BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0429c
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium ... 400 4e-110
gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium ... 399 1e-109
gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium ... 354 3e-96
gi|342859080|ref|ZP_08715734.1| peptide deformylase [Mycobacteri... 354 4e-96
gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacteri... 352 2e-95
gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium... 347 7e-94
gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [My... 346 1e-93
gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium... 345 1e-93
gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium ... 337 5e-91
gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacteri... 337 5e-91
gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacter... 334 5e-90
gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium... 333 8e-90
gi|333989043|ref|YP_004521657.1| polypeptide deformylase Def [My... 330 5e-89
gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacteri... 329 1e-88
gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacter... 323 9e-87
gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium... 320 5e-86
gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium... 319 1e-85
gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farci... 290 6e-77
gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcu... 288 3e-76
gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus... 287 6e-76
gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia ne... 282 2e-74
gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus j... 279 2e-73
gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcu... 277 6e-73
gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurel... 276 9e-73
gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodoc... 276 1e-72
gi|343925515|ref|ZP_08765034.1| peptide deformylase [Gordonia al... 275 3e-72
gi|333918225|ref|YP_004491806.1| peptide deformylase [Amycolicic... 273 1e-71
gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segnili... 266 1e-69
gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia b... 261 5e-68
gi|134097125|ref|YP_001102786.1| putative polypeptide deformylas... 259 1e-67
gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacteriu... 259 2e-67
gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynn... 258 3e-67
gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacte... 256 1e-66
gi|340793427|ref|YP_004758890.1| polypeptide deformylase [Coryne... 254 4e-66
gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacte... 254 6e-66
gi|334563411|ref|ZP_08516402.1| polypeptide deformylase [Coryneb... 254 6e-66
gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacte... 251 3e-65
gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Coryne... 251 3e-65
gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomo... 251 4e-65
gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacte... 251 4e-65
gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacte... 250 9e-65
gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurell... 249 1e-64
gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia... 249 1e-64
gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebact... 249 2e-64
gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacteriu... 249 2e-64
gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Strepto... 248 3e-64
gi|334697629|gb|AEG82426.1| peptide deformylase [Corynebacterium... 247 7e-64
gi|337291658|ref|YP_004630679.1| polypeptide deformylase [Coryne... 246 1e-63
gi|296393247|ref|YP_003658131.1| peptide deformylase [Segnilipar... 246 1e-63
gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Coryne... 246 2e-63
>gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium tuberculosis H37Rv]
gi|15839816|ref|NP_334853.1| peptide deformylase [Mycobacterium tuberculosis CDC1551]
gi|121636343|ref|YP_976566.1| peptide deformylase [Mycobacterium bovis BCG str. Pasteur 1173P2]
83 more sequence titles
Length=197
Score = 400 bits (1029), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 197/197 (100%), Positives = 197/197 (100%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS
Sbjct 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK
Sbjct 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG
Sbjct 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSWLPGEDPDPFGH
Sbjct 181 VPGLSWLPGEDPDPFGH 197
>gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium bovis AF2122/97]
gi|39930833|sp|Q7U206.1|DEF_MYCBO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|31617193|emb|CAD93300.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE
DEFORMYLASE) [Mycobacterium bovis AF2122/97]
Length=197
Score = 399 bits (1026), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 196/197 (99%), Positives = 196/197 (99%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M VVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS
Sbjct 1 MTVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK
Sbjct 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG
Sbjct 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSWLPGEDPDPFGH
Sbjct 181 VPGLSWLPGEDPDPFGH 197
>gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291]
gi|81700308|sp|Q73T03.1|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460340|gb|EGO39240.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
S397]
Length=197
Score = 354 bits (909), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 173/197 (88%), Positives = 181/197 (92%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T PV V DGSLPADL +LIA MYDTMDAA+GVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDCA DR +T RRRGVV+NPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA
Sbjct 61 LRVFVYDCADDRGLTERRRGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAS 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG+PVSIEG GLFARMLQHETGHLDGFLYLDRLIGRYAR+AKRAVKSH WG
Sbjct 121 WARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRLIGRYARSAKRAVKSHNWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW+PGE PDPFGH
Sbjct 181 VPGLSWMPGEGPDPFGH 197
>gi|342859080|ref|ZP_08715734.1| peptide deformylase [Mycobacterium colombiense CECT 3035]
gi|342133321|gb|EGT86524.1| peptide deformylase [Mycobacterium colombiense CECT 3035]
Length=197
