVGI 106 Query 99 DIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDI 158 D +NLFSFRDP TG + GFDVD+AGE+ARD+FG PS VE+R+L++ +R ALQ VD+ Sbjct 107 DQNTNLFSFRDPTTGMLMGFDVDVAGEMARDLFGDPSRVEFRLLTSGDRFDALQNEDVDL 166 Query 159 VVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIR 218 VVK+ SITCER + V FSTVY A QR+L P+ S I+ +DL+GKRVC A TTSL +R Sbjct 167 VVKSTSITCERSERVAFSTVYFQAYQRLLVPKGSGISGPADLAGKRVCTAGDTTSLDTVR 226 Query 219 EIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGV 278 + P IV+V +W DCLV LQQR+ DA STDD+ILAGL +DP L IVGP + +PYG+ Sbjct 227 RVQPEATIVAVPDWDDCLVVLQQRQADAASTDDSILAGLAAQDPNLEIVGPPLESEPYGI 286 Query 279 GINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 G+N ++ LVRFVNGTL+R+R DGTW LY WLTVLGP+ PP P Y D Sbjct 287 GVNKNHDDLVRFVNGTLDRMRADGTWTRLYDNWLTVLGPSAGPPAPTYRD 336 >gi|226362801|ref|YP_002780579.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226241286|dbj|BAH51634.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=336 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 159/289 (56%), Positives = 201/289 (70%), Gaps = 3/289 (1%) Query 43 PTPVGMEIMPPQPPLPPDSSSQD-CDPTASLRPF-ATKAEA-DAAVADIRARGRLIVGLD 99 P G++I PP +P + + D C ASLRP A A +A+A+I ARGRL+VG+D Sbjct 48 PLTNGLQIHPPTGDVPGEPPAPDSCGALASLRPVTAPDVRAPGSALAEITARGRLVVGID 107 Query 100 IGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIV 159 +NLFSFRDP TG + GFDVD+AGE+ARD+FG P+ VE+R+L++ +R AL+K VD+V Sbjct 108 QNTNLFSFRDPTTGMLMGFDVDVAGEMARDLFGDPARVEFRLLTSGDRFDALEKKAVDLV 167 Query 160 VKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIRE 219 VK+ +ITCER + V FSTVY A QR+L P+ S I+ DL+GKRVC TTSL +R Sbjct 168 VKSTTITCERSERVAFSTVYFQAYQRLLVPKVSGISGPEDLAGKRVCTVADTTSLDTVRR 227 Query 220 IAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVG 279 + P IV+V +W DCLV LQQR DA STDD+ILAGL +DP L IVGP + +PYG+G Sbjct 228 VQPAATIVTVPDWDDCLVTLQQRRADAASTDDSILAGLAAQDPNLEIVGPPLHSEPYGIG 287 Query 280 INLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 +N N LVRFVNGTL+R+R DGTW LY WLTVLGP PPT Y D Sbjct 288 VNKGNEDLVRFVNGTLDRMRADGTWMRLYDSWLTVLGPVTGPPTATYRD 336 >gi|312141243|ref|YP_004008579.1| high affinity substrate-binding lipoprotein [Rhodococcus equi 103S] gi|311890582|emb|CBH49900.1| putative high affinity substrate binding lipoprotein [Rhodococcus equi 103S] Length=327 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/253 (61%), Positives = 186/253 (74%), Gaps = 1/253 (0%) Query 64 QDCDPTASLRPFATKAEADAAVAD-IRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDI 122 Q DPTASLRPF D+A D IR RGRL+VGLD GSNL SFR+P T EI GFDVDI Sbjct 62 QCGDPTASLRPFPAGQIPDSASLDAIRQRGRLVVGLDTGSNLLSFRNPTTDEIEGFDVDI 121 Query 123 AGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDA 182 A E+ARD+ G P VE+R+L+ AER AL+ +VDIV KTM+ITCERR+ ++FSTVY DA Sbjct 122 AREIARDLLGSPDKVEFRVLNYAEREQALEDGRVDIVAKTMAITCERRQRIDFSTVYYDA 181 Query 183 NQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQR 242 +QRIL SP+ VSDL+G+RVCV GTTSL RI P +V+V W+DCLV LQQ Sbjct 182 HQRILVMAGSPVRDVSDLAGRRVCVGEGTTSLERIERQQPDAAVVTVPMWSDCLVMLQQN 241 Query 243 EIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDG 302 ++DA+STDDT+L GL +DP+ IVGP+M D+ YG+G+ N LVRFVNGTLERIR DG Sbjct 242 QVDAISTDDTLLLGLATQDPHSRIVGPNMGDERYGIGVAQGNEDLVRFVNGTLERIRRDG 301 Query 303 TWNTLYRKWLTVL 315 TW +Y +WL+ L Sbjct 302 TWEKIYDRWLSEL 314 >gi|325673926|ref|ZP_08153616.1| glutamine ABC superfamily ATP binding cassette transporter, binding protein [Rhodococcus equi ATCC 33707] gi|325555191|gb|EGD24863.1| glutamine ABC superfamily ATP