BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0441c
Length=142
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607582|ref|NP_214955.1| hypothetical protein Rv0441c [Mycob... 280 7e-74
gi|340625466|ref|YP_004743918.1| hypothetical protein MCAN_04391... 278 3e-73
gi|254230790|ref|ZP_04924117.1| hypothetical protein TBCG_00433 ... 277 3e-73
gi|294995945|ref|ZP_06801636.1| hypothetical protein Mtub2_15953... 277 4e-73
gi|148821637|ref|YP_001286391.1| hypothetical protein TBFG_10446... 254 2e-66
gi|118617076|ref|YP_905408.1| hypothetical protein MUL_1394 [Myc... 198 2e-49
gi|240169821|ref|ZP_04748480.1| hypothetical protein MkanA1_1093... 186 9e-46
gi|183980784|ref|YP_001849075.1| hypothetical protein MMAR_0760 ... 186 1e-45
gi|296167997|ref|ZP_06850110.1| conserved hypothetical protein [... 181 4e-44
gi|342859053|ref|ZP_08715707.1| hypothetical protein MCOL_09253 ... 179 2e-43
gi|41410036|ref|NP_962872.1| hypothetical protein MAP3938c [Myco... 176 9e-43
gi|118464484|ref|YP_883832.1| hypothetical protein MAV_4705 [Myc... 175 2e-42
gi|254819771|ref|ZP_05224772.1| hypothetical protein MintA_07599... 162 1e-38
gi|118471680|ref|YP_885285.1| hypothetical protein MSMEG_0882 [M... 114 6e-24
gi|120401781|ref|YP_951610.1| pyridoxamine 5'-phosphate oxidase-... 106 1e-21
gi|145220744|ref|YP_001131422.1| pyridoxamine 5'-phosphate oxida... 102 2e-20
gi|333989074|ref|YP_004521688.1| hypothetical protein JDM601_043... 102 3e-20
gi|333989073|ref|YP_004521687.1| hypothetical protein JDM601_043... 97.4 6e-19
gi|331694172|ref|YP_004330411.1| pyridoxamine 5'-phosphate oxida... 76.6 1e-12
gi|88812941|ref|ZP_01128185.1| hypothetical protein NB231_00335 ... 75.9 2e-12
gi|258593238|emb|CBE69577.1| conserved protein of unknown functi... 70.9 6e-11
gi|258593250|emb|CBE69589.1| conserved protein of unknown functi... 65.9 2e-09
gi|334112084|ref|ZP_08486349.1| pyridoxamine 5'-phosphate oxidas... 59.3 2e-07
gi|119715206|ref|YP_922171.1| pyridoxamine 5'-phosphate oxidase-... 57.8 6e-07
gi|336120774|ref|YP_004575560.1| hypothetical protein MLP_51430 ... 53.9 7e-06
gi|326329043|ref|ZP_08195372.1| hypothetical protein NBCG_00478 ... 41.6 0.035
gi|289761021|ref|ZP_06520399.1| conserved hypothetical protein [... 40.8 0.072
>gi|15607582|ref|NP_214955.1| hypothetical protein Rv0441c [Mycobacterium tuberculosis H37Rv]
gi|15839829|ref|NP_334866.1| hypothetical protein MT0457 [Mycobacterium tuberculosis CDC1551]
gi|31791619|ref|NP_854112.1| hypothetical protein Mb0449c [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=142
Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/142 (99%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 1 VGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
+GAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI
Sbjct 1 MGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD
Sbjct 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
Query 121 AAPDSPTAAKGCLHDCVVFSVP 142
AAPDSPTAAKGCLHDCVVFSVP
Sbjct 121 AAPDSPTAAKGCLHDCVVFSVP 142
>gi|340625466|ref|YP_004743918.1| hypothetical protein MCAN_04391 [Mycobacterium canettii CIPT
