BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0427c
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607568|ref|NP_214941.1| exodeoxyribonuclease III protein [M... 591 4e-167
gi|340625452|ref|YP_004743904.1| putative exodeoxyribonuclease I... 582 2e-164
gi|308375155|ref|ZP_07442904.2| exodeoxyribonuclease III protein... 554 6e-156
gi|298523903|ref|ZP_07011312.1| exodeoxyribonuclease III protein... 551 4e-155
gi|296165787|ref|ZP_06848295.1| exodeoxyribonuclease III [Mycoba... 504 4e-141
gi|240168902|ref|ZP_04747561.1| putative exodeoxyribonuclease II... 499 1e-139
gi|183980766|ref|YP_001849057.1| exodeoxyribonuclease III protei... 466 1e-129
gi|342859082|ref|ZP_08715736.1| exodeoxyribonuclease III [Mycoba... 461 6e-128
gi|333989041|ref|YP_004521655.1| exodeoxyribonuclease III protei... 452 3e-125
gi|118464012|ref|YP_883854.1| exodeoxyribonuclease III [Mycobact... 450 2e-124
gi|254818951|ref|ZP_05223952.1| exodeoxyribonuclease III [Mycoba... 448 5e-124
gi|254777166|ref|ZP_05218682.1| exodeoxyribonuclease III [Mycoba... 446 2e-123
gi|41410014|ref|NP_962850.1| hypothetical protein MAP3916c [Myco... 446 3e-123
gi|118617059|ref|YP_905391.1| exodeoxyribonuclease III protein X... 442 3e-122
gi|229493724|ref|ZP_04387508.1| exodeoxyribonuclease III [Rhodoc... 410 1e-112
gi|226304979|ref|YP_002764937.1| exodeoxyribonuclease III [Rhodo... 409 2e-112
gi|169631267|ref|YP_001704916.1| exodeoxyribonuclease III protei... 407 1e-111
gi|145220782|ref|YP_001131460.1| exodeoxyribonuclease III Xth [M... 405 5e-111
gi|120401745|ref|YP_951574.1| exodeoxyribonuclease III Xth [Myco... 403 2e-110
gi|118472074|ref|YP_885233.1| exodeoxyribonuclease III [Mycobact... 401 6e-110
gi|126433169|ref|YP_001068860.1| exodeoxyribonuclease III [Mycob... 400 2e-109
gi|108797547|ref|YP_637744.1| exodeoxyribonuclease III [Mycobact... 399 2e-109
gi|226361308|ref|YP_002779086.1| exodeoxyribonuclease III [Rhodo... 395 4e-108
gi|111019171|ref|YP_702143.1| DNA-(apurinic or apyrimidinic site... 395 4e-108
gi|312141216|ref|YP_004008552.1| exodeoxyribonuclease iii [Rhodo... 391 6e-107
gi|54027277|ref|YP_121519.1| putative exonuclease [Nocardia farc... 382 3e-104
gi|284993327|ref|YP_003411882.1| exodeoxyribonuclease III Xth [G... 379 3e-103
gi|325673954|ref|ZP_08153644.1| exodeoxyribonuclease III [Rhodoc... 375 4e-102
gi|72160662|ref|YP_288319.1| exodeoxyribonuclease III [Thermobif... 372 3e-101
gi|296393768|ref|YP_003658652.1| exodeoxyribonuclease III Xth [S... 372 4e-101
gi|317506931|ref|ZP_07964703.1| exodeoxyribonuclease III [Segnil... 369 4e-100
gi|152968141|ref|YP_001363925.1| exodeoxyribonuclease III Xth [K... 365 3e-99
gi|258653319|ref|YP_003202475.1| exodeoxyribonuclease III Xth [N... 364 7e-99
gi|163841804|ref|YP_001626209.1| exodeoxyribonuclease III [Renib... 362 3e-98
gi|319948313|ref|ZP_08022460.1| exodeoxyribonuclease III [Dietzi... 359 2e-97
gi|116668987|ref|YP_829920.1| exodeoxyribonuclease III [Arthroba... 358 7e-97
gi|119961356|ref|YP_946272.1| exodeoxyribonuclease III [Arthroba... 353 2e-95
gi|317126375|ref|YP_004100487.1| exodeoxyribonuclease III [Intra... 348 4e-94
gi|220911407|ref|YP_002486716.1| exodeoxyribonuclease III Xth [A... 347 1e-93
gi|184199810|ref|YP_001854017.1| exodeoxyribonuclease III [Kocur... 347 1e-93
gi|297563086|ref|YP_003682060.1| exodeoxyribonuclease III Xth [N... 343 2e-92
gi|309812281|ref|ZP_07706036.1| exodeoxyribonuclease III [Dermac... 342 5e-92
gi|311743284|ref|ZP_07717091.1| exodeoxyribonuclease III [Aeromi... 338 6e-91
gi|296128411|ref|YP_003635661.1| exodeoxyribonuclease III Xth [C... 335 4e-90
gi|333918224|ref|YP_004491805.1| exodeoxyribonuclease III Xth [A... 334 8e-90
gi|325961961|ref|YP_004239867.1| exodeoxyribonuclease III [Arthr... 334 1e-89
gi|308175988|ref|YP_003915394.1| exodeoxyribonuclease III [Arthr... 333 2e-89
gi|229822126|ref|YP_002883652.1| exodeoxyribonuclease III Xth [B... 332 4e-89
gi|336319408|ref|YP_004599376.1| exodeoxyribonuclease III Xth [C... 332 4e-89
gi|256833636|ref|YP_003162363.1| exodeoxyribonuclease III Xth [J... 331 6e-89
>gi|15607568|ref|NP_214941.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis
H37Rv]
gi|15839814|ref|NP_334851.1| exodeoxyribonuclease III [Mycobacterium tuberculosis CDC1551]
gi|31791605|ref|NP_854098.1| exodeoxyribonuclease III protein [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=291
Score = 591 bits (1524), Expect = 4e-167, Method: Compositional matrix adjust.
Identities = 291/291 (100%), Positives = 291/291 (100%), Gaps = 0/291 (0%)
Query 1 MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC 60
MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC
Sbjct 1 MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC 60
Query 61 PDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTE 120
PDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTE
Sbjct 61 PDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTE 120
Query 121 ARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD 180
ARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD
Sbjct 121 ARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD 180
Query 181 WNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL 240
WNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL
Sbjct 181 WNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL 240
Query 241 RFPKKQGMRIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLHAG 291
RFPKKQGMRIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLHAG
Sbjct 241 RFPKKQGMRIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLHAG 291
>gi|340625452|ref|YP_004743904.1| putative exodeoxyribonuclease III protein [Mycobacterium canettii
CIPT 140010059]
gi|340003642|emb|CCC42765.1| putative exodeoxyribonuclease III protein XTHA (exonuclease III)
(EXO III) (AP endonuclease VI) [Mycobacterium canettii CIPT
140010059]
Length=291
Score = 582 bits (1501), Expect = 2e-164, Method: Compositional matrix adjust.
Identities = 286/291 (99%), Positives = 289/291 (99%), Gaps = 0/291 (0%)
Query 1 MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC 60
MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC
Sbjct 1 MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC 60
Query 61 PDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTE 120
PDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEV A+TE
Sbjct 61 PDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVPASTE 120
Query 121 ARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD 180
ARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD
Sbjct 121 ARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD 180
Query 181 WNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL 240
WNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL
Sbjct 181 WNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL 240
Query 241 RFPKKQGMRIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLHAG 291
RFPKKQGMRIDFIL SPALAARV+DA+IVREERKGKAPSDHAPVLVDLHAG
Sbjct 241 RFPKKQGMRIDFILASPALAARVVDARIVREERKGKAPSDHAPVLVDLHAG 291
>gi|308375155|ref|ZP_07442904.2| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu007]
gi|308376392|ref|ZP_07438692.2| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu008]
gi|308347245|gb|EFP36096.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu007]
gi|308351175|gb|EFP40026.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu008]
gi|339293478|gb|AEJ45589.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
CCDC5079]
gi|339297121|gb|AEJ49231.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
CCDC5180]
Length=273
Score = 554 bits (1427), Expect = 6e-156, Method: Compositional matrix adjust.
Identities = 272/273 (99%), Positives = 273/273 (100%), Gaps = 0/273 (0%)
Query 19 LRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVA 78
+RSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVA
Sbjct 1 MRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVA 60
Query 79 HVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYV 138
HVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYV
Sbjct 61 HVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYV 120
Query 139 PNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAG 198
PNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAG
Sbjct 121 PNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAG 180
Query 199 CTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA 258
CTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA
Sbjct 181 CTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA 240
Query 259 LAARVMDAQIVREERKGKAPSDHAPVLVDLHAG 291
LAARVMDAQIVREERKGKAPSDHAPVLVDLHAG
Sbjct 241 LAARVMDAQIVREERKGKAPSDHAPVLVDLHAG 273
>gi|298523903|ref|ZP_07011312.1| exodeoxyribonuclease III protein XthA [Mycobacterium tuberculosis
94_M4241A]
gi|298493697|gb|EFI28991.1| exodeoxyribonuclease III protein XthA [Mycobacterium tuberculosis
94_M4241A]
Length=273
Score = 551 bits (1420), Expect = 4e-155, Method: Compositional matrix adjust.
Identities = 271/273 (99%), Positives = 272/273 (99%), Gaps = 0/273 (0%)
Query 19 LRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVA 78
+RS LLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVA
Sbjct 1 MRSALLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVA 60
Query 79 HVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYV 138
HVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYV
Sbjct 61 HVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYV 120
Query 139 PNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAG 198
PNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAG
Sbjct 121 PNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAG 180
Query 199 CTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA 258
CTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA
Sbjct 181 CTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA 240
Query 259 LAARVMDAQIVREERKGKAPSDHAPVLVDLHAG 291
LAARVMDAQIVREERKGKAPSDHAPVLVDLHAG
Sbjct 241 LAARVMDAQIVREERKGKAPSDHAPVLVDLHAG 273
>gi|296165787|ref|ZP_06848295.1| exodeoxyribonuclease III [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898860|gb|EFG78358.1| exodeoxyribonuclease III [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=322
Score = 504 bits (1299), Expect = 4e-141, Method: Compositional matrix adjust.
