BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0420c Length=136 Score E Sequences producing significant alignments: (Bits) Value gi|15607561|ref|NP_214934.1| transmembrane protein [Mycobacteriu... 280 6e-74 gi|31791598|ref|NP_854091.1| transmembrane protein [Mycobacteriu... 277 3e-73 gi|298523896|ref|ZP_07011305.1| conserved hypothetical protein [... 253 8e-66 gi|308231546|ref|ZP_07412852.2| transmembrane protein [Mycobacte... 232 1e-59 gi|308371667|ref|ZP_07425742.2| transmembrane protein [Mycobacte... 223 6e-57 gi|183980754|ref|YP_001849045.1| hypothetical protein MMAR_0731 ... 144 6e-33 gi|118618875|ref|YP_907207.1| hypothetical protein MUL_3595 [Myc... 130 7e-29 gi|296167045|ref|ZP_06849457.1| conserved hypothetical protein [... 87.8 5e-16 gi|254773157|ref|ZP_05214673.1| hypothetical protein MaviaA2_005... 77.8 5e-13 gi|41406216|ref|NP_959052.1| hypothetical protein MAP0118 [Mycob... 77.0 8e-13 gi|118466320|ref|YP_879408.1| hypothetical protein MAV_0112 [Myc... 77.0 8e-13 gi|336458082|gb|EGO37068.1| hypothetical protein MAPs_16680 [Myc... 75.9 2e-12 gi|108797538|ref|YP_637735.1| hypothetical protein Mmcs_0558 [My... 74.3 5e-12 gi|254821563|ref|ZP_05226564.1| hypothetical protein MintA_16637... 71.6 4e-11 gi|342860179|ref|ZP_08716831.1| hypothetical protein MCOL_14910 ... 69.7 2e-10 gi|118472754|ref|YP_885217.1| hypothetical protein MSMEG_0813 [M... 69.3 2e-10 gi|108799681|ref|YP_639878.1| hypothetical protein Mmcs_2715 [My... 42.7 0.017 gi|126435325|ref|YP_001071016.1| hypothetical protein Mjls_2745 ... 42.7 0.017 gi|240168277|ref|ZP_04746936.1| hypothetical protein MkanA1_0313... 42.4 0.025 gi|120406688|ref|YP_956517.1| hypothetical protein Mvan_5746 [My... 41.6 0.035 gi|342857218|ref|ZP_08713874.1| hypothetical protein MCOL_00030 ... 41.6 0.042 gi|254821885|ref|ZP_05226886.1| hypothetical protein MintA_18267... 41.6 0.044 gi|296166090|ref|ZP_06848535.1| conserved hypothetical protein [... 39.7 0.17 gi|118465784|ref|YP_881480.1| hypothetical protein MAV_2276 [Myc... 39.3 0.17 gi|336461813|gb|EGO40669.1| hypothetical protein MAPs_26490 [Myc... 39.3 0.17 gi|206559568|ref|YP_002230329.1| putative O-antigen acetylase [B... 36.2 1.9 gi|221210346|ref|ZP_03583326.1| acyltransferase 3 [Burkholderia ... 35.4 3.1 >gi|15607561|ref|NP_214934.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15839807|ref|NP_334844.1| hypothetical protein MT0434 [Mycobacterium tuberculosis CDC1551] gi|121636334|ref|YP_976557.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 49 more sequence titles Length=136 Score = 280 bits (715), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%) Query 1 LRLHDASAAAPESRMHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGI 60 +RLHDASAAAPESRMHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGI Sbjct 1 MRLHDASAAAPESRMHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGI 60 Query 61 KVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMW 120 KVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMW Sbjct 61 KVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMW 120 Query 121 VHNDQHQGQSYPGYRA 136 VHNDQHQGQSYPGYRA Sbjct 121 VHNDQHQGQSYPGYRA 136 >gi|31791598|ref|NP_854091.