140010059]
gi|340003656|emb|CCC42779.1| hypothetical protein MCAN_04391 [Mycobacterium canettii CIPT
140010059]
Length=142
Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/142 (99%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 1 VGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
+GAKKVDLKRLAAALPDYPFAYLITVDDG+RVHTVAVEPVLRELPDGPDGPRAVVDVGLI
Sbjct 1 MGAKKVDLKRLAAALPDYPFAYLITVDDGYRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD
Sbjct 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
Query 121 AAPDSPTAAKGCLHDCVVFSVP 142
AAPDSPTAAKGCLHDCVVFSVP
Sbjct 121 AAPDSPTAAKGCLHDCVVFSVP 142
>gi|254230790|ref|ZP_04924117.1| hypothetical protein TBCG_00433 [Mycobacterium tuberculosis C]
gi|124599849|gb|EAY58859.1| hypothetical protein TBCG_00433 [Mycobacterium tuberculosis C]
Length=142
Score = 277 bits (709), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)
Query 1 VGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
+GAKKVDLKRLAAALPDYPFAYLITVDDGHRVH VAVEPVLRELPDGPDGPRAVVDVGLI
Sbjct 1 MGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHMVAVEPVLRELPDGPDGPRAVVDVGLI 60
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD
Sbjct 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
Query 121 AAPDSPTAAKGCLHDCVVFSVP 142
AAPDSPTAAKGCLHDCVVFSVP
Sbjct 121 AAPDSPTAAKGCLHDCVVFSVP 142
>gi|294995945|ref|ZP_06801636.1| hypothetical protein Mtub2_15953 [Mycobacterium tuberculosis
210]
Length=142
Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 140/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)
Query 1 VGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
+GAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI
Sbjct 1 MGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD
Sbjct 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
Query 121 AAPDSPTAAKGCLHDCVVFSVP 142
AAPDS TAAKGCLHDCVVFSVP
Sbjct 121 AAPDSATAAKGCLHDCVVFSVP 142
>gi|148821637|ref|YP_001286391.1| hypothetical protein TBFG_10446 [Mycobacterium tuberculosis F11]
gi|148720164|gb|ABR04789.1| hypothetical protein TBFG_10446 [Mycobacterium tuberculosis F11]
Length=128
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/128 (99%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 15 LPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTRQNLAHRSEV 74
+PDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTRQNLAHRSEV
Sbjct 1 MPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTRQNLAHRSEV 60
Query 75 TLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPDSPTAAKGCLH 134
TLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPDSPTAAKGCLH
Sbjct 61 TLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPDSPTAAKGCLH 120
Query 135 DCVVFSVP 142
DCVVFSVP
Sbjct 121 DCVVFSVP 128
>gi|118617076|ref|YP_905408.1| hypothetical protein MUL_1394 [Mycobacterium ulcerans Agy99]
gi|118569186|gb|ABL03937.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=139
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/142 (72%), Positives = 113/142 (80%), Gaps = 4/142 (2%)