Score = 354 bits (909), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 172/197 (88%), Positives = 181/197 (92%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T PV VAADGSLP+DLA+LIA MYDTMDAA+GVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTQPVPVAADGSLPSDLAELIANMYDTMDAAHGVGLAANQIGVG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDCA DR T RRRGVV+NPVLETSEIPETMPDPD DDEGCLSVPGESFPTGRAK
Sbjct 61 LRVFVYDCADDRGRTERRRGVVVNPVLETSEIPETMPDPDNDDEGCLSVPGESFPTGRAK 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG PV+IEG LFARMLQHETGHLDGFLYLDRLIGR+AR+AKRAVKSH WG
Sbjct 121 WARVTGLDADGQPVTIEGNDLFARMLQHETGHLDGFLYLDRLIGRHARSAKRAVKSHNWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW+PGE PDPFGH
Sbjct 181 VPGLSWMPGEGPDPFGH 197
>gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacterium kansasii ATCC 12478]
Length=197
Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/197 (89%), Positives = 179/197 (91%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T P+ V ADGSLPADL QLI MYDTMDAA GVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTKPIPVGADGSLPADLPQLITDMYDTMDAAYGVGLAANQIGHG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDCA DR TARRRGVVINPVLETSEIPETMPDPD D+EGCLSVPGESFPTGRAK
Sbjct 61 LRVFVYDCAEDRGKTARRRGVVINPVLETSEIPETMPDPDNDEEGCLSVPGESFPTGRAK 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGL ADG+PV IEGTGLFARMLQHETGHLDGFLYLD LIGRYAR+AKRAVKSHGWG
Sbjct 121 WARVTGLGADGAPVDIEGTGLFARMLQHETGHLDGFLYLDCLIGRYARSAKRAVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSWLPGE PDPFGH
Sbjct 181 VPGLSWLPGEGPDPFGH 197
>gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
gi|158513127|sp|A1T320.1|DEF_MYCVP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|119954565|gb|ABM11570.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1]
Length=197
Score = 347 bits (889), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 168/197 (86%), Positives = 179/197 (91%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAV PIRIVGDPVLHTAT PV V ADGSLPADLA LI MYDTMDAA+GVGLAANQIG S
Sbjct 1 MAVRPIRIVGDPVLHTATEPVPVGADGSLPADLADLITDMYDTMDAAHGVGLAANQIGVS 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
R+FVYDCA +R T RRRGVVINPVLETSEIPETMPDP+ DDEGCLSVPGESFPTGRA
Sbjct 61 KRVFVYDCADERKKTTRRRGVVINPVLETSEIPETMPDPEDDDEGCLSVPGESFPTGRAD 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG+P+++EGT LFARMLQHETGHLDGFLYLDRLIGR AR+AK+ VKSHGWG
Sbjct 121 WARVTGLDADGTPITLEGTDLFARMLQHETGHLDGFLYLDRLIGRNARSAKKTVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW+PGEDPDPFGH
Sbjct 181 VPGLSWMPGEDPDPFGH 197
>gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [Mycobacterium marinum M]
gi|238690954|sp|B2HQN4.1|DEF_MYCMM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|183174094|gb|ACC39204.1| polypeptide deformylase Def [Mycobacterium marinum M]
Length=197
Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 169/197 (86%), Positives = 180/197 (92%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T+PV V ADGSLPADL +LIATMY+TMDAA+GVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDCA DR A RRGVVINPVLETSEIPE MPDPD DDEGCLSVPGESFPTGRA
Sbjct 61 LRLFVYDCADDRGKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDA+G+PV +EG+GLFARMLQHETGHLDG+LYLD LIGR+AR+AKRAVKSHGWG
Sbjct 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCLIGRHARSAKRAVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSWLPGE PDPFGH
Sbjct 181 VPGLSWLPGEGPDPFGH 197
>gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium ulcerans Agy99]
gi|158512383|sp|A0PNK2.1|DEF_MYCUA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|118569170|gb|ABL03921.1| polypeptide deformylase Def [Mycobacterium ulcerans Agy99]
Length=197
Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 169/197 (86%), Positives = 180/197 (92%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T+PV V ADGSLPADL +LIATMY+TMDAA+GVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDCA DR A RRGVVINPVLETSEIPE MPDPD DDEGCLSVPGESFPTGRA
Sbjct 61 LRLFVYDCADDRRKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDA+G+PV +EG+GLFARMLQHETGHLDG+LYLD LIGR+AR+AKRAVKSHGWG
Sbjct 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCLIGRHARSAKRAVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSWLPGE PDPFGH
Sbjct 181 VPGLSWLPGEGPDPFGH 197
>gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium leprae TN]
gi|221230516|ref|YP_002503932.1| peptide deformylase [Mycobacterium leprae Br4923]
gi|17432941|sp|Q9CBI2.1|DEF_MYCLE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|254767596|sp|B8ZSF6.1|DEF_MYCLB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|13093592|emb|CAC30884.1| polypeptide deformylase [Mycobacterium leprae]
gi|219933623|emb|CAR72026.1| polypeptide deformylase [Mycobacterium leprae Br4923]
Length=197
Score = 337 bits (865), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 164/196 (84%), Positives = 178/196 (91%), Gaps = 0/196 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA+ PIRIVGDPVLHT T PV VAADGSLPA+L LI+TMYDTMDAA+GVGLAANQIG
Sbjct 1 MAIAPIRIVGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDCA D TARRRGVVINP+LETSEIPETMPDPDTD+EGCLSVPGESFP GRA+
Sbjct 61 LRVFVYDCAEDCRQTARRRGVVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGRAQ 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG+PV+ EGTGLFARMLQHETGHLDGFLYLD LIGR+AR+AKRA+KS WG
Sbjct 121 WARVTGLDADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYLIGRHARSAKRAIKSRHWG 180
Query 181 VPGLSWLPGEDPDPFG 196
VPGLSW+PGE PDPFG
Sbjct 181 VPGLSWMPGEVPDPFG 196
>gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896930|gb|EFG76556.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=197
Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/197 (88%), Positives = 180/197 (92%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T PV V ADGSLPADLA LIA MYDTMDAA+GVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTQPVPVGADGSLPADLAALIADMYDTMDAAHGVGLAANQIGVG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDCA DR T RRRGVV+NPVLETS+IPETMPDPD DDEGCLSVPGESFPTGRA
Sbjct 61 LRVFVYDCADDRGRTDRRRGVVVNPVLETSQIPETMPDPDNDDEGCLSVPGESFPTGRAT 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG PV IEG+GLFARMLQHETGHLDGFLYLDRLIGR+AR+AKRAVKSHGWG
Sbjct 121 WARVTGLDADGKPVEIEGSGLFARMLQHETGHLDGFLYLDRLIGRHARSAKRAVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSWLPGE PDPFGH
Sbjct 181 VPGLSWLPGEGPDPFGH 197
>gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
gi|315442266|ref|YP_004075145.1| peptide deformylase [Mycobacterium sp. Spyr1]