binding cassette transporter, binding protein [Rhodococcus equi ATCC 33707] Length=327 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 151/253 (60%), Positives = 186/253 (74%), Gaps = 1/253 (0%) Query 64 QDCDPTASLRPFATKAEADAAVAD-IRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDI 122 Q DPTASLRPF D+A D IR RGRL+VGLD GSNL SFR+P T EI GFDVDI Sbjct 62 QCGDPTASLRPFPAGQIPDSASLDAIRQRGRLVVGLDTGSNLLSFRNPTTDEIEGFDVDI 121 Query 123 AGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDA 182 A E+ARD+ G P VE+R+L+ AER AL+ +VDIV KTM+ITCERR+ ++FSTVY DA Sbjct 122 AREIARDLLGSPDKVEFRVLNYAEREQALEDGRVDIVAKTMAITCERRQRIDFSTVYYDA 181 Query 183 NQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQR 242 +QRIL SP+ VSDL+G+RVCV GTTSL R+ P +V+V W+DCLV LQQ Sbjct 182 HQRILVMAGSPVRDVSDLAGRRVCVGEGTTSLERVERQQPDAAVVTVPMWSDCLVMLQQN 241 Query 243 EIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDG 302 ++DA+STDDT+L GL +DP+ IVGP+M D+ YG+G+ N LVRFVNGTLERIR DG Sbjct 242 QVDAISTDDTLLLGLATQDPHSRIVGPNMGDERYGIGVAQGNEDLVRFVNGTLERIRRDG 301 Query 303 TWNTLYRKWLTVL 315 TW +Y +WL+ L Sbjct 302 TWEKIYDRWLSEL 314 >gi|262204220|ref|YP_003275428.1| extracellular solute-binding protein family 3 protein [Gordonia bronchialis DSM 43247] gi|262087567|gb|ACY23535.1| extracellular solute-binding protein family 3 [Gordonia bronchialis DSM 43247] Length=340 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 153/276 (56%), Positives = 198/276 (72%), Gaps = 7/276 (2%) Query 58 PPDSSSQDCDPTASLRPFAT-----KAEADAAVADIRARGRLIVGLDIGSNLFSFRDPIT 112 PP++ +DCD T SLRP A + +ADI A GRLIVGLDIGSNLFSFRDP+T Sbjct 67 PPNA--EDCDATRSLRPPAQMPAPGRMPPRTTMADIVAHGRLIVGLDIGSNLFSFRDPMT 124 Query 113 GEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKL 172 G+I GFDVD++ E+ R IFG P VE+R+LS+AERV AL+ VD+VVKTMSITC+R + Sbjct 125 GDIRGFDVDLSREITRAIFGDPGRVEFRVLSSAERVEALRTGAVDVVVKTMSITCDRLRD 184 Query 173 VNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNW 232 ++FS Y A+QRILA ++S IT + L+GKRVC ARG TS+ RI+ IAP +V+ W Sbjct 185 ISFSAPYYVASQRILAVQNSAITGPAQLAGKRVCSARGATSIGRIQSIAPQARMVTTTTW 244 Query 233 ADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVN 292 ADCLV LQQ ++DAV+TDD ILAGL E+DP++ +VGP + ++ YGVGI +VRF+N Sbjct 245 ADCLVLLQQGQVDAVTTDDAILAGLAEQDPWVRVVGPSLGEEYYGVGIPPGRDDMVRFIN 304 Query 293 GTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 G LERIR+DGTW +Y +WL++L PP Y D Sbjct 305 GVLERIRSDGTWWRMYNQWLSILDSGYGPPLVTYRD 340 >gi|319948590|ref|ZP_08022716.1| glutamine-binding protein GlnH [Dietzia cinnamea P4] gi|319437740|gb|EFV92734.1| glutamine-binding protein GlnH [Dietzia cinnamea P4] Length=359 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 156/292 (54%), Positives = 196/292 (68%), Gaps = 7/292 (2%) Query 42 LPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIG 101 +P P G + P P ++CDP SLRP A + V I RGRLIVGLD G Sbjct 67 MPLPAGAVVSTDIPDNLPREDDENCDPLPSLRP--DDAPPEERVPRILQRGRLIVGLDQG 124 Query 102 SNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVK 161 SNLFSFRDP +G++TGFDVD+A E+A DIFG P VE+R L++A R+ AL+ QVD+V++ Sbjct 125 SNLFSFRDPASGQLTGFDVDLAREIAADIFGDPRQVEFRSLTSANRLEALENDQVDVVIR 184 Query 162 TMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIA 221 +MSITC RR+ V FS Y A QR+L R S IT++ L GKRVCVA GTTS R+ Sbjct 185 SMSITCARRERVTFSVPYYQAYQRVLTVRGSGITEIEHLEGKRVCVAAGTTSASRLWAEL 244 Query 222 PPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGIN 281 ++SV WADCLVA+QQ ++DA++TDD IL G+ +DPYL IVGP + +PYGVGI Sbjct 245 ERITVLSVNTWADCLVAIQQNQVDAITTDDAILVGITAQDPYLQIVGPQLDAEPYGVGIA 