Identities = 247/283 (88%), Positives = 259/283 (92%), Gaps = 1/283 (0%)
Query 7 DGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFP 66
DGG PQRPASPR RSPL RLATWNVNSIR+RL RV+DWL RADVDVLAMQETKC DGQFP
Sbjct 39 DGGDPQRPASPRSRSPL-RLATWNVNSIRSRLPRVVDWLARADVDVLAMQETKCSDGQFP 97
Query 67 ALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGA 126
LP FELGY+VAHVGF+QWNGVAIASRVGLDDVRVGFDGQPSWS KPEVAAT EARALGA
Sbjct 98 TLPFFELGYEVAHVGFNQWNGVAIASRVGLDDVRVGFDGQPSWSSKPEVAATAEARALGA 157
Query 127 TCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPT 186
TC G+R+WSLYVPNGRAL DPHYTYKL+WLAALRDTA GWLRDDPAA IAL GDWNIAPT
Sbjct 158 TCDGVRIWSLYVPNGRALGDPHYTYKLEWLAALRDTAAGWLRDDPAAQIALAGDWNIAPT 217
Query 187 DDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQ 246
DDDVWSTEF+AG THVSEPER+AF AIVDAQFTDVVRPF PGPGVYTYWDYTQLRFPK+Q
Sbjct 218 DDDVWSTEFYAGATHVSEPERRAFAAIVDAQFTDVVRPFAPGPGVYTYWDYTQLRFPKRQ 277
Query 247 GMRIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLH 289
GMRIDFIL SPALA RV DAQIVREERKGKA SDHAPV +D+
Sbjct 278 GMRIDFILASPALADRVTDAQIVREERKGKAASDHAPVQIDIR 320
>gi|240168902|ref|ZP_04747561.1| putative exodeoxyribonuclease III protein [Mycobacterium kansasii
ATCC 12478]
Length=276
Score = 499 bits (1286), Expect = 1e-139, Method: Compositional matrix adjust.
Identities = 241/266 (91%), Positives = 253/266 (96%), Gaps = 0/266 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
LRLATWNVNSIRTRLDRVLDW+ RADVDVLAMQETKC DGQFPALPLFELGY+VAHVGFD
Sbjct 6 LRLATWNVNSIRTRLDRVLDWIARADVDVLAMQETKCADGQFPALPLFELGYEVAHVGFD 65
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVG+DDV+VGFDGQP+WS KPEVAAT EARALGATCGG+RVWSLYVPNGRA
Sbjct 66 QWNGVAIASRVGIDDVQVGFDGQPTWSRKPEVAATAEARALGATCGGVRVWSLYVPNGRA 125
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L DPHYTYKLDWLAAL+DTAEGWLRDDPAA IAL GDWNIAPTDDDVWSTEF+AG THVS
Sbjct 126 LGDPHYTYKLDWLAALKDTAEGWLRDDPAAAIALAGDWNIAPTDDDVWSTEFYAGATHVS 185
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPERKAFNAIVDAQF D+VRPF PGPGVYTYWDYTQLRFPK+QGMRIDFILGSPALA RV
Sbjct 186 EPERKAFNAIVDAQFADLVRPFAPGPGVYTYWDYTQLRFPKRQGMRIDFILGSPALARRV 245
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
+DAQIVREERKGKAPSDHAPV VD+
Sbjct 246 VDAQIVREERKGKAPSDHAPVFVDVR 271
>gi|183980766|ref|YP_001849057.1| exodeoxyribonuclease III protein XthA [Mycobacterium marinum
M]
gi|183174092|gb|ACC39202.1| exodeoxyribonuclease III protein XthA [Mycobacterium marinum
M]
Length=276
Score = 466 bits (1200), Expect = 1e-129, Method: Compositional matrix adjust.
Identities = 235/268 (88%), Positives = 253/268 (95%), Gaps = 0/268 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
LRLATWNVNSIRTRL RVLDWL RADVDVLA+QETKC D QFPALPLFELGY+VAHVGF+
Sbjct 6 LRLATWNVNSIRTRLPRVLDWLERADVDVLAIQETKCSDTQFPALPLFELGYEVAHVGFN 65
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVG+DDV++GFDGQP+WSGKPEVAA EARA+GATCGG+RVWSLYVPNGRA
Sbjct 66 QWNGVAIASRVGIDDVQIGFDGQPAWSGKPEVAAAAEARAVGATCGGVRVWSLYVPNGRA 125
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPHYTYKLDWLAALRDTA+ WL++DP APIAL GD+NIAPTD+DVWSTEFF G THVS
Sbjct 126 LEDPHYTYKLDWLAALRDTAQCWLKNDPGAPIALAGDFNIAPTDEDVWSTEFFTGATHVS 185
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPERKAFNAIVDAQFTD+VRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALA RV
Sbjct 186 EPERKAFNAIVDAQFTDLVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAGRV 245
Query 264 MDAQIVREERKGKAPSDHAPVLVDLHAG 291
+DAQIVR+ERKGKAPSDHAPV VDL G
Sbjct 246 VDAQIVRDERKGKAPSDHAPVFVDLRPG 273
>gi|342859082|ref|ZP_08715736.1| exodeoxyribonuclease III [Mycobacterium colombiense CECT 3035]
gi|342133323|gb|EGT86526.1| exodeoxyribonuclease III [Mycobacterium colombiense CECT 3035]
Length=279
Score = 461 bits (1186), Expect = 6e-128, Method: Compositional matrix adjust.
Identities = 231/289 (80%), Positives = 250/289 (87%), Gaps = 12/289 (4%)
Query 1 MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC 60
MPDGT D G+P LRLATWNVNSIR+RL RV+DWL RA+VDVLAMQETKC
Sbjct 1 MPDGTTDAGNP------------LRLATWNVNSIRSRLPRVIDWLARAEVDVLAMQETKC 48
Query 61 PDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTE 120
D QFP LP FELGY+VAHVGF+QWNGVAIASRVGLDDV++GFDGQP+WS KPEVAAT E
Sbjct 49 SDSQFPTLPFFELGYEVAHVGFNQWNGVAIASRVGLDDVQIGFDGQPTWSSKPEVAATAE 108
Query 121 ARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD 180
ARAL ATCGG+R+WSLYVPNGRAL DPHYTYKL+WLAALRD+AEGWLR+DP A IAL GD
Sbjct 109 ARALAATCGGVRMWSLYVPNGRALSDPHYTYKLEWLAALRDSAEGWLREDPGAAIALAGD 168
Query 181 WNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL 240
WNIAP DDDVWS EFF G THVSEPER+AF AIV+AQF DVVRPF PGPGVYTYWDYTQL
Sbjct 169 WNIAPHDDDVWSMEFFTGATHVSEPERRAFQAIVEAQFADVVRPFAPGPGVYTYWDYTQL 228
Query 241 RFPKKQGMRIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLH 289
RFPK+QGMRIDFILGSPALA RV DAQI REERKGKA SDHAPVL+D+
Sbjct 229 RFPKRQGMRIDFILGSPALAGRVTDAQIAREERKGKAASDHAPVLIDVR 277
>gi|333989041|ref|YP_004521655.1| exodeoxyribonuclease III protein XthA [Mycobacterium sp. JDM601]
gi|333485009|gb|AEF34401.1| exodeoxyribonuclease III protein XthA [Mycobacterium sp. JDM601]
Length=276
Score = 452 bits (1163), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 217/266 (82%), Positives = 237/266 (90%), Gaps = 1/266 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
LRLATWNVNSIRTR+ RV DWL RADVDVL MQETKC D QFP LP ELGY+VAHVG +
Sbjct 4 LRLATWNVNSIRTRVGRVTDWLARADVDVLTMQETKCTDVQFPTLPFHELGYEVAHVGHN 63
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLD V +GFDGQP+W+ K + T EARALGA+CGG+RVWSLYVPNGRA
Sbjct 64 QWNGVAIASRVGLDAVEIGFDGQPTWA-KADADPTVEARALGASCGGVRVWSLYVPNGRA 122
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPHYTYKL+WLAALRDTAEGWLRDDP+APIAL GDWNIAP DDDVWS EFF G THVS
Sbjct 123 LNDPHYTYKLEWLAALRDTAEGWLRDDPSAPIALTGDWNIAPQDDDVWSMEFFDGATHVS 182
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER+AF+A+ +AQ+ DVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALA RV
Sbjct 183 EPERRAFHALTEAQYLDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALATRV 242
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
A+IVREERKGK+PSDHAPVLVD+
Sbjct 243 AHAEIVREERKGKSPSDHAPVLVDIQ 268
>gi|118464012|ref|YP_883854.1| exodeoxyribonuclease III [Mycobacterium avium 104]
gi|118165299|gb|ABK66196.1| exodeoxyribonuclease III [Mycobacterium avium 104]
Length=272
Score = 450 bits (1157), Expect = 2e-124, Method: Compositional matrix adjust.
Identities = 224/268 (84%), Positives = 239/268 (90%), Gaps = 0/268 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR+RL RVLDWL R DVDVLAMQETKC DGQFP LP FELGY+VAHVGF+
Sbjct 1 MRLATWNVNSIRSRLPRVLDWLARTDVDVLAMQETKCADGQFPTLPFFELGYEVAHVGFN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDVRVGF+GQPSWSGKPEVAA EARAL ATC G+R+WSLYVPNGRA
Sbjct 61 QWNGVAIASRVGLDDVRVGFEGQPSWSGKPEVAAAAEARALAATCAGVRIWSLYVPNGRA 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+ DPHY YKLDWLAALRD+A GWLR+DPAA IAL GDWNIAP DDDVWS EFFAG THVS
Sbjct 121 VGDPHYAYKLDWLAALRDSAAGWLREDPAAQIALAGDWNIAPQDDDVWSMEFFAGATHVS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER+AFNAI+DAQF D+VRPF PGPGVYTYWDYT LRFPK+QGMRIDFILGSPALA RV
Sbjct 181 EPERRAFNAILDAQFADLVRPFAPGPGVYTYWDYTALRFPKRQGMRIDFILGSPALARRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDLHAG 291
AQI REERKGK SDHAPVLVD+ G
Sbjct 241 THAQIDREERKGKGASDHAPVLVDVSRG 268
>gi|254818951|ref|ZP_05223952.1| exodeoxyribonuclease III [Mycobacterium intracellulare ATCC 13950]
Length=268
Score = 448 bits (1152), Expect = 5e-124, Method: Compositional matrix adjust.