gi|189083073|sp|A4T2T4.1|DEF_MYCGI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|145213266|gb|ABP42670.1| peptide deformylase [Mycobacterium gilvum PYR-GCK]
gi|315260569|gb|ADT97310.1| peptide deformylase [Mycobacterium sp. Spyr1]
Length=197
Score = 334 bits (856), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 162/197 (83%), Positives = 175/197 (89%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAV PI IVGDPVLHTAT P+ V DGSLPADLA LI +YDTMDAA+GVGLAANQIG +
Sbjct 1 MAVRPICIVGDPVLHTATEPIPVGPDGSLPADLADLITDLYDTMDAAHGVGLAANQIGVN 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
R+FVYDCA R T RRRGVV+NPVLETSE+PETMPDP+ DDEGCLSVPGESFPTGRA
Sbjct 61 KRVFVYDCADARKKTVRRRGVVVNPVLETSEVPETMPDPEDDDEGCLSVPGESFPTGRAD 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG+P++IEGT LFARMLQHETGHLDGFLYLD LIGR AR AKRAVKSHGWG
Sbjct 121 WARVTGLDADGTPITIEGTDLFARMLQHETGHLDGFLYLDSLIGRNARAAKRAVKSHGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGL+W+PGEDPDPFGH
Sbjct 181 VPGLTWMPGEDPDPFGH 197
>gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
gi|158512462|sp|A0QQP8.1|DEF_MYCS2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|118171957|gb|ABK72853.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155]
Length=197
Score = 333 bits (854), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 161/197 (82%), Positives = 173/197 (88%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T PV V DGSLP DL LI M+DTMDAANGVGLAANQIG +
Sbjct 1 MAVVPIRIVGDPVLHTPTEPVPVGPDGSLPDDLPALIQDMFDTMDAANGVGLAANQIGVA 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
RLFVYDCA R T RRRGVVINPVLETSE+PETMPDPD D+EGCLSVPGE+FPTGRA
Sbjct 61 KRLFVYDCAPTRGQTTRRRGVVINPVLETSEVPETMPDPDEDEEGCLSVPGENFPTGRAD 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADGSP+++EG LFARMLQHETGHLDGFLYLDRL+GRYAR AK+AVK +GWG
Sbjct 121 WARVTGLDADGSPITLEGEDLFARMLQHETGHLDGFLYLDRLVGRYARAAKKAVKRNGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW+PGE PDPFGH
Sbjct 181 VPGLSWMPGEVPDPFGH 197
>gi|333989043|ref|YP_004521657.1| polypeptide deformylase Def [Mycobacterium sp. JDM601]
gi|333485011|gb|AEF34403.1| polypeptide deformylase Def [Mycobacterium sp. JDM601]
Length=197
Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 168/197 (86%), Positives = 180/197 (92%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT TTPV VA DGSLPADLA+LI TMYDTMDAANGVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTTPVPVADDGSLPADLAELITTMYDTMDAANGVGLAANQIGVG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDCA DR T RRRGVV+NPVLETSE PETMPDPD DDEGCLSVPGESFPTGRA+
Sbjct 61 LRVFVYDCADDRRSTTRRRGVVVNPVLETSERPETMPDPDDDDEGCLSVPGESFPTGRAE 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG+PV++EGTGLFARMLQHETGHLDG LYLD L+GR+AR AKR VKS+GWG
Sbjct 121 WARVTGLDADGNPVTLEGTGLFARMLQHETGHLDGLLYLDMLVGRHARAAKRTVKSNGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW+PG+ PDPFGH
Sbjct 181 VPGLSWMPGDVPDPFGH 197
>gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacterium intracellulare ATCC 13950]
Length=197
Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/197 (85%), Positives = 180/197 (92%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVLHT T PV VAADGSLPA+L LIA +YDTMDAA+GVGLAANQIG
Sbjct 1 MAVVPIRIVGDPVLHTPTKPVPVAADGSLPAELPALIADLYDTMDAAHGVGLAANQIGVG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDCA +R T RRRGVV+NPVLETSE+PETMPDPD DDEGCLSVPGESFPTGRAK
Sbjct 61 LRVFVYDCADERGRTERRRGVVVNPVLETSEVPETMPDPDNDDEGCLSVPGESFPTGRAK 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG+PV++EG LFARMLQHETGHLDGFLYLDRL+GR+AR+AKRAVKSH WG
Sbjct 121 WARVTGLDADGNPVALEGNDLFARMLQHETGHLDGFLYLDRLVGRHARSAKRAVKSHNWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW+PGE PDPFGH
Sbjct 181 VPGLSWMPGEGPDPFGH 197
>gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacterium abscessus ATCC 19977]
gi|238688918|sp|B1MIN9.1|DEF_MYCA9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|169243232|emb|CAM64260.1| Peptide deformylase [Mycobacterium abscessus]
Length=197
Score = 323 bits (828), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 159/197 (81%), Positives = 169/197 (86%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA+VPIRIVGDPVLHT T PV V DGSLP DL +LIA MY+TMDAANGVGLAANQIG
Sbjct 1 MAIVPIRIVGDPVLHTPTQPVPVGPDGSLPDDLPELIANMYETMDAANGVGLAANQIGVP 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDCA R R RGVVINPVLETSEIPETMPDPD D+EGCLSVPGESFPTGRA
Sbjct 61 LRLFVYDCAETRGGGTRHRGVVINPVLETSEIPETMPDPDDDEEGCLSVPGESFPTGRAG 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADG V++EG LFARMLQHETGHLDGFLY+D+LIGR AR AKRAVKS+GWG
Sbjct 121 WARVTGLDADGKEVTLEGNDLFARMLQHETGHLDGFLYIDKLIGRNARAAKRAVKSNGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW PG+ DPFGH
Sbjct 181 VPGLSWTPGQVADPFGH 197
>gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium avium 104]
gi|118166686|gb|ABK67583.1| polypeptide deformylase [Mycobacterium avium 104]
Length=177
Score = 320 bits (821), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 155/175 (89%), Positives = 162/175 (93%), Gaps = 0/175 (0%)
Query 23 VAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVV 82
V DGSLPADL +LIA MYDTMDAA+GVGLAANQIG LR+FVYDCA DR +T RRRGVV
Sbjct 3 VGDDGSLPADLVKLIADMYDTMDAAHGVGLAANQIGVGLRVFVYDCADDRGLTERRRGVV 62
Query 83 INPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLF 142
+NPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA WARVTGLDADGSPVSIEG GLF
Sbjct 63 VNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRASWARVTGLDADGSPVSIEGHGLF 122
Query 143 ARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH 197
ARMLQHETGHLDGFLYLDRLIGRYAR+AKRAVKSH WGVPGLSW+PGE PDPFGH
Sbjct 123 ARMLQHETGHLDGFLYLDRLIGRYARSAKRAVKSHNWGVPGLSWMPGEGPDPFGH 177
>gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium sp. MCS]
gi|119866635|ref|YP_936587.1| peptide deformylase [Mycobacterium sp. KMS]
gi|126433171|ref|YP_001068862.1| peptide deformylase [Mycobacterium sp. JLS]
6 more sequence titles
Length=197
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/197 (82%), Positives = 174/197 (89%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAVVPIRIVGDPVL T TTP+ V DGSLPA++A LI +Y+TMDAANGVGLAANQIG S
Sbjct 1 MAVVPIRIVGDPVLRTETTPIPVGDDGSLPAEVADLIRDLYETMDAANGVGLAANQIGVS 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
R+FVYDC R RRRGVVINPVLETS+IPETMPDPD D+EGCLSVPGE FPTGRA
Sbjct 61 QRVFVYDCPDSRGRAGRRRGVVINPVLETSDIPETMPDPDDDEEGCLSVPGEQFPTGRAD 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLDADGSP+++EGTGLFARMLQHETGHLDGFLYLDRLIGR+AR AKRAVK +GWG
