BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0426c

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15839813|ref|NP_334850.1|  hypothetical protein MT0441 [Mycoba...   269    1e-70
gi|308231548|ref|ZP_07412859.2|  transmembrane protein [Mycobacte...   267    4e-70
gi|289552675|ref|ZP_06441885.1|  transmembrane protein [Mycobacte...   266    7e-70
gi|15607567|ref|NP_214940.1|  hypothetical protein Rv0426c [Mycob...   266    9e-70
gi|340625451|ref|YP_004743903.1|  putative transmembrane protein ...   263    6e-69
gi|313657214|ref|ZP_07814094.1|  hypothetical protein MtubKV_0226...   239    1e-61
gi|167970757|ref|ZP_02553034.1|  hypothetical protein MtubH3_2306...   218    2e-55
gi|254818952|ref|ZP_05223953.1|  hypothetical protein MintA_03451...   147    4e-34
gi|41410013|ref|NP_962849.1|  hypothetical protein MAP3915c [Myco...   124    6e-27
gi|240168901|ref|ZP_04747560.1|  hypothetical protein MkanA1_0629...   119    2e-25
gi|254777167|ref|ZP_05218683.1|  hypothetical protein MaviaA2_212...   115    2e-24
gi|118464309|ref|YP_883855.1|  hypothetical protein MAV_4728 [Myc...   114    5e-24
gi|296165786|ref|ZP_06848294.1|  hypothetical protein HMPREF0591_...   114    6e-24
gi|342859083|ref|ZP_08715737.1|  hypothetical protein MCOL_09403 ...   109    1e-22
gi|15828040|ref|NP_302303.1|  hypothetical protein ML1932 [Mycoba...   100    5e-20
gi|118617058|ref|YP_905390.1|  transmembrane protein [Mycobacteri...  91.7    4e-17
gi|126433897|ref|YP_001069588.1|  hypothetical protein Mjls_1295 ...  67.8    5e-10
gi|111020134|ref|YP_703106.1|  hypothetical protein RHA1_ro03145 ...  62.4    2e-08
gi|226307567|ref|YP_002767527.1|  hypothetical protein RER_40800 ...  61.6    4e-08
gi|312139027|ref|YP_004006363.1|  hypothetical protein REQ_16010 ...  55.1    3e-06
gi|325673696|ref|ZP_08153387.1|  hypothetical protein HMPREF0724_...  55.1    4e-06
gi|226360941|ref|YP_002778719.1|  hypothetical protein ROP_15270 ...  53.5    9e-06
gi|120406740|ref|YP_956569.1|  putative transmembrane protein [My...  42.0    0.028
gi|334325559|ref|XP_001380453.2|  PREDICTED: desmoglein-2 [Monode...  39.3    0.21 


>gi|15839813|ref|NP_334850.1| hypothetical protein MT0441 [Mycobacterium tuberculosis CDC1551]
 gi|148821622|ref|YP_001286376.1| hypothetical protein TBFG_10431 [Mycobacterium tuberculosis F11]
 gi|253797350|ref|YP_003030351.1| hypothetical protein TBMG_00427 [Mycobacterium tuberculosis KZN 
1435]
 10 more sequence titles
 
gi|254230776|ref|ZP_04924103.1| hypothetical protein TBCG_00418 [Mycobacterium tuberculosis C]
 gi|289744122|ref|ZP_06503500.1| predicted protein [Mycobacterium tuberculosis 02_1987]
 gi|298523902|ref|ZP_07011311.1| hypothetical transmembrane protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|13879944|gb|AAK44664.1| hypothetical protein MT0441 [Mycobacterium tuberculosis CDC1551]
 gi|124599835|gb|EAY58845.1| hypothetical protein TBCG_00418 [Mycobacterium tuberculosis C]
 gi|148720149|gb|ABR04774.1| hypothetical transmembrane protein [Mycobacterium tuberculosis 
F11]
 gi|253318853|gb|ACT23456.1| transmembrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289684650|gb|EFD52138.1| predicted protein [Mycobacterium tuberculosis 02_1987]
 gi|298493696|gb|EFI28990.1| hypothetical transmembrane protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|328457136|gb|AEB02559.1| transmembrane protein [Mycobacterium tuberculosis KZN 4207]
Length=191

 Score =  269 bits (687),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 147/147 (100%), Positives = 147/147 (100%), Gaps = 0/147 (0%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA
Sbjct  45   MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  104