Identities = 224/266 (85%), Positives = 242/266 (91%), Gaps = 0/266 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNSIR+RL RVLDWL R DVDVLAMQETKC D QFP LP FELGY+VAHVGF+
Sbjct 1 MRIATWNVNSIRSRLPRVLDWLARTDVDVLAMQETKCSDSQFPTLPFFELGYEVAHVGFN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV++GFDGQP+WSGKPEVAA EARAL ATCGG+R+WSLYVPNGRA
Sbjct 61 QWNGVAIASRVGLDDVQIGFDGQPTWSGKPEVAAVAEARALAATCGGVRLWSLYVPNGRA 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L DPHY YKLDWLAALRD+AEGWLRDDP A IAL GDWNIAP DDDVWS EFFAG THVS
Sbjct 121 LGDPHYAYKLDWLAALRDSAEGWLRDDPGAAIALAGDWNIAPQDDDVWSMEFFAGATHVS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER+AFNAIV+AQFTD+VRPF PGPGVYTYWDYT+LRFPK+QGMRIDFILGSPALA+RV
Sbjct 181 APERRAFNAIVEAQFTDLVRPFAPGPGVYTYWDYTRLRFPKRQGMRIDFILGSPALASRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
DA+I REERKGKA SDHAPVLVDL
Sbjct 241 TDARIDREERKGKAASDHAPVLVDLR 266
>gi|254777166|ref|ZP_05218682.1| exodeoxyribonuclease III [Mycobacterium avium subsp. avium ATCC
25291]
Length=272
Score = 446 bits (1148), Expect = 2e-123, Method: Compositional matrix adjust.
Identities = 222/265 (84%), Positives = 237/265 (90%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR+RL RVLDWL R DVDVLAMQETKC DGQFP LP FELGY+VAHVGF+
Sbjct 1 MRLATWNVNSIRSRLPRVLDWLARTDVDVLAMQETKCADGQFPTLPFFELGYEVAHVGFN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDVRVGF+GQPSWSGKPEVAA EARAL ATC G+R+WSLYVPNGRA
Sbjct 61 QWNGVAIASRVGLDDVRVGFEGQPSWSGKPEVAAAAEARALAATCAGVRIWSLYVPNGRA 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+ DPHY YKLDWLAALRD+A GWLR+DPAA IAL GDWNIAP DDDVWS E FAG THVS
Sbjct 121 VGDPHYAYKLDWLAALRDSAAGWLREDPAAQIALAGDWNIAPQDDDVWSMEIFAGATHVS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER+AFNAI+DAQF D+VRPF PGPGVYTYWDYT LRFPK+QGMRIDFILGSPALA RV
Sbjct 181 EPERRAFNAILDAQFADLVRPFAPGPGVYTYWDYTALRFPKRQGMRIDFILGSPALARRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
AQI REERKGK SDHAPVLVD+
Sbjct 241 THAQIDREERKGKGASDHAPVLVDV 265
>gi|41410014|ref|NP_962850.1| hypothetical protein MAP3916c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398847|gb|AAS06466.1| XthA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460342|gb|EGO39242.1| exodeoxyribonuclease III [Mycobacterium avium subsp. paratuberculosis
S397]
Length=272
Score = 446 bits (1146), Expect = 3e-123, Method: Compositional matrix adjust.
Identities = 221/265 (84%), Positives = 237/265 (90%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR+RL RVLDWL R +VDVLAMQETKC DGQFP LP FELGY+VAHVGF+
Sbjct 1 MRLATWNVNSIRSRLPRVLDWLARTEVDVLAMQETKCADGQFPTLPFFELGYEVAHVGFN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDVRVGF+GQPSWSGKPEVAA EARAL ATC G+R+WSLYVPNGRA
Sbjct 61 QWNGVAIASRVGLDDVRVGFEGQPSWSGKPEVAAAAEARALAATCAGVRIWSLYVPNGRA 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+ DPHY YKLDWLAALRD+A WLR+DPAA IAL GDWNIAP DDDVWS EFFAG THVS
Sbjct 121 VGDPHYAYKLDWLAALRDSAAAWLREDPAAQIALAGDWNIAPQDDDVWSMEFFAGATHVS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER+AFNAI+DAQF D+VRPF PGPGVYTYWDYT LRFPK+QGMRIDFILGSPALA RV
Sbjct 181 EPERRAFNAILDAQFADLVRPFAPGPGVYTYWDYTALRFPKRQGMRIDFILGSPALARRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
AQI REERKGK SDHAPVLVD+
Sbjct 241 THAQIDREERKGKGASDHAPVLVDV 265
>gi|118617059|ref|YP_905391.1| exodeoxyribonuclease III protein XthA [Mycobacterium ulcerans
Agy99]
gi|118569169|gb|ABL03920.1| exodeoxyribonuclease III protein XthA [Mycobacterium ulcerans
Agy99]
Length=264
Score = 442 bits (1136), Expect = 3e-122, Method: Compositional matrix adjust.
Identities = 223/261 (86%), Positives = 243/261 (94%), Gaps = 0/261 (0%)
Query 31 VNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFDQWNGVAI 90
+NSIRTRL RVLDWL RADVDVLA+QETKC D QFPALPLFELGY+VAHVGF+QWNGVAI
Sbjct 1 MNSIRTRLPRVLDWLERADVDVLAIQETKCSDTQFPALPLFELGYEVAHVGFNQWNGVAI 60
Query 91 ASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRALDDPHYT 150
ASRVG+DDV++ FDGQP+WSGKPEVAA EARA+GATCGG+RVWSLYVPNGRAL+DPHYT
Sbjct 61 ASRVGIDDVQISFDGQPAWSGKPEVAAAAEARAVGATCGGVRVWSLYVPNGRALEDPHYT 120
Query 151 YKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVSEPERKAF 210
YKLDWLAALRDTA+ WL++DP APIAL GD+NIAPTD+DVW+TEFF G T VSEPERKAF
Sbjct 121 YKLDWLAALRDTAQCWLKNDPGAPIALAGDFNIAPTDEDVWNTEFFTGATRVSEPERKAF 180
Query 211 NAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARVMDAQIVR 270
NAIVDAQFTD+VRPFTPGPGVYTYW YTQLRFPKKQGMRIDFILGSPALA RV+DAQIVR
Sbjct 181 NAIVDAQFTDLVRPFTPGPGVYTYWYYTQLRFPKKQGMRIDFILGSPALAGRVVDAQIVR 240
Query 271 EERKGKAPSDHAPVLVDLHAG 291
+ERKGKAPSDHAPV VDL G
Sbjct 241 DERKGKAPSDHAPVFVDLRPG 261
>gi|229493724|ref|ZP_04387508.1| exodeoxyribonuclease III [Rhodococcus erythropolis SK121]
gi|229319393|gb|EEN85230.1| exodeoxyribonuclease III [Rhodococcus erythropolis SK121]
Length=266
Score = 410 bits (1054), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 194/265 (74%), Positives = 218/265 (83%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNS+R R DR++DWLGR+DVDVLAMQETKC D QFP E+GY+VAHVG
Sbjct 1 MRIATWNVNSVRARTDRIIDWLGRSDVDVLAMQETKCKDEQFPYERFKEIGYEVAHVGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV++GF+ QP + PE EARA+GATCGG+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLDDVQIGFEDQPGFDKDPEADPVREARAIGATCGGVRVWSLYVPNGRE 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPHY YKLDWLA LRD AEGWL+ DP A IAL+GDWN+APTDDDVW FF G TH S
Sbjct 121 LEDPHYAYKLDWLAKLRDDAEGWLKQDPDAQIALVGDWNVAPTDDDVWDPAFFEGKTHTS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER AF A ++ F DVVRP+TPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA AARV
Sbjct 181 EPERAAFTAFTESGFADVVRPYTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPAFAARV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A+I R ERKGK SDHAPV+V+L
Sbjct 241 EAAEIDRNERKGKGASDHAPVIVNL 265
>gi|226304979|ref|YP_002764937.1| exodeoxyribonuclease III [Rhodococcus erythropolis PR4]
gi|226184094|dbj|BAH32198.1| putative exodeoxyribonuclease III [Rhodococcus erythropolis PR4]
Length=266
Score = 409 bits (1052), Expect = 2e-112, Method: Compositional matrix adjust.
Identities = 194/265 (74%), Positives = 217/265 (82%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNS+R R DR++DWLGR+DVDVLAMQETKC D QFP E+GY+VAHVG
Sbjct 1 MRIATWNVNSVRARTDRIIDWLGRSDVDVLAMQETKCKDEQFPYERFKEIGYEVAHVGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV++GF+ QP + PE EARA+GATCGG+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLDDVQIGFEDQPGFDKDPEADPVREARAIGATCGGVRVWSLYVPNGRE 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPHY YKLDWLA LRD AEGWL+ DP A IAL+GDWN+APTDDDVW FF G TH S
Sbjct 121 LEDPHYAYKLDWLAKLRDDAEGWLKQDPDAQIALVGDWNVAPTDDDVWDPAFFEGKTHTS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER AF A ++ F DVVRP+TPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPA AARV
Sbjct 181 EPERAAFTAFTESGFADVVRPYTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPAFAARV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A+I R ERKGK SDHAPV+V L
Sbjct 241 EAAEIDRNERKGKGASDHAPVIVKL 265
>gi|169631267|ref|YP_001704916.1| exodeoxyribonuclease III protein XthA [Mycobacterium abscessus
ATCC 19977]
gi|169243234|emb|CAM64262.1| Probable exodeoxyribonuclease III protein XthA [Mycobacterium
abscessus]
Length=266
Score = 407 bits (1046), Expect = 1e-111, Method: Compositional matrix adjust.
Identities = 192/265 (73%), Positives = 214/265 (81%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR R DRV+ WL R+ DVLAMQETKC D QFP + GY+VAHVGF
Sbjct 1 MRLATWNVNSIRARADRVISWLERSGTDVLAMQETKCSDKQFPMQAFTDAGYEVAHVGFS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL+DV VGF+GQP WS ++ +EARALGATC G+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLEDVTVGFEGQPGWSSSEDIEEASEARALGATCNGVRVWSLYVPNGRT 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPHY YKL WL+ALRDTA GWL D P +AL+GDWNIAPTDDD+WS E + G THVS
Sbjct 121 LEDPHYQYKLRWLSALRDTAAGWLADAPDQQVALVGDWNIAPTDDDIWSVEAYQGSTHVS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER AF A+ DA F DVVRPFTPGPGVYTYWDYTQL FPKK+GMRIDF+LGSP A RV
Sbjct 181 EPERSAFTAMNDAGFADVVRPFTPGPGVYTYWDYTQLSFPKKRGMRIDFVLGSPEFAKRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
+A I REERKGK SDHAPV+VDL
Sbjct 241 GNAHIDREERKGKGASDHAPVVVDL 265
>gi|145220782|ref|YP_001131460.1| exodeoxyribonuclease III Xth [Mycobacterium gilvum PYR-GCK]
gi|315442264|ref|YP_004075143.1| exodeoxyribonuclease III [Mycobacterium sp. Spyr1]
gi|145213268|gb|ABP42672.1| Exodeoxyribonuclease III [Mycobacterium gilvum PYR-GCK]
gi|315260567|gb|ADT97308.1| Exodeoxyribonuclease III [Mycobacterium sp. Spyr1]
Length=272
Score = 405 bits (1040), Expect = 5e-111, Method: Compositional matrix adjust.