Sbjct 121 WARVTGLDADGSPITVEGTGLFARMLQHETGHLDGFLYLDRLIGRHARAAKRAVKHNGWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGLSW PGEDPDPFGH
Sbjct 181 VPGLSWTPGEDPDPFGH 197
>gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152]
gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
Length=196
Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 142/199 (72%), Positives = 160/199 (81%), Gaps = 7/199 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PI IVGDPVLH T VT P +LA LIA MY+TMDAANGVGLAANQ+G
Sbjct 1 MAILPIVIVGDPVLHNPTERVT-----QTPEELAGLIADMYETMDAANGVGLAANQVGVP 55
Query 61 LRLFVYDC--AADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118
LRLFVYDC A RRRG VINPVLETSEIPETMPDPD D+EGCLSVPGE FPTGR
Sbjct 56 LRLFVYDCPDAGPDGQPVRRRGAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGR 115
Query 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHG 178
A+WARVTG+D +G PV IEG G FARMLQHE GHLDG+LY+D+L+GR+AR AK+ +K +G
Sbjct 116 AEWARVTGIDENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKLVGRHARAAKKTIKRNG 175
Query 179 WGVPGLSWLPGEDPDPFGH 197
WGVPGLSW+PGE PDPFGH
Sbjct 176 WGVPGLSWVPGEVPDPFGH 194
>gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcus erythropolis PR4]
gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4]
Length=199
Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/189 (73%), Positives = 157/189 (84%), Gaps = 5/189 (2%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PIRIVGDPVLH AT PVT + PA++A+LIA MY+TMDAANGVGLAANQ+G S
Sbjct 1 MAILPIRIVGDPVLHKATEPVTQS-----PAEIAELIADMYETMDAANGVGLAANQVGVS 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDC D + RRRGVV+NPVLETSEIP+TMPDP+ D EGCLSVPGE FPTGRA
Sbjct 56 LRVFVYDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPEEDFEGCLSVPGEQFPTGRAD 115
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+VTG DADG+P+ +EGTG FARMLQHETGHLDGFLY D LIGR AR AK+ +K GWG
Sbjct 116 WAKVTGTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIGRNARAAKKIIKRSGWG 175
Query 181 VPGLSWLPG 189
PGL+W PG
Sbjct 176 KPGLTWTPG 184
>gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121]
gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121]
Length=199
Score = 287 bits (734), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 137/189 (73%), Positives = 156/189 (83%), Gaps = 5/189 (2%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PIRIVGDPVLH AT PVT + PA++A+LIA MY+TMDAANGVGLAANQ+G
Sbjct 1 MAILPIRIVGDPVLHKATEPVTQS-----PAEIAELIADMYETMDAANGVGLAANQVGVP 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDC D + RRRGVV+NPVLETSEIP+TMPDPD D EGCLSVPGE FPTGRA
Sbjct 56 LRVFVYDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPDEDFEGCLSVPGEQFPTGRAD 115
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+VTG DADG+P+ +EGTG FARMLQHETGHLDGFLY D LIGR AR AK+ +K GWG
Sbjct 116 WAKVTGTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIGRNARAAKKIIKRSGWG 175
Query 181 VPGLSWLPG 189
PGL+W PG
Sbjct 176 KPGLTWTPG 184
>gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
gi|326197827|gb|EGD55014.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395]
Length=197
Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/197 (71%), Positives = 156/197 (80%), Gaps = 3/197 (1%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PI I+G+PVLH TTPV + AD A++ L+ MYDTMDAANGVGLAANQIG
Sbjct 1 MAILPICIIGEPVLHQPTTPVELDADSKPSAEIVTLLDDMYDTMDAANGVGLAANQIGEG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDC RRRG VINPVLETSEIPETMPDPD +DEGCLSVPGE FPTGRA
Sbjct 61 LRMFVYDCPDG---GVRRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEGFPTGRAD 117
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+V G D +G PV IEG G FARMLQHETGHLDGFLY+D L+GR AR AK+AVK +GWG
Sbjct 118 WAKVVGTDRNGDPVEIEGNGFFARMLQHETGHLDGFLYVDVLVGRNARAAKKAVKRNGWG 177
Query 181 VPGLSWLPGEDPDPFGH 197
VPGL+WLPG DPFGH
Sbjct 178 VPGLTWLPGTVSDPFGH 194
>gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1]
gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1]
Length=196
Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/199 (70%), Positives = 156/199 (79%), Gaps = 7/199 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PIRIVGDPVLH T V+ + PA+LA++IA MYDTMDAANGVGLAANQ+G
Sbjct 1 MAILPIRIVGDPVLHEPTEAVSQS-----PAELAEIIADMYDTMDAANGVGLAANQVGLP 55
Query 61 LRLFVYDC--AADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118
LRLFVYDC RRRG V+NPVLETSE PETMPDPD D EGCLSVPGE FPTGR
Sbjct 56 LRLFVYDCPDVDGDGKALRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGR 115
Query 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHG 178
A+WA+VTG DADG+ V IEG G FARMLQHE GHLDGFLY+D L+GR AR AK+ +K G
Sbjct 116 AEWAKVTGTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKRAG 175
Query 179 WGVPGLSWLPGEDPDPFGH 197
WGVPGLSW+PG DPFGH
Sbjct 176 WGVPGLSWVPGTVEDPFGH 194
>gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4]
gi|254767598|sp|C1B0D9.1|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide
deformylase
gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4]
Length=196
Score = 277 bits (708), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/199 (70%), Positives = 156/199 (79%), Gaps = 7/199 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PIRIVGDPVLH T V+ + PA+L++LIA MYDTMDAANGVGLAANQ+G
Sbjct 1 MAILPIRIVGDPVLHEPTETVSES-----PAELSELIADMYDTMDAANGVGLAANQVGIP 55
Query 61 LRLFVYDC--AADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118
LRLFVYDC + RRRG V+NPVLETSE PETMPDPD D EGCLSVPGE FPTGR
Sbjct 56 LRLFVYDCPDVDETGKPFRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGR 115
Query 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHG 178
A+WA+VTG DADG+ V IEG FARMLQHE GHLDGFLY+D L+GR AR AK+ +K G
Sbjct 116 AEWAKVTGTDADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKRAG 175
Query 179 WGVPGLSWLPGEDPDPFGH 197
WGVPGLSW+PG DPFGH
Sbjct 176 WGVPGLSWVPGTVEDPFGH 194
>gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
gi|296029539|gb|ADG80309.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
Length=198
Score = 276 bits (707), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/197 (70%), Positives = 151/197 (77%), Gaps = 1/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAV+PI IVGDPVLHT TTPV + ADG A++ L+ M +TMD ANGVGLA NQ+G
Sbjct 1 MAVLPIVIVGDPVLHTPTTPVELDADGRPDAEIVALLDDMLETMDRANGVGLAGNQVGRD 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDC D RRRG VINPVL TSEIPETMPDPD D EGCLSVPGESFPTGRA
Sbjct 61 LRLFVYDCP-DEETHERRRGEVINPVLTTSEIPETMPDPDDDWEGCLSVPGESFPTGRAD 119
