BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0430
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
gi|15839817|ref|NP_334854.1| hypothetical protein MT0445 [Mycoba... 205 2e-51
gi|253797354|ref|YP_003030355.1| hypothetical protein TBMG_00431... 204 4e-51
gi|15607571|ref|NP_214944.1| hypothetical protein Rv0430 [Mycoba... 203 7e-51
gi|296167941|ref|ZP_06850085.1| conserved hypothetical protein [... 200 7e-50
gi|118617061|ref|YP_905393.1| hypothetical protein MUL_1377 [Myc... 199 1e-49
gi|41410017|ref|NP_962853.1| hypothetical protein MAP3919 [Mycob... 198 2e-49
gi|254818948|ref|ZP_05223949.1| hypothetical protein MintA_03431... 198 2e-49
gi|342859079|ref|ZP_08715733.1| hypothetical protein MCOL_09383 ... 197 3e-49
gi|183980769|ref|YP_001849060.1| hypothetical protein MMAR_0745 ... 194 3e-48
gi|15828037|ref|NP_302300.1| hypothetical protein ML1927 [Mycoba... 192 2e-47
gi|240168905|ref|ZP_04747564.1| hypothetical protein MkanA1_0631... 191 4e-47
gi|145220779|ref|YP_001131457.1| Fis family transcriptional regu... 186 1e-45
gi|120401748|ref|YP_951577.1| Fis family transcriptional regulat... 185 2e-45
gi|118469601|ref|YP_885237.1| hypothetical protein MSMEG_0833 [M... 183 9e-45
gi|108797550|ref|YP_637747.1| hypothetical protein Mmcs_0570 [My... 177 4e-43
gi|343925514|ref|ZP_08765033.1| hypothetical protein GOALK_046_0... 167 6e-40
gi|262200672|ref|YP_003271880.1| hypothetical protein Gbro_0662 ... 166 7e-40
gi|226304982|ref|YP_002764940.1| hypothetical protein RER_14930 ... 165 2e-39
gi|169631264|ref|YP_001704913.1| hypothetical protein MAB_4186c ... 164 4e-39
gi|226361305|ref|YP_002779083.1| hypothetical protein ROP_18910 ... 164 5e-39
gi|229493715|ref|ZP_04387499.1| transcriptional regulator, Fis f... 163 8e-39
gi|312141213|ref|YP_004008549.1| hypothetical protein REQ_38850 ... 162 1e-38
gi|111019168|ref|YP_702140.1| hypothetical protein RHA1_ro02175 ... 162 1e-38
gi|325673957|ref|ZP_08153647.1| hypothetical protein HMPREF0724_... 162 1e-38
gi|333989044|ref|YP_004521658.1| hypothetical protein JDM601_040... 160 5e-38
gi|296141404|ref|YP_003648647.1| hypothetical protein Tpau_3730 ... 159 1e-37
gi|54027274|ref|YP_121516.1| hypothetical protein nfa53000 [Noca... 156 9e-37
gi|326383420|ref|ZP_08205107.1| hypothetical protein SCNU_10806 ... 153 1e-35
gi|333918226|ref|YP_004491807.1| hypothetical protein AS9A_0552 ... 149 2e-34
gi|296128547|ref|YP_003635797.1| hypothetical protein Cfla_0686 ... 134 4e-30
gi|336319544|ref|YP_004599512.1| hypothetical protein Celgi_0422... 132 2e-29
gi|269957718|ref|YP_003327507.1| hypothetical protein Xcel_2943 ... 132 2e-29
gi|317125977|ref|YP_004100089.1| hypothetical protein Intca_2863... 129 1e-28
gi|229819311|ref|YP_002880837.1| hypothetical protein Bcav_0814 ... 128 2e-28
gi|302530615|ref|ZP_07282957.1| transcriptional regulator [Strep... 127 4e-28
gi|319949866|ref|ZP_08023876.1| hypothetical protein ES5_10257 [... 126 1e-27
gi|334338058|ref|YP_004543210.1| hypothetical protein Isova_2613... 123 1e-26
gi|220911665|ref|YP_002486974.1| hypothetical protein Achl_0890 ... 122 1e-26
gi|300790373|ref|YP_003770664.1| hypothetical protein AMED_8567 ... 121 3e-26
gi|119962707|ref|YP_946788.1| hypothetical protein AAur_0998 [Ar... 119 1e-25
gi|269796439|ref|YP_003315894.1| hypothetical protein Sked_31630... 119 2e-25
gi|116669340|ref|YP_830273.1| hypothetical protein Arth_0775 [Ar... 116 1e-24
gi|325962237|ref|YP_004240143.1| hypothetical protein Asphe3_081... 114 3e-24
gi|134097126|ref|YP_001102787.1| hypothetical protein SACE_0515 ... 114 4e-24
gi|117927308|ref|YP_871859.1| hypothetical protein Acel_0097 [Ac... 114 5e-24
gi|258654975|ref|YP_003204131.1| hypothetical protein Namu_4868 ... 112 1e-23
gi|331699450|ref|YP_004335689.1| hypothetical protein Psed_5709 ... 108 2e-22
gi|317506339|ref|ZP_07964151.1| hypothetical protein HMPREF9336_... 107 6e-22
gi|50955364|ref|YP_062652.1| hypothetical protein Lxx18040 [Leif... 106 1e-21
gi|296393248|ref|YP_003658132.1| hypothetical protein Srot_0822 ... 105 2e-21
>gi|15839817|ref|NP_334854.1| hypothetical protein MT0445 [Mycobacterium tuberculosis CDC1551]
gi|13879949|gb|AAK44668.1| hypothetical protein MT0445 [Mycobacterium tuberculosis CDC1551]
Length=170
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV
Sbjct 69 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 128
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 129 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 170
>gi|253797354|ref|YP_003030355.1| hypothetical protein TBMG_00431 [Mycobacterium tuberculosis KZN
1435]
gi|289552679|ref|ZP_06441889.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289744126|ref|ZP_06503504.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|253318857|gb|ACT23460.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289437311|gb|EFD19804.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289684654|gb|EFD52142.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|328457140|gb|AEB02563.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=150
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV
Sbjct 49 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 108
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 109 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 150
>gi|15607571|ref|NP_214944.1| hypothetical protein Rv0430 [Mycobacterium tuberculosis H37Rv]
gi|31791608|ref|NP_854101.1| hypothetical protein Mb0438 [Mycobacterium bovis AF2122/97]
gi|121636344|ref|YP_976567.1| hypothetical protein BCG_0469 [Mycobacterium bovis BCG str. Pasteur
1173P2]
69 more sequence titles
Length=102
Score = 203 bits (516), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV
Sbjct 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|296167941|ref|ZP_06850085.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896931|gb|EFG76557.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=102
Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 100/102 (99%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MDSAMARA RSGDDAE+ADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV
Sbjct 1 MDSAMARANRSGDDAEIADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|118617061|ref|YP_905393.1| hypothetical protein MUL_1377 [Mycobacterium ulcerans Agy99]
gi|118569171|gb|ABL03922.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=174
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/102 (96%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD AMARAIR+GDD+E+ADGLTRREHDILAFERQWWKFAGVKE+AIKELFSMSATRYYQV
Sbjct 73 MDGAMARAIRAGDDSEIADGLTRREHDILAFERQWWKFAGVKEDAIKELFSMSATRYYQV 132
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 133 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 174
>gi|41410017|ref|NP_962853.1| hypothetical protein MAP3919 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465930|ref|YP_883851.1| hypothetical protein MAV_4724 [Mycobacterium avium 104]
gi|254777163|ref|ZP_05218679.1| hypothetical protein MaviaA2_21189 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398850|gb|AAS06469.1| hypothetical protein MAP_3919 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118167217|gb|ABK68114.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460339|gb|EGO39239.1| Protein of unknown function (DUF3263) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=102
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/102 (98%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MDSAMARA RSGDDAE+ADGLTRREHDILAFERQWWKFAGVKE+AIKELFSMSATRYYQV
Sbjct 1 MDSAMARANRSGDDAEIADGLTRREHDILAFERQWWKFAGVKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|254818948|ref|ZP_05223949.1| hypothetical protein MintA_03431 [Mycobacterium intracellulare
ATCC 13950]
Length=102
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/102 (98%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MDSAMARA RSGDD+EVADGLTRREHDILAFERQWWKFAGVKE+AIKELFSMSATRYYQV
Sbjct 1 MDSAMARANRSGDDSEVADGLTRREHDILAFERQWWKFAGVKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|342859079|ref|ZP_08715733.1| hypothetical protein MCOL_09383 [Mycobacterium colombiense CECT
3035]
gi|342133320|gb|EGT86523.1| hypothetical protein MCOL_09383 [Mycobacterium colombiense CECT
3035]
Length=102
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/102 (97%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MDSAMARA RSGDD+E+ADGLTRREHDILAFERQWWKFAGVKE+AIKELFSMSATRYYQV
Sbjct 1 MDSAMARANRSGDDSEIADGLTRREHDILAFERQWWKFAGVKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|183980769|ref|YP_001849060.1| hypothetical protein MMAR_0745 [Mycobacterium marinum M]
gi|183174095|gb|ACC39205.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=102
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/102 (95%), Positives = 100/102 (99%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD AMARA R+GDD+E+ADGLTRREHDILAFERQWWKFAGVKE+AIKELFSMSATRYYQV
Sbjct 1 MDGAMARANRAGDDSEIADGLTRREHDILAFERQWWKFAGVKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|15828037|ref|NP_302300.1| hypothetical protein ML1927 [Mycobacterium leprae TN]
gi|221230514|ref|YP_002503930.1| hypothetical protein MLBr_01927 [Mycobacterium leprae Br4923]
gi|13093590|emb|CAC30882.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933621|emb|CAR72024.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=102
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/102 (94%), Positives = 97/102 (96%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD AMARA R+GDD E+ DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV
Sbjct 1 MDGAMARAHRAGDDVEIVDGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALA DPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAVDPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|240168905|ref|ZP_04747564.1| hypothetical protein MkanA1_06310 [Mycobacterium kansasii ATCC
12478]
Length=102
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/102 (93%), Positives = 99/102 (98%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD AMARA R+GDD+++A+GLTRREHDILAFERQWWKFAG KEEAIKELFSMSATRYYQV
Sbjct 1 MDGAMARANRAGDDSDIAEGLTRREHDILAFERQWWKFAGAKEEAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|145220779|ref|YP_001131457.1| Fis family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315442267|ref|YP_004075146.1| hypothetical protein Mspyr1_06050 [Mycobacterium sp. Spyr1]
gi|145213265|gb|ABP42669.1| transcriptional regulator, Fis family [Mycobacterium gilvum PYR-GCK]
gi|315260570|gb|ADT97311.1| hypothetical protein Mspyr1_06050 [Mycobacterium sp. Spyr1]
Length=102
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/102 (91%), Positives = 97/102 (96%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD A+ARA RSGDD+E DGLTRREHDILAFERQWWK+AG KE+AIKELFSMSATRYYQV
Sbjct 1 MDGAIARAERSGDDSEPTDGLTRREHDILAFERQWWKYAGSKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGF+VT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFDVT 102
>gi|120401748|ref|YP_951577.1| Fis family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119954566|gb|ABM11571.1| transcriptional regulator, Fis family [Mycobacterium vanbaalenii
PYR-1]
Length=102
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/102 (91%), Positives = 96/102 (95%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD A+ARA RSGDD E DGLTRREHDILAFERQWWK+AG KE+AIKELFSMSATRYYQV
Sbjct 1 MDGAIARAERSGDDTEPTDGLTRREHDILAFERQWWKYAGSKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGF+VT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFDVT 102
>gi|118469601|ref|YP_885237.1| hypothetical protein MSMEG_0833 [Mycobacterium smegmatis str.