Identities = 201/270 (75%), Positives = 223/270 (83%), Gaps = 5/270 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR R+DRV DWL RADVDVLAMQETKC D QFP +P LGYDV H GF
Sbjct 1 MRLATWNVNSIRARVDRVTDWLERADVDVLAMQETKCSDEQFPTMPFAALGYDVVHCGFS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVG+D V VGF+GQP+WS KPE A EARALGATCGG+RVWSLYVPNGR+
Sbjct 61 QWNGVAIASRVGIDAVEVGFEGQPTWSDKPEAEAAAEARALGATCGGVRVWSLYVPNGRS 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+D PHYTYKL WLAAL +TA+GWL DDP+ P+AL+GDWNIAP DDDVW F+ THV+
Sbjct 121 IDSPHYTYKLKWLAALHNTAQGWLADDPSTPVALVGDWNIAPVDDDVWDISLFSESTHVT 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER AFNAIVDA FTDVVRPFTPGPG +TYWDYTQLRFPK +GMRIDFILGSP LA V
Sbjct 181 APERAAFNAIVDAGFTDVVRPFTPGPGTFTYWDYTQLRFPKNRGMRIDFILGSPTLAELV 240
Query 264 MDAQIVREERK-GK----APSDHAPVLVDL 288
A+I R+ERK GK +PSDHAPV+VDL
Sbjct 241 THAEIARDERKTGKNRVGSPSDHAPVVVDL 270
>gi|120401745|ref|YP_951574.1| exodeoxyribonuclease III Xth [Mycobacterium vanbaalenii PYR-1]
gi|119954563|gb|ABM11568.1| Exodeoxyribonuclease III [Mycobacterium vanbaalenii PYR-1]
Length=272
Score = 403 bits (1035), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 203/270 (76%), Positives = 227/270 (85%), Gaps = 5/270 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR R+DRV DWL RADVDVLAMQETKC D QFP +P LGY++ H GF+
Sbjct 1 MRLATWNVNSIRARVDRVTDWLERADVDVLAMQETKCSDDQFPTMPFAALGYEIVHCGFN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVG+DDV VGFDGQP+W+ KPEV A EARALGATCGG+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGIDDVEVGFDGQPTWNDKPEVEAAAEARALGATCGGVRVWSLYVPNGRT 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+D PHY YKL+WLAALRDTA WL +P+APIAL+GDWNIAP DDDVW F THV+
Sbjct 121 VDSPHYVYKLEWLAALRDTASSWLESNPSAPIALVGDWNIAPIDDDVWDISLFQDSTHVT 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER AFNA+VDA FTDVVRPFTPGPG +TYWDYTQLRFPK +GMRIDFILGSPALA RV
Sbjct 181 EPERAAFNAVVDAGFTDVVRPFTPGPGTFTYWDYTQLRFPKNRGMRIDFILGSPALAERV 240
Query 264 MDAQIVREERK-GK----APSDHAPVLVDL 288
+ A+I R+ERK GK +PSDHAPV+VDL
Sbjct 241 VHAEIARDERKTGKNRVGSPSDHAPVVVDL 270
>gi|118472074|ref|YP_885233.1| exodeoxyribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118173361|gb|ABK74257.1| exodeoxyribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length=260
Score = 401 bits (1031), Expect = 6e-110, Method: Compositional matrix adjust.
Identities = 199/266 (75%), Positives = 224/266 (85%), Gaps = 6/266 (2%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNSIR R+DRV DWL RADVDVLAMQETKC D +FPA+P ELGY+VA+ G +
Sbjct 1 MRVATWNVNSIRARVDRVTDWLARADVDVLAMQETKCSDDKFPAMPFVELGYEVAYHGLN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL++V++GFD QP+ A EARAL ATCGG+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLENVQLGFDNQPA------WEAAAEARALAATCGGVRVWSLYVPNGRT 114
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+D PHY YKL+WLAALRD A+ WL DDP A IAL GDWNIAPTD+DVW +FFAG THV+
Sbjct 115 VDSPHYAYKLEWLAALRDNAQKWLADDPQAQIALTGDWNIAPTDEDVWDIDFFAGSTHVT 174
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
E ER AF AIVDAQF DVVRPF PGPGVYTYWDYTQLRFPK+QGMRIDFILGSPA A RV
Sbjct 175 EKERAAFQAIVDAQFADVVRPFAPGPGVYTYWDYTQLRFPKRQGMRIDFILGSPAFAQRV 234
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
A+IVREERKGK+PSDHAPVLV+L+
Sbjct 235 GHAEIVREERKGKSPSDHAPVLVELN 260
>gi|126433169|ref|YP_001068860.1| exodeoxyribonuclease III [Mycobacterium sp. JLS]
gi|126232969|gb|ABN96369.1| Exodeoxyribonuclease III [Mycobacterium sp. JLS]
Length=267
Score = 400 bits (1027), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 199/265 (76%), Positives = 221/265 (84%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR R+DRV DWL RADVDVLAMQETKC D QFP +P LGYDV H GF+
Sbjct 1 MRLATWNVNSIRARVDRVTDWLERADVDVLAMQETKCNDEQFPTMPFAALGYDVVHCGFN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV VGFDGQP+W KP++ A EARALGATC G+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLDDVAVGFDGQPTWCDKPDIEAAAEARALGATCAGVRVWSLYVPNGRF 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+ PHY YKL+WLAALR TA GWL ++PA PIA++GDWNIAPTDDDVWS E + THV+
Sbjct 121 VGSPHYAYKLEWLAALRKTAHGWLTENPALPIAMVGDWNIAPTDDDVWSVEAYQDSTHVT 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER+AF IVDA + DVVRPFTPGPGVYTYWDYT+L F K++GMRIDFILGSPA A RV
Sbjct 181 PPERQAFTEIVDAGYADVVRPFTPGPGVYTYWDYTRLAFQKRRGMRIDFILGSPAFADRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A+IVREERKGK SDHAPVLVDL
Sbjct 241 THAEIVREERKGKGASDHAPVLVDL 265
>gi|108797547|ref|YP_637744.1| exodeoxyribonuclease III [Mycobacterium sp. MCS]
gi|119866633|ref|YP_936585.1| exodeoxyribonuclease III [Mycobacterium sp. KMS]
gi|108767966|gb|ABG06688.1| Exodeoxyribonuclease III [Mycobacterium sp. MCS]
gi|119692722|gb|ABL89795.1| Exodeoxyribonuclease III [Mycobacterium sp. KMS]
Length=267
Score = 399 bits (1026), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 199/265 (76%), Positives = 221/265 (84%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR R+DRV DWL RADVDVLAMQETKC D QFP +P LGYDV H GF+
Sbjct 1 MRLATWNVNSIRARVDRVTDWLERADVDVLAMQETKCNDEQFPTMPFAALGYDVVHCGFN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV VGFDGQP+W KP++ A EARALGATC G+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLDDVAVGFDGQPTWGDKPDIEAAAEARALGATCAGVRVWSLYVPNGRF 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+ PHY YKL+WLAALR TA GWL ++PA PIA++GDWNIAPTDDDVWS E + THV+
Sbjct 121 VGSPHYAYKLEWLAALRKTAHGWLTENPALPIAMVGDWNIAPTDDDVWSVEAYQDSTHVT 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER+AF IVDA + DVVRPFTPGPGVYTYWDYT+L F K++GMRIDFILGSPA A RV
Sbjct 181 PPERQAFTEIVDAGYADVVRPFTPGPGVYTYWDYTRLAFQKRRGMRIDFILGSPAFADRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A+IVREERKGK SDHAPVLVDL
Sbjct 241 THAEIVREERKGKGASDHAPVLVDL 265
>gi|226361308|ref|YP_002779086.1| exodeoxyribonuclease III [Rhodococcus opacus B4]
gi|226239793|dbj|BAH50141.1| putative exodeoxyribonuclease III [Rhodococcus opacus B4]
Length=267
Score = 395 bits (1015), Expect = 4e-108, Method: Compositional matrix adjust.
Identities = 190/265 (72%), Positives = 214/265 (81%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNS+R R DR+LDWL R+DVDVLA+QETKC D QFP ELGY+VAHVG
Sbjct 1 MRIATWNVNSVRARTDRILDWLQRSDVDVLAIQETKCKDEQFPYERFRELGYEVAHVGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV++GF+GQP + PEVA EARA+GATC G+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLDDVQIGFEGQPGFHKDPEVAPAQEARAIGATCNGVRVWSLYVPNGRE 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L DPHYTYKL+WLA L A GWL +P A IAL+GDWN+APTD+DVW F G TH S
Sbjct 121 LADPHYTYKLEWLAKLHTDAVGWLDRNPDAQIALVGDWNVAPTDEDVWDPALFEGKTHTS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER+AF A V++ F DVVRP TPGPGVYTYWDYTQLRFPKKQGMRIDF+LGSPALA RV
Sbjct 181 VPEREAFQAFVESGFADVVRPHTPGPGVYTYWDYTQLRFPKKQGMRIDFVLGSPALAGRV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A+I R ERKGK SDHAPV+VDL
Sbjct 241 DKAEIDRNERKGKGASDHAPVIVDL 265
>gi|111019171|ref|YP_702143.1| DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus jostii
RHA1]
gi|110818701|gb|ABG93985.1| probable DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus
jostii RHA1]
Length=270
Score = 395 bits (1015), Expect = 4e-108, Method: Compositional matrix adjust.
Identities = 189/265 (72%), Positives = 213/265 (81%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNS+R R DR+LDWL R+DVDVLAMQETKC D QFP ELGY+VAHVG
Sbjct 4 VRIATWNVNSVRARTDRILDWLQRSDVDVLAMQETKCKDEQFPYERFRELGYEVAHVGLS 63
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL+DV++GF+ QP + PEVA EARA+GATC G+R+WSLYVPNGR
Sbjct 64 QWNGVAIASRVGLEDVQIGFEDQPGFHKDPEVAPAQEARAIGATCNGVRIWSLYVPNGRE 123
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L DPHYTYKLDWLA L A GWL +P A IAL+GDWN+APTD+DVW F G TH S
Sbjct 124 LADPHYTYKLDWLAKLHTDAVGWLGQNPDAQIALVGDWNVAPTDEDVWDPALFEGKTHTS 183
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER+AF A V++ F DVVRP TPGPGVYTYWDYTQLRFPKKQGMRIDF+LGSPALA RV
Sbjct 184 APEREAFQAFVESGFADVVRPHTPGPGVYTYWDYTQLRFPKKQGMRIDFVLGSPALAGRV 243
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A+I R ERKGK SDHAPV+VDL
Sbjct 244 DKAEIDRNERKGKGASDHAPVIVDL 268
>gi|312141216|ref|YP_004008552.1| exodeoxyribonuclease iii [Rhodococcus equi 103S]
gi|311890555|emb|CBH49873.1| exodeoxyribonuclease III [Rhodococcus equi 103S]
Length=266
Score = 391 bits (1005), Expect = 6e-107, Method: Compositional matrix adjust.