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120
            AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE
Sbjct  105  AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  164

Query  121  APAKASKTTARKTSGRRAGTAELRSTN  147
            APAKASKTTARKTSGRRAGTAELRSTN
Sbjct  165  APAKASKTTARKTSGRRAGTAELRSTN  191


>gi|308231548|ref|ZP_07412859.2| transmembrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308369390|ref|ZP_07417608.2| transmembrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308377419|ref|ZP_07479092.2| transmembrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308216871|gb|EFO76270.1| transmembrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308327715|gb|EFP16566.1| transmembrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308355827|gb|EFP44678.1| transmembrane protein [Mycobacterium tuberculosis SUMu009]
Length=171

 Score =  267 bits (682),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 147/147 (100%), Positives = 147/147 (100%), Gaps = 0/147 (0%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA
Sbjct  25   MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  84

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120
            AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE
Sbjct  85   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  144

Query  121  APAKASKTTARKTSGRRAGTAELRSTN  147
            APAKASKTTARKTSGRRAGTAELRSTN
Sbjct  145  APAKASKTTARKTSGRRAGTAELRSTN  171


>gi|289552675|ref|ZP_06441885.1| transmembrane protein [Mycobacterium tuberculosis KZN 605]
 gi|308370404|ref|ZP_07421382.2| transmembrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308371669|ref|ZP_07425749.2| transmembrane protein [Mycobacterium tuberculosis SUMu004]
 19 more sequence titles
 
gi|308372889|ref|ZP_07430281.2| transmembrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308374001|ref|ZP_07434468.2| transmembrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308375154|ref|ZP_07442903.2| transmembrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308376391|ref|ZP_07438691.2| transmembrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308378630|ref|ZP_07483287.2| transmembrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308379775|ref|ZP_07487522.2| transmembrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308395448|ref|ZP_07492023.2| transmembrane protein [Mycobacterium tuberculosis SUMu012]
 gi|289437307|gb|EFD19800.1| transmembrane protein [Mycobacterium tuberculosis KZN 605]
 gi|308332077|gb|EFP20928.1| transmembrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308335892|gb|EFP24743.1| transmembrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308339469|gb|EFP28320.1| transmembrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308343334|gb|EFP32185.1| transmembrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308347244|gb|EFP36095.1| transmembrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308351174|gb|EFP40025.1| transmembrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308359747|gb|EFP48598.1| transmembrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308363689|gb|EFP52540.1| transmembrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308367341|gb|EFP56192.1| transmembrane protein [Mycobacterium tuberculosis SUMu012]
 gi|339293477|gb|AEJ45588.1| hypothetical protein CCDC5079_0398 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297120|gb|AEJ49230.1| hypothetical protein CCDC5180_0393 [Mycobacterium tuberculosis 
CCDC5180]
Length=153

 Score =  266 bits (680),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 147/147 (100%), Positives = 147/147 (100%), Gaps = 0/147 (0%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA
Sbjct  7    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  66

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120
            AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE
Sbjct  67   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  126

Query  121  APAKASKTTARKTSGRRAGTAELRSTN  147
            APAKASKTTARKTSGRRAGTAELRSTN
Sbjct  127  APAKASKTTARKTSGRRAGTAELRSTN  153


>gi|15607567|ref|NP_214940.1| hypothetical protein Rv0426c [Mycobacterium tuberculosis H37Rv]
 gi|31791604|ref|NP_854097.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121636340|ref|YP_976563.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 34 more sequence titles
 