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|31617184|emb|CAD93291.1| POSSIBLE TRANSMEMBRANE PROTEIN [Mycobacterium bovis AF2122/97] Length=136 Score = 277 bits (709), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 134/136 (99%), Positives = 135/136 (99%), Gaps = 0/136 (0%) Query 1 LRLHDASAAAPESRMHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGI 60 +RLHDASAAAPESRMHIARH EAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGI Sbjct 1 MRLHDASAAAPESRMHIARHEEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGI 60 Query 61 KVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMW 120 KVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMW Sbjct 61 KVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMW 120 Query 121 VHNDQHQGQSYPGYRA 136 VHNDQHQGQSYPGYRA Sbjct 121 VHNDQHQGQSYPGYRA 136 >gi|298523896|ref|ZP_07011305.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298493690|gb|EFI28984.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=122 Score = 253 bits (645), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%) Query 15 MHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQ 74 MHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQ Sbjct 1 MHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQ 60 Query 75 ALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGY 134 ALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGY Sbjct 61 ALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGY 120 Query 135 RA 136 RA Sbjct 121 RA 122 >gi|308231546|ref|ZP_07412852.2| transmembrane protein [Mycobacterium tuberculosis SUMu001] gi|308369388|ref|ZP_07417601.2| transmembrane protein [Mycobacterium tuberculosis SUMu002] gi|308370402|ref|ZP_07421375.2| transmembrane protein [Mycobacterium tuberculosis SUMu003] 22 more sequence titles Length=113 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/113 (99%), Positives = 113/113 (100%), Gaps = 0/113 (0%) Query 24 VNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDN 83 +NRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDN Sbjct 1 MNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDN 60 Query 84 TQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGYRA 136 TQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGYRA Sbjct 61 TQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGYRA 113 >gi|308371667|ref|ZP_07425742.2| transmembrane protein [Mycobacterium tuberculosis SUMu004] gi|308335886|gb|EFP24737.1| transmembrane protein [Mycobacterium tuberculosis SUMu004] Length=108 Score = 223 bits (568), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%) Query 29 MFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQALV 88 MFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQALV Sbjct 1 MFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQALV 60 Query 89 TRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGYRA 136 TRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGYRA Sbjct 61 TRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQSYPGYRA 108 >gi|183980754|ref|YP_001849045.1| hypothetical protein MMAR_0731 [Mycobacterium marinum M] gi|183174080|gb|ACC39190.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=121 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 69/117 (59%), Positives = 87/117 (75%), Gaps = 4/117 (3%) Query 13 SRMHIARHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNL 72 S +HI GEAV RQ+++GI G+++ +IGL ALW PVYLD YD YG+KV+CG G+ S+L Sbjct 7 SGIHIESRGEAVTHRQLYLGIAGVVVGIIGLFALWLPVYLDHYDLYGMKVSCGRGFTSDL 66 Query 73 TQALYADGNDNTQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQ 129 TQA G ALV +CD+ALL RRAWAIP+VA+GWLLVT FLV WVH+ Q + Q Sbjct 67 TQATQGGGG----ALVDQCDSALLFRRAWAIPAVAIGWLLVTAFLVSWVHHGQREEQ 119 >gi|118618875|ref|YP_907207.1| hypothetical protein MUL_3595 [Mycobacterium ulcerans Agy99] gi|118570985|gb|ABL05736.