Identities = 186/265 (71%), Positives = 212/265 (80%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNS+R R DR++DWL R D DVLAMQETKC D QFP E GY+VAHVG
Sbjct 1 MRIATWNVNSVRARTDRIVDWLARTDTDVLAMQETKCKDEQFPYERFTEAGYEVAHVGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASR+GL+DV+VGF QP ++ PE AT EARA+GAT GG+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRIGLEDVQVGFADQPGFNKDPEAEATREARAIGATVGGVRVWSLYVPNGRE 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L DPHY YKL+WLA LR AEGWL +P A IAL+GDWN+APTD+DVW FF G TH S
Sbjct 121 LTDPHYVYKLEWLAKLRADAEGWLAGNPDAQIALVGDWNVAPTDEDVWDPAFFEGKTHTS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
+PER AF+A +A F DVVRP TPGPGVYTYWDYTQLRFPK+QGMRID++LGSPA AARV
Sbjct 181 QPERDAFDAFAEAGFADVVRPHTPGPGVYTYWDYTQLRFPKRQGMRIDYVLGSPAFAARV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A I R+ERKGK SDHAPV+VDL
Sbjct 241 TGAHIDRDERKGKGASDHAPVVVDL 265
>gi|54027277|ref|YP_121519.1| putative exonuclease [Nocardia farcinica IFM 10152]
gi|54018785|dbj|BAD60155.1| putative exonuclease [Nocardia farcinica IFM 10152]
Length=303
Score = 382 bits (981), Expect = 3e-104, Method: Compositional matrix adjust.
Identities = 189/272 (70%), Positives = 212/272 (78%), Gaps = 4/272 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
LRLATWNVNSIR+RLDRV WL D+DVLAMQETKC D QFP ELGY+VAH+G +
Sbjct 7 LRLATWNVNSIRSRLDRVTTWLDEHDIDVLAMQETKCRDDQFPFERFAELGYEVAHLGVN 66
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPE----VAATTEARALGATCGGIRVWSLYVP 139
QWNGVAIASRVGL D+ F GQP + A E+RAL ATCGG+RVWSLYVP
Sbjct 67 QWNGVAIASRVGLADIAPAFPGQPGFDKDAADSLISAPVVESRALAATCGGVRVWSLYVP 126
Query 140 NGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGC 199
NGRALDDPHY YKL+WLAALR +A WL DPAA IAL+GDWNIAPTDDDVWS EFFAG
Sbjct 127 NGRALDDPHYAYKLEWLAALRASAADWLAADPAAKIALVGDWNIAPTDDDVWSVEFFAGK 186
Query 200 THVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPAL 259
TH S+PER AF AI+D F DV+RPF PGPGVYTYWDYT+LRFP+K+GMRIDF+L SPAL
Sbjct 187 THTSQPERDAFAAILDTGFADVMRPFAPGPGVYTYWDYTRLRFPRKEGMRIDFVLASPAL 246
Query 260 AARVMDAQIVREERKGKAPSDHAPVLVDLHAG 291
AA V+DA + RE RKGK SDHAPV+ + G
Sbjct 247 AATVVDAGVDREARKGKGASDHAPVIAEFDLG 278
>gi|284993327|ref|YP_003411882.1| exodeoxyribonuclease III Xth [Geodermatophilus obscurus DSM 43160]
gi|284066573|gb|ADB77511.1| exodeoxyribonuclease III Xth [Geodermatophilus obscurus DSM 43160]
Length=264
Score = 379 bits (974), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 188/266 (71%), Positives = 210/266 (79%), Gaps = 3/266 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNSIRTR DRV+ WL R+DVDVLA+QETKC D QFP +LGY VAHVG
Sbjct 1 MRIATWNVNSIRTRADRVVAWLQRSDVDVLALQETKCRDDQFPESCFTDLGYQVAHVGHS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVA+ SRVGL+DV V F GQP + G PE A EARAL ATCGG+RVWSLYVPNGR
Sbjct 61 QWNGVALLSRVGLEDVEVAFPGQPGF-GNPEPA--VEARALAATCGGVRVWSLYVPNGRT 117
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L DPHY YKL WL ALR A GWL +D A +AL+GDWNIAP DDDVW FA THVS
Sbjct 118 LTDPHYEYKLRWLGALRTAAAGWLAEDGGAQVALVGDWNIAPQDDDVWDVRVFAHSTHVS 177
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER AF AIVDA + DVVRP TPGPGV+TYWDYTQLRF +++GMRIDF+LGSPALA RV
Sbjct 178 EPERAAFRAIVDAGYADVVRPHTPGPGVFTYWDYTQLRFARREGMRIDFVLGSPALAVRV 237
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
+A I R+ERKGK SDHAPV+VDLH
Sbjct 238 TNALIDRQERKGKGASDHAPVVVDLH 263
>gi|325673954|ref|ZP_08153644.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
gi|325555219|gb|EGD24891.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
Length=259
Score = 375 bits (964), Expect = 4e-102, Method: Compositional matrix adjust.
Identities = 179/258 (70%), Positives = 204/258 (80%), Gaps = 0/258 (0%)
Query 31 VNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFDQWNGVAI 90
+NS+R R DR++DWL R D DVLAMQETKC D QFP E GY+VAHVG QWNGVAI
Sbjct 1 MNSVRARTDRIVDWLARTDTDVLAMQETKCKDEQFPYERFTEAGYEVAHVGLSQWNGVAI 60
Query 91 ASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRALDDPHYT 150
ASR+GL+DV+VGF QP ++ PE AT EARA+GAT GG+RVWSLYVPNGR L DPHY
Sbjct 61 ASRIGLEDVQVGFADQPGFNKDPEAEATREARAIGATVGGVRVWSLYVPNGRELTDPHYV 120
Query 151 YKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVSEPERKAF 210
YKL+WLA LR AEGWL +P A IAL+GDWN+APTD+DVW FF G TH S+PER AF
Sbjct 121 YKLEWLAKLRADAEGWLAGNPDAQIALVGDWNVAPTDEDVWDPAFFEGKTHTSQPERDAF 180
Query 211 NAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARVMDAQIVR 270
+A +A F DVVRP PGPGVYTYWDYTQLRFPK+QGMRID++LGSPA AARV A I R
Sbjct 181 DAFAEAGFADVVRPHAPGPGVYTYWDYTQLRFPKRQGMRIDYVLGSPAFAARVTGAHIDR 240
Query 271 EERKGKAPSDHAPVLVDL 288
+ERKGK SDHAPV+VDL
Sbjct 241 DERKGKGASDHAPVVVDL 258
>gi|72160662|ref|YP_288319.1| exodeoxyribonuclease III [Thermobifida fusca YX]
gi|71914394|gb|AAZ54296.1| Exodeoxyribonuclease III [Thermobifida fusca YX]
Length=264
Score = 372 bits (956), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 181/266 (69%), Positives = 206/266 (78%), Gaps = 4/266 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNS+R R +R+ WL R+DVDV+A+QETKC D QFP ELGY+VAH G
Sbjct 1 MRLATWNVNSVRARSERIAAWLRRSDVDVVALQETKCRDDQFPTAVFTELGYEVAHHGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL DV++GF GQP W G+PE A EARA+ A CGG+RVWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLSDVQIGFPGQPGW-GEPEEA---EARAISAVCGGVRVWSLYVPNGRE 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+D PHYTYKL WLA LR+ E WL +DP A IAL GDWNIAP D+DVW F G THV+
Sbjct 117 IDHPHYTYKLQWLARLREAGEAWLSEDPKAQIALCGDWNIAPYDEDVWDMAEFEGRTHVT 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
+PER AF+A+VDA FTDVVRP PGPGVYTYWDY L FPK++GMRIDFIL SPALA R
Sbjct 177 KPERDAFHAVVDAGFTDVVRPHAPGPGVYTYWDYKGLAFPKRKGMRIDFILASPALAERA 236
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
DA+I REERKGK SDHAPV+ D
Sbjct 237 TDAKIDREERKGKGASDHAPVIADFQ 262
>gi|296393768|ref|YP_003658652.1| exodeoxyribonuclease III Xth [Segniliparus rotundus DSM 44985]
gi|296180915|gb|ADG97821.1| exodeoxyribonuclease III Xth [Segniliparus rotundus DSM 44985]
Length=267
Score = 372 bits (954), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 179/266 (68%), Positives = 201/266 (76%), Gaps = 0/266 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWN+NSIR R DR + WL R+ VDVLA+QETKC + QFP P E GY VAH G
Sbjct 1 MRIATWNINSIRARADRAVAWLERSQVDVLALQETKCANAQFPEAPFREAGYAVAHTGNG 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAI SR+GL DVR+GFDGQP + PE A E RA+ ATCGG+R+WSLYVPNGR
Sbjct 61 QWNGVAIVSRLGLGDVRIGFDGQPGFHKDPEAPAEPEPRAIAATCGGVRIWSLYVPNGRD 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L D HY YKLDWLAAL+D AEGWL DP A IAL GDWNIAP D+DVW F G TH S
Sbjct 121 LADRHYRYKLDWLAALKDQAEGWLAADPEAKIALAGDWNIAPFDEDVWDPSLFEGKTHTS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER AF A A FTDV RP TPGPG+YTYWDYTQLRFP+++GMRIDF+LGSPALA V
Sbjct 181 APERAAFFAFEQAGFTDVARPHTPGPGLYTYWDYTQLRFPRREGMRIDFVLGSPALARAV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
A + REERKGK SDHAPV+VDL
Sbjct 241 QGASVDREERKGKGASDHAPVVVDLE 266
>gi|317506931|ref|ZP_07964703.1| exodeoxyribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316254859|gb|EFV14157.1| exodeoxyribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length=267
Score = 369 bits (946), Expect = 4e-100, Method: Compositional matrix adjust.