MC2 155]
gi|118170888|gb|ABK71784.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=103
Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/102 (87%), Positives = 97/102 (96%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD AMAR +SGDD+++ DGLTRREHDILAFERQWWK+AG KE+AIKELFSMSATRYYQV
Sbjct 1 MDGAMARTEQSGDDSDLTDGLTRREHDILAFERQWWKYAGSKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGF+++
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFDIS 102
>gi|108797550|ref|YP_637747.1| hypothetical protein Mmcs_0570 [Mycobacterium sp. MCS]
gi|119866636|ref|YP_936588.1| Fis family transcriptional regulator [Mycobacterium sp. KMS]
gi|126433172|ref|YP_001068863.1| Fis family transcriptional regulator [Mycobacterium sp. JLS]
gi|108767969|gb|ABG06691.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692725|gb|ABL89798.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
gi|126232972|gb|ABN96372.1| transcriptional regulator, Fis family [Mycobacterium sp. JLS]
Length=102
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/102 (87%), Positives = 95/102 (94%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD AMA+ +SGDD+++ GLTRRE DILAFERQWWK+AG KE+AIKELFSMSATRYYQV
Sbjct 1 MDGAMAQTEQSGDDSDLPAGLTRREFDILAFERQWWKYAGSKEDAIKELFSMSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
>gi|343925514|ref|ZP_08765033.1| hypothetical protein GOALK_046_00530 [Gordonia alkanivorans NBRC
16433]
gi|343764606|dbj|GAA11959.1| hypothetical protein GOALK_046_00530 [Gordonia alkanivorans NBRC
16433]
Length=114
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/114 (78%), Positives = 93/114 (82%), Gaps = 12/114 (10%)
Query 1 MDSAMARAIRSG-----------DDAEV-ADGLTRREHDILAFERQWWKFAGVKEEAIKE 48
MD A AR+ G D EV ADGL+RREHDILAFERQWWK+AG KEEAIKE
Sbjct 1 MDGATARSQNDGEQPTPDNGAQPDPHEVGADGLSRREHDILAFERQWWKYAGAKEEAIKE 60
Query 49 LFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LF +SATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFE+T
Sbjct 61 LFGLSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEIT 114
>gi|262200672|ref|YP_003271880.1| hypothetical protein Gbro_0662 [Gordonia bronchialis DSM 43247]
gi|262084019|gb|ACY19987.1| hypothetical protein Gbro_0662 [Gordonia bronchialis DSM 43247]
Length=118
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/118 (75%), Positives = 94/118 (80%), Gaps = 16/118 (13%)
Query 1 MDSAMARAIRSGDDA---------------EV-ADGLTRREHDILAFERQWWKFAGVKEE 44
MD A AR+ + GD EV ADGL+RREHDILAFERQWWK+AG KEE
Sbjct 1 MDGAAARSQKQGDQPTPENAAADQSAVDPHEVGADGLSRREHDILAFERQWWKYAGAKEE 60
Query 45 AIKELFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
AIKELF +SATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFE+T
Sbjct 61 AIKELFGLSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEIT 118
>gi|226304982|ref|YP_002764940.1| hypothetical protein RER_14930 [Rhodococcus erythropolis PR4]
gi|226184097|dbj|BAH32201.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=116
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/84 (95%), Positives = 82/84 (98%), Gaps = 0/84 (0%)
Query 19 DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLV 78
DGLTRREHDIL+FERQWWK+AG KEEAIKELF MSATRYYQVLNALVDRPE+LAADPMLV
Sbjct 33 DGLTRREHDILSFERQWWKYAGAKEEAIKELFDMSATRYYQVLNALVDRPESLAADPMLV 92
Query 79 KRLRRLRASRQKARAARRLGFEVT 102
KRLRRLRASRQKARAARRLGFEVT
Sbjct 93 KRLRRLRASRQKARAARRLGFEVT 116
>gi|169631264|ref|YP_001704913.1| hypothetical protein MAB_4186c [Mycobacterium abscessus ATCC
19977]
gi|169243231|emb|CAM64259.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=115
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/115 (75%), Positives = 92/115 (80%), Gaps = 13/115 (11%)
Query 1 MDSAMARAIRS-------------GDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIK 47
MD A ARA +S D E+A GL+RREHDILAFERQWWK+AG KE+AIK
Sbjct 1 MDGAQARAEQSKAANAGEDSPAVGSDGVEIAAGLSRREHDILAFERQWWKYAGSKEDAIK 60
Query 48 ELFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
ELF MSATRYYQVLNALVDR EALAADPMLVKRLRR+RASRQKARAARRLGFEVT
