BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0444c
Length=232
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607585|ref|NP_214958.1| hypothetical protein Rv0444c [Mycob... 451 3e-125
gi|289756518|ref|ZP_06515896.1| conserved hypothetical protein [... 449 1e-124
gi|306787445|ref|ZP_07425767.1| hypothetical protein TMDG_02920 ... 449 2e-124
gi|340625469|ref|YP_004743921.1| hypothetical protein MCAN_04421... 448 4e-124
gi|31791622|ref|NP_854115.1| hypothetical protein Mb0452c [Mycob... 446 1e-123
gi|118617081|ref|YP_905413.1| hypothetical protein MUL_1399 [Myc... 308 3e-82
gi|240169826|ref|ZP_04748485.1| hypothetical protein MkanA1_1096... 306 2e-81
gi|296166170|ref|ZP_06848613.1| conserved hypothetical protein [... 269 3e-70
gi|145222407|ref|YP_001133085.1| hypothetical protein Mflv_1817 ... 234 9e-60
gi|315442852|ref|YP_004075731.1| hypothetical protein Mspyr1_121... 234 1e-59
gi|108801336|ref|YP_641533.1| hypothetical protein Mmcs_4372 [My... 232 3e-59
gi|289441823|ref|ZP_06431567.1| conserved hypothetical protein [... 225 4e-57
gi|120405878|ref|YP_955707.1| hypothetical protein Mvan_4928 [My... 213 2e-53
gi|296392462|ref|YP_003657346.1| anti-sigma K factor RskA [Segni... 177 9e-43
gi|111019554|ref|YP_702526.1| hypothetical protein RHA1_ro02563 ... 169 3e-40
gi|226361704|ref|YP_002779482.1| anti-sigma-K factor RskA [Rhodo... 159 2e-37
gi|226305414|ref|YP_002765372.1| anti-sigma-K factor RskA [Rhodo... 145 6e-33
gi|229489654|ref|ZP_04383517.1| anti-sigma-K factor RskA [Rhodoc... 145 6e-33
gi|312140834|ref|YP_004008170.1| membrane protein [Rhodococcus e... 142 3e-32
gi|326384205|ref|ZP_08205887.1| anti-sigma-K factor RskA [Gordon... 142 4e-32
gi|325675529|ref|ZP_08155213.1| hypothetical protein HMPREF0724_... 139 3e-31
gi|262200133|ref|YP_003271341.1| anti-sigma-K factor RskA [Gordo... 135 5e-30
gi|226365660|ref|YP_002783443.1| anti-sigma factor [Rhodococcus ... 132 3e-29
gi|111023154|ref|YP_706126.1| hypothetical protein RHA1_ro06191 ... 132 4e-29
gi|296141262|ref|YP_003648505.1| anti-sigma-K factor RskA [Tsuka... 121 9e-26
gi|343928337|ref|ZP_08767788.1| anti-sigma-K factor RskA [Gordon... 105 7e-21
gi|302857984|ref|XP_002959990.1| hypothetical protein VOLCADRAFT... 94.0 2e-17
gi|119960804|ref|YP_948434.1| hypothetical protein AAur_2719 [Ar... 92.4 5e-17
gi|163840026|ref|YP_001624431.1| hypothetical protein RSal33209_... 87.8 1e-15
gi|284029455|ref|YP_003379386.1| hypothetical protein Kfla_1487 ... 79.7 3e-13
gi|300789323|ref|YP_003769614.1| hypothetical protein AMED_7498 ... 75.9 4e-12
gi|317123266|ref|YP_004097378.1| anti-sigma K factor RskA [Intra... 75.5 6e-12
gi|343927748|ref|ZP_08767216.1| anti-sigma-K factor RskA [Gordon... 72.4 5e-11
gi|119718755|ref|YP_925720.1| hypothetical protein Noca_4536 [No... 70.9 1e-10
gi|319949064|ref|ZP_08023160.1| hypothetical protein ES5_06657 [... 68.6 7e-10
gi|291303345|ref|YP_003514623.1| hypothetical protein Snas_5902 ... 67.8 1e-09
gi|262203589|ref|YP_003274797.1| anti-sigma-K factor RskA [Gordo... 67.8 1e-09
gi|256393133|ref|YP_003114697.1| hypothetical protein Caci_3980 ... 65.9 4e-09
gi|320011765|gb|ADW06615.1| Anti-sigma K factor RskA [Streptomyc... 65.5 6e-09
gi|317509340|ref|ZP_07966960.1| hypothetical protein HMPREF9336_... 65.5 6e-09
gi|116671284|ref|YP_832217.1| hypothetical protein Arth_2738 [Ar... 64.7 9e-09
gi|291450447|ref|ZP_06589837.1| conserved hypothetical protein [... 62.4 5e-08
gi|323359157|ref|YP_004225553.1| hypothetical protein MTES_2709 ... 61.6 8e-08
gi|345010229|ref|YP_004812583.1| Anti-sigma-K factor RskA [Strep... 60.8 2e-07
gi|325963952|ref|YP_004241858.1| hypothetical protein Asphe3_260... 60.5 2e-07