Identities = 179/265 (68%), Positives = 202/265 (77%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWN+NSIR R+DR + WL R+ VDVLA+QETKC D QFP P E GY VAH G
Sbjct 1 MRIATWNINSIRARVDRAVSWLERSQVDVLALQETKCADAQFPEEPFREAGYAVAHTGNG 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAI SR+GL DV+VGFDGQP + PE A E RA+ ATCGG+R+WSLYVPNGR
Sbjct 61 QWNGVAIVSRLGLADVQVGFDGQPGFHKDPEAEALPEPRAIAATCGGVRIWSLYVPNGRD 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L D HY YKL+WLAALR AEGWL D A IAL GDWNIAP D+DVW FF G TH S
Sbjct 121 LADRHYGYKLEWLAALRGQAEGWLAADADAKIALTGDWNIAPFDEDVWDPSFFDGKTHTS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER AF A + FTDV RP TPGPGVYTYWDYTQLRFP+++GMRIDF+LGSPALAA V
Sbjct 181 GPERDAFFAFEKSGFTDVARPHTPGPGVYTYWDYTQLRFPRREGMRIDFVLGSPALAASV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A + REERKGK SDHAPV+V+L
Sbjct 241 TGASVDREERKGKGASDHAPVVVEL 265
>gi|152968141|ref|YP_001363925.1| exodeoxyribonuclease III Xth [Kineococcus radiotolerans SRS30216]
gi|151362658|gb|ABS05661.1| exodeoxyribonuclease III Xth [Kineococcus radiotolerans SRS30216]
Length=266
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 179/265 (68%), Positives = 205/265 (78%), Gaps = 3/265 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNS+R RLDRVL W+ R+DVDV+A+QETKC D QFP +LGY+VAH G
Sbjct 1 MRLATWNVNSVRARLDRVLAWIDRSDVDVVALQETKCKDEQFPEQAFRDLGYEVAHHGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVA+ SRVGL+DV F G+P V EARA+GA CGG+RVWSLYVPNGR
Sbjct 61 QWNGVALLSRVGLEDVSTAFSPDVPRFGEPPV---VEARAVGALCGGVRVWSLYVPNGRG 117
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPHY YKL+WL LR+ GWL DPAA +AL+GD+NIAPTD+DVW E FAG THVS
Sbjct 118 LEDPHYPYKLEWLERLREAGRGWLAQDPAAQVALVGDFNIAPTDEDVWDPEAFAGATHVS 177
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER AF A+V+A F DVVRP PGPG YTYWDY QLRF K+QGMRIDF+LGSPALAARV
Sbjct 178 APERAAFTALVEAGFADVVRPHAPGPGTYTYWDYQQLRFAKRQGMRIDFVLGSPALAARV 237
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A I REERKGK SDHAPV+V+L
Sbjct 238 SGATIDREERKGKGASDHAPVVVEL 262
>gi|258653319|ref|YP_003202475.1| exodeoxyribonuclease III Xth [Nakamurella multipartita DSM 44233]
gi|258556544|gb|ACV79486.1| exodeoxyribonuclease III Xth [Nakamurella multipartita DSM 44233]
Length=264
Score = 364 bits (935), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 180/265 (68%), Positives = 207/265 (79%), Gaps = 4/265 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWN+NSIR R DRVL WL R+DVDVLA+QETK D +FP LGY VAH G +
Sbjct 1 MRIATWNINSIRARHDRVLAWLERSDVDVLAIQETKIDDARFPVESFERLGYRVAHHGTN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV+VG P++ P V EAR+LGA CGG+RVWSLYVPNGRA
Sbjct 61 QWNGVAIASRVGLDDVQVGVPDLPAFGEDPAV----EARSLGALCGGVRVWSLYVPNGRA 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+DDPHY YKL WLA LRD A L D+P P+ L GD+NIAPTDDD+WS E++ G THV+
Sbjct 117 VDDPHYHYKLHWLAVLRDYAAKQLADEPHLPMLLCGDFNIAPTDDDIWSVEYYQGSTHVT 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER+AF + DA FTDVVRPF PGPGVYTYWDYT+L FPK++GMRIDF L SPALAARV
Sbjct 177 GPERQAFANLTDAGFTDVVRPFHPGPGVYTYWDYTRLSFPKRRGMRIDFALASPALAARV 236
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
DAQI REERKGK SDHAPV+V+
Sbjct 237 TDAQIDREERKGKGSSDHAPVIVEF 261
>gi|163841804|ref|YP_001626209.1| exodeoxyribonuclease III [Renibacterium salmoninarum ATCC 33209]
gi|162955280|gb|ABY24795.1| exodeoxyribonuclease III [Renibacterium salmoninarum ATCC 33209]
Length=267
Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/267 (68%), Positives = 203/267 (77%), Gaps = 3/267 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+++ATWNVNS+R R DRV DWL R D+DVLA+QETKC D FP GY+VAH GF
Sbjct 1 MKIATWNVNSLRARADRVEDWLRRTDIDVLAIQETKCKDENFPWELFENNGYEVAHFGFS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIAS+VGLDDV F GQP++ GKP V E RA+ ATCGG+RVWSLYVPNGRA
Sbjct 61 QWNGVAIASKVGLDDVERTFPGQPAF-GKPGVEPEQEGRAIAATCGGVRVWSLYVPNGRA 119
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFF--AGCTH 201
LDDPH YKL+WL L + A+GWL DP A IAL+GDWNIAP DDDVW ++F G TH
Sbjct 120 LDDPHMPYKLEWLRVLNEEAKGWLAKDPNAQIALVGDWNIAPQDDDVWDVKYFIDEGLTH 179
Query 202 VSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAA 261
S PER AF A A FTDVVRP PGPGVYTYWDY QLRFPKK+GMRIDFI+ SPALAA
Sbjct 180 FSAPERAAFQAFEAAGFTDVVRPSHPGPGVYTYWDYKQLRFPKKEGMRIDFIMASPALAA 239
Query 262 RVMDAQIVREERKGKAPSDHAPVLVDL 288
RV+ +I REERKGK SDHAPV+ +L
Sbjct 240 RVVHTEIDREERKGKGASDHAPVIAEL 266
>gi|319948313|ref|ZP_08022460.1| exodeoxyribonuclease III [Dietzia cinnamea P4]
gi|319438033|gb|EFV93006.1| exodeoxyribonuclease III [Dietzia cinnamea P4]
Length=266
Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/265 (68%), Positives = 201/265 (76%), Gaps = 0/265 (0%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLATWNVNSIR R DRVL WL R+DVDVLAMQETKC D QFP ELGY+VAH G
Sbjct 1 MRLATWNVNSIRARKDRVLAWLDRSDVDVLAMQETKCKDEQFPEEDFRELGYEVAHHGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVA+ASRVGL+DVR+GFDG P + PE + EARA+ A C G+RV+SLYVPNGR
Sbjct 61 QWNGVAVASRVGLEDVRLGFDGMPGFHKDPEQSQDPEARAISAVCDGVRVYSLYVPNGRE 120
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L DPHYTYKL+WLA LRD A L DP A +AL+GDWN+AP D+DVW E F G THVS
Sbjct 121 LSDPHYTYKLEWLARLRDHAAAELVADPDAQVALVGDWNVAPLDEDVWDMEVFEGKTHVS 180
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
PER A A A F +V R +TPGPGVYTYWDYT L FPK++GMRIDF L SPALAARV
Sbjct 181 GPERLAVAAFDGAGFREVTREYTPGPGVYTYWDYTGLSFPKRKGMRIDFQLHSPALAARV 240
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A I REERKGK SDHAPV+V+L
Sbjct 241 TGAFIDREERKGKGASDHAPVVVEL 265
>gi|116668987|ref|YP_829920.1| exodeoxyribonuclease III [Arthrobacter sp. FB24]
gi|116609096|gb|ABK01820.1| Exodeoxyribonuclease III [Arthrobacter sp. FB24]
Length=294
Score = 358 bits (918), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 182/280 (65%), Positives = 205/280 (74%), Gaps = 3/280 (1%)
Query 11 PQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPL 70
P PA + +++ATWNVNS+R R DRV WL R+D DVLA+QETKC D FP
Sbjct 14 PLSPAPKFGKLGTVKIATWNVNSLRARADRVEAWLERSDCDVLAIQETKCKDDNFPWELF 73
Query 71 FELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGG 130
+GY+VAH G QWNGVAI SRVGL+DV F QP + GK A EARA+GATCGG
Sbjct 74 ERMGYEVAHFGVSQWNGVAIVSRVGLEDVERSFVDQPVF-GKNGKDAIQEARAIGATCGG 132
Query 131 IRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDV 190
+RVWSLYVPNGRALDD H YKL WL L+ A+ W+ ++P A IALMGDWNIAP DDDV
Sbjct 133 VRVWSLYVPNGRALDDEHMPYKLSWLDMLKTHAQAWVTENPEAQIALMGDWNIAPQDDDV 192
Query 191 WSTEFF--AGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGM 248
W +FF THVSEPER AF A DA F DVVRP TPGPGVYTYWDYTQLRFPKK+GM
Sbjct 193 WDIDFFRANAMTHVSEPERAAFRAFEDAGFQDVVRPHTPGPGVYTYWDYTQLRFPKKEGM 252
Query 249 RIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDL 288
RIDF+L SPALAARV A I REERKGK SDHAPV+V+L
Sbjct 253 RIDFVLASPALAARVTGASIDREERKGKGASDHAPVIVEL 292
>gi|119961356|ref|YP_946272.1| exodeoxyribonuclease III [Arthrobacter aurescens TC1]
gi|119948215|gb|ABM07126.1| exodeoxyribonuclease III [Arthrobacter aurescens TC1]
Length=268
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 176/267 (66%), Positives = 202/267 (76%), Gaps = 3/267 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+++ATWNVNS+R R DRV WL R+D DVLA+QETKC D FP +GY+VAH G +
Sbjct 1 MKIATWNVNSLRARADRVEAWLERSDCDVLAIQETKCKDENFPWELFERMGYEVAHFGVN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGLDDV+ F QP++ GK EARA+ ATCGGIR+WSLYVPNGR+
Sbjct 61 QWNGVAIASRVGLDDVQRTFLDQPAF-GKAGKDPAQEARAIAATCGGIRIWSLYVPNGRS 119
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFF--AGCTH 201
LDD H YK+ WL L+ A W++ +P A IALMGDWNIAP DDDVW E F TH
Sbjct 120 LDDEHMPYKIKWLDVLQGHAAEWVKSEPTAQIALMGDWNIAPFDDDVWDIELFRNNNYTH 179
Query 202 VSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAA 261
VSEPER AF+A A FTDVVRP+TPGPGVYTYWDYTQLRFPKK+GMRIDF L SPALA+
Sbjct 180 VSEPERAAFHAFETAGFTDVVRPYTPGPGVYTYWDYTQLRFPKKEGMRIDFCLASPALAS 239