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+V G D +G V IEGTG FARMLQHETGHLDGFLY D L+GRYAR AK+ +K GW
Sbjct 120 WAKVVGTDRNGEKVEIEGTGFFARMLQHETGHLDGFLYTDVLVGRYARQAKKFIKKQGWN 179
Query 181 VPGLSWLPGEDPDPFGH 197
PGL+W+PG DPFGH
Sbjct 180 APGLTWVPGTVDDPFGH 196
>gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodococcus equi 103S]
gi|325673956|ref|ZP_08153646.1| peptide deformylase [Rhodococcus equi ATCC 33707]
gi|311890553|emb|CBH49871.1| peptide deformylase Def [Rhodococcus equi 103S]
gi|325555221|gb|EGD24893.1| peptide deformylase [Rhodococcus equi ATCC 33707]
Length=205
Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/203 (69%), Positives = 156/203 (77%), Gaps = 11/203 (5%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PIRIVGDPVLH T PVT + PA+LA LI MY+TMDAANGVGLAANQ+G +
Sbjct 1 MAILPIRIVGDPVLHEPTKPVTES-----PAELADLIRDMYETMDAANGVGLAANQVGVA 55
Query 61 LRLFVYDC---AADRAMTAR---RRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESF 114
RLFVYDC AA + + + RRG V+NPVLETSEIPETMPD D D EGCLSVPGE F
Sbjct 56 KRLFVYDCPDYAAGKDASGKPVMRRGCVVNPVLETSEIPETMPDEDDDVEGCLSVPGEQF 115
Query 115 PTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAV 174
PTGRA WA+VTG D G+PV IEG G FARMLQHETGHLDGFLY+D LIGR R AK+ +
Sbjct 116 PTGRADWAKVTGTDEHGNPVEIEGHGFFARMLQHETGHLDGFLYVDVLIGRNKRAAKKTI 175
Query 175 KSHGWGVPGLSWLPGEDPDPFGH 197
K GWGVPGLSW PG DPFGH
Sbjct 176 KREGWGVPGLSWTPGTVDDPFGH 198
>gi|343925515|ref|ZP_08765034.1| peptide deformylase [Gordonia alkanivorans NBRC 16433]
gi|343764607|dbj|GAA11960.1| peptide deformylase [Gordonia alkanivorans NBRC 16433]
Length=204
Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/197 (68%), Positives = 155/197 (79%), Gaps = 0/197 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PI IVG+PVLH T+PV + ADG ++ L+ M++TMDAA+GVGLAANQ+G
Sbjct 1 MAILPICIVGEPVLHQPTSPVPLDADGRPSPEVITLLDDMFETMDAAHGVGLAANQVGVG 60
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
R+FVYDC M RRRG VINPVLETSEIPETMPDPD +DEGCLSVPGE FPTGRA
Sbjct 61 SRMFVYDCPDGDRMATRRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEQFPTGRAD 120
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTG+D G+ + IEG G FARMLQHE GHLDGFLY+D L+GR AR AK+A+K + WG
Sbjct 121 WARVTGVDRTGAEIVIEGNGFFARMLQHEVGHLDGFLYVDVLVGRNARAAKKAIKRNKWG 180
Query 181 VPGLSWLPGEDPDPFGH 197
VPGL+WLPG DPFGH
Sbjct 181 VPGLTWLPGAVADPFGH 197
>gi|333918225|ref|YP_004491806.1| peptide deformylase [Amycolicicoccus subflavus DQS3-9A1]
gi|333480446|gb|AEF39006.1| Peptide deformylase [Amycolicicoccus subflavus DQS3-9A1]
Length=196
Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/199 (69%), Positives = 152/199 (77%), Gaps = 7/199 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA+ PIR+VGDPVLH T V P +LA L+ MYDTM AA+GVGLAANQIG
Sbjct 1 MAIHPIRVVGDPVLHAPTRIVE-----QPPQELADLVQDMYDTMAAAHGVGLAANQIGVD 55
Query 61 LRLFVYDCAA--DRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGR 118
LR+FVYDC + RR G VINPVLETSEIPETMPDP+ D EGCLSVPGE FPTGR
Sbjct 56 LRVFVYDCPDRDEDGTVVRRTGEVINPVLETSEIPETMPDPEDDLEGCLSVPGEQFPTGR 115
Query 119 AKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHG 178
A WARVTG+D G+PV +EGTGLFAR LQHE GHLDGFLY+DRLIGR AR AK+ +K +G
Sbjct 116 AAWARVTGVDVQGNPVDVEGTGLFARCLQHEVGHLDGFLYVDRLIGRNARAAKKTIKKNG 175
Query 179 WGVPGLSWLPGEDPDPFGH 197
WGVPGLSW PG PDPFGH
Sbjct 176 WGVPGLSWTPGTVPDPFGH 194
>gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
gi|316255348|gb|EFV14606.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974]
Length=198
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/198 (66%), Positives = 151/198 (77%), Gaps = 1/198 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M ++PIRI GDPVLH T V + +G+ P D+ L+ MY+T+ A++GVGLAA Q+G
Sbjct 1 MTILPIRIAGDPVLHRPTELVRLTDEGAAPPDVIVLLEDMYETLKASHGVGLAATQVGVG 60
Query 61 LRLFVYDCAADRA-MTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA 119
LRLFVYDC D + R+G VINPVLETS+IPE MPD D D+EGCLS PG +PTGRA
Sbjct 61 LRLFVYDCPDDTSGKRVSRKGEVINPVLETSDIPEGMPDEDEDEEGCLSAPGLRYPTGRA 120
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WA+VTG+D G PV IEGTGLFARMLQHE GHLDG LYLD L+GR+AR AK+AVK GW
Sbjct 121 AWAKVTGVDRAGQPVEIEGTGLFARMLQHEVGHLDGKLYLDVLVGRWARKAKKAVKQEGW 180
Query 180 GVPGLSWLPGEDPDPFGH 197
GVPGLSW PG DPDPFGH
Sbjct 181 GVPGLSWTPGVDPDPFGH 198
>gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia bronchialis DSM 43247]
gi|262084017|gb|ACY19985.1| peptide deformylase [Gordonia bronchialis DSM 43247]
Length=200
Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 135/198 (69%), Positives = 158/198 (80%), Gaps = 1/198 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MA++PI I+G+PVLH T PV + G A++ L+ MYDTMDAA+GVGLAANQ+G
Sbjct 1 MAILPICIIGEPVLHRRTEPVPLDDAGKPSAEVIALLDDMYDTMDAAHGVGLAANQVGVG 60
Query 61 LRLFVYDC-AADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA 119
LR+FVYDC +R + RRRG VINPVLETSEIPETMPDPD +DEGCLSVPGE FPTGRA
Sbjct 61 LRMFVYDCPEGERYVPERRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEQFPTGRA 120
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WARVTG+D G+ V +EGTG FARMLQHETGHLDGFLY+D L+GR AR AK+A+K + W
Sbjct 121 DWARVTGVDRTGAEVVVEGTGFFARMLQHETGHLDGFLYVDVLVGRNARAAKKAIKKNKW 180
Query 180 GVPGLSWLPGEDPDPFGH 197
GVPGL+W PGE DPFGH
Sbjct 181 GVPGLTWTPGEVEDPFGH 198
>gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea
NRRL 2338]
gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea
NRRL 2338]
gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea
NRRL 2338]
Length=191
Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 130/195 (67%), Positives = 150/195 (77%), Gaps = 7/195 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAV PIRIVGDPVLH T V D +L L+ M++TM AA+GVGLAANQIG
Sbjct 1 MAVHPIRIVGDPVLHNPTRLVENFDD-----ELRTLVDDMFETMAAASGVGLAANQIGVD 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDC D + + RGVV+NPVLET+E+PE+MPDP+ D EGCLSVPGESFPTGRA
Sbjct 56 LRLFVYDCPDDEGV--QHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRAD 113
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+VTG D DG+PV +EGTG FAR LQHET HLDGFLYL RL+GR+AR AK+ VK +GWG
Sbjct 114 WAKVTGSDVDGNPVEVEGTGFFARCLQHETDHLDGFLYLSRLVGRHARAAKKTVKRNGWG 173
Query 181 VPGLSWLPGEDPDPF 195
VPG+SW P E DPF
Sbjct 174 VPGMSWDPSEHGDPF 188
>gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411]
gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411]
gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
Length=193
Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/197 (66%), Positives = 147/197 (75%), Gaps = 5/197 (2%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M ++PI I GDPVLH TT V D S DLA LIA MY+T+ AANGVGLAANQ+G +
Sbjct 1 MTIMPIVICGDPVLHNPTTKV----DPSEIPDLAPLIADMYETLSAANGVGLAANQVGVN 56
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
R FVYDC D RRG VINPVLETSEIPETMPD + D+EGCLSVPG SFPTGRA
Sbjct 57 KRFFVYDCP-DTERGEMRRGCVINPVLETSEIPETMPDEEEDEEGCLSVPGYSFPTGRAD 115
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARVTGLD +G V++EGTG FAR LQHE GHLDGFLY+D LIGR+ R +K+AVK+ GW
Sbjct 116 WARVTGLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKRKSKKAVKAEGWD 175
Query 181 VPGLSWLPGEDPDPFGH 197
G +W PG D DPFGH
Sbjct 176 HAGNTWTPGVDEDPFGH 192
>gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827]
gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827]
Length=195
Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 128/195 (66%), Positives = 147/195 (76%), Gaps = 7/195 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAV PIRI GDPVLH T PV D +L LIA MY+TM AANGVGLAANQIG
Sbjct 1 MAVHPIRIAGDPVLHNPTRPVDEHDD-----ELRALIADMYETMAAANGVGLAANQIGVD 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LRLFVYDC D + RRRG V+NPVL+TS++P MPDPD D EGCLS PGES+PTGRA
Sbjct 56 LRLFVYDCPDDEGV--RRRGEVVNPVLQTSDVPLGMPDPDDDYEGCLSAPGESYPTGRAS 113
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+VTG D +G PV +EGTG FAR LQHET HLDG+LYLDRL+GR+ R +K+ +K++GWG
Sbjct 114 WAKVTGTDGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHKRASKKMIKANGWG 173
Query 181 VPGLSWLPGEDPDPF 195
VPGLSW P DPF
Sbjct 174 VPGLSWDPATSEDPF 188
>gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
gi|300534513|gb|EFK55572.1| peptide deformylase [Corynebacterium genitalium ATCC 33030]
Length=200
Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/196 (67%), Positives = 148/196 (76%), Gaps = 9/196 (4%)
Query 3 VVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLR 62
+ PI I GDPVLHT T PVT A+L +LIA M++TMDAANGVGLAANQIG + R
Sbjct 13 IRPIVIHGDPVLHTPTEPVTEPV-----AELKELIADMHETMDAANGVGLAANQIGVNKR 67
Query 63 LFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPD-TDDEGCLSVPGESFPTGRAKW 121
LFVY C M RRG VINPVLETS+IP+TMP D DDEGCLSVPGESFPT RA+W
Sbjct 68 LFVYHCPDGDTM---RRGTVINPVLETSDIPKTMPKDDGEDDEGCLSVPGESFPTARAEW 124
Query 122 ARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGV 181
A+VTGLD +G PV +EGTG FAR LQHE GHLDG++YLD L GRY R AKRAVK++GW
Sbjct 125 AKVTGLDENGDPVEVEGTGFFARCLQHEVGHLDGYVYLDVLTGRYKREAKRAVKANGWTE 184
Query 182 PGLSWLPGEDPDPFGH 197
G +WLPG D DPFGH
Sbjct 185 AGNTWLPGTDEDPFGH 200
>gi|340793427|ref|YP_004758890.1| polypeptide deformylase [Corynebacterium variabile DSM 44702]
gi|340533337|gb|AEK35817.1| polypeptide deformylase [Corynebacterium variabile DSM 44702]
Length=215
Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 133/213 (63%), Positives = 149/213 (70%), Gaps = 16/213 (7%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLP--ADLAQLIATMYDTMDAANGVGLAANQIG 58
M+V+P+ I GDPVLHT TTPVT A L +L+ LIA MY+T++ A+GVGLAANQ+G
Sbjct 1 MSVLPVVICGDPVLHTPTTPVTEPAADQLGEGTELSTLIADMYETLELAHGVGLAANQVG 60
Query 59 CSLRLFVYDC--------------AADRAMTARRRGVVINPVLETSEIPETMPDPDTDDE 104
LR+FVYDC D RRG VINPVLETSEIPETMPDP+ D E
Sbjct 61 VGLRVFVYDCPDIDGPEGTRKTQEEVDAQGGPMRRGCVINPVLETSEIPETMPDPEDDVE 120
Query 105 GCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIG 164
GCLSVPG +PTGRA WARVTG D G P S+EG G FAR LQHETGHLDG LY+D LIG
Sbjct 121 GCLSVPGYDYPTGRADWARVTGTDEHGEPTSVEGYGFFARCLQHETGHLDGHLYIDMLIG 180
Query 165 RYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH 197
R AR AK+ VK GW VPG SWLPG D DPFGH
Sbjct 181 RNARAAKKMVKREGWTVPGNSWLPGVDADPFGH 213
>gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
gi|311740109|ref|ZP_07713942.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
gi|255297021|gb|EET76346.1| peptide deformylase [Corynebacterium tuberculostearicum SK141]
gi|311304805|gb|EFQ80875.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035]
Length=207
Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 131/207 (64%), Positives = 148/207 (72%), Gaps = 12/207 (5%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M + PI I G+ VLH T PV ++ S P ++ QLIA MY+TMDAANGVGLAANQ+G
Sbjct 1 MTIRPIVIHGETVLHEPTQPVE-ESEISTP-EMQQLIADMYETMDAANGVGLAANQVGIG 58
Query 61 LRLFVYDC---------AADRAMTARRRGVVINPVLETSEIPETMP-DPDTDDEGCLSVP 110
RLFVY C R+G VINPVLETSEIPETMP D +DDEGCLSVP
Sbjct 59 KRLFVYHCPDTDGPNGTELPSEEAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVP 118
Query 111 GESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNA 170
GE FPTGRA WARVTG D +G+ +S+EG G FAR LQHETGHLDGFLY D LIGRY R A
Sbjct 119 GEGFPTGRADWARVTGKDENGNDISVEGYGFFARCLQHETGHLDGFLYTDTLIGRYKRQA 178
Query 171 KRAVKSHGWGVPGLSWLPGEDPDPFGH 197
K+A+K HGW PG SW+PGED DPFGH
Sbjct 179 KKAIKRHGWTEPGYSWVPGEDADPFGH 205
>gi|334563411|ref|ZP_08516402.1| polypeptide deformylase [Corynebacterium bovis DSM 20582]
Length=210
Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 131/211 (63%), Positives = 149/211 (71%), Gaps = 19/211 (9%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V+PI I GDPVLHT T PVT + P +LA+LIA M++TMD A+GVGLAANQ+G
Sbjct 3 MTVLPIVICGDPVLHTPTAPVTAS-----PEELAELIADMHETMDRAHGVGLAANQVGVG 57
Query 61 LRLFVYDC----------AADRAMTAR----RRGVVINPVLETSEIPETMPDPDTDDEGC 106
RLFVY C ++ + A+ RRG V+NPVLETS +PETMPD D D EGC
Sbjct 58 SRLFVYHCPDIDGPDGTRKSEEDIEAQGGPMRRGTVVNPVLETSAVPETMPDEDEDSEGC 117
Query 107 LSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRY 166
LSVPG FPTGRA WARVTG D G PVS+EG G FAR LQHE GHLDGFLY D LIGRY
Sbjct 118 LSVPGYDFPTGRADWARVTGTDEHGRPVSVEGYGFFARCLQHEVGHLDGFLYTDMLIGRY 177
Query 167 ARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH 197
R A++AVK GW V GL+W PGE PDPFGH
Sbjct 178 RRAARKAVKREGWTVGGLTWTPGETPDPFGH 208
>gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
Length=204
Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/205 (64%), Positives = 147/205 (72%), Gaps = 11/205 (5%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M + PI I GDPVLH T PVT D +L +LIA M++TMDAA+GVGLAANQIG +
Sbjct 1 MTIRPIVIHGDPVLHNPTEPVTEPIDS---PELQELIADMHETMDAAHGVGLAANQIGVN 57
Query 61 LRLFVYDC-------AADRAMTARRRGVVINPVLETSEIPETMP-DPDTDDEGCLSVPGE 112
RLFVY C + RRG VINPVLETSEIPETMP D ++DEGCLSVPGE
Sbjct 58 KRLFVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGE 117
Query 113 SFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKR 172
FPTGRA WARVTG + G +SIEG G FARMLQHETGHLDGF+Y D L GRY R AK+
Sbjct 118 GFPTGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKK 177