Query 1 VGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
+ AKKVDLKRLA A DYPFAYLITVDD H VHTV VEPVLR LPDGPDGPRAV++VGLI
Sbjct 1 MAAKKVDLKRLADAFTDYPFAYLITVDDDHHVHTVTVEPVLRGLPDGPDGPRAVIEVGLI 60
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
GGRTR NLA + TLLWPP +P GYSLIVDGRA+ S AG +TA+C V+P +ALLHR+
Sbjct 61 GGRTRANLASHGDATLLWPPPEPGGYSLIVDGRAEVSYAG--TETAQCAVLPTKALLHRN 118
Query 121 AAPDSPTAAKGCLHDCVVFSVP 142
A DS A GCLHDCVVFS P
Sbjct 119 A--DSAATASGCLHDCVVFSEP 138
>gi|240169821|ref|ZP_04748480.1| hypothetical protein MkanA1_10937 [Mycobacterium kansasii ATCC
12478]
Length=131
Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 99/142 (70%), Positives = 110/142 (78%), Gaps = 11/142 (7%)
Query 1 VGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
+GAKKVDL RLAAAL DYPFAYLITVDD +R HTV VEPVLR AV+DVGLI
Sbjct 1 MGAKKVDLTRLAAALADYPFAYLITVDDDYRAHTVTVEPVLRG---------AVLDVGLI 51
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
GG TR+NLA R +VTLLWPP +P GYSLIVDG A+ + AG ++T R GVVP RALLHR+
Sbjct 52 GGGTRKNLAQRRDVTLLWPPREPGGYSLIVDGSAEVAGAG--EETVRLGVVPTRALLHRE 109
Query 121 AAPDSPTAAKGCLHDCVVFSVP 142
A PDSP AAKGC HDCVVFS P
Sbjct 110 ADPDSPAAAKGCRHDCVVFSAP 131
>gi|183980784|ref|YP_001849075.1| hypothetical protein MMAR_0760 [Mycobacterium marinum M]
gi|183174110|gb|ACC39220.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=129
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/132 (72%), Positives = 106/132 (81%), Gaps = 4/132 (3%)
Query 11 LAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTRQNLAH 70
+A AL DYPFAYLITVDD H VHTV VEPVLR LPDGPDGPRAV++VGLIGGRTR NLA
Sbjct 1 MADALTDYPFAYLITVDDDHHVHTVTVEPVLRGLPDGPDGPRAVIEVGLIGGRTRANLAS 60
Query 71 RSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPDSPTAAK 130
+ TLLWPP +P GYSLIVDGRA+ SDAG +TA+C V+P +ALLHR+A DS A
Sbjct 61 HGDATLLWPPPEPGGYSLIVDGRAEVSDAG--TETAQCAVLPTKALLHRNA--DSAATAS 116
Query 131 GCLHDCVVFSVP 142
GCLHDCVVFS P
Sbjct 117 GCLHDCVVFSEP 128
>gi|296167997|ref|ZP_06850110.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896923|gb|EFG76550.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=133
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/137 (68%), Positives = 106/137 (78%), Gaps = 9/137 (6%)
Query 4 KKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGR 63
K+VD++RLAAALP+YP+AYLITVDD +R HTV VEP LRE A +D+GLIGGR
Sbjct 5 KQVDIERLAAALPNYPYAYLITVDDDYRAHTVTVEPRLRE---------ATLDIGLIGGR 55
Query 64 TRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAP 123
TRQNLA R +VTLLWPP++P GYSLIVDG A+ + D R GVVP RALLHR+A P
Sbjct 56 TRQNLARRRDVTLLWPPTEPGGYSLIVDGTAEVAPDNRAGDAVRLGVVPTRALLHREADP 115
Query 124 DSPTAAKGCLHDCVVFS 140
DSP AAKGCLHDCVVFS
Sbjct 116 DSPGAAKGCLHDCVVFS 132
>gi|342859053|ref|ZP_08715707.1| hypothetical protein MCOL_09253 [Mycobacterium colombiense CECT
3035]
gi|342133294|gb|EGT86497.1| hypothetical protein MCOL_09253 [Mycobacterium colombiense CECT
3035]
Length=131
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/139 (69%), Positives = 109/139 (79%), Gaps = 13/139 (9%)
Query 4 KKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGR 63