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=104 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 62/106 (59%), Positives = 80/106 (76%), Gaps = 4/106 (3%) Query 24 VNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDN 83 + RQ+++GI G+++ +IGL ALW PVYLD YD YG+KV+CG G+ S+LTQA G Sbjct 1 MTHRQLYLGIAGVVVGIIGLFALWLPVYLDHYDLYGMKVSCGRGFTSDLTQATQGGGG-- 58 Query 84 TQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQGQ 129 ALV +CD+ALL RRAWAIP+VA+GWLLVT FLV WVH+ Q + Q Sbjct 59 --ALVDQCDSALLFRRAWAIPAVAIGWLLVTAFLVSWVHHGQREEQ 102 >gi|296167045|ref|ZP_06849457.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897602|gb|EFG77196.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=112 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/104 (41%), Positives = 63/104 (61%), Gaps = 1/104 (0%) Query 34 TGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQALVTRCDT 93 T ++ +G+ AL PV++D YD YG +V CGSG+ ++LTQA ADG V +CD Sbjct 4 TAIVALTVGIFALCLPVFIDAYDQYGWQVKCGSGFATDLTQASSADGQGRGANYVDQCDN 63 Query 94 ALLVRRAWAIPSVALGWLLVTGF-LVMWVHNDQHQGQSYPGYRA 136 AL++RRAWAIP+ A+G + + G + H+ ++ G RA Sbjct 64 ALMIRRAWAIPAAAIGGITLVGLAAAVLAHDRRNTGDEQSSARA 107 >gi|254773157|ref|ZP_05214673.1| hypothetical protein MaviaA2_00536 [Mycobacterium avium subsp. avium ATCC 25291] Length=114 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 37/73 (51%), Positives = 52/73 (72%), Gaps = 1/73 (1%) Query 42 GLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAW 101 GL+AL FPV++D YD +G++V CGSG+ + LTQA A G T + V +C +AL+VRR W Sbjct 18 GLLALRFPVFIDAYDQFGLQVKCGSGFTTELTQAASAVGPAGT-SYVDQCGSALMVRRLW 76 Query 102 AIPSVALGWLLVT 114 AIP+ LG + +T Sbjct 77 AIPTAVLGGMALT 89 >gi|41406216|ref|NP_959052.1| hypothetical protein MAP0118 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394564|gb|AAS02435.1| hypothetical protein MAP_0118 [Mycobacterium avium subsp. paratuberculosis K-10] Length=122 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/94 (43%), Positives = 56/94 (60%), Gaps = 1/94 (1%) Query 21 GEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADG 80 G V R I ++ GL+AL FPV++D YD +G++V CGSG+ + LTQA G Sbjct 5 GGGVMHRGPLIVFAAVVCLAGGLLALRFPVFIDAYDQFGLQVKCGSGFTTELTQAASVVG 64 Query 81 NDNTQALVTRCDTALLVRRAWAIPSVALGWLLVT 114 T V +C +AL+VRR WAIP+ LG + +T Sbjct 65 PAGTN-YVDQCGSALMVRRLWAIPTAVLGGMALT 97 >gi|118466320|ref|YP_879408.1| hypothetical protein MAV_0112 [Mycobacterium avium 104] gi|118167607|gb|ABK68504.1| conserved hypothetical protein [Mycobacterium avium 104] Length=114 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 37/73 (51%), Positives = 51/73 (70%), Gaps = 1/73 (1%) Query 42 GLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAW 101 GL+AL FPV++D YD +G++V CGSG+ + LTQA A G T V +C +AL+VRR W Sbjct 18 GLLALRFPVFIDAYDQFGLQVKCGSGFTTELTQASSAVGPAGTN-YVDQCGSALMVRRLW 76 Query 102 AIPSVALGWLLVT 114 AIP+ LG + +T Sbjct 77 AIPTAVLGGMALT 89 >gi|336458082|gb|EGO37068.1| hypothetical protein MAPs_16680 [Mycobacterium avium subsp. paratuberculosis S397] Length=114 