gi|148660191|ref|YP_001281714.1| hypothetical protein MRA_0431 [Mycobacterium tuberculosis H37Ra]
 gi|224988812|ref|YP_002643499.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|254363390|ref|ZP_04979436.1| hypothetical membrane protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254549373|ref|ZP_05139820.1| hypothetical protein Mtube_02748 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289441806|ref|ZP_06431550.1| transmembrane protein [Mycobacterium tuberculosis T46]
 gi|289445966|ref|ZP_06435710.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289568342|ref|ZP_06448569.1| transmembrane protein [Mycobacterium tuberculosis T17]
 gi|289573011|ref|ZP_06453238.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289748910|ref|ZP_06508288.1| transmembrane protein [Mycobacterium tuberculosis T92]
 gi|289752455|ref|ZP_06511833.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289756499|ref|ZP_06515877.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289760542|ref|ZP_06519920.1| transmembrane protein [Mycobacterium tuberculosis GM 1503]
 gi|294995931|ref|ZP_06801622.1| hypothetical protein Mtub2_15883 [Mycobacterium tuberculosis 
210]
 gi|297632910|ref|ZP_06950690.1| hypothetical protein MtubK4_02236 [Mycobacterium tuberculosis 
KZN 4207]
 gi|339630495|ref|YP_004722137.1| hypothetical protein MAF_04280 [Mycobacterium africanum GM041182]
 gi|1817692|emb|CAB06566.1| POSSIBLE TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31617190|emb|CAD93297.1| POSSIBLE TRANSMEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491987|emb|CAL70450.1| Possible transmembrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134148904|gb|EBA40949.1| hypothetical membrane protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504343|gb|ABQ72152.1| hypothetical protein MRA_0431 [Mycobacterium tuberculosis H37Ra]
 gi|224771925|dbj|BAH24731.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|289414725|gb|EFD11965.1| transmembrane protein [Mycobacterium tuberculosis T46]
 gi|289418924|gb|EFD16125.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537442|gb|EFD42020.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289542095|gb|EFD45744.1| transmembrane protein [Mycobacterium tuberculosis T17]
 gi|289689497|gb|EFD56926.1| transmembrane protein [Mycobacterium tuberculosis T92]
 gi|289693042|gb|EFD60471.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289708048|gb|EFD72064.1| transmembrane protein [Mycobacterium tuberculosis GM 1503]
 gi|289712063|gb|EFD76075.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|323721098|gb|EGB30160.1| transmembrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326902252|gb|EGE49185.1| transmembrane protein [Mycobacterium tuberculosis W-148]
 gi|339329851|emb|CCC25500.1| putative transmembrane protein [Mycobacterium africanum GM041182]
 gi|341600356|emb|CCC63026.1| possible transmembrane protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218242|gb|AEM98872.1| hypothetical protein MTCTRI2_0429 [Mycobacterium tuberculosis 
CTRI-2]
Length=147

 Score =  266 bits (680),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 147/147 (100%), Positives = 147/147 (100%), Gaps = 0/147 (0%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA
Sbjct  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120
            AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE
Sbjct  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120

Query  121  APAKASKTTARKTSGRRAGTAELRSTN  147
            APAKASKTTARKTSGRRAGTAELRSTN
Sbjct  121  APAKASKTTARKTSGRRAGTAELRSTN  147


>gi|340625451|ref|YP_004743903.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059]
 gi|340003641|emb|CCC42764.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059]
Length=147

 Score =  263 bits (672),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 146/147 (99%), Positives = 146/147 (99%), Gaps = 0/147 (0%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA
Sbjct  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120
            AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE
Sbjct  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120

Query  121  APAKASKTTARKTSGRRAGTAELRSTN  147
            APAKASKTTARKTSGRRAGTA LRSTN
Sbjct  121  APAKASKTTARKTSGRRAGTAALRSTN  147


>gi|313657214|ref|ZP_07814094.1| hypothetical protein MtubKV_02266 [Mycobacterium tuberculosis 
KZN V2475]
Length=133

 Score =  239 bits (610),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%)

Query  15   VSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGL  74
            +SGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGL
Sbjct  1    MSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGL  60

Query  75   VDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASKTTARKTS  134
            VDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASKTTARKTS
Sbjct  61   VDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASKTTARKTS  120

Query  135  GRRAGTAELRSTN  147
            GRRAGTAELRSTN
Sbjct  121  GRRAGTAELRSTN  133


>gi|167970757|ref|ZP_02553034.1| hypothetical protein MtubH3_23060 [Mycobacterium tuberculosis 
H37Ra]
 gi|297729885|ref|ZP_06959003.1| hypothetical protein MtubKR_02266 [Mycobacterium tuberculosis 
KZN R506]
Length=119

 Score =  218 bits (556),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  29   VGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGAL  88
            +GGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGAL
Sbjct  1    MGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGAL  60

Query  89   LLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASKTTARKTSGRRAGTAELRSTN  147
            LLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASKTTARKTSGRRAGTAELRSTN
Sbjct  61   LLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASKTTARKTSGRRAGTAELRSTN  119


>gi|254818952|ref|ZP_05223953.1| hypothetical protein MintA_03451 [Mycobacterium intracellulare 
ATCC 13950]
Length=157