Sbjct 61 ELFGMSATRYYQVLNALVDRQEALAADPMLVKRLRRMRASRQKARAARRLGFEVT 115
>gi|226361305|ref|YP_002779083.1| hypothetical protein ROP_18910 [Rhodococcus opacus B4]
gi|226239790|dbj|BAH50138.1| hypothetical protein [Rhodococcus opacus B4]
Length=113
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/91 (90%), Positives = 85/91 (94%), Gaps = 4/91 (4%)
Query 12 GDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEAL 71
GDD DGL+RREHDIL+FERQWWK+AG KEEAIKELF MSATRYYQVLNALVDRPEAL
Sbjct 27 GDD----DGLSRREHDILSFERQWWKYAGAKEEAIKELFDMSATRYYQVLNALVDRPEAL 82
Query 72 AADPMLVKRLRRLRASRQKARAARRLGFEVT 102
AADPMLVKRLRRLRASRQKARAARRLGF+VT
Sbjct 83 AADPMLVKRLRRLRASRQKARAARRLGFDVT 113
>gi|229493715|ref|ZP_04387499.1| transcriptional regulator, Fis family [Rhodococcus erythropolis
SK121]
gi|229319384|gb|EEN85221.1| transcriptional regulator, Fis family [Rhodococcus erythropolis
SK121]
Length=90
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/84 (95%), Positives = 82/84 (98%), Gaps = 0/84 (0%)
Query 19 DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLV 78
DGLTRREHDIL+FERQWWK+AG KEEAIKELF MSATRYYQVLNALVDRPE+LAADPMLV
Sbjct 7 DGLTRREHDILSFERQWWKYAGAKEEAIKELFDMSATRYYQVLNALVDRPESLAADPMLV 66
Query 79 KRLRRLRASRQKARAARRLGFEVT 102
KRLRRLRASRQKARAARRLGFEVT
Sbjct 67 KRLRRLRASRQKARAARRLGFEVT 90
>gi|312141213|ref|YP_004008549.1| hypothetical protein REQ_38850 [Rhodococcus equi 103S]
gi|311890552|emb|CBH49870.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=108
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/107 (81%), Positives = 94/107 (88%), Gaps = 5/107 (4%)
Query 1 MDSAMAR--AIRSGDDA--EVA-DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSAT 55
MD A AR + R G + EV DGLTRREHDIL+FERQWWK+AG KEEAIKELF+MSAT
Sbjct 1 MDGAAARNQSERPGSTSGNEVGEDGLTRREHDILSFERQWWKYAGAKEEAIKELFAMSAT 60
Query 56 RYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
RYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGF+++
Sbjct 61 RYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFDLS 107
>gi|111019168|ref|YP_702140.1| hypothetical protein RHA1_ro02175 [Rhodococcus jostii RHA1]
gi|110818698|gb|ABG93982.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=112
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/84 (93%), Positives = 82/84 (98%), Gaps = 0/84 (0%)
Query 19 DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLV 78
DGL+RREHDIL+FERQWWK+AG KEEAIKELF MSATRYYQVLNALVDRPEALAADPMLV
Sbjct 29 DGLSRREHDILSFERQWWKYAGAKEEAIKELFDMSATRYYQVLNALVDRPEALAADPMLV 88
Query 79 KRLRRLRASRQKARAARRLGFEVT 102
KRLRRLRASRQKARAARRLGF+VT
Sbjct 89 KRLRRLRASRQKARAARRLGFDVT 112
>gi|325673957|ref|ZP_08153647.1| hypothetical protein HMPREF0724_11429 [Rhodococcus equi ATCC
33707]
gi|325555222|gb|EGD24894.1| hypothetical protein HMPREF0724_11429 [Rhodococcus equi ATCC
33707]
Length=108
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/107 (80%), Positives = 92/107 (86%), Gaps = 5/107 (4%)
Query 1 MDSAMARAIRSGDDA----EVA-DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSAT 55
MD A AR D+ EV DGLTRREHDIL+FERQWWK+AG KEEAIKELF+MSAT
Sbjct 1 MDGAAARNQSERPDSTSGNEVGEDGLTRREHDILSFERQWWKYAGAKEEAIKELFAMSAT 60
Query 56 RYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
RYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGF+++
Sbjct 61 RYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFDLS 107
>gi|333989044|ref|YP_004521658.1| hypothetical protein JDM601_0404 [Mycobacterium sp. JDM601]
gi|333485012|gb|AEF34404.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=102
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/102 (85%), Positives = 95/102 (94%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD AMA+A RSGDD+E DGL+RREHDIL+FER WWK+AG KEEAIKE FS+SATRYYQV
Sbjct 1 MDGAMAQANRSGDDSEPTDGLSRREHDILSFERDWWKYAGAKEEAIKERFSLSATRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LNALVDRPEALAADPMLVKRLRRLR+SRQKARAARRLGF++T
Sbjct 61 LNALVDRPEALAADPMLVKRLRRLRSSRQKARAARRLGFDIT 102