KKVD++ L+ AL DYP+AYLITVDDG+RVHTV VEP LR A +DVGLIGGR
Sbjct 5 KKVDIQALSDALADYPYAYLITVDDGYRVHTVTVEPQLRG---------ATLDVGLIGGR 55
Query 64 TRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAP 123
TR NLA R++VTLLWPP++P GYSLIVDG A+ +DAG +TAR VVP RALLHRDA
Sbjct 56 TRNNLAQRADVTLLWPPAEPGGYSLIVDGTAEVTDAGA--ETARLTVVPTRALLHRDA-- 111
Query 124 DSPTAAKGCLHDCVVFSVP 142
DSP AAKGCLHDCVVFS+P
Sbjct 112 DSPDAAKGCLHDCVVFSLP 130
>gi|41410036|ref|NP_962872.1| hypothetical protein MAP3938c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254777143|ref|ZP_05218659.1| hypothetical protein MaviaA2_21089 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398869|gb|AAS06488.1| hypothetical protein MAP_3938c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460320|gb|EGO39220.1| hypothetical protein MAPs_41160 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=130
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/139 (68%), Positives = 106/139 (77%), Gaps = 14/139 (10%)
Query 4 KKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGR 63
KKVDL+ LA AL DYP+AYLITVDD +R HTV VEPVLRE +++DVGLIGGR
Sbjct 5 KKVDLQALADALADYPYAYLITVDDDYRAHTVTVEPVLRE---------SILDVGLIGGR 55
Query 64 TRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAP 123
T+QNLA R +VTLLWPP++P GYSLIVDG AQ S+AG D R V P RALLHRDA
Sbjct 56 TQQNLARRRDVTLLWPPTEPGGYSLIVDGTAQVSEAG---DAVRLAVAPTRALLHRDA-- 110
Query 124 DSPTAAKGCLHDCVVFSVP 142
DS AAKGCLHDCVVFS+P
Sbjct 111 DSADAAKGCLHDCVVFSLP 129
>gi|118464484|ref|YP_883832.1| hypothetical protein MAV_4705 [Mycobacterium avium 104]
gi|118165771|gb|ABK66668.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=130
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/139 (67%), Positives = 106/139 (77%), Gaps = 14/139 (10%)
Query 4 KKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGR 63
KKVDL+ LA AL DYP+AYLITVDD +R HTV VEPVLRE +++DVGLIGGR
Sbjct 5 KKVDLQALADALADYPYAYLITVDDDYRAHTVTVEPVLRE---------SILDVGLIGGR 55
Query 64 TRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAP 123
T+QNLA R +VT+LWPP++P GYSLIVDG AQ S+AG D R V P RALLHRDA
Sbjct 56 TQQNLARRRDVTVLWPPTEPGGYSLIVDGTAQVSEAG---DAVRLAVAPTRALLHRDA-- 110
Query 124 DSPTAAKGCLHDCVVFSVP 142
DS AAKGCLHDCVVFS+P
Sbjct 111 DSADAAKGCLHDCVVFSLP 129
>gi|254819771|ref|ZP_05224772.1| hypothetical protein MintA_07599 [Mycobacterium intracellulare
ATCC 13950]
Length=133
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/139 (64%), Positives = 99/139 (72%), Gaps = 11/139 (7%)
Query 4 KKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGR 63
KKVD LA AL DYP+AYLITVDD +R HTV VEP LR ++VGLIGGR
Sbjct 5 KKVDFAALADALVDYPYAYLITVDDEYRSHTVTVEPELRG---------QTLEVGLIGGR 55
Query 64 TRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAP 123
T+QNLA R +VTLLWPP++P GYSLIVDG A+ S G D R V P RALLHRDA
Sbjct 56 TQQNLARRRDVTLLWPPAEPGGYSLIVDGAAEVSPEGGAGDAVRLTVTPTRALLHRDA-- 113
Query 124 DSPTAAKGCLHDCVVFSVP 142
DSP AA+GCLHDCVVFS+P
Sbjct 114 DSPDAARGCLHDCVVFSLP 132
>gi|118471680|ref|YP_885285.1| hypothetical protein MSMEG_0882 [Mycobacterium smegmatis str.