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 88/157 (57%), Positives = 115/157 (74%), Gaps = 10/157 (6%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            M VV G VR+VGRT++ AA+ TT+ AGAVGGAAV+G+VGG+ GAA GIQ+G+S GSKST 
Sbjct  1    MGVVDGAVRSVGRTLNRAASVTTSTAGAVGGAAVNGVVGGIKGAADGIQQGISKGSKSTT  60

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAA--  118
            AAA+ +GA+G  GL++WP+LLAVGGGAL+L+++ R  + +APP +AKL  VP KP     
Sbjct  61   AAAVGLGALGAIGLIEWPVLLAVGGGALVLQRIARQQKESAPPSRAKLTTVPTKPEPEPQ  120

Query  119  --KEAPAKA------SKTTARKTSGRRAGTAELRSTN  147
              K  P KA      +   A+K +GRRAG+A LRSTN
Sbjct  121  TRKSPPQKAPTKRAAASKPAKKATGRRAGSAALRSTN  157


>gi|41410013|ref|NP_962849.1| hypothetical protein MAP3915c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398846|gb|AAS06465.1| hypothetical protein MAP_3915c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336460343|gb|EGO39243.1| hypothetical protein MAPs_41390 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=149

 Score =  124 bits (310),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 97/149 (66%), Positives = 122/149 (82%), Gaps = 2/149 (1%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            MSV+GG VR V + V+ AA+ATTAAAGAVGGAAV+G++GGVTGAA+G+++G++SGS ST 
Sbjct  1    MSVIGGAVRGVSQAVNRAASATTAAAGAVGGAAVNGVIGGVTGAAEGVKRGMNSGSHSTP  60

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAP-PVKAKLAPVPDKPAAAK  119
            AAALA GA+GVAGLV+WP+LLAVGGGALLL++LNR      P  VKA L  VP + A A+
Sbjct  61   AAALAFGALGVAGLVEWPVLLAVGGGALLLQRLNRKERQPEPRAVKANLKSVPAESAPAR  120

Query  120  EAPAK-ASKTTARKTSGRRAGTAELRSTN  147
            +APAK A+K+TA+K  GRRAG  +LRSTN
Sbjct  121  KAPAKTAAKSTAKKAPGRRAGAGDLRSTN  149


>gi|240168901|ref|ZP_04747560.1| hypothetical protein MkanA1_06290 [Mycobacterium kansasii ATCC 
12478]
Length=148

 Score =  119 bits (298),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 102/148 (69%), Positives = 121/148 (82%), Gaps = 1/148 (0%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            M VVGG VR+VGRTVS AAT TTAAAGAVGGAAV+G+VGGV GAA+G+Q+GLS+G+KST 
Sbjct  1    MGVVGGAVRSVGRTVSQAATVTTAAAGAVGGAAVNGVVGGVKGAAEGVQRGLSTGTKSTP  60

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120
            AAALAIGA+GV G+V+WPILLAVGGGALLLR++N+ P  + PPVKAKL  VP +    K 
Sbjct  61   AAALAIGALGVTGIVEWPILLAVGGGALLLRRMNKKPGDSGPPVKAKLTSVPSESEPEKA  120

Query  121  APAKAS-KTTARKTSGRRAGTAELRSTN  147
             P K + K  A+K SGRRAG+ ELRSTN
Sbjct  121  PPQKTTAKAPAKKASGRRAGSTELRSTN  148


>gi|254777167|ref|ZP_05218683.1| hypothetical protein MaviaA2_21209 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=139

 Score =  115 bits (288),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 72/115 (63%), Positives = 94/115 (82%), Gaps = 2/115 (1%)

Query  35   SGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKLN  94
            +G++GGVTGAA+G+++G++SGS ST AAALA GA+GVAGLV+WP+LLAVGGGALLL++LN
Sbjct  25   NGVIGGVTGAAEGVKRGMNSGSHSTPAAALAFGALGVAGLVEWPVLLAVGGGALLLQRLN  84

Query  95   RTPEVAAP-PVKAKLAPVPDKPAAAKEAPAK-ASKTTARKTSGRRAGTAELRSTN  147
            R  +   P  VKA L  VP + A A++APAK A+K+TA+K  GRRAG  +LRSTN
Sbjct  85   RKEQQPEPRAVKANLKSVPAESAPARKAPAKTAAKSTAKKAPGRRAGAGDLRSTN  139


>gi|118464309|ref|YP_883855.1| hypothetical protein MAV_4728 [Mycobacterium avium 104]
 gi|118165596|gb|ABK66493.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=139