Query 173 AVKSHGWGVPGLSWLPGEDPDPFGH 197
A+K +GW GL+WLPGED DPFGH
Sbjct 178 AIKRNGWTEAGLTWLPGEDEDPFGH 202
>gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
gi|227455114|gb|ACP33867.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
Length=210
Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/205 (64%), Positives = 147/205 (72%), Gaps = 11/205 (5%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M + PI I GDPVLH T PVT D +L +LIA M++TMDAA+GVGLAANQIG +
Sbjct 7 MTIRPIVIHGDPVLHNPTEPVTEPIDSP---ELQELIADMHETMDAAHGVGLAANQIGVN 63
Query 61 LRLFVYDC-------AADRAMTARRRGVVINPVLETSEIPETMP-DPDTDDEGCLSVPGE 112
RLFVY C + RRG VINPVLETSEIPETMP D ++DEGCLSVPGE
Sbjct 64 KRLFVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGE 123
Query 113 SFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKR 172
FPTGRA WARVTG + G +SIEG G FARMLQHETGHLDGF+Y D L GRY R AK+
Sbjct 124 GFPTGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKK 183
Query 173 AVKSHGWGVPGLSWLPGEDPDPFGH 197
A+K +GW GL+WLPGED DPFGH
Sbjct 184 AIKRNGWTEAGLTWLPGEDEDPFGH 208
>gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
Length=183
Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 124/188 (66%), Positives = 145/188 (78%), Gaps = 7/188 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M + PI IVG+PVLH T V+ S +LA L+ M++TM AA GVGLAANQIG
Sbjct 1 MTIHPICIVGEPVLHKPTREVS-----SFDDELATLVEDMFETMYAAEGVGLAANQIGVD 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDC D + R +GVV+NP LETSEIPETMPDPD D EGCLSVPGESFPTGRA
Sbjct 56 LRVFVYDCPDDEGV--RHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRAS 113
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+VTG D +G+PV +EGTG FAR LQHET HLDG+LYLDRLIGR+AR AK+ +K++ WG
Sbjct 114 WAKVTGFDVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIGRHARAAKKMLKANKWG 173
Query 181 VPGLSWLP 188
VPG SWLP
Sbjct 174 VPGKSWLP 181
>gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
gi|227077310|gb|EEI15273.1| peptide deformylase [Corynebacterium accolens ATCC 49725]
Length=207
Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/209 (62%), Positives = 151/209 (73%), Gaps = 16/209 (7%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M + PI I G+PVLH TTPV + S ++ QLIA MY+TM+ A+GVGLAANQ+G
Sbjct 1 MTIRPIVIHGEPVLHQPTTPVEESEISS--PEMQQLIADMYETMEVAHGVGLAANQVGIG 58
Query 61 LRLFVYDCA-----------ADRAMTARRRGVVINPVLETSEIPETMP-DPDTDDEGCLS 108
RLFVY C AD+A R+G VINPVLETSEIPETMP D +DDEGCLS
Sbjct 59 KRLFVYHCPDTEGPDGTELPADKA--GMRKGCVINPVLETSEIPETMPADDGSDDEGCLS 116
Query 109 VPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYAR 168
VPGE FPTGRA WARVTG D +G+ +++EG G FAR LQHETGHLDG++Y D LIGRY R
Sbjct 117 VPGEGFPTGRADWARVTGKDENGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKR 176
Query 169 NAKRAVKSHGWGVPGLSWLPGEDPDPFGH 197
AK+A+K +GW PG SW+PGED DPFGH
Sbjct 177 QAKKAIKRNGWTEPGYSWMPGEDEDPFGH 205
>gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
gi|304567146|gb|EFM42761.1| peptide deformylase [Corynebacterium accolens ATCC 49726]
Length=207
Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 128/209 (62%), Positives = 150/209 (72%), Gaps = 16/209 (7%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M + PI I G+PVLH TTPV + S ++ QLIA MY+TM+ A+GVGLAANQ+G
Sbjct 1 MTIRPIVIHGEPVLHQPTTPVEESEISS--PEMQQLIADMYETMEVAHGVGLAANQVGIG 58
Query 61 LRLFVYDCA-----------ADRAMTARRRGVVINPVLETSEIPETMP-DPDTDDEGCLS 108
RLFVY C AD+A R+G VINPVLETSEIPETMP D +DDEGCLS
Sbjct 59 KRLFVYHCPDTEGPDGTELPADKA--GMRKGCVINPVLETSEIPETMPADDGSDDEGCLS 116
Query 109 VPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYAR 168
VPGE FPTGRA WARVTG D G+ +++EG G FAR LQHETGHLDG++Y D LIGRY R
Sbjct 117 VPGEGFPTGRADWARVTGKDEHGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKR 176
Query 169 NAKRAVKSHGWGVPGLSWLPGEDPDPFGH 197
AK+A+K +GW PG SW+PGED DPFGH
Sbjct 177 QAKKAIKRNGWTEPGYSWMPGEDEDPFGH 205
>gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233]
gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233]
Length=190
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/197 (61%), Positives = 144/197 (74%), Gaps = 7/197 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M + PI I G+PVLH T PVT +L LI M++T +AA+G GLAANQIG
Sbjct 1 MTIRPIVICGEPVLHRPTRPVTEFGT----PELNTLIQDMFETNEAAHGAGLAANQIGDD 56
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
RLF+YDC +RRRG +INP +ETS IP MPDPD D EGCLSVPGE+FPTGRA
Sbjct 57 RRLFIYDCPD---QGSRRRGYIINPTIETSPIPTNMPDPDDDSEGCLSVPGENFPTGRAD 113
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WARV G D+DG P+ +EGTG FAR LQHET HLDG LY+DRLIG+ + A +AV+ +GWG
Sbjct 114 WARVKGFDSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRLIGKNQKRAFKAVRENGWG 173
Query 181 VPGLSWLPGEDPDPFGH 197
VPGL+W+PG+DPDPFGH
Sbjct 174 VPGLTWMPGKDPDPFGH 190
>gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia cinnamea P4]
gi|319436469|gb|EFV91579.1| polypeptide deformylase [Dietzia cinnamea P4]
Length=223
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/210 (63%), Positives = 147/210 (70%), Gaps = 20/210 (9%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
MAV PI I+GDP LH T PVT + P ++A L+ +YDTMDAANGVGLAANQIG
Sbjct 1 MAVRPIVILGDPALHAPTEPVTES-----PEEIADLVRDLYDTMDAANGVGLAANQIGVR 55
Query 61 LRLFVYDC----------AADRAMTAR-----RRGVVINPVLETSEIPETMPDPDTDDEG 105
R+FVYDC + + AR RRG VINPVLETSEIPETMPDP+ D EG
Sbjct 56 KRVFVYDCPDLDTEDGEGVSREEVEARGGWLNRRGCVINPVLETSEIPETMPDPEDDLEG 115
Query 106 CLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGR 165
CLSVPG +FP GRA WARVTG D G PVS+EG GLFAR LQHE GHLDGF+Y D LIGR
Sbjct 116 CLSVPGVNFPRGRAWWARVTGTDEHGEPVSVEGYGLFARCLQHEVGHLDGFVYTDHLIGR 175
Query 166 YARNAKRAVKSHGWGVPGLSWLPGEDPDPF 195
+ AKR ++ GWGVPGLSW P DPDPF
Sbjct 176 NKKAAKRHIRDAGWGVPGLSWDPATDPDPF 205
>gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R]
gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344046196|gb|EGV41862.1| peptide deformylase [Corynebacterium glutamicum S9114]
Length=193
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/198 (64%), Positives = 144/198 (73%), Gaps = 8/198 (4%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V PI I GDPVLH T VT ++L +LIA MY+TMD ANGVGLAANQIG S
Sbjct 1 MTVRPIVIHGDPVLHNPTQLVTEDV-----SELQELIADMYETMDVANGVGLAANQIGVS 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMP-DPDTDDEGCLSVPGESFPTGRA 119
R+FVYDC D + +G INPVLETSEIPETMP D +D+EGCLSVPGE FPTGRA
Sbjct 56 KRIFVYDCPDDEGVM--HKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRA 113