>gi|296141404|ref|YP_003648647.1| hypothetical protein Tpau_3730 [Tsukamurella paurometabola DSM
20162]
gi|296029538|gb|ADG80308.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=108
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/84 (90%), Positives = 81/84 (97%), Gaps = 0/84 (0%)
Query 19 DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLV 78
DGLTRREHDILAFERQWWK+AG KE+AIKELF +SATRYYQVLNALVD PEALAADPMLV
Sbjct 25 DGLTRREHDILAFERQWWKYAGAKEDAIKELFGLSATRYYQVLNALVDTPEALAADPMLV 84
Query 79 KRLRRLRASRQKARAARRLGFEVT 102
KRLRR+RASRQKARAAR+LGFE+T
Sbjct 85 KRLRRVRASRQKARAARKLGFEIT 108
>gi|54027274|ref|YP_121516.1| hypothetical protein nfa53000 [Nocardia farcinica IFM 10152]
gi|54018782|dbj|BAD60152.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=104
Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/104 (78%), Positives = 88/104 (85%), Gaps = 3/104 (2%)
Query 1 MDSAMAR---AIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRY 57
MD A AR AI++ E GL+RRE DILAFERQWWK+AG KEEAI+ELF MS TRY
Sbjct 1 MDGAAARNPSAIQNSPSEEDDSGLSRRELDILAFERQWWKYAGAKEEAIRELFGMSPTRY 60
Query 58 YQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEV 101
YQVLNA+VDRPEALAADPMLVKRLRRLRASRQKARAARRLGF+V
Sbjct 61 YQVLNAVVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFQV 104
>gi|326383420|ref|ZP_08205107.1| hypothetical protein SCNU_10806 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197826|gb|EGD55013.1| hypothetical protein SCNU_10806 [Gordonia neofelifaecis NRRL
B-59395]
Length=118
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/84 (89%), Positives = 80/84 (96%), Gaps = 0/84 (0%)
Query 19 DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLV 78
DGLTRRE +IL FERQWWK+AG KE+AIKELF++SATRYYQVL ALVDRPEALAADPMLV
Sbjct 35 DGLTRREREILNFERQWWKYAGSKEDAIKELFNLSATRYYQVLGALVDRPEALAADPMLV 94
Query 79 KRLRRLRASRQKARAARRLGFEVT 102
KRLRRLRASRQKARAARRLGFE+T
Sbjct 95 KRLRRLRASRQKARAARRLGFEIT 118
>gi|333918226|ref|YP_004491807.1| hypothetical protein AS9A_0552 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480447|gb|AEF39007.1| hypothetical protein AS9A_0552 [Amycolicicoccus subflavus DQS3-9A1]
Length=115
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/83 (86%), Positives = 76/83 (92%), Gaps = 0/83 (0%)
Query 20 GLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVK 79
GL+RRE DILAFERQWWK+AG KEEAIK LF +SATRYYQVLNAL+DRPEAL+ADPMLVK
Sbjct 33 GLSRRERDILAFERQWWKYAGAKEEAIKNLFGLSATRYYQVLNALIDRPEALSADPMLVK 92
Query 80 RLRRLRASRQKARAARRLGFEVT 102
RLRRLRA RQKARAARRLGF T
Sbjct 93 RLRRLRAGRQKARAARRLGFRTT 115
>gi|296128547|ref|YP_003635797.1| hypothetical protein Cfla_0686 [Cellulomonas flavigena DSM 20109]
gi|296020362|gb|ADG73598.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109]
Length=106
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/88 (72%), Positives = 75/88 (86%), Gaps = 0/88 (0%)
Query 13 DDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALA 72
DD ADGL+ R+ +LAFERQWWK+AG KE+A++ELF MSATRYYQ+LNAL+D P ALA
Sbjct 18 DDERGADGLSERDRQVLAFERQWWKYAGAKEQAVRELFDMSATRYYQLLNALIDDPAALA 77
Query 73 ADPMLVKRLRRLRASRQKARAARRLGFE 100
DPMLVKRLRR+R+SRQ+AR ARRLG E
Sbjct 78 HDPMLVKRLRRMRSSRQRARTARRLGAE 105
>gi|336319544|ref|YP_004599512.1| hypothetical protein Celgi_0422 [Cellvibrio gilvus ATCC 13127]
gi|336103125|gb|AEI10944.1| hypothetical protein Celgi_0422 [Cellvibrio gilvus ATCC 13127]
Length=103
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/83 (76%), Positives = 73/83 (88%), Gaps = 0/83 (0%)
Query 18 ADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPML 77
ADGL+ R+ ILAFERQWWK+AG KE+AI+ELF +SATRYYQVLNAL+D P ALA DPML
Sbjct 20 ADGLSERDAAILAFERQWWKYAGAKEQAIRELFDLSATRYYQVLNALIDDPAALAHDPML 79
Query 78 VKRLRRLRASRQKARAARRLGFE 100
VKRLRR+R+SRQ+AR ARRLG E
Sbjct 80 VKRLRRMRSSRQRARTARRLGAE 102
>gi|269957718|ref|YP_003327507.1| hypothetical protein Xcel_2943 [Xylanimonas cellulosilytica DSM
15894]
gi|269306399|gb|ACZ31949.1| hypothetical protein Xcel_2943 [Xylanimonas cellulosilytica DSM
15894]
Length=93