304 Query 282 L----DNT-GLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 +NT GLVR VN TLERIR DGTWN +Y WL+ LGP P P PRY++ Sbjct 305 KSTPENNTDGLVRQVNSTLERIRADGTWNRMYSTWLSGLGPNPGMPEPRYIE 356 >gi|296141428|ref|YP_003648671.1| family 3 extracellular solute-binding protein [Tsukamurella paurometabola DSM 20162] gi|296029562|gb|ADG80332.1| extracellular solute-binding protein family 3 [Tsukamurella paurometabola DSM 20162] Length=326 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/329 (49%), Positives = 207/329 (63%), Gaps = 8/329 (2%) Query 1 MTRRALLARAAAPLAPLALAMVLASCGHS--ETLGVEATPTLPLPTPVGMEIMPPQPPLP 58 M RR+L A A L++A+ ++C S E G +A + P P P ++P PLP Sbjct 1 MMRRSLSGIALA----LSVALTTSACVVSAPEAPG-DAVTSFPQPMPGSGTVVPADTPLP 55 Query 59 PDSSSQDCDPTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGF 118 + S + S P A + +A+I RGRL+VG+DIGSNL SFRDPITGEI GF Sbjct 56 TEVSMCPGTLSPSSLPPAGQMAPGTTMAEIFDRGRLVVGIDIGSNLLSFRDPITGEIKGF 115 Query 119 DVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTV 178 D DIA ++A IFG P+ V +RILS AER AL VD+VVKTMS TC+R K V+FS Sbjct 116 DADIAHQIAAAIFGDPNRVHFRILSTAERQQALIDGTVDVVVKTMSATCDRAKQVDFSAT 175 Query 179 YLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVA 238 Y A QRILAPR +PI V DLSG+RVC RGTTSL R+R + P +++ +W+DCLV Sbjct 176 YFIAQQRILAPRGAPINTVGDLSGRRVCEVRGTTSLDRVRRLVPSATVIAADSWSDCLVM 235 Query 239 LQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERI 298 LQQ+++DAVSTDD ILAGL ++DP L + GP M + Y VGI + LVRF+NG L R+ Sbjct 236 LQQQQVDAVSTDDAILAGLEDQDPNLTVTGPSMGLEYYAVGIGKNRPDLVRFINGVLLRM 295 Query 299 RNDGTWNTLYRKWLT-VLGPAPAPPTPRY 326 DGTW LY +W LG + P +Y Sbjct 296 AFDGTWMRLYNQWFAPTLGQVWSAPAAQY 324 >gi|226362770|ref|YP_002780548.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226241255|dbj|BAH51603.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=325 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 145/267 (55%), Positives = 187/267 (71%), Gaps = 4/267 (1%) Query 66 CDPTASLRP----FATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVD 121 C +SLRP +A +A+A IRARGRLIVG D +NLFSFRDP TG ++GFD+D Sbjct 59 CGALSSLRPDPGLRPERAPPGSALAAIRARGRLIVGTDQNTNLFSFRDPKTGTLSGFDID 118 Query 122 IAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLD 181 +A E+ARD+FG PS VE+R+L++A R AL+++ VD+VV SITCER V FS+VY + Sbjct 119 LAREIARDLFGDPSKVEFRLLTSAGRFDALERNDVDLVVHATSITCERAARVGFSSVYFE 178 Query 182 ANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQ 241 A QR+L P S I+ +DL+GKRVC TTSL I+ ++P IV+V +W DCL LQ Sbjct 179 AFQRLLVPEGSGISSPTDLAGKRVCTFIDTTSLATIQRVSPEATIVAVPDWDDCLTTLQL 238 Query 242 REIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRND 301 + DA +TD++ILAGL +DP L IVGP++ +PYGV N +N LVRFVNGTLER+R D Sbjct 239 GQADAATTDNSILAGLAAQDPNLEIVGPNLELEPYGVVANKNNDALVRFVNGTLERMRED 298 Query 302 GTWNTLYRKWLTVLGPAPAPPTPRYVD 328 GTWN LY +WL +LGP PP P Y D Sbjct 299 GTWNRLYDRWLGLLGPTAGPPAPSYRD 325 >gi|343924493|ref|ZP_08764042.1| putative ABC transporter substrate-binding protein [Gordonia alkanivorans NBRC 16433] gi|343765637|dbj|GAA10968.1| putative ABC transporter substrate-binding protein [Gordonia alkanivorans NBRC 16433] Length=338 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/278 (52%), Positives = 192/278 (70%), Gaps = 5/278 (1%) Query 56 PLPPDSSSQDCDPTASLRPFAT-----KAEADAAVADIRARGRLIVGLDIGSNLFSFRDP 110 P+ P SS+ C+ T +LRP A + ++ +A I RGRLIVGLDIGSNLFSFRDP Sbjct 61 PVEPPPSSEACNATLTLRPPAQMPAPGRMPPNSTMAGIFERGRLIVGLDIGSNLFSFRDP 120 Query 111 ITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERR 170 I+G+I GFDVDIA E+A IFG P+ VE+++LS+A+R+ AL+ VD+V+KTMSITC+R Sbjct 121 ISGDIEGFDVDIAREIAGAIFGDPNRVEFQVLSSAQRIDALRDKTVDVVIKTMSITCDRL 180 Query 171 KLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVV 230 + ++FS Y A+QRIL+ R+S I S L+ KRVC ARGTTS+ R++ I P IVS Sbjct 181 RDISFSAPYYVASQRILSFRNSNIVGPSQLADKRVCAARGTTSIGRMQSIQPRVRIVSTT 240 Query 231 NWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRF 290 WADCLV +QQ ++DAV++DD ILAGL +DP++ +VGP + ++ YGVGI +VRF Sbjct 241 TWADCLVLMQQGQVDAVTSDDAILAGLAAQDPWVRVVGPSLGEEFYGVGIPKGEDDMVRF 300 Query 291 VNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 VNG LER R G W + +WLT+L P P Y D Sbjct 301 VNGVLERARATGRWQQIRDRWLTILDSGFGAPQPYYRD 338 >gi|256377588|ref|YP_003101248.1| family 3 extracellular solute-binding protein [Actinosynnema mirum DSM 43827] gi|255921891|gb|ACU37402.1| extracellular solute-binding protein family 3 [Actinosynnema mirum DSM 43827] Length=319 Score = 275 bits (702), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 139/291 (48%), Positives = 191/291 (66%), Gaps = 12/291 (4%) Query 43 PTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFA-----TKAEADAAVADIRARGRLIVG 97 P P ++P + P ++ QDC TASLRP + + + I RG+L+VG Sbjct 36 PGPAEATVLPREAQEP--TAGQDC--TASLRPSRPLPAPGAMPSGSTMRRIAERGQLVVG 91 Query 98 LDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVD 157 +D + L FRDP TGE+ GFDVD+A EVAR + G P+ V +R+L++ +R+ AL+ +VD Sbjct 92 VDQNTYLMGFRDPFTGELQGFDVDLAREVARSLLGDPTKVRFRVLNSDQRLPALETGEVD 151 Query 158 IVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRI 217 +VV+TM+ITCER + VNFST Y +A QR+L P+DS +T ++ LSG++VC G++SL + Sbjct 152 VVVRTMTITCERWRRVNFSTSYYEAGQRVLVPKDSGVTGLTALSGRKVCATTGSSSLAHV 211 Query 218 REIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYG 277 R PV V+V NW DCLV LQQ ++DA+STDDTILAG +DPY +VGP + + YG Sbjct 212 RAHPSGPVPVAVPNWTDCLVMLQQGQVDAISTDDTILAGFAAQDPYTEVVGPRLTTESYG 271 Query 278 VGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 +G+ L RFVNG LER+R DGTW ++RKW LG PAPP P Y D Sbjct 272 IGVAKGADDLTRFVNGVLERVRADGTWARIHRKW---LGDPPAPPAPEYRD 319 >gi|111020803|ref|YP_703775.1| glutamine ABC transporter substrate-binding protein [Rhodococcus jostii RHA1] gi|110820333|gb|ABG95617.1| probable ABC glutamine transporter, substrate binding component [Rhodococcus jostii RHA1] Length=341 Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 135/246 (55%), Positives = 174/246 (71%), Gaps = 1/246 (0%) Query 84 AVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILS 143 ++A I ARGRLIVG+D +NLFSFRDP TG + GFDVD+A EVARDIFG P+ VE+R+L+ Sbjct 96 SLAAIAARGRLIVGVDQNTNLFSFRDPTTGTLQGFDVDLAKEVARDIFGDPTRVEFRLLT 155 Query 144 AAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGK 203 +A R +AL+ ++VD+VV SITCER + V FST Y A QRIL P+ S IT +DL+GK Sbjct 156 SAGRFSALENNEVDVVVHATSITCERARRVGFSTEYFRAFQRILVPQGSDITGPADLAGK 215 Query 204 RVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPY 263 RVC TTSL ++ +AP I++V +W DCLV +Q+++ DAVST D++LAGL +D Sbjct 216 RVCTFVDTTSLATVQRVAPDATILAVPDWDDCLVTMQKKQADAVSTSDSLLAGLASQDRN 275 Query 264 LHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTV-LGPAPAPP 322 IVGP + + +G+G+N LVRFVNGTLERIR DGTW LY +WL LGP PP Sbjct 276 FRIVGPQLEAEHWGIGVNKGRDDLVRFVNGTLERIRADGTWMRLYDRWLAAPLGPIAGPP 335 Query 323 TPRYVD 328 Y D Sbjct 336 PATYRD 341 >gi|302523732|ref|ZP_07276074.1| amino acid ABC transporter ATP-binding protein [Streptomyces sp. AA4] gi|302432627|gb|EFL04443.1| amino acid ABC transporter ATP-binding protein [Streptomyces