MC2 155]
gi|118172967|gb|ABK73863.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=127
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/137 (54%), Positives = 90/137 (66%), Gaps = 16/137 (11%)
Query 5 KVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRT 64
KVDLK+LA L DY FAYL+TVDD + HTVA +P + DG V++VG +G RT
Sbjct 4 KVDLKQLADKLTDYTFAYLVTVDDNYHAHTVACDP---RVVDG------VIEVGSLGDRT 54
Query 65 RQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPD 124
R+NLA VTL+WPP PSG+SLIVDG+A+ AG DD A +VP RA+LHR +
Sbjct 55 RRNLAVHDNVTLIWPPRSPSGFSLIVDGQAR---AGATDD-APPQIVPARAVLHRKRSTG 110
Query 125 S-PTAAKGCLHDCVVFS 140
S PTAA + DCVV S
Sbjct 111 SGPTAAS--IDDCVVLS 125
>gi|120401781|ref|YP_951610.1| pyridoxamine 5'-phosphate oxidase-like protein [Mycobacterium
vanbaalenii PYR-1]
gi|119954599|gb|ABM11604.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
[Mycobacterium vanbaalenii PYR-1]
Length=124
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/133 (46%), Positives = 77/133 (58%), Gaps = 16/133 (12%)
Query 5 KVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRT 64
KVDL RLA L ++ FAYL+TV D +R HTVAV+PVL V + +G RT
Sbjct 4 KVDLDRLAETLGNFSFAYLVTVGDDYRAHTVAVDPVLSG---------GGVRIASVGTRT 54
Query 65 RQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPD 124
+N A +VTL+WPP +P GY+LI+DGRA+ G V P A+LHR PD
Sbjct 55 GRNAAAHPDVTLVWPPREPGGYTLIIDGRAEVDGNG-------IRVQPNSAVLHRKPKPD 107
Query 125 SPTAAKGCLHDCV 137
SP + GC DCV
Sbjct 108 SPPSVSGCGDDCV 120
>gi|145220744|ref|YP_001131422.1| pyridoxamine 5'-phosphate oxidase-like protein [Mycobacterium
gilvum PYR-GCK]
gi|315442303|ref|YP_004075182.1| pyridoxamine 5'-phosphate oxidase [Mycobacterium sp. Spyr1]
gi|145213230|gb|ABP42634.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
[Mycobacterium gilvum PYR-GCK]
gi|315260606|gb|ADT97347.1| Pyridoxamine 5'-phosphate oxidase [Mycobacterium sp. Spyr1]
Length=121
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/135 (48%), Positives = 78/135 (58%), Gaps = 21/135 (15%)
Query 5 KVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVL--RELPDGPDGPRAVVDVGLIGG 62
VDL +LA L D+ +AYL+TV D +R HTVAV PVL REL +G +G
Sbjct 4 TVDLDKLAETLADFAYAYLVTVGDDYRAHTVAVTPVLSGREL-----------HIGSVGN 52
Query 63 RTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAA 122
TR+N A VTLLWPP +P GY+LIVDG A +D G V P A+LHR A
Sbjct 53 STRRNAAAHPTVTLLWPPREPGGYTLIVDGGAAVNDDG-------VSVRPTGAVLHRPAT 105
Query 123 PDSPTAAKGCLHDCV 137
P PTA+ GC DC+
Sbjct 106 PGVPTAS-GCGDDCL 119
>gi|333989074|ref|YP_004521688.1| hypothetical protein JDM601_0434 [Mycobacterium sp. JDM601]
gi|333485042|gb|AEF34434.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/135 (46%), Positives = 79/135 (59%), Gaps = 15/135 (11%)
Query 3 AKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGG 62
AK VDL RLA LP YPFA+L+TV D +RV T A+ P DG R V+VG +G
Sbjct 5 AKTVDLARLAELLPGYPFAFLVTVGDDYRVRTTAITPTF-------DGAR--VNVGPVGA 55
Query 63 RTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAA 122
R+N++ R+ VTL+WP + + YSL+VDG A+ PDD V P +ALLHR
Sbjct 56 HGRENMSARAGVTLVWPAREVTEYSLVVDGYAEL----PDDPAGPVLVAPTKALLHRPVF 111
Query 123 PDSPTAAKGCLHDCV 137
D A G +HDCV
Sbjct 112 EDG--RAVGTVHDCV 124
>gi|333989073|ref|YP_004521687.1| hypothetical protein JDM601_0432 [Mycobacterium sp. JDM601]
gi|333485040|gb|AEF34432.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=133