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/85 (73%), Positives = 75/85 (89%), Gaps = 0/85 (0%)
Query 14 DAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAA 73
DA V L+ R+ +ILAFERQWWK+AG KE+A++ELF +SATRYYQVLNAL+D PEALAA
Sbjct 5 DAPVVPALSERDREILAFERQWWKYAGAKEQAVRELFGLSATRYYQVLNALIDTPEALAA 64
Query 74 DPMLVKRLRRLRASRQKARAARRLG 98
DPMLVKRLRRLRA+RQ+AR+ARR+
Sbjct 65 DPMLVKRLRRLRATRQRARSARRVS 89
>gi|317125977|ref|YP_004100089.1| hypothetical protein Intca_2863 [Intrasporangium calvum DSM 43043]
gi|315590065|gb|ADU49362.1| hypothetical protein Intca_2863 [Intrasporangium calvum DSM 43043]
Length=97
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/79 (76%), Positives = 72/79 (92%), Gaps = 0/79 (0%)
Query 21 LTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKR 80
L+ R+ +ILAFERQWWK+AG KE+AIKELF MS+TRYYQVLNAL+D+P AL ADPML+KR
Sbjct 17 LSDRDLEILAFERQWWKYAGSKEQAIKELFDMSSTRYYQVLNALLDQPAALDADPMLIKR 76
Query 81 LRRLRASRQKARAARRLGF 99
LRR+RASRQ+AR +RRLGF
Sbjct 77 LRRMRASRQRARTSRRLGF 95
>gi|229819311|ref|YP_002880837.1| hypothetical protein Bcav_0814 [Beutenbergia cavernae DSM 12333]
gi|229565224|gb|ACQ79075.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
Length=97
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/89 (70%), Positives = 77/89 (87%), Gaps = 1/89 (1%)
Query 14 DAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAA 73
DAE + GL+ R+ ILAFERQWW++AG KE AI+ELF MSATRYYQVLN L+D P+ALAA
Sbjct 10 DAEPS-GLSERDAAILAFERQWWRYAGAKESAIRELFDMSATRYYQVLNTLIDTPDALAA 68
Query 74 DPMLVKRLRRLRASRQKARAARRLGFEVT 102
DPMLVKRLRR+R++RQ+AR+ARRL ++T
Sbjct 69 DPMLVKRLRRMRSARQQARSARRLSPDLT 97
>gi|302530615|ref|ZP_07282957.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302439510|gb|EFL11326.1| transcriptional regulator [Streptomyces sp. AA4]
Length=102
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/102 (61%), Positives = 77/102 (76%), Gaps = 0/102 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD+A + A E GLT RE DILAFERQWW+ AG KE AI+E F +S+TRYYQ+
Sbjct 1 MDAAESMAGNQPSPPENVGGLTERELDILAFERQWWRHAGAKENAIRERFGLSSTRYYQL 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT 102
LN L+ +PEA+AADPMLVKRLR+ RA+RQ+ R ARRLG E++
Sbjct 61 LNTLLAKPEAVAADPMLVKRLRKTRAARQRKRGARRLGIELS 102
>gi|319949866|ref|ZP_08023876.1| hypothetical protein ES5_10257 [Dietzia cinnamea P4]
gi|319436468|gb|EFV91578.1| hypothetical protein ES5_10257 [Dietzia cinnamea P4]
Length=109
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/104 (63%), Positives = 79/104 (76%), Gaps = 5/104 (4%)
Query 3 SAMARAIRSGDDAE----VADG-LTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRY 57
+A R +GDD E AD L+ R+ +L FERQWWKFAG KEEAI++ F MS TRY
Sbjct 5 AAATREATTGDDREDELHAADPVLSERDQKMLEFERQWWKFAGSKEEAIRQQFDMSGTRY 64
Query 58 YQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEV 101
+Q+LN L+DRPEALAADP+LVKRLRR+R+SRQKARAAR LG +
Sbjct 65 FQILNDLIDRPEALAADPLLVKRLRRMRSSRQKARAARNLGMRL 108
>gi|334338058|ref|YP_004543210.1| hypothetical protein Isova_2613 [Isoptericola variabilis 225]
gi|334108426|gb|AEG45316.1| hypothetical protein Isova_2613 [Isoptericola variabilis 225]
Length=107
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/95 (66%), Positives = 76/95 (80%), Gaps = 2/95 (2%)
Query 6 ARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALV 65
A+A SG E L+ R+ +ILAFERQWWK+AG KE+A++ELF +S TRYYQVLNAL+
Sbjct 13 AQAPASGTTQE--GELSDRDREILAFERQWWKYAGAKEQAVRELFGLSPTRYYQVLNALI 70
Query 66 DRPEALAADPMLVKRLRRLRASRQKARAARRLGFE 100
D P ALA DPMLVKRLRR+RA+RQ+AR+ARRL E
Sbjct 71 DSPAALAHDPMLVKRLRRMRATRQRARSARRLADE 105
>gi|220911665|ref|YP_002486974.1| hypothetical protein Achl_0890 [Arthrobacter chlorophenolicus
A6]
gi|219858543|gb|ACL38885.1| hypothetical protein Achl_0890 [Arthrobacter chlorophenolicus
A6]
Length=117
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/78 (75%), Positives = 66/78 (85%), Gaps = 0/78 (0%)
Query 21 LTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKR 80
LT RE ILA ERQWWK+AG KE+A++ELF +SAT YYQVLNAL+DR +ALA DPMLVKR