sp. AA4] Length=321 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 142/296 (48%), Positives = 191/296 (65%), Gaps = 8/296 (2%) Query 34 VEATPTL--PLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATKAEADAAVADIRAR 91 +EA P PTP G + P DS + C+P ASL P ++ I+ R Sbjct 30 MEAAPVTDAAWPTPAG--VGGPDAAAGGDSDTS-CNPLASLAPNGLDTSG-PSLQKIKQR 85 Query 92 GRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVTAL 151 G+LI G+D + LF FR+P TG++ GFD+D+ E+AR IFG HV+YR +++++R T L Sbjct 86 GKLIAGVDQTTYLFGFRNPKTGKLEGFDIDLVNEIARQIFGSDGHVQYRAITSSQRETVL 145 Query 152 QKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVARGT 211 ++ QVD+VV+T SITC RRK V FS+VY A Q+IL P+ S ++DL+GKRVC A + Sbjct 146 KEHQVDVVVRTYSITCARRKQVQFSSVYYVAGQKILVPKSSNAQSLTDLAGKRVCAAAKS 205 Query 212 TSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDM 271 TSL +I PV VSV NW+DCLV LQQ ++DAVSTDDTILAG+ +DP + + G M Sbjct 206 TSLAKIATDPAKPVAVSVPNWSDCLVMLQQGQVDAVSTDDTILAGMAAQDPTVKVAGDPM 265 Query 272 ADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTV-LGPAPAPPTPRY 326 + YGVGI D LVRFVN L++IR DGTW Y+ W+ LGPA +PP+P+Y Sbjct 266 TQENYGVGIPKDEEDLVRFVNAVLDKIRGDGTWANSYQNWVGARLGPA-SPPSPQY 320 >gi|226359784|ref|YP_002777562.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226238269|dbj|BAH48617.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=340 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 129/247 (53%), Positives = 175/247 (71%), Gaps = 2/247 (0%) Query 84 AVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILS 143 A+A+I +RGRLIVG+D +N FSFRDP TG + GFD+D+A E+ +DIFG P+ VE+R+L+ Sbjct 94 ALAEIASRGRLIVGVDQNTNPFSFRDPTTGTLQGFDIDVAKEITKDIFGDPAKVEFRLLT 153 Query 144 AAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGK 203 +A R +AL+++ VD+VV +ITCER + V FST Y A QRIL PR S IT +DL+GK Sbjct 154 SAGRFSALEQNDVDVVVHATAITCERARRVGFSTEYFRAFQRILVPRGSDITGPADLAGK 213 Query 204 RVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPY 263 RVC TTSL ++ +AP IV+V +W DCLV +Q+R+ DA ST D +LAGLV +DP+ Sbjct 214 RVCTFVDTTSLPTVQRVAPEATIVAVPDWDDCLVTMQKRQADATSTSDALLAGLVSQDPH 273 Query 264 LHIVGPDM-ADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLT-VLGPAPAP 321 IVGP M ++ +G+ +N L+RFVNGTL+R+R+DGTW LY +W+ LGP P Sbjct 274 FQIVGPPMEGEEHWGLAVNKYKDDLIRFVNGTLDRMRSDGTWMRLYDRWIAGSLGPIAGP 333 Query 322 PTPRYVD 328 P Y D Sbjct 334 PPATYRD 340 >gi|300782280|ref|YP_003762571.1| ABC transporter substrate-binding protein [Amycolatopsis mediterranei U32] gi|299791794|gb|ADJ42169.1| ABC transport system substrate-binding protein [Amycolatopsis mediterranei U32] gi|340523641|gb|AEK38846.1| ABC transporter substrate-binding protein [Amycolatopsis mediterranei S699] Length=314 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/319 (46%), Positives = 200/319 (63%), Gaps = 21/319 (6%) Query 19 LAMVLASCGHSETLGVEATPTLPL-PTPVGMEIMP-PQPPLPPDS-----SSQDCDPTAS 71 +A++ ASCG + P+ P PVG P P PD+ S C+P AS Sbjct 5 VALLAASCGSAGK---------PVDPAPVGNAAWPQPAHVGGPDATAGGGSDTSCNPLAS 55 Query 72 LRPFATKAEA--DAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARD 129 L P ++ + ++DIR RG+LI G+D + LF FR+P +G + GFD+D+ VA+ Sbjct 56 LVPASSSTTVPDSSTMSDIRKRGKLIAGVDQTTYLFGFRNPTSGNLEGFDIDMVNAVAKA 115 Query 130 IFG-VPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILA 188 IFG HV++R + +++R L+K QVDIVV+T SITC R+K V FS+VY A Q+IL Sbjct 116 IFGSADGHVQFRAIPSSQREEVLKKHQVDIVVRTYSITCARKKDVEFSSVYYVAGQKILV 175 Query 189 PRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVS 248 P++S K+SDLSGKRVC + +TSL +I A PV VSV NW+DCLV LQQ ++DAVS Sbjct 176 