Query 262 RVMDAQIVREERKGKAPSDHAPVLVDL 288
RV A I REERKGK SDHAPV+V+L
Sbjct 240 RVTGASIDREERKGKGASDHAPVIVEL 266
>gi|317126375|ref|YP_004100487.1| exodeoxyribonuclease III [Intrasporangium calvum DSM 43043]
gi|315590463|gb|ADU49760.1| Exodeoxyribonuclease III [Intrasporangium calvum DSM 43043]
Length=263
Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 176/266 (67%), Positives = 199/266 (75%), Gaps = 4/266 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNSIR+R+DRV DWL R+DVDVLA+QETK + QFP ELGY+VAH G
Sbjct 1 MRIATWNVNSIRSRVDRVTDWLVRSDVDVLALQETKAREDQFPHDRFRELGYEVAHHGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAI SRVG++DVRVGFDG P W G P A AL CGG+R+WSLY+PNGR
Sbjct 61 QWNGVAIVSRVGIEDVRVGFDGMPGW-GDPAAAEARAIGAL---CGGVRIWSLYIPNGRT 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPH YKLDWLAAL D WL DDP+APIAL+GDWNIAP D+DVWS F+ G TH S
Sbjct 117 LEDPHLLYKLDWLAALADAGRSWLADDPSAPIALLGDWNIAPFDEDVWSVPFYEGRTHTS 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
ER AF A+VDA F DVVRP PGPGVYTYWDY QLRF K +GMRIDF L SPALA RV
Sbjct 177 PRERAAFQAVVDAGFADVVRPHCPGPGVYTYWDYVQLRFQKGRGMRIDFALCSPALARRV 236
Query 264 MDAQIVREERKGKAPSDHAPVLVDLH 289
A I RE RKGK SDHAPV+ ++
Sbjct 237 TGAAIDREARKGKGASDHAPVVFEIE 262
>gi|220911407|ref|YP_002486716.1| exodeoxyribonuclease III Xth [Arthrobacter chlorophenolicus A6]
gi|219858285|gb|ACL38627.1| exodeoxyribonuclease III Xth [Arthrobacter chlorophenolicus A6]
Length=268
Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/267 (65%), Positives = 202/267 (76%), Gaps = 3/267 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+++ATWNVNS+R R DRV WL R+D DVLA+QETKC D FP +GY+VAH G +
Sbjct 1 MKIATWNVNSLRARADRVEAWLQRSDCDVLAIQETKCKDDNFPWELFERMGYEVAHFGVN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL+DV F QP++ GK EARA+ ATCGG+R+WSLY+PNGR+
Sbjct 61 QWNGVAIASRVGLEDVERTFLDQPAF-GKAGKDPVQEARAMAATCGGVRIWSLYIPNGRS 119
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFA--GCTH 201
LDD H YKL WL +L+ A+ + ++P A +ALMGDWNIAP DDDVW + F G TH
Sbjct 120 LDDEHMPYKLKWLESLKSHAQSLVTENPEAQVALMGDWNIAPFDDDVWDIDLFVNNGYTH 179
Query 202 VSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAA 261
VS PER AF+A A FTDVVRP+TPGPGVYTYWDYTQLRFPKK+GMRIDF+L S ALA+
Sbjct 180 VSPPERAAFHAFETAGFTDVVRPYTPGPGVYTYWDYTQLRFPKKEGMRIDFVLASKALAS 239
Query 262 RVMDAQIVREERKGKAPSDHAPVLVDL 288
RV A I REERKGK SDHAPVLV+L
Sbjct 240 RVTGASIDREERKGKGASDHAPVLVEL 266
>gi|184199810|ref|YP_001854017.1| exodeoxyribonuclease III [Kocuria rhizophila DC2201]
gi|183580040|dbj|BAG28511.1| exodeoxyribonuclease III [Kocuria rhizophila DC2201]
Length=268
Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/269 (67%), Positives = 207/269 (77%), Gaps = 6/269 (2%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFEL-GYDVAHVGF 82
+R+ATWNVNSIR R DR+ WL R+DVDVLA+QETK D FP LFE GY+VAH G
Sbjct 1 MRIATWNVNSIRARADRIEAWLDRSDVDVLAIQETKAKDENFP-WELFEFAGYEVAHFGV 59
Query 83 DQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGR 142
+QWNGVAIASRVGL DV+ F QP++ GKP EARA+GATCGG+RVWSLYVPNGR
Sbjct 60 NQWNGVAIASRVGLTDVQRTFPDQPTF-GKPGQEPAQEARAIGATCGGVRVWSLYVPNGR 118
Query 143 ALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFF--AGCT 200
LDDPH YKL+WL L A+ WL++DP A IAL+GDWN+AP DDDVW + F G T
Sbjct 119 GLDDPHMPYKLEWLRVLEGHAKQWLQEDPDAQIALVGDWNVAPQDDDVWDIQLFKEGGYT 178
Query 201 HVSEPERKAFNAIV-DAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPAL 259
HVSEPER AF+A + DA + DVVRP PGPGVYTYWDY QLRFPKK+GMRIDF L SPAL
Sbjct 179 HVSEPERAAFHAFIEDAGYQDVVRPRHPGPGVYTYWDYKQLRFPKKEGMRIDFQLCSPAL 238
Query 260 AARVMDAQIVREERKGKAPSDHAPVLVDL 288
AARV DA I R+ERKGK SDHAPV++++
Sbjct 239 AARVQDAWIDRDERKGKGASDHAPVVIEI 267
>gi|297563086|ref|YP_003682060.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847534|gb|ADH69554.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=275
Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/265 (65%), Positives = 200/265 (76%), Gaps = 4/265 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNS R R +R+ WL R+DVDVLA+QETK D QFPA L + GY+VAH G
Sbjct 1 MRIATWNVNSARARAERIGAWLDRSDVDVLAIQETKARDDQFPASVLTDRGYEVAHHGLS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL+DVR+GF GQP + G PE A EARA+GATCGG++VWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLEDVRIGFPGQPGY-GDPEEA---EARAIGATCGGVQVWSLYVPNGRE 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+D PHY YKL WL ALR+ L DP A IA +GD+NIAP D+DVW F G THV+
Sbjct 117 VDHPHYAYKLRWLEALREAGAASLAADPGAQIAYVGDFNIAPRDEDVWDMAAFEGSTHVT 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
EPER AF+ +V A F +VVR +TPGPGVYTYWDY L FPK++GMRIDF+L SPAL RV
Sbjct 177 EPERVAFDKLVGAGFDEVVRAYTPGPGVYTYWDYKGLAFPKRRGMRIDFVLASPALRDRV 236
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A I REERKGK SDHAPV+V L
Sbjct 237 SGASIDREERKGKGASDHAPVIVGL 261
>gi|309812281|ref|ZP_07706036.1| exodeoxyribonuclease III [Dermacoccus sp. Ellin185]
gi|308433586|gb|EFP57463.1| exodeoxyribonuclease III [Dermacoccus sp. Ellin185]
Length=262
Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/265 (65%), Positives = 197/265 (75%), Gaps = 4/265 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNSIRTR+DRV+ +L R DVDVLAMQETKC D QFP E GY+VAH G +
Sbjct 1 MRIATWNVNSIRTRVDRVIAFLERGDVDVLAMQETKCKDEQFPMARFEEAGYEVAHHGLN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL+DV++GF+ P + G P A A TC G+R+WSLYVPNGR
Sbjct 61 QWNGVAIASRVGLEDVQIGFEDMPGF-GDPIAAEARAIAA---TCDGVRMWSLYVPNGRE 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+ PHY YKLDWLAALR E WL ++P A IAL GDWNIAP D+DVW FF G THV+
Sbjct 117 IGHPHYEYKLDWLAALRADGEKWLTENPEAQIALTGDWNIAPRDEDVWDPAFFEGKTHVT 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
+PER AF A++D + DVVRP T P YTYWDYTQLRFPKKQGMRIDF L SPALA RV
Sbjct 177 QPERDAFQAMIDTGYADVVRPHTNEPRTYTYWDYTQLRFPKKQGMRIDFALCSPALAGRV 236
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A I R+ERKGK SDHAPV+V L
Sbjct 237 QGAVIDRDERKGKGASDHAPVIVQL 261
>gi|311743284|ref|ZP_07717091.1| exodeoxyribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313352|gb|EFQ83262.1| exodeoxyribonuclease III [Aeromicrobium marinum DSM 15272]
Length=254
Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 170/259 (66%), Positives = 195/259 (76%), Gaps = 7/259 (2%)
Query 31 VNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFDQWNGVAI 90
+NSIR+R+DRV+ +L R DVDVLA+QETKC + QFP L L LGY+ AH G +QWNGVAI
Sbjct 1 MNSIRSRIDRVVGFLERHDVDVLAIQETKCREDQFPGLELSALGYEYAHAGLNQWNGVAI 60
Query 91 ASRVGLDDVRVGF-DGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRALDDPHY 149
SRVGLDDV F D QP++ A E R++GATCGG+RVWSLYVPNGR LD HY
Sbjct 61 VSRVGLDDVATTFADDQPTF------ADVLEPRSIGATCGGVRVWSLYVPNGRELDHDHY 114
Query 150 TYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVSEPERKA 209
YKL WL LR+ + WL DP A IAL GDWN+AP D+DVW FAG THVSEPER A
Sbjct 115 VYKLAWLDRLREAGQEWLAADPDAQIALTGDWNVAPQDEDVWDMAAFAGSTHVSEPERAA 174
Query 210 FNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARVMDAQIV 269
F A+VDA + DVVRP TPGPGVYT+WDY QLRFPK++GMRIDF L SPALAARV I
Sbjct 175 FRAVVDAGYADVVRPHTPGPGVYTFWDYQQLRFPKREGMRIDFQLCSPALAARVEKGWID 234
Query 270 REERKGKAPSDHAPVLVDL 288
REERKGK SDHAPV++DL
Sbjct 235 REERKGKGASDHAPVVIDL 253
>gi|296128411|ref|YP_003635661.1| exodeoxyribonuclease III Xth [Cellulomonas flavigena DSM 20109]
gi|296020226|gb|ADG73462.1| exodeoxyribonuclease III Xth [Cellulomonas flavigena DSM 20109]
Length=264
Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/265 (63%), Positives = 194/265 (74%), Gaps = 4/265 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+ LATWN+NSIR R+DR + +L R VDVLA+QETK D FP P LGY+VA G+
Sbjct 1 MLLATWNINSIRARVDRAVAFLERTGVDVLALQETKVKDEAFPREPFEALGYEVATHGYS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAI SRVGL DV GF GQP+W G P VA EARALGATCGG+RVWSLYVPNGR
Sbjct 61 QWNGVAIVSRVGLTDVERGFPGQPTW-GDPGVA---EARALGATCGGVRVWSLYVPNGRE 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