Sbjct 37 LTEREQQILALERQWWKYAGAKEQAVRELFDLSATHYYQVLNALIDREDALAHDPMLVKR 96
Query 81 LRRLRASRQKARAARRLG 98
LRRLR SR +AR ARRLG
Sbjct 97 LRRLRTSRHRARTARRLG 114
>gi|300790373|ref|YP_003770664.1| hypothetical protein AMED_8567 [Amycolatopsis mediterranei U32]
gi|299799887|gb|ADJ50262.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340532057|gb|AEK47262.1| hypothetical protein RAM_43975 [Amycolatopsis mediterranei S699]
Length=102
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/101 (60%), Positives = 76/101 (76%), Gaps = 0/101 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD+A + A + GLT RE +ILAFERQWW+ AG KE AI+E F +SATRYYQ+
Sbjct 1 MDAAESMAEPQPSPPKPVPGLTEREVEILAFERQWWRHAGAKENAIRERFDLSATRYYQL 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEV 101
LN L+++PEA+ ADPMLVKRLR+ RA+RQ+ R ARRLG E+
Sbjct 61 LNKLLEKPEAIEADPMLVKRLRKTRAARQRKRGARRLGIEL 101
>gi|119962707|ref|YP_946788.1| hypothetical protein AAur_0998 [Arthrobacter aurescens TC1]
gi|119949566|gb|ABM08477.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
Length=103
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 66/78 (85%), Gaps = 0/78 (0%)
Query 21 LTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKR 80
L+ R+ +LA ERQWWK+AG KE+AI+ELF +SAT YYQ+LNAL+D +ALA DPMLVKR
Sbjct 23 LSERDQQMLALERQWWKYAGAKEQAIRELFDLSATHYYQILNALIDTEDALAHDPMLVKR 82
Query 81 LRRLRASRQKARAARRLG 98
LRRLR SRQ+AR ARRLG
Sbjct 83 LRRLRTSRQRARTARRLG 100
>gi|269796439|ref|YP_003315894.1| hypothetical protein Sked_31630 [Sanguibacter keddieii DSM 10542]
gi|269098624|gb|ACZ23060.1| hypothetical protein Sked_31630 [Sanguibacter keddieii DSM 10542]
Length=124
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/93 (60%), Positives = 71/93 (77%), Gaps = 0/93 (0%)
Query 4 AMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNA 63
+ A A + D+ GLT R+ +L FE+QWWK+AG KE+A++ELF +SAT+YYQVLN
Sbjct 29 STAGAEPTTDEQPTHPGLTERDAAVLDFEKQWWKYAGAKEQAVRELFGLSATQYYQVLNT 88
Query 64 LVDRPEALAADPMLVKRLRRLRASRQKARAARR 96
L+D P ALAA+PMLVKRLRR+RASRQ+ R RR
Sbjct 89 LIDSPAALAAEPMLVKRLRRMRASRQRERTQRR 121
>gi|116669340|ref|YP_830273.1| hypothetical protein Arth_0775 [Arthrobacter sp. FB24]
gi|116609449|gb|ABK02173.1| conserved hypothetical protein [Arthrobacter sp. FB24]
Length=90
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/78 (70%), Positives = 65/78 (84%), Gaps = 0/78 (0%)
Query 21 LTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKR 80
L+ R+ +LA ERQWWK+AG KE+AI+ELF +SAT YYQ+LN L+D +ALA DPMLVKR
Sbjct 10 LSERDKQMLALERQWWKYAGAKEQAIRELFDLSATHYYQILNTLIDTEDALAQDPMLVKR 69
Query 81 LRRLRASRQKARAARRLG 98
LRRLR SRQ+AR ARRLG
Sbjct 70 LRRLRTSRQRARTARRLG 87
>gi|325962237|ref|YP_004240143.1| hypothetical protein Asphe3_08110 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468324|gb|ADX72009.1| hypothetical protein Asphe3_08110 [Arthrobacter phenanthrenivorans
Sphe3]
Length=109
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/78 (70%), Positives = 65/78 (84%), Gaps = 0/78 (0%)
Query 21 LTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKR 80
L+ R+ +LA ERQWWK+AG KE+AI+ELF +SAT YYQ+LNAL+D +ALA DPMLVKR
Sbjct 29 LSERDQRMLALERQWWKYAGAKEQAIRELFDLSATHYYQLLNALIDTEDALAHDPMLVKR 88
Query 81 LRRLRASRQKARAARRLG 98
LRRLR SR +AR ARRLG
Sbjct 89 LRRLRTSRHRARTARRLG 106
>gi|134097126|ref|YP_001102787.1| hypothetical protein SACE_0515 [Saccharopolyspora erythraea NRRL
2338]
gi|291009657|ref|ZP_06567630.1| hypothetical protein SeryN2_34510 [Saccharopolyspora erythraea
NRRL 2338]
gi|133909749|emb|CAL99861.1| hypothetical protein SACE_0515 [Saccharopolyspora erythraea NRRL
2338]
Length=155
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/89 (63%), Positives = 70/89 (79%), Gaps = 1/89 (1%)
Query 14 DAEVADG-LTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALA 72
D +DG L RE ILAFERQWWK AG K++AI+ELF MS++RYYQ+LNAL+D P A
Sbjct 66 DPLPSDGELGEREWSILAFERQWWKSAGRKDQAIRELFDMSSSRYYQLLNALLDNPAAFR 125
Query 73 ADPMLVKRLRRLRASRQKARAARRLGFEV 101