gi|326333193|ref|ZP_08199440.1| anti-sigma-K factor RskA (Regula... 60.5 2e-07
gi|326381957|ref|ZP_08203650.1| hypothetical protein SCNU_03397 ... 59.7 4e-07
gi|239986565|ref|ZP_04707229.1| hypothetical protein SrosN1_0458... 59.3 4e-07
gi|290955646|ref|YP_003486828.1| hypothetical protein SCAB_10881... 58.9 5e-07
gi|148556492|ref|YP_001264074.1| hypothetical protein Swit_3590 ... 58.9 6e-07
>gi|15607585|ref|NP_214958.1| hypothetical protein Rv0444c [Mycobacterium tuberculosis H37Rv]
gi|15839832|ref|NP_334869.1| hypothetical protein MT0460 [Mycobacterium tuberculosis CDC1551]
gi|148660209|ref|YP_001281732.1| hypothetical protein MRA_0449 [Mycobacterium tuberculosis H37Ra]
63 more sequence titles
Length=232
Score = 451 bits (1161), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 232/232 (100%), Positives = 232/232 (100%), Gaps = 0/232 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA
Sbjct 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
Query 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV
Sbjct 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
Query 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP
Sbjct 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG
Sbjct 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
>gi|289756518|ref|ZP_06515896.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294995948|ref|ZP_06801639.1| anti-sigma-K factor rskA [Mycobacterium tuberculosis 210]
gi|289712082|gb|EFD76094.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326902270|gb|EGE49203.1| hypothetical protein TBPG_00110 [Mycobacterium tuberculosis W-148]
gi|339293495|gb|AEJ45606.1| hypothetical protein CCDC5079_0416 [Mycobacterium tuberculosis
CCDC5079]
gi|339297137|gb|AEJ49247.1| hypothetical protein CCDC5180_0410 [Mycobacterium tuberculosis
CCDC5180]
Length=232
Score = 449 bits (1156), Expect = 1e-124, Method: Compositional matrix adjust.
Identities = 231/232 (99%), Positives = 232/232 (100%), Gaps = 0/232 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA
Sbjct 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
Query 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
ATTAEPPAHLRTAILDATKP+VRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV
Sbjct 61 ATTAEPPAHLRTAILDATKPDVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
Query 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP
Sbjct 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG
Sbjct 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
>gi|306787445|ref|ZP_07425767.1| hypothetical protein TMDG_02920 [Mycobacterium tuberculosis SUMu004]
gi|308335910|gb|EFP24761.1| hypothetical protein TMDG_02920 [Mycobacterium tuberculosis SUMu004]
Length=232
Score = 449 bits (1155), Expect = 2e-124, Method: Compositional matrix adjust.
Identities = 231/232 (99%), Positives = 231/232 (99%), Gaps = 0/232 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA
Sbjct 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
Query 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV
Sbjct 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
Query 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
AEQVLTAPDVRTVSRPLGAGTATVV SRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP
Sbjct 121 AEQVLTAPDVRTVSRPLGAGTATVVLSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG
Sbjct 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
>gi|340625469|ref|YP_004743921.1| hypothetical protein MCAN_04421 [Mycobacterium canettii CIPT
140010059]
gi|157382520|gb|ABV48754.1| RskA [Mycobacterium canettii]
gi|340003659|emb|CCC42782.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=232
Score = 448 bits (1152), Expect = 4e-124, Method: Compositional matrix adjust.