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/73 (50%), Positives = 50/73 (69%), Gaps = 1/73 (1%) Query 42 GLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQALVTRCDTALLVRRAW 101 GL+AL FPV++D YD +G++V CGSG+ + LTQA G T V +C +AL+VRR W Sbjct 18 GLLALRFPVFIDAYDQFGLQVKCGSGFTTELTQAASVVGPAGTN-YVDQCGSALMVRRLW 76 Query 102 AIPSVALGWLLVT 114 AIP+ LG + +T Sbjct 77 AIPTAVLGGMALT 89 >gi|108797538|ref|YP_637735.1| hypothetical protein Mmcs_0558 [Mycobacterium sp. MCS] gi|119866624|ref|YP_936576.1| hypothetical protein Mkms_0570 [Mycobacterium sp. KMS] gi|126433160|ref|YP_001068851.1| hypothetical protein Mjls_0548 [Mycobacterium sp. JLS] gi|108767957|gb|ABG06679.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692713|gb|ABL89786.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126232960|gb|ABN96360.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=112 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/85 (50%), Positives = 52/85 (62%), Gaps = 6/85 (7%) Query 24 VNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYA--DGN 81 ++ R +IGI G +L IGL AL FPV +D YD +G +V CGSG+ +NLTQA A DG Sbjct 1 MSARAWYIGIGGAILMAIGLFALRFPVLIDGYDQWGWQVECGSGFVANLTQAENAAVDGT 60 Query 82 DNTQALVTRCDTALLVRRAWAIPSV 106 D V C ALL RR W IP + Sbjct 61 D----FVASCQNALLTRRLWTIPLI 81 >gi|254821563|ref|ZP_05226564.1| hypothetical protein MintA_16637 [Mycobacterium intracellulare ATCC 13950] Length=123 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 12/100 (12%) Query 27 RQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQA 86 R I ++ GL AL FPV+++ YD +G +V CGSG+ ++LTQA A+ Q Sbjct 4 RGPLIVFAAVVFLAGGLFALRFPVFIEAYDQFGWQVKCGSGFTTDLTQASNAEKKPPGQK 63 Query 87 ------------LVTRCDTALLVRRAWAIPSVALGWLLVT 114 V +C+ AL+ RRAWAIP+ ALG L +T Sbjct 64 ASAGAPHAAGNNYVRQCNNALMARRAWAIPAAALGGLTLT 103 >gi|342860179|ref|ZP_08716831.1| hypothetical protein MCOL_14910 [Mycobacterium colombiense CECT 3035] gi|342132557|gb|EGT85786.1| hypothetical protein MCOL_14910 [Mycobacterium colombiense CECT 3035] Length=115 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/91 (41%), Positives = 56/91 (62%), Gaps = 2/91 (2%) Query 24 VNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDN 83 VNR + + + LA GL AL+ PV++D YD +G +V CG+G+ + L QA A G Sbjct 2 VNRGPLIVFAAVVFLAG-GLFALYLPVFIDAYDQFGWQVKCGNGFTTELDQASSAVGPPG 60 Query 84 TQALVTRCDTALLVRRAWAIPSVALGWLLVT 114 + + +C +AL+VRR WAIP+ LG + +T Sbjct 61 SN-YIDQCGSALMVRRLWAIPTAVLGGMALT 90 >gi|118472754|ref|YP_885217.1| hypothetical protein MSMEG_0813 [Mycobacterium smegmatis str. MC2 155] gi|118174041|gb|ABK74937.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=108 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/104 (33%), Positives = 58/104 (56%), Gaps = 5/104 (4%) Query 24 VNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDN 83 ++ R +++GI G ++ IGL + VYLD +D YG+++ CG+ + +L QA A Sbjct 1 MSYRAVYLGIAGAIVLAIGLYLMSMTVYLDDFDRYGMQIPCGTAFSEHLVQAEAAGAE-- 58 Query 84 TQALVTRCDTALLVRRAWAIPSVALGWLLVTGFLVMWVHNDQHQ 127 V +C +AL+ RR W +P VA+G L + L+ + H+ Sbjct 59 ---YVDKCGSALMTRRLWTMPVVAVGALALIAVLLRAATSSAHE 99 >gi|108799681|ref|YP_639878.1| hypothetical protein Mmcs_2715 [Mycobacterium sp. MCS] gi|119868791|ref|YP_938743.1| hypothetical protein Mkms_2759 [Mycobacterium sp. KMS] gi|108770100|gb|ABG08822.1| hypothetical protein Mmcs_2715 [Mycobacterium sp. MCS] gi|119694880|gb|ABL91953.