ADPML+KRLR++R SRQ+ R+AR LG E+
Sbjct 126 ADPMLIKRLRKVRTSRQRGRSARDLGIEL 154
>gi|117927308|ref|YP_871859.1| hypothetical protein Acel_0097 [Acidothermus cellulolyticus 11B]
gi|117647771|gb|ABK51873.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B]
Length=103
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/90 (72%), Positives = 75/90 (84%), Gaps = 0/90 (0%)
Query 11 SGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEA 70
S D V GLT E IL FERQWWK+AG KE+A+++LF MSATRYYQ LNAL+DRPEA
Sbjct 13 SEDHHPVESGLTDLERRILEFERQWWKYAGAKEQAMRDLFGMSATRYYQTLNALIDRPEA 72
Query 71 LAADPMLVKRLRRLRASRQKARAARRLGFE 100
LAADPMLVKRLRRLR++RQ+AR+ARRLG +
Sbjct 73 LAADPMLVKRLRRLRSARQRARSARRLGLQ 102
>gi|258654975|ref|YP_003204131.1| hypothetical protein Namu_4868 [Nakamurella multipartita DSM
44233]
gi|258558200|gb|ACV81142.1| hypothetical protein Namu_4868 [Nakamurella multipartita DSM
44233]
Length=101
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/101 (64%), Positives = 75/101 (75%), Gaps = 0/101 (0%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
MD+A A D L RR+ DILAFERQWW++AG KE+AIKE F +S TRYYQV
Sbjct 1 MDTAAAPQPSGDRDPSAGAELGRRDRDILAFERQWWQYAGAKEQAIKERFDLSPTRYYQV 60
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEV 101
LN ++D P ALA DP+LV+RLRRLR SRQK R+ARRLGFEV
Sbjct 61 LNEIIDNPAALAEDPLLVRRLRRLRTSRQKTRSARRLGFEV 101
>gi|331699450|ref|YP_004335689.1| hypothetical protein Psed_5709 [Pseudonocardia dioxanivorans
CB1190]
gi|326954139|gb|AEA27836.1| hypothetical protein Psed_5709 [Pseudonocardia dioxanivorans
CB1190]
Length=101
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 81/100 (81%), Gaps = 1/100 (1%)
Query 1 MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQV 60
M+SA + A AD L RRE +ILAFE QWWK+AG KE+AI+ELF MSATRYYQV
Sbjct 1 MESATEHGV-PDPAAGPADELDRREREILAFEGQWWKYAGAKEQAIRELFDMSATRYYQV 59
Query 61 LNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFE 100
LNAL+D+PEALAADP+LV+RLRRLRASRQ+ RAARRLG E
Sbjct 60 LNALIDKPEALAADPLLVRRLRRLRASRQRTRAARRLGIE 99
>gi|317506339|ref|ZP_07964151.1| hypothetical protein HMPREF9336_00520 [Segniliparus rugosus ATCC
BAA-974]
gi|316255349|gb|EFV14607.1| hypothetical protein HMPREF9336_00520 [Segniliparus rugosus ATCC
BAA-974]
Length=110
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/94 (69%), Positives = 77/94 (82%), Gaps = 0/94 (0%)
Query 5 MARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNAL 64
+ R S ++ +GL+RRE ++LAFERQWWK AG KE A++ELF MSATRYYQ+LNAL
Sbjct 11 LPRLPESAEELAGGEGLSRREREVLAFERQWWKHAGSKEAAVRELFGMSATRYYQLLNAL 70
Query 65 VDRPEALAADPMLVKRLRRLRASRQKARAARRLG 98
+DRPEAL ADP+LVKRLRRLRA+R KAR ARRLG
Sbjct 71 IDRPEALRADPLLVKRLRRLRAARTKARVARRLG 104
>gi|50955364|ref|YP_062652.1| hypothetical protein Lxx18040 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951846|gb|AAT89547.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length=99
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/79 (68%), Positives = 61/79 (78%), Gaps = 0/79 (0%)
Query 19 DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLV 78
+GLT RE DILAFERQW + AG KE+AI+E F +SA RYYQ+L AL+DRPEAL DPMLV
Sbjct 17 EGLTGRETDILAFERQWSRHAGAKEQAIREEFGISAARYYQILGALIDRPEALRHDPMLV 76
Query 79 KRLRRLRASRQKARAARRL 97
KRL RLR +R R AR L
Sbjct 77 KRLLRLRETRSAVRQARTL 95
>gi|296393248|ref|YP_003658132.1| hypothetical protein Srot_0822 [Segniliparus rotundus DSM 44985]
gi|296180395|gb|ADG97301.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=107
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/80 (78%), Positives = 71/80 (89%), Gaps = 0/80 (0%)
Query 19 DGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLV 78
+GL+RRE ++LAFERQWWK AG KE A++ELF MSATRYYQ LNAL+DRPEAL ADP+LV
Sbjct 22 EGLSRREREVLAFERQWWKHAGSKEAAVRELFGMSATRYYQFLNALIDRPEALRADPLLV 81
Query 79 KRLRRLRASRQKARAARRLG 98
KRLRRLRA+R KAR ARRLG
Sbjct 82 KRLRRLRAARSKARVARRLG 101
Lambda K H
0.323 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128294982110
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40