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/136 (47%), Positives = 78/136 (58%), Gaps = 14/136 (10%)
Query 3 AKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGG 62
A VD RLA L Y +AYLITVD +R H V V P L DG +V +G +GG
Sbjct 2 ASNVDFNRLAEKLLGYDYAYLITVDAENRPHPVPVMPTL-------DG--KIVRIGALGG 52
Query 63 R-TRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDA 121
R +R NLA SEVT++WPP P GY++IVDG A+ SDAG + A + RA+L A
Sbjct 53 RRSRANLARSSEVTVMWPPPVPGGYTVIVDGTAEVSDAG---ELAAVAISATRAVLIWVA 109
Query 122 APDSPTAAKGCLHDCV 137
P+SP C DCV
Sbjct 110 TPESP-GETPCYSDCV 124
>gi|331694172|ref|YP_004330411.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
[Pseudonocardia dioxanivorans CB1190]
gi|326948861|gb|AEA22558.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
[Pseudonocardia dioxanivorans CB1190]
Length=129
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/141 (40%), Positives = 69/141 (49%), Gaps = 22/141 (15%)
Query 8 LKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTRQN 67
+ RL + Y FAYL+T+ D R H AV P DG V D G RTR N
Sbjct 3 VDRLGETIAGYGFAYLLTIGDDARPHVTAVSPTWS------DGRVRVADPGR---RTRAN 53
Query 68 LAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDA-AP--- 123
+A R +VT++WPP P GYSLIVDG D V RA+LHR A AP
Sbjct 54 VAERPQVTVVWPPPTPDGYSLIVDGTGTL-------DGDLLLVAATRAVLHRPAPAPVAA 106
Query 124 --DSPTAAKGCLHDCVVFSVP 142
D P + C+ DCV ++P
Sbjct 107 DSDEPPSEGACVADCVELTLP 127
>gi|88812941|ref|ZP_01128185.1| hypothetical protein NB231_00335 [Nitrococcus mobilis Nb-231]
gi|88789863|gb|EAR20986.1| hypothetical protein NB231_00335 [Nitrococcus mobilis Nb-231]
Length=131
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/138 (39%), Positives = 71/138 (52%), Gaps = 16/138 (11%)
Query 5 KVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRT 64
+V+L LA + Y FAYL+TV H VA+ P + DG V+ V +G RT
Sbjct 4 EVELSTLADTVARYRFAYLLTVGAAGPPHAVALMPRI-------DG--GVLTVEGLGRRT 54
Query 65 RQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPD 124
R NL ++L+WPP+ YSLIVDG A AS ++AR + P RA+LHR A
Sbjct 55 RDNLRAHPTISLVWPPASLDEYSLIVDGEATAS-----GESAR--ITPTRAVLHRPAPRP 107
Query 125 SPTAAKGCLHDCVVFSVP 142
P C DC+ +P
Sbjct 108 EPVTEGACGSDCIELPLP 125
>gi|258593238|emb|CBE69577.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=160
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/137 (38%), Positives = 71/137 (52%), Gaps = 16/137 (11%)
Query 1 VGAKKVDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLI 60
V + V+L LA + Y FAYL+T H VAV VL+ G D + V I
Sbjct 24 VMSSAVELPSLAHVITRYRFAYLMTTSAKGAPHAVAVAAVLQ----GGD-----LVVNGI 74
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
G R+R+N R V+L+WPP + YSLI+DG+A + DD+ R + P RA+LHR
Sbjct 75 GRRSRENALARPAVSLVWPPQSEADYSLIIDGQAAVT-----DDSLR--ITPTRAVLHRS 127
Query 121 AAPDSPTAAKGCLHDCV 137
+P + C DCV
Sbjct 128 TRSSAPNVSGACESDCV 144
>gi|258593250|emb|CBE69589.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=136
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/132 (38%), Positives = 67/132 (51%), Gaps = 16/132 (12%)
Query 6 VDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTR 65
V+L LA + Y FAYL+T H VAV VL+ G D + V IG R+R
Sbjct 5 VELPSLAHVITRYRFAYLMTTSATGAPHAVAVAAVLQ----GGD-----LVVNGIGRRSR 55
Query 66 QNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAAPDS 125
+N R V L+WPP + YSLI+DG+A + ++ R + P RA+LHR A
Sbjct 56 ENALARPAVGLVWPPQSEADYSLIIDGQAAVT-----GESLR--ITPTRAVLHRSARSSE 108
Query 126 PTAAKGCLHDCV 137
P + C DCV
Sbjct 109 PVVSGACESDCV 120