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=112 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/98 (32%), Positives = 47/98 (48%), Gaps = 13/98 (13%) Query 33 ITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYAD--GNDNTQAL--- 87 + G ++ V+G+ L PV + D G V CG+ S+ + A A+ G N L Sbjct 9 VVGAIILVVGIAGLLVPVSVSGDD--GKSVGCGNALISDTSGAEAANNQGVANVPVLNQI 66 Query 88 ------VTRCDTALLVRRAWAIPSVALGWLLVTGFLVM 119 V C++A+ RRAWAIP +G L+ G V+ Sbjct 67 VPHTDYVALCESAVGSRRAWAIPVAVVGALIAVGAAVV 104 >gi|126435325|ref|YP_001071016.1| hypothetical protein Mjls_2745 [Mycobacterium sp. JLS] gi|126235125|gb|ABN98525.1| hypothetical protein Mjls_2745 [Mycobacterium sp. JLS] Length=112 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/98 (32%), Positives = 47/98 (48%), Gaps = 13/98 (13%) Query 33 ITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYAD--GNDNTQAL--- 87 + G ++ V+G+ L PV + D G V CG+ S+ + A A+ G N L Sbjct 9 VVGAIILVVGIAGLLVPVSVSGDD--GKSVGCGNALISDTSGAEAANNQGVANVPVLNQI 66 Query 88 ------VTRCDTALLVRRAWAIPSVALGWLLVTGFLVM 119 V C++A+ RRAWAIP +G L+ G V+ Sbjct 67 VPHTDYVALCESAVGSRRAWAIPVAVVGALIAVGAAVV 104 >gi|240168277|ref|ZP_04746936.1| hypothetical protein MkanA1_03132 [Mycobacterium kansasii ATCC 12478] Length=118 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/89 (29%), Positives = 47/89 (53%), Gaps = 14/89 (15%) Query 27 RQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQA 86 R++ I + +LL V G++ L PV + + G ++CG+G+ ++L+ A A+ ++ Sbjct 4 RRLIIAVGAVLL-VAGVIGLLVPVSVSNSN--GGSISCGNGFATDLSAARNANNSNGADI 60 Query 87 -----------LVTRCDTALLVRRAWAIP 104 V +C++A+ RR WAIP Sbjct 61 PILNQVIPHTDFVAQCESAVSSRRMWAIP 89 >gi|120406688|ref|YP_956517.1| hypothetical protein Mvan_5746 [Mycobacterium vanbaalenii PYR-1] gi|119959506|gb|ABM16511.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=112 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/90 (35%), Positives = 45/90 (50%), Gaps = 16/90 (17%) Query 26 RRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGND--N 83 RR + I +LLA G++AL PV + D + CG+G ++L+QA AD + N Sbjct 4 RRLIMIAGVAVLLA--GVIALLVPVSVPGPDG---SIGCGNGIAADLSQARDADSGNLAN 58 Query 84 TQAL---------VTRCDTALLVRRAWAIP 104 L C++AL RR+WAIP Sbjct 59 LPVLNEIVPHTDYAAACESALSSRRSWAIP 88 >gi|342857218|ref|ZP_08713874.1| hypothetical protein MCOL_00030 [Mycobacterium colombiense CECT 3035] gi|342134551|gb|EGT87717.1| hypothetical protein MCOL_00030 [Mycobacterium colombiense CECT 3035] Length=113 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/103 (31%), Positives = 54/103 (53%), Gaps = 14/103 (13%) Query 27 RQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGND--NT 84 R++ IG+ +LL + G++ L PV + D+ G V CG+ ++L+ A A+ ++ N Sbjct 4 RRLIIGVGAVLL-LAGVIGLLAPVSVS--DSNGHSVGCGNAVATDLSAAQSANNSNGANI 60 Query 85 QAL---------VTRCDTALLVRRAWAIPSVALGWLLVTGFLV 118 L V +C +++ RRAWAIP LG + + L+ Sbjct 61 PILNQIVPHTDYVAQCQSSVGSRRAWAIPLAVLGVIAIGATLL 103 >gi|254821885|ref|ZP_05226886.1| hypothetical protein MintA_18267 [Mycobacterium intracellulare ATCC 13950] Length=108 Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/103 (31%), Positives = 53/103 (52%), Gaps = 19/103 (18%) Query 29 MFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQA-- 86 M IG+ +LL + G++ L PV + D+ G V CG+ ++L++A A+ ++ Sbjct 1 MIIGVGAVLL-LAGVIGLLAPVSV--TDSNGHSVGCGNAVATDLSEARSANNSNGANIPI 57 Query 87 ---------LVTRCDTALLVRRAWAIP-----SVALGWLLVTG 115 V +C +++ RRAWAIP +A+G L+TG Sbjct 58 LNQIVPHTDFVAQCQSSVGGRRAWAIPLAVLGVIAIGATLLTG 100 >gi|296166090|ref|ZP_06848535.