 Score =  114 bits (285),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 72/115 (63%), Positives = 93/115 (81%), Gaps = 2/115 (1%)

Query  35   SGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKLN  94
            +G++GGVTGAA+G+++G++SGS ST AAALA GA+GVAGLV+WP+LLAVGGGALLL++LN
Sbjct  25   NGVIGGVTGAAEGVKRGMNSGSHSTPAAALAFGALGVAGLVEWPVLLAVGGGALLLQRLN  84

Query  95   RTPEVAAP-PVKAKLAPVPDKPAAAKEAPAK-ASKTTARKTSGRRAGTAELRSTN  147
            R      P  VKA L  VP + A A++APAK A+K+TA+K  GRRAG  +LRSTN
Sbjct  85   RKERQPEPRAVKANLKSVPAESAPARKAPAKTAAKSTAKKAPGRRAGAGDLRSTN  139


>gi|296165786|ref|ZP_06848294.1| hypothetical protein HMPREF0591_1735 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898859|gb|EFG78357.1| hypothetical protein HMPREF0591_1735 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=146

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 100/149 (68%), Positives = 122/149 (82%), Gaps = 5/149 (3%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            MSV+GG VR VG+ VS AAT TTAAAGAVGGAAV+G++GGVTGAA+GI+KG++SGS S  
Sbjct  1    MSVIGGAVRGVGQAVSRAATTTTAAAGAVGGAAVNGVIGGVTGAAEGIKKGMASGSHSAP  60

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPP--VKAKLAPVPDKPAAA  118
            AAA+A GA+GVAGLV+WP+LLAVGG ALLL++L+R  E   PP   KA L  VP +PA  
Sbjct  61   AAAVAFGALGVAGLVEWPVLLAVGGSALLLQRLSRKQE---PPKAAKASLKAVPVEPATQ  117

Query  119  KEAPAKASKTTARKTSGRRAGTAELRSTN  147
            K AP KA+K+TA+K +GRRAG+AELRSTN
Sbjct  118  KAAPQKAAKSTAKKATGRRAGSAELRSTN  146


>gi|342859083|ref|ZP_08715737.1| hypothetical protein MCOL_09403 [Mycobacterium colombiense CECT 
3035]
 gi|342133324|gb|EGT86527.1| hypothetical protein MCOL_09403 [Mycobacterium colombiense CECT 
3035]
Length=138

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 69/111 (63%), Positives = 88/111 (80%), Gaps = 1/111 (0%)

Query  38   VGGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTP  97
            +GGVTGAA+G+++G++SGS S  AAALA GA+GVAGLV+WP+LLAVGG ALLL++L+R  
Sbjct  28   IGGVTGAAEGVKRGMNSGSHSAPAAALAFGALGVAGLVEWPLLLAVGGSALLLQRLSRKQ  87

Query  98   EVAAPPVKAKLAPVPDKPAAAKEAPAKA-SKTTARKTSGRRAGTAELRSTN  147
            E     VKA L  VP +PA  K  PAK+ SK+TA+KT+GRRAG+  LRSTN
Sbjct  88   EAEPRAVKASLKAVPAEPAPQKSTPAKSPSKSTAKKTAGRRAGSTGLRSTN  138


>gi|15828040|ref|NP_302303.1| hypothetical protein ML1932 [Mycobacterium leprae TN]
 gi|221230517|ref|YP_002503933.1| hypothetical protein MLBr_01932 [Mycobacterium leprae Br4923]
 gi|13093593|emb|CAC30887.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933624|emb|CAR72029.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=137

 Score =  100 bits (250),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 84/139 (61%), Positives = 102/139 (74%), Gaps = 4/139 (2%)

Query  9    RTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAAALAIGA  68
            R +G+ VS AA ATTAAAGAVGGAAV+ IVGGVTGAA+G+++G+ +G  ST+ AAL +GA
Sbjct  3    RGLGKAVSRAAIATTAAAGAVGGAAVNSIVGGVTGAAEGVKRGIRTGRHSTSTAALVLGA  62

Query  69   IGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASKT  128
            +GVAGLV+WPILLAVGGGALLL K+   P+ AAP  KAKL PVP      K      SK 
Sbjct  63   LGVAGLVEWPILLAVGGGALLLSKMRPIPDPAAPEAKAKLKPVPTNSTQRKS----TSKP  118