PKESKAQKLSDLSGKRVCATKKSTSLAKIATDAAKPVPVSVDNWSDCLVMLQQGQVDAVS 235 Query 249 TDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLY 308 TDDTILAG+ +D L + G + + YG+G+ D LVR+VN L++IR +G W Y Sbjct 236 TDDTILAGMAAQDSTLEVRGEPLTQENYGIGVPKDRPDLVRYVNAVLDQIRGNGVWQDSY 295 Query 309 RKWLTV-LGPAPAPPTPRY 326 R+W+ LGPA +PP P+Y Sbjct 296 RRWVEARLGPA-SPPAPQY 313 >gi|326384625|ref|ZP_08206303.1| extracellular solute-binding protein family 3 protein [Gordonia neofelifaecis NRRL B-59395] gi|326196592|gb|EGD53788.1| extracellular solute-binding protein family 3 protein [Gordonia neofelifaecis NRRL B-59395] Length=328 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 137/312 (44%), Positives = 195/312 (63%), Gaps = 14/312 (4%) Query 20 AMVLASCGHSETLGV----EATPTLPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRP- 74 A+V+A C +ET+ T PLP V P P +S+ +C+ TA LRP Sbjct 19 AVVVAGCA-TETVSPADPPSTTANAPLPPDVTFGAQPDAP-----TSTAECNATAGLRPD 72 Query 75 ---FATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIF 131 + + + I RGRL+VG D+GSN SFRDPI+G++ GFD+D+A ++ IF Sbjct 73 PLPEPRQMPPGSTMDRIAKRGRLVVGTDLGSNPLSFRDPISGDVKGFDIDVAHWISAAIF 132 Query 132 GVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRD 191 G P+ +EYR+++ R AL+ VDIVVKTMSITC+R K V+FS Y A+Q+ILA R+ Sbjct 133 GDPNLIEYRMITNDNRSEALENGTVDIVVKTMSITCDRLKTVSFSVPYYAASQQILAYRN 192 Query 192 SPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDD 251 S I++ SDL+GK VC R +TS+ R++E P ++ +WADCLV +QQ ++DA+++DD Sbjct 193 SGISQASDLAGKNVCATRSSTSIARVQEAVPSAKFITTASWADCLVMMQQGQVDAITSDD 252 Query 252 TILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKW 311 ILAG+ +DP++ +VG + + YGVGI LVRFVNG L DG+W Y +W Sbjct 253 PILAGIAAQDPWVQVVGDSLGTEYYGVGIPKGQDDLVRFVNGVLAAREADGSWQRSYNEW 312 Query 312 LTVLGPAPAPPT 323 L++LGP PPT Sbjct 313 LSILGPGYPPPT 324 >gi|226359768|ref|YP_002777546.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226238253|dbj|BAH48601.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=329 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 145/321 (46%), Positives = 191/321 (60%), Gaps = 13/321 (4%) Query 14 LAPLALAMVL-ASCGHSETLGVEATPTLP-----LPTPVGMEIMPPQPPLPPDSSSQDCD 67 L LA VL A CG + TP P VG I+ P PPD C Sbjct 16 LGGLAFGTVLIAGCGSPDA----PTPMFSGDFTEFPASVGARIIEPSESPPPDGQPSSCA 71 Query 68 PTASLRPFATKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVA 127 PT SLRP A A+ +IRARG L+V +D +NLFSFRDP TG +TGF VD+A EVA Sbjct 72 PTVSLRPGIAGAGG--ALGEIRARGSLVVAVDQNTNLFSFRDPTTGTLTGFGVDLAREVA 129 Query 128 RDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRIL 187 RD+ G P+ VE+R L + + L D++V+ +++ CE + V FSTVYL+ +R++ Sbjct 130 RDLLGDPAKVEFRPLGSGDGAEMLAHRDADMIVRPVALPCESPQDVAFSTVYLETPRRLV 189 Query 188 APRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAV 247 S I++ +DL+ +RVC S+ + IAP IV+V +W DCL+A+QQR++DAV Sbjct 190 VRVGSGISEPADLARRRVCTHDDPASVSALSRIAPKATIVAVPDWDDCLMAIQQRQVDAV 249 Query 248 STDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTL 307 +LAGLV +DP L IVGPD Y + + LVRFVNGTLER+R DGTW L Sbjct 250 -VGAALLAGLVAQDPNLDIVGPDSDSARYAIALAPGRDDLVRFVNGTLERLRTDGTWTAL 308 Query 308 YRKWLTVLGPAPAPPTPRYVD 328 Y +WL+ LGPAPAPP+P Y D Sbjct 309 YDRWLSPLGPAPAPPSPDYRD 329 >gi|257057662|ref|YP_003135494.1| periplasmic component of amino acid ABC-type transporter/signal transduction system [Saccharomonospora viridis DSM 43017] gi|256587534|gb|ACU98667.1| periplasmic component of amino acid ABC-type transporter/signal transduction system [Saccharomonospora viridis DSM 43017] Length=324 