Identities = 231/232 (99%), Positives = 231/232 (99%), Gaps = 0/232 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA
Sbjct 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
Query 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
ATTAEPPAHLRTAILDAT PEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV
Sbjct 61 ATTAEPPAHLRTAILDATIPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
Query 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP
Sbjct 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG
Sbjct 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
>gi|31791622|ref|NP_854115.1| hypothetical protein Mb0452c [Mycobacterium bovis AF2122/97]
gi|121636358|ref|YP_976581.1| hypothetical protein BCG_0483c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224988830|ref|YP_002643517.1| hypothetical protein JTY_0453 [Mycobacterium bovis BCG str. Tokyo
172]
6 more sequence titles
Length=232
Score = 446 bits (1147), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 230/232 (99%), Positives = 230/232 (99%), Gaps = 0/232 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA
Sbjct 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
Query 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAF LGVLTRPSPPPTV
Sbjct 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFDLGVLTRPSPPPTV 120
Query 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP
Sbjct 121 AEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
RSA TMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG
Sbjct 181 RSAETMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
>gi|118617081|ref|YP_905413.1| hypothetical protein MUL_1399 [Mycobacterium ulcerans Agy99]
gi|183980789|ref|YP_001849080.1| hypothetical protein MMAR_0765 [Mycobacterium marinum M]
gi|166229669|sp|A0PNM3.1|RSKA_MYCUA RecName: Full=Anti-sigma-K factor rskA; AltName: Full=Regulator
of sigK
gi|118569191|gb|ABL03942.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
gi|183174115|gb|ACC39225.1| conserved membrane protein [Mycobacterium marinum M]
Length=232
Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 182/232 (79%), Positives = 203/232 (88%), Gaps = 2/232 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTE TDF+LLELATPYAL+AVSD+ER DI+RR++AAP+PVAAAF++EVR+VRETM+VVSA
Sbjct 1 MTEPTDFQLLELATPYALHAVSDEERLDIERRLSAAPAPVAAAFDEEVRSVRETMSVVSA 60
Query 61 ATTAEPPAHLRTAILDATKP-EVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPT 119
AT A+PPA LR A+L A +P + RRQ RWRTA FASAAAIAVGLGAFGLGVLTRPS PT
Sbjct 61 ATAAQPPAELRQALLAAAEPAQSRRQPRWRTAVFASAAAIAVGLGAFGLGVLTRPSASPT 120
Query 120 VAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKG 179
VAEQVL APDV+TVS LG GTATV+FSRDRN G+LVMNNV PPS GTVYQMWL+ AKG
Sbjct 121 VAEQVLAAPDVQTVSGRLGGGTATVMFSRDRNAGVLVMNNVPPPSPGTVYQMWLV-DAKG 179
Query 180 PRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
P SAGTMG AVTPST ATLTDLG ST LAFTVEPGTGS +PTGT+LAELPL
Sbjct 180 PTSAGTMGPTAVTPSTKATLTDLGDSTTLAFTVEPGTGSTKPTGTVLAELPL 231
>gi|240169826|ref|ZP_04748485.1| hypothetical protein MkanA1_10962 [Mycobacterium kansasii ATCC
12478]
Length=232
Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 180/232 (78%), Positives = 194/232 (84%), Gaps = 2/232 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTE TDF LLELA PYAL+A+SD+ER DI+R VAAAPS V AAFN+EVRAVRETMA+VSA
Sbjct 1 MTEPTDFGLLELAIPYALHAMSDEERVDIERMVAAAPSAVTAAFNEEVRAVRETMAIVSA 60
Query 61 ATTAEPPAHLRTAILDATKPEV-RRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPT 119
T EPP LRTA+L + P RRQSRWRTA FASAAA+ VGLGAFGLG + RPSPP T
Sbjct 61 TTATEPPERLRTAVLGSVNPATGRRQSRWRTAVFASAAAVVVGLGAFGLGTVLRPSPPTT 120
Query 120 VAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKG 179
VAEQVL APDV+TVSRPLG GTATV+FS DRN G+LVMNNV PPS GTVYQMWLL GA G
Sbjct 121 VAEQVLGAPDVQTVSRPLGNGTATVMFSHDRNAGVLVMNNVPPPSPGTVYQMWLL-GANG 179
Query 180 PRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
P SAGTMG AAV PST ATLT+LG STALAFTVEPGTGS QPTG ILAELPL
Sbjct 180 PTSAGTMGPAAVAPSTKATLTNLGNSTALAFTVEPGTGSTQPTGAILAELPL 231
>