>gi|334112084|ref|ZP_08486349.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Methylomicrobium
album BG8]
gi|333597768|gb|EGL02599.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Methylomicrobium
album BG8]
Length=127
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/138 (35%), Positives = 68/138 (50%), Gaps = 19/138 (13%)
Query 3 AKKVDLKRLAAALPDYPFA-YLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIG 61
++ + + RL A + + YL+T + R H VAV + G R + G
Sbjct 2 SEMLSIDRLRAESARFGTSPYLLTQGNDGRPHAVAVSIEWQ-------GDRILTRTGT-- 52
Query 62 GRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDA 121
R+ N R ++LLWPP + GYSLIVDG +G D AR V P R +LHR
Sbjct 53 -RSVANADARPLLSLLWPPIEAGGYSLIVDGDGCVIGSGAD---ARISVTPTRGVLHR-- 106
Query 122 APDSP--TAAKGCLHDCV 137
PD+ +AA+GC DC+
Sbjct 107 -PDTSAASAARGCGSDCI 123
>gi|119715206|ref|YP_922171.1| pyridoxamine 5'-phosphate oxidase-like protein [Nocardioides
sp. JS614]
gi|119535867|gb|ABL80484.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
[Nocardioides sp. JS614]
Length=104
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/116 (43%), Positives = 61/116 (53%), Gaps = 17/116 (14%)
Query 6 VDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTR 65
VDL LAA L D+ YL+T DG RV V+V R P DG V+ + GG +
Sbjct 5 VDLADLAATLADFDRGYLLTTTDG-RVKAVSV----RAAP--ADG---VLRIAAPGGGSL 54
Query 66 QNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDA 121
NLA VTLL+ P DP G++L+VDG +A DD V P A+LHR A
Sbjct 55 ANLAANPGVTLLFAPRDPGGHTLLVDGTGRAE----GDDVV---VTPAAAILHRAA 103
>gi|336120774|ref|YP_004575560.1| hypothetical protein MLP_51430 [Microlunatus phosphovorus NM-1]
gi|334688572|dbj|BAK38157.1| hypothetical protein MLP_51430 [Microlunatus phosphovorus NM-1]
Length=126
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/135 (32%), Positives = 65/135 (49%), Gaps = 21/135 (15%)
Query 6 VDLKRLAAALPDYPFAYLITVDDGHRVHTVAVEPVLRELPDGPDGPRAVVDVGLIGGRTR 65
V ++ LA AL +Y YL+T G R + VE V+ G R V + +G +
Sbjct 5 VRIEDLAQALAEYDSGYLLTNRAG-RTKVITVEAVV-------SGNRIVAEG--VGHGST 54
Query 66 QNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRDAA--- 122
NL + TL++PP++ GY+L++DG + + P A+ HR AA
Sbjct 55 ANLVENPQCTLMFPPAERHGYTLLIDGTGTVVE-------GTLTMEPTTAVRHRPAAHAD 107
Query 123 -PDSPTAAKGCLHDC 136
P +P AA C++DC
Sbjct 108 GPPAPGAAADCVNDC 122
>gi|326329043|ref|ZP_08195372.1| hypothetical protein NBCG_00478 [Nocardioidaceae bacterium Broad-1]
gi|325953125|gb|EGD45136.1| hypothetical protein NBCG_00478 [Nocardioidaceae bacterium Broad-1]
Length=123
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/77 (39%), Positives = 37/77 (49%), Gaps = 8/77 (10%)
Query 61 GGRTRQNLAHRSEVTLLWPPSDPSGYSLIVDGRAQASDAGPDDDTARCGVVPIRALLHRD 120
GG TR NLA +TL + P P ++LIVDG D + V P A+LHR
Sbjct 50 GGGTRANLASNPVLTLTYAPLTPREHALIVDGTGLV-------DGSDVVVTPTGAVLHRP 102
Query 121 AAPDS-PTAAKGCLHDC 136
A+ S P GC DC
Sbjct 103 ASHASGPVPEDGCGQDC 119
>gi|289761021|ref|ZP_06520399.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289708527|gb|EFD72543.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=375
Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/26 (74%), Positives = 20/26 (77%), Gaps = 0/26 (0%)
Query 32 VHTVAVEPVLRELPDGPDGPRAVVDV 57
+HTVAVEPVLRELPD PDG R V
Sbjct 1 MHTVAVEPVLRELPDDPDGNRMTFAV 26
Lambda K H
0.319 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129798780480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40