Query  129  TARKTSGRRAGTAELRSTN  147
             A+KT+ RR  T EL+ TN
Sbjct  119  AAKKTTRRRTATTELQGTN  137


>gi|118617058|ref|YP_905390.1| transmembrane protein [Mycobacterium ulcerans Agy99]
 gi|183980765|ref|YP_001849056.1| transmembrane protein [Mycobacterium marinum M]
 gi|118569168|gb|ABL03919.1| transmembrane protein [Mycobacterium ulcerans Agy99]
 gi|183174091|gb|ACC39201.1| transmembrane protein [Mycobacterium marinum M]
Length=148

 Score = 91.7 bits (226),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 108/148 (73%), Positives = 125/148 (85%), Gaps = 1/148 (0%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            M VVGG VR VG+TV+ AATATTAAAGAVGGAAV+G+VGGV GAA+GIQ+GLS+GSKST 
Sbjct  1    MGVVGGAVRNVGQTVNRAATATTAAAGAVGGAAVNGVVGGVKGAAEGIQRGLSTGSKSTP  60

Query  61   AAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKLAPVPDKPAAAKE  120
            AAALA+GA+GVAG+V+WPILLAVGG ALLLR++++ PE +AP  KAKLAPVPD+   AK 
Sbjct  61   AAALAMGALGVAGIVEWPILLAVGGSALLLRRMSQRPEASAPAAKAKLAPVPDQEEPAKA  120

Query  121  APAKASKTTARKTS-GRRAGTAELRSTN  147
            AP KA   TA K S GRRAG AELRSTN
Sbjct  121  APQKAPAKTAAKKSTGRRAGAAELRSTN  148


>gi|126433897|ref|YP_001069588.1| hypothetical protein Mjls_1295 [Mycobacterium sp. JLS]
 gi|126233697|gb|ABN97097.1| hypothetical protein Mjls_1295 [Mycobacterium sp. JLS]
Length=122

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 33/52 (64%), Positives = 41/52 (79%), Gaps = 0/52 (0%)

Query  48  IQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEV  99
           I+ GLSSGS ST AA L +GA+G AGLVDWP+L AVGG ALL+R+L+   +V
Sbjct  44  IRHGLSSGSHSTPAALLTLGAVGAAGLVDWPVLAAVGGTALLVRQLDHNSDV  95


>gi|111020134|ref|YP_703106.1| hypothetical protein RHA1_ro03145 [Rhodococcus jostii RHA1]
 gi|110819664|gb|ABG94948.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=245

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 41/106 (39%), Positives = 58/106 (55%), Gaps = 9/106 (8%)

Query  39   GGVTGAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKL-----  93
            G + GA +G   G   G +ST  A   +GA+G AGLV+WPI+LA GG AL+LR+      
Sbjct  128  GSIRGAVEGAYDGAQYGRRSTPVALATLGAVGAAGLVEWPIVLAAGGTALVLRQFKPEPS  187

Query  94   NRT----PEVAAPPVKAKLAPVPDKPAAAKEAPAKASKTTARKTSG  135
            +R+    PE  + P   K+   P+ P A      +A +T + KTSG
Sbjct  188  DRSVKSKPEGVSSPSGPKVVSPPNGPTAVSSPSPRAKRTASGKTSG  233


>gi|226307567|ref|YP_002767527.1| hypothetical protein RER_40800 [Rhodococcus erythropolis PR4]
 gi|226186684|dbj|BAH34788.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=141

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 28/53 (53%), Positives = 40/53 (76%), Gaps = 0/53 (0%)

Query  43  GAAKGIQKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNR  95
           G A+G++ G+ +GS ST  A L + A+G AGLV+WP+LLAVGG AL+L + +R
Sbjct  39  GTAEGVRDGIRAGSSSTPTAVLTMAAVGAAGLVEWPVLLAVGGTALVLHEWDR  91


>gi|312139027|ref|YP_004006363.1| hypothetical protein REQ_16010 [Rhodococcus equi 103S]
 gi|311888366|emb|CBH47678.1| hypothetical protein REQ_16010 [Rhodococcus equi 103S]
Length=150

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 33/78 (43%), Positives = 48/78 (62%), Gaps = 7/78 (8%)

Query  49   QKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNRTPEVAAPPVKAKL  108
            ++GL  GS ST AA L + A G  GLV+WP++L VGG AL+LR+L+   E  AP   ++ 
Sbjct  71   RRGLERGSHSTPAAVLTMAAAGAVGLVEWPVVLTVGGAALVLRQLH---ERGAPTDGSRA  127