++DPHYTYKLDWL ALRD AEGWL DP A +AL+GDWNIAP D DVW FAG THV+
Sbjct 117 IEDPHYTYKLDWLGALRDAAEGWLTADPRAQVALVGDWNIAPLDTDVWDIARFAGRTHVT 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
ER+AF A+ A +++V R P YTYWDY QLRFP+ +GMRID SP LAARV
Sbjct 177 PAERQAFEALAHAGYSEVSRVHVPAEHTYTYWDYQQLRFPRNEGMRIDLTYASPTLAARV 236
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
+I R+ERKGK PSDH PV++++
Sbjct 237 TGVRIERDERKGKQPSDHVPVVLEI 261
>gi|333918224|ref|YP_004491805.1| exodeoxyribonuclease III Xth [Amycolicicoccus subflavus DQS3-9A1]
gi|333480445|gb|AEF39005.1| Exodeoxyribonuclease III Xth [Amycolicicoccus subflavus DQS3-9A1]
Length=260
Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 163/265 (62%), Positives = 196/265 (74%), Gaps = 8/265 (3%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNS R R+DR+ WL R+DVDVLA+QETKC D QFPAL E+GY+VAH G +
Sbjct 1 MRIATWNVNSARARIDRITSWLSRSDVDVLAIQETKCRDDQFPALAFEEIGYEVAHHGTN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAIASRVGL +++GF GQP++ + E RA+GA CGG+ VWSLYVPNGR
Sbjct 61 QWNGVAIASRVGLSRLQIGFPGQPAFRDQ------LEPRAIGADCGGVTVWSLYVPNGRT 114
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
LDDPHY YKL WL AL D + WL P+AL+GDWNIAP D+DVW F THVS
Sbjct 115 LDDPHYEYKLRWLDALWDASASWLDASADRPLALVGDWNIAPLDEDVWDMAVFGNSTHVS 174
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
+PERKA+ D F+D VRPFTPGPGVYTYWDYTQLRFP+++GMRID +L S A V
Sbjct 175 DPERKAYQRFADLGFSDAVRPFTPGPGVYTYWDYTQLRFPRREGMRIDHMLVSS--ATHV 232
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
+I R+ERKGK SDHAPV++D+
Sbjct 233 TGGRIDRDERKGKGASDHAPVIMDV 257
>gi|325961961|ref|YP_004239867.1| exodeoxyribonuclease III [Arthrobacter phenanthrenivorans Sphe3]
gi|323468048|gb|ADX71733.1| Exodeoxyribonuclease III [Arthrobacter phenanthrenivorans Sphe3]
Length=261
Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/260 (65%), Positives = 193/260 (75%), Gaps = 3/260 (1%)
Query 31 VNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFDQWNGVAI 90
+NS+R R DRV WL R+D DVLA+QETKC D FP +GY+VAH G +QWNGVAI
Sbjct 1 MNSLRARADRVEAWLQRSDCDVLAIQETKCKDDNFPWELFERMGYEVAHFGVNQWNGVAI 60
Query 91 ASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRALDDPHYT 150
ASRVGL+DV F QPS+ GK EARA+ ATC GIR+WSLYVPNGR+LDD H
Sbjct 61 ASRVGLEDVERTFLDQPSF-GKAGKDPVQEARAMAATCAGIRIWSLYVPNGRSLDDEHMP 119
Query 151 YKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAG--CTHVSEPERK 208
YKL WL +L+ A+ + DP A +ALMGDWNIAP D+DVW + F THVS PER
Sbjct 120 YKLKWLESLKTHAQELVTQDPQAQVALMGDWNIAPFDEDVWDIDLFINNRSTHVSPPERA 179
Query 209 AFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARVMDAQI 268
AF+A A FTDVVRP+TPGPGVYTYWDYTQLRFPKK+GMRIDF+L SPALAARV A I
Sbjct 180 AFHAFESAGFTDVVRPYTPGPGVYTYWDYTQLRFPKKEGMRIDFVLASPALAARVTGASI 239
Query 269 VREERKGKAPSDHAPVLVDL 288
REERKGK SDHAPV+V+L
Sbjct 240 DREERKGKGASDHAPVVVEL 259
>gi|308175988|ref|YP_003915394.1| exodeoxyribonuclease III [Arthrobacter arilaitensis Re117]
gi|307743451|emb|CBT74423.1| exodeoxyribonuclease III [Arthrobacter arilaitensis Re117]
Length=266
Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/268 (65%), Positives = 197/268 (74%), Gaps = 7/268 (2%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELG-YDVAHVGF 82
+++ATWNVNS+R R DRV DWL R DVDVLA+QETKC D FP LFE Y+VAH G
Sbjct 1 MKIATWNVNSLRARADRVEDWLRRTDVDVLAIQETKCKDDNFP-WELFENNDYEVAHFGV 59
Query 83 DQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGR 142
+QWNGVAIASRVGL++V F GQP + GK E RA+ ATCGG+R+WSLYVPNGR
Sbjct 60 NQWNGVAIASRVGLENVERTFPGQPEF-GKGGKNPIQEPRAIAATCGGVRIWSLYVPNGR 118
Query 143 ALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFA--GCT 200
ALDD H YKL+WL L+ + GWL ++P A IALMGDWNIAP ++DVW +FF T
Sbjct 119 ALDDEHMGYKLNWLDVLKKESAGWLEENPQAQIALMGDWNIAPKNEDVWDIDFFVENNLT 178
Query 201 HVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALA 260
HVS PER AF A D FTDVVRP T G YTYWDYTQLRFPK +GMRIDF L SPAL
Sbjct 179 HVSAPERAAFAAFEDLGFTDVVRPHTEGE--YTYWDYTQLRFPKGEGMRIDFSLTSPALT 236
Query 261 ARVMDAQIVREERKGKAPSDHAPVLVDL 288
ARV+ A I REERKGK SDHAPV+V+L
Sbjct 237 ARVIGASIDREERKGKGASDHAPVIVEL 264
>gi|229822126|ref|YP_002883652.1| exodeoxyribonuclease III Xth [Beutenbergia cavernae DSM 12333]
gi|229568039|gb|ACQ81890.1| exodeoxyribonuclease III Xth [Beutenbergia cavernae DSM 12333]
Length=263
Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 167/265 (64%), Positives = 193/265 (73%), Gaps = 7/265 (2%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+R+ATWNVNSIR R +RV WL R+DVDVLA+QETK PD QFP + +GYDV H G
Sbjct 1 MRIATWNVNSIRARAERVAAWLERSDVDVLALQETKVPDEQFPVMSFAAVGYDVVHHGHS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAI SRVG+DDV +GF GQP+W G P VA EARALGATCGG+R+WSLYVPNGR
Sbjct 61 QWNGVAIVSRVGIDDVELGFPGQPTW-GDPAVA---EARALGATCGGVRLWSLYVPNGRT 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
L+DPHY YKLDWL ALRD A W +P A +AL GDWNIAP D+DVW F G THVS
Sbjct 117 LEDPHYAYKLDWLRALRDAAATWAA-EPGAQVALAGDWNIAPLDEDVWDMSLFDGATHVS 175
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
ER AF A+ DA F +V R P YTYWDY +LRFP+ +GMRIDF+L + ALA RV
Sbjct 176 PAERAAFAALDDAGFAEVTRLHV--PQAYTYWDYQRLRFPRNEGMRIDFVLATRALAERV 233
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
I REERKGK SDH PV+V++
Sbjct 234 AAVGIDREERKGKGASDHVPVVVEI 258
>gi|336319408|ref|YP_004599376.1| exodeoxyribonuclease III Xth [Cellvibrio gilvus ATCC 13127]
gi|336102989|gb|AEI10808.1| exodeoxyribonuclease III Xth [Cellvibrio gilvus ATCC 13127]
Length=273
Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/265 (65%), Positives = 200/265 (76%), Gaps = 4/265 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+ +ATWN+NS+R R+DR +L R+ VDVLA+QETKC D QFP P LGY VAHVG
Sbjct 1 MLVATWNINSVRARVDRATAFLERSGVDVLALQETKCKDEQFPHEPFEALGYQVAHVGHS 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVAI SRVG++DV VGF G P+W G P A EARA+GATCGG+RVWSLYVPNGR
Sbjct 61 QWNGVAIVSRVGIEDVEVGFPGMPTW-GDP---AQAEARAIGATCGGVRVWSLYVPNGRE 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+DDPH+TYKL+WLAAL+D A GWL DPAA +AL+GDWNIAP D DVW +FAG THV+
Sbjct 117 IDDPHFTYKLEWLAALKDAAAGWLATDPAAQVALVGDWNIAPLDTDVWDMAWFAGRTHVT 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
ER AF AI +A +T+V R P YTYWDY QLRFPK +GMRID SPALAARV
Sbjct 177 PAERAAFAAIAEAGYTEVSRVHVPAEHTYTYWDYQQLRFPKNKGMRIDLTYASPALAARV 236
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
A+I R+ERKGK PSDH PV++D+
Sbjct 237 QGARIERDERKGKQPSDHVPVVLDV 261
>gi|256833636|ref|YP_003162363.1| exodeoxyribonuclease III Xth [Jonesia denitrificans DSM 20603]
gi|256687167|gb|ACV10060.1| exodeoxyribonuclease III Xth [Jonesia denitrificans DSM 20603]
Length=264
Score = 331 bits (849), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 163/265 (62%), Positives = 190/265 (72%), Gaps = 5/265 (1%)
Query 24 LRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKCPDGQFPALPLFELGYDVAHVGFD 83
+RLA+WN+NSIR R DR L L R D+DVLA+QETKC D QFP E GY+VAHVG +
Sbjct 1 MRLASWNINSIRARTDRALAVLERHDIDVLALQETKCKDEQFPVAAFEEAGYEVAHVGVN 60
Query 84 QWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRA 143
QWNGVA+ SRVGLDDV F GQP + P V EARA+GA CGG+RVWSLYVPNGR
Sbjct 61 QWNGVALISRVGLDDVHRAFPGQPGFGEDPVV----EARAVGAICGGVRVWSLYVPNGRE 116
Query 144 LDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVS 203
+D PHY YKL WL L+++A+ W DDPAA +AL+GDWN+AP D DVW EFF G THV+
Sbjct 117 IDHPHYHYKLQWLHQLKNSAQQWTADDPAAQVALVGDWNVAPRDTDVWDREFFEGKTHVT 176
Query 204 EPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARV 263
+PER AF A D +T+V R P VYTYWDY QLRFPK QGMRIDF SPAL RV
Sbjct 177 DPERAAFAAFGDIGYTEVSRVHVP-EDVYTYWDYQQLRFPKNQGMRIDFAWCSPALTKRV 235
Query 264 MDAQIVREERKGKAPSDHAPVLVDL 288
+I R ERKGK SDH PV++D+
Sbjct 236 TGVEIDRNERKGKGASDHVPVILDI 260
Lambda K H
0.321 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 477082076112
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40