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/312 (47%), Positives = 192/312 (62%), Gaps = 10/312 (3%) Query 19 LAMVLASCGHSETLGVEATPT--LPLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFA 76 A+ LA C S ++ P + P P G EI P S +DCDPTASLRP + Sbjct 18 FAVALAGC-SSGAQPIDPAPVGEVQRPFPAGTEIDPELGS--GGGSEEDCDPTASLRPNS 74 Query 77 TKAEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSH 136 + + +A I+ RG LIVG+D + LF F DP TG+++GFD+DIA ++A + G Sbjct 75 S-VPPGSTMAKIKERGHLIVGVDQNTYLFGFPDPETGKLSGFDIDIARKIAEALLGNADA 133 Query 137 VEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITK 196 V ++ +S+AER+ AL+ VDIVV+T SITC+R + +NFSTVY A QR+L P S Sbjct 134 VHFKAISSAERIDALRNGDVDIVVRTFSITCDRLEDINFSTVYYVAGQRVLVPVGSTARG 193 Query 197 VSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAG 256 +SDL KRVC A+ +TSLR I P P+ V+V +W+DCLV LQQ ++DA+STDDTILAG Sbjct 194 LSDLGDKRVCAAKDSTSLRNIAASRPRPIPVAVDDWSDCLVLLQQGQVDAISTDDTILAG 253 Query 257 LVEED-PYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWL-TV 314 L +D IVG + YG+GI +N +VRFVN LE IR G W Y +WL Sbjct 254 LRAQDRTGTKIVGEPFTKEYYGIGIPKENEDMVRFVNAVLENIRG-GAWQASYDRWLREH 312 Query 315 LGPAPAPPTPRY 326 LGPA +PP P Y Sbjct 313 LGPA-SPPKPEY 323 >gi|111017250|ref|YP_700222.1| amino acid ABC transporter periplasmic substrate-binding protein [Rhodococcus jostii RHA1] gi|110816780|gb|ABG92064.1| ABC amino acid transporter, periplasmic substrate binding protein [Rhodococcus jostii RHA1] Length=329 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 124/297 (42%), Positives = 178/297 (60%), Gaps = 4/297 (1%) Query 20 AMVLASCGHSETLGVEATPTL-PLPTPVGMEIMPPQPPLPPDSSSQDCDPTASLRPFATK 78 A+++A CG + + P G +++ P PPD+ + C ASLRP Sbjct 23 AVLIAGCGAPDAPAPRFSGDFTEFPLSAGAQLIAPSDTPPPDTETPACAAPASLRP--GT 80 Query 79 AEADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVE 138 + DIRARG ++V +D +NLFSFRDP TG +TGF VD+A EVARD+ G P+ VE Sbjct 81 PSFGGTLGDIRARGTVVVAVDQNTNLFSFRDPTTGTLTGFGVDLAREVARDLLGDPTKVE 140 Query 139 YRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVS 198 +R L + L D+VV+ +++ C+ + + FSTVYL+A++R++ S I+ + Sbjct 141 FRPLGTDDGAEMLADRDADMVVRPVALPCQGLQDLTFSTVYLEASRRLVVRDGSGISGPA 200 Query 199 DLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLV 258 DL+ +RVC S+ + IAP I++V +W DCL+A+QQR+ DAV+ LAGLV Sbjct 201 DLARRRVCTHHDPASMSALSRIAPKATILAVPDWDDCLMAIQQRQADAVAG-AAFLAGLV 259 Query 259 EEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVL 315 +DP L IVGP+ Y +G+ N LVRFVNGTLER+R DGTW LY +WL+ L Sbjct 260 AQDPNLEIVGPETDSAQYAIGLAPGNDDLVRFVNGTLERLRTDGTWAALYERWLSSL 316 >gi|336320643|ref|YP_004600611.1| family 3 extracellular solute-binding protein [Cellvibrio gilvus ATCC 13127] gi|336104224|gb|AEI12043.1| extracellular solute-binding protein family 3 [Cellvibrio gilvus ATCC 13127] Length=325 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 129/321 (41%), Positives = 182/321 (57%), Gaps = 13/321 (4%) Query 7 LARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEIMPPQPPLPPDSSSQDC 66 L R+A P A LA+A+ L +C TP+ P P PP ++ Sbjct 12 LLRSALP-AVLAVALALGAC----------TPSRTAEVPTPAASASSAPAAPPAAAPTCS 60 Query 67 DPTASLRPFATKAEADAA-VADIRARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGE 125 D TAS P + D+A + +IR RGRL+VG+ + L R+P++G I GFD+D+ Sbjct 61 DLTASYAPDPDTLDGDSASIREIRERGRLVVGVSADTLLMGARNPLSGRIEGFDIDMLRA 120 Query 126 VARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQR 185 VA IFG P + YR++++ +R+ LQ VD+V +T SITCER + FS YL A Q+ Sbjct 121 VAESIFGDPDRISYRVITSGQRLDVLQDGSVDLVARTFSITCERWDEIAFSAEYLTAGQK 180 Query 186 ILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLVALQQREID 245 +L RDS T ++DL G+RVC GTT+L R+ E P V CLV QQ ++D Sbjct 181 VLVTRDSTATGIADLDGRRVCAPDGTTTLARLAEY-PGVEAVPAATHTRCLVLFQQGKVD 239 Query 246 AVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWN 305 A++ DDTILAG +DPY +VG ++ +PYG+G+ D+ LV++VN L+ ++ DG W Sbjct 240 AITGDDTILAGFAAQDPYAKVVGDAISAEPYGIGVAADDVELVKYVNAVLDEVKADGRWE 299 Query 306 TLYRKWLTVLGPAPAPPTPRY 326 YR WL LG AP PP Y Sbjct 300 ASYRTWLRALGEAPEPPASVY 320 >gi|227547864|ref|ZP_03977913.1| amino acid ABC superfamily ATP binding cassette transporter binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227080049|gb|EEI18012.1| amino acid ABC superfamily ATP binding cassette transporter binding protein [Corynebacterium lipophiloflavum DSM 44291] Length=332 Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 125/297 (43%), Positives = 179/297 (61%), Gaps = 9/297 (3%) Query 36 ATPTLPLPTPVGMEIMP----PQPPLPPDSS-SQDCDPTASLRP-FATKAEADAAVADIR 89 ATP P+ G+ + P +P + P++ +QD + SLRP AT AE + D+ Sbjct 29 ATPATSPPSYSGVPLPPGAVLDRPGVAPETGFAQDTEWEGSLRPDNATPAER---IPDVV 85 Query 90 ARGRLIVGLDIGSNLFSFRDPITGEITGFDVDIAGEVARDIFGVPSHVEYRILSAAERVT 149 RGR++VG+D L S+RD G++ GF++D+A EV+RDIFG P V++R + + +R Sbjct 86 ERGRIVVGVDQSQYLLSYRDVTAGDLRGFEIDLAREVSRDIFGDPDRVDFRFVGSQQRAQ 145 Query 150 ALQKSQVDIVVKTMSITCERRKLVNFSTVYLDANQRILAPRDSPITKVSDLSGKRVCVAR 209 +LQ +VDIV++TMS+T R V+FST YL + R+L PRD I+ DL G VCV Sbjct 146 SLQNGEVDIVIRTMSVTPTRVASVDFSTPYLTSYVRLLVPRDRGISSEDDLPGTTVCVVD 205 Query 210 GTTSLRRIREIAPPPVIVSVVNWADCLVALQQREIDAVSTDDTILAGLVEEDPYLHIVGP 269 G+ ++ REIAP I+ WADCL+A QQ DA+ D ILAG+V +DPY I+ Sbjct 206 GSNLVQLAREIAPQSTILRTRTWADCLMATQQFHADAILADGAILAGMVSQDPYTTILPR 265 Query 270 DMADQPYGVGINLDNTGLVRFVNGTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRY 326 Q Y VG + + G+ VN T+ER+RNDGTWN +Y +WL+ +P+ P RY Sbjct 266 RYGRQQYAVGTHKGDAGMTMQVNSTMERLRNDGTWNAMYERWLSGSLASPSMPELRY 322 >gi|306836971|ref|ZP_07469921.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Corynebacterium accolens ATCC 49726] gi|304567154|gb|EFM42769.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Corynebacterium accolens ATCC 49726] Length=339 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/336 (40%), Positives = 187/336 (56%), Gaps = 20/336 (5%) Query 8 ARAAAPLAPLALAMVLASCGHSETLGVEATPTLPLPTPVGMEI-MPPQPPLPPDSSSQDC 66 AR APL ++A+C G + PL +P + P PPLP S+ ++ Sbjct 5 ARLTAPLT-----AIVATCSVLALAGCDIRSVPPLESPEQQALDASPGPPLPEGSTIEEA 59 Query 67 DPTASLRPFATKAE---------ADAAVADIRARGRLIVGLDIGSNLFSFRDPITGEITG 117 TA + TK + A V DI RGRLIVG+D +NL S+RD +G++ G Sbjct 60 GSTAPKQEDDTKLKGTYRPDDKTAKERVPDIVKRGRLIVGVDRSNNLLSYRDAASGDVRG 119 Query 118 FDVDIAGEVARDIFGVPSHVEYRILSAAERVTALQKSQVDIVVKTMSITCERRKLVNFST 177 F+VDIA E+ARDIFG P+ V++R + +++R AL VDI+V+TM+I+ ER K V FS Sbjct 120 FEVDIAHEIARDIFGDPNKVDFRFVESSDRTAALDNGTVDIIVRTMTISPEREKEVAFSI 179 Query 178 VYLDANQRILAPRDSPITKVSDLSGKRVCVARGTTSLRRIREIAPPPVIVSVVNWADCLV 237 Y+ R+L S + + D GKR+C RG+T+L IRE AP I+ +W DCL+ Sbjct 180 PYMTTQTRMLVLTSSGMNSIDDADGKRLCGVRGSTALDTIRERAPRSDILITRSWGDCLM 239 Query 238 ALQQREIDAVSTDDTILAGLVEEDPYLHIVGPDMADQPYGVGINLDNTG-----LVRFVN 292 ALQ + D V DD +L+G+ +D Y IVG + + YGV L N L+R VN Sbjct 240 ALQLNQADGVVVDDALLSGMAAQDSYTSIVGEPLKTENYGVAARLPNKDHDTRPLLRQVN 299 Query 293 GTLERIRNDGTWNTLYRKWLTVLGPAPAPPTPRYVD 328 TLERIR DGTW+ ++ +WL P P+ Y++ Sbjct 300 STLERIRRDGTWSDIFDRWLGAYLDEPTLPSGTYIE 335 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 580492275184 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40