Query  109  APVPDKPAAAKEAPAKAS  126
                D+  A  ++ AK+S
Sbjct  128  ----DEAGAEDDSAAKSS  141


>gi|325673696|ref|ZP_08153387.1| hypothetical protein HMPREF0724_11169 [Rhodococcus equi ATCC 
33707]
 gi|325555717|gb|EGD25388.1| hypothetical protein HMPREF0724_11169 [Rhodococcus equi ATCC 
33707]
Length=128

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 25/47 (54%), Positives = 34/47 (73%), Gaps = 0/47 (0%)

Query  49  QKGLSSGSKSTAAAALAIGAIGVAGLVDWPILLAVGGGALLLRKLNR  95
           ++GL  GS ST AA L + A G  GLV+WP++L VGG AL+LR+L+ 
Sbjct  49  RRGLERGSHSTPAAVLTMAAAGAVGLVEWPVVLTVGGAALVLRQLHE  95


>gi|226360941|ref|YP_002778719.1| hypothetical protein ROP_15270 [Rhodococcus opacus B4]
 gi|226239426|dbj|BAH49774.1| hypothetical protein [Rhodococcus opacus B4]
Length=107

 Score = 53.5 bits (127),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 52/93 (56%), Positives = 66/93 (71%), Gaps = 4/93 (4%)

Query  1   MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
           M +V G V  V    +GAA ATT+A GAVGGAA+ G+V GV GAA G + G+ SGS ST 
Sbjct  1   MRIVDGAVNAV----TGAANATTSAVGAVGGAALGGVVCGVRGAASGARAGMESGSHSTP  56

Query  61  AAALAIGAIGVAGLVDWPILLAVGGGALLLRKL  93
           AAAL + A+G AGLV+WP+L+  GG AL+LR+ 
Sbjct  57  AAALTLAAVGAAGLVEWPVLVTAGGAALVLRQF  89


>gi|120406740|ref|YP_956569.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959558|gb|ABM16563.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
Length=145

 Score = 42.0 bits (97),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 32/71 (46%), Positives = 44/71 (62%), Gaps = 9/71 (12%)

Query  69   IGVAGLVDWPILLAVGGGALLLRKL-NRTPEVAAPPVKAKLAPVPDKPAAAKEAPAKASK  127
            IG AGLV+WP+L+ VGG AL++ +L  R  + AAP  +   AP P K  AA+  PAK ++
Sbjct  80   IGAAGLVEWPVLVTVGGAALVMHQLGQRARQPAAP--RQSTAP-PAKKTAAR--PAKTAR  134

Query  128  TTARKTSGRRA  138
             T    + RRA
Sbjct  135  KTT---ASRRA  142


>gi|334325559|ref|XP_001380453.2| PREDICTED: desmoglein-2 [Monodelphis domestica]
Length=1258

 Score = 39.3 bits (90),  Expect = 0.21, Method: Composition-based stats.
 Identities = 23/66 (35%), Positives = 31/66 (47%), Gaps = 0/66 (0%)

Query  3    VVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTAAA  62
            +  G  RTVG   + +   T  AAGA+ GA   G  G ++GA      G  SG+ +  AA
Sbjct  821  LTSGITRTVGSAGAMSGATTMGAAGAMSGATTMGAAGAMSGATTMGAAGAMSGATTMGAA  880

Query  63   ALAIGA  68
                GA
Sbjct  881  GAMSGA  886


 Score = 35.8 bits (81),  Expect = 2.1, Method: Composition-based stats.
 Identities = 26/83 (32%), Positives = 38/83 (46%), Gaps = 2/83 (2%)

Query  1    MSVVGGTVRTVGRTVSGAATATTAAAGAVGGAAVSGIVGGVTGAAKGIQKGLSSGSKSTA  60
            M+VV G        ++   T T  +AGA+ GA   G  G ++GA      G  SG+ +  
Sbjct  807  MTVVDGGWEEHRNLLTSGITRTVGSAGAMSGATTMGAAGAMSGATTMGAAGAMSGATTMG  866

Query  61   AAALAIGA--IGVAGLVDWPILL  81
            AA    GA  +G AG +    +L
Sbjct  867  AAGAMSGATTMGAAGAMSGATML  889



Lambda     K      H
   0.310    0.125    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131150363096




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40