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898499|gb|EFG78060.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=112 Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/103 (28%), Positives = 52/103 (51%), Gaps = 14/103 (13%) Query 27 RQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGND--NT 84 R++ +G+ +LL + G++ L PV + D G + CG+ ++L+ A A+ N N Sbjct 2 RRLILGVGAVLL-LAGVIGLLAPVSIS--DGNGHSIGCGNAVATDLSAARSANNNSVANI 58 Query 85 QAL---------VTRCDTALLVRRAWAIPSVALGWLLVTGFLV 118 L V +C +++ RR W+IP +G + + G L+ Sbjct 59 PILNQVVPHTDYVAQCQSSVGSRRMWSIPLAVVGLIAIGGALL 101 >gi|118465784|ref|YP_881480.1| hypothetical protein MAV_2276 [Mycobacterium avium 104] gi|254774948|ref|ZP_05216464.1| hypothetical protein MaviaA2_09789 [Mycobacterium avium subsp. avium ATCC 25291] gi|118167071|gb|ABK67968.1| conserved hypothetical protein [Mycobacterium avium 104] Length=113 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/105 (30%), Positives = 52/105 (50%), Gaps = 18/105 (17%) Query 27 RQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQA 86 R++ IG+ +LL + G++ L PV + D G + CG+ ++L+ A A NDN+ A Sbjct 4 RRLIIGVGAVLL-LAGVIGLLAPVSVS--DGNGHSIGCGNAVVTDLSAARNA--NDNSVA 58 Query 87 -------------LVTRCDTALLVRRAWAIPSVALGWLLVTGFLV 118 V +C +++ RRAW IP LG + + L+ Sbjct 59 NVPILNQIVPHTDYVAQCQSSVGGRRAWTIPLAVLGIIAIGATLL 103 >gi|336461813|gb|EGO40669.1| hypothetical protein MAPs_26490 [Mycobacterium avium subsp. paratuberculosis S397] Length=113 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/105 (30%), Positives = 52/105 (50%), Gaps = 18/105 (17%) Query 27 RQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSNLTQALYADGNDNTQA 86 R++ IG+ +LL + G++ L PV + D G + CG+ ++L+ A A NDN+ A Sbjct 4 RRLIIGVGAVLL-LAGVIGLLAPVSVS--DGNGHSIGCGNAVVTDLSAARNA--NDNSVA 58 Query 87 -------------LVTRCDTALLVRRAWAIPSVALGWLLVTGFLV 118 V +C +++ RRAW IP LG + + L+ Sbjct 59 NVPVLNQIVPHTDYVAQCQSSVGGRRAWTIPLAVLGIIAIGATLL 103 >gi|206559568|ref|YP_002230329.1| putative O-antigen acetylase [Burkholderia cenocepacia J2315] gi|198035606|emb|CAR51493.1| putative O-antigen acetylase [Burkholderia cenocepacia J2315] Length=669 Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/73 (33%), Positives = 37/73 (51%), Gaps = 5/73 (6%) Query 19 RHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSN---LTQA 75 RH A R++F + +LLA G+ WF +Y D+Y G + G+G+ SN T+A Sbjct 77 RHFYARRIRRIFPALVVVLLATYGMG--WFSLYGDEYRELGKHIVAGAGFVSNWASWTEA 134 Query 76 LYADGNDNTQALV 88 Y D + L+ Sbjct 135 GYFDQTAEAKPLL 147 >gi|221210346|ref|ZP_03583326.1| acyltransferase 3 [Burkholderia multivorans CGD1] gi|221169302|gb|EEE01769.1| acyltransferase 3 [Burkholderia multivorans CGD1] Length=669 Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/73 (33%), Positives = 37/73 (51%), Gaps = 5/73 (6%) Query 19 RHGEAVNRRQMFIGITGLLLAVIGLMALWFPVYLDQYDAYGIKVTCGSGWRSN---LTQA 75 RH A R++F + +LLA G+ WF +Y D+Y G + G+G+ SN T+A Sbjct 77 RHFYARRIRRIFPALVVVLLATYGMG--WFSLYGDEYRELGKHIVAGAGFVSNWASWTEA 134 Query 76 LYADGNDNTQALV 88 Y D + L+ Sbjct 135 GYFDQAAEAKPLL 147 Lambda K H 0.325 0.137 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128858389450 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40