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WA+VTGL+ G VS+E G AR QHE GHLDGFLY D LIGR+ R AK+A+K++GW
Sbjct 114 HWAKVTGLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIKANGW 173
Query 180 GVPGLSWLPGEDPDPFGH 197
PGL+W+PGED DPFGH
Sbjct 174 TEPGLTWMPGEDEDPFGH 191
>gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
gi|39931164|sp|Q8NM41.1|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide
deformylase 2
gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum
ATCC 13032]
gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
Length=193
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/198 (64%), Positives = 144/198 (73%), Gaps = 8/198 (4%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V PI I GDPVLH T VT ++L +LIA MY+TMD ANGVGLAANQIG S
Sbjct 1 MTVRPIVIHGDPVLHNPTQLVTEDV-----SELQELIADMYETMDVANGVGLAANQIGVS 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMP-DPDTDDEGCLSVPGESFPTGRA 119
R+FVYDC D + +G INPVLETSEIPETMP D +D+EGCLSVPGE FPTGRA
Sbjct 56 KRIFVYDCPDDEGVM--HKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRA 113
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WA+VTGL+ G VS+E G AR QHE GHLDGFLY D LIGR+ R AK+A+K++GW
Sbjct 114 HWAKVTGLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIKANGW 173
Query 180 GVPGLSWLPGEDPDPFGH 197
PGL+W+PGED DPFGH
Sbjct 174 TEPGLTWMPGEDEDPFGH 191
>gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4]
gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4]
Length=188
Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/192 (64%), Positives = 145/192 (76%), Gaps = 7/192 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V PI I G+PVLH T +T D LA L+ M++TM AA GVGLAANQIG
Sbjct 1 MTVHPICIAGEPVLHQPTREITEFDD-----KLAALVEDMFETMYAAEGVGLAANQIGLD 55
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
LR+FVYDC D + +GVV+NP LETSEIPETMPDPD D EGCLS PGES+PTGRAK
Sbjct 56 LRVFVYDCPDDEGV--EHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAK 113
Query 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWG 180
WA+VTG D +G+P+ +EGTG FAR LQHET HLDGF+YLDRL+GR+AR AK+ +K + WG
Sbjct 114 WAKVTGFDVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKKNKWG 173
Query 181 VPGLSWLPGEDP 192
VPGL+WLP ++P
Sbjct 174 VPGLTWLPPKEP 185
>gi|334697629|gb|AEG82426.1| peptide deformylase [Corynebacterium ulcerans 809]
Length=197
Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 126/197 (64%), Positives = 142/197 (73%), Gaps = 6/197 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V PI I GDPVLH T VT D +L +LIA MY+TM A+GVGLAANQIG
Sbjct 1 MTVRPIVIHGDPVLHNPTAEVTEPIDSP---ELQELIADMYETMAVAHGVGLAANQIGVG 57
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPD-TDDEGCLSVPGESFPTGRA 119
RLFV+DC D RG VINPVLET+EIP+TMP D +DDEGCLSVPGE FPTGRA
Sbjct 58 KRLFVFDCPDDEGHM--HRGCVINPVLETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRA 115
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WA+VTGLD G+PVS EGTG AR QHE GHLDGFLY D L+GRY R AK+A+K +GW
Sbjct 116 TWAKVTGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKRQAKKAIKRNGW 175
Query 180 GVPGLSWLPGEDPDPFG 196
GL+W+PGED DPFG
Sbjct 176 TEAGLTWMPGEDEDPFG 192
>gi|337291658|ref|YP_004630679.1| polypeptide deformylase [Corynebacterium ulcerans BR-AD22]
gi|334699964|gb|AEG84760.1| polypeptide deformylase [Corynebacterium ulcerans BR-AD22]
Length=197
Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/197 (64%), Positives = 141/197 (72%), Gaps = 6/197 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V PI I GDPVLH T VT D L +LIA MY+TM A+GVGLAANQIG
Sbjct 1 MTVRPIVIHGDPVLHNPTAEVTEPIDSP---KLQELIADMYETMAVAHGVGLAANQIGVG 57
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPD-TDDEGCLSVPGESFPTGRA 119
RLFV+DC D RG VINPVLET+EIP+TMP D +DDEGCLSVPGE FPTGRA
Sbjct 58 KRLFVFDCPDDEGHM--HRGCVINPVLETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRA 115
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WA+VTGLD G+PVS EGTG AR QHE GHLDGFLY D L+GRY R AK+A+K +GW
Sbjct 116 TWAKVTGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKRQAKKAIKRNGW 175
Query 180 GVPGLSWLPGEDPDPFG 196
GL+W+PGED DPFG
Sbjct 176 TEAGLTWMPGEDEDPFG 192
>gi|296393247|ref|YP_003658131.1| peptide deformylase [Segniliparus rotundus DSM 44985]
gi|296180394|gb|ADG97300.1| peptide deformylase [Segniliparus rotundus DSM 44985]
Length=198
Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/198 (65%), Positives = 149/198 (76%), Gaps = 1/198 (0%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V+PIRI GDPVLH T V + A+G+ P ++ L+ MYDT+ A++GVGLAA QIG
Sbjct 1 MTVLPIRITGDPVLHRPTELVRLTAEGAAPPEVVSLLEDMYDTLKASHGVGLAATQIGVG 60
Query 61 LRLFVYDCAADRA-MTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA 119
LRLFVYDC D + R+G +INPVL+TS +PE MPD D D+EGCLSVPG FPTGRA
Sbjct 61 LRLFVYDCPDDTSGKRVSRKGEIINPVLQTSALPEGMPDEDEDEEGCLSVPGLRFPTGRA 120
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WA+ TG+D G PV IEG GLFARMLQHE GHLDG LY+D L+GR+AR AK+AVK GW
Sbjct 121 VWAKATGVDRTGKPVEIEGEGLFARMLQHEVGHLDGKLYVDMLVGRWARAAKKAVKKQGW 180
Query 180 GVPGLSWLPGEDPDPFGH 197
GVPGLSW PG D DPFGH
Sbjct 181 GVPGLSWTPGVDADPFGH 198
>gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
gi|300686691|gb|ADK29613.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41]
gi|302206928|gb|ADL11270.1| Peptide deformylase [Corynebacterium pseudotuberculosis C231]
gi|302331492|gb|ADL21686.1| Peptide deformylase [Corynebacterium pseudotuberculosis 1002]
gi|308277182|gb|ADO27081.1| N-formylmethionyl-tRNA deformylase [Corynebacterium pseudotuberculosis
I19]
Length=197
Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/197 (63%), Positives = 143/197 (73%), Gaps = 6/197 (3%)
Query 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
M V PI I GDPVLH T VT D +L +LIA MY+TM A+GVGLAANQIG
Sbjct 1 MTVRPIVIHGDPVLHNPTAEVTEPIDSP---ELQELIADMYETMAVAHGVGLAANQIGVG 57
Query 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPD-TDDEGCLSVPGESFPTGRA 119
RLFV++C D+ RG VINP+LET+EIP+TMP D +DDEGCLSVPGE FPTGRA
Sbjct 58 KRLFVFNCPDDQGHM--HRGCVINPILETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRA 115
Query 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGW 179
WA+VTGLD G+PVS EGTG AR QHE GHLDGFLY D L+GRY R AK+A+K +GW
Sbjct 116 TWAKVTGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKRQAKKAIKRNGW 175
Query 180 GVPGLSWLPGEDPDPFG 196
GL+W+PGED DPFG
Sbjct 176 TEAGLTWMPGEDEDPFG 192
Lambda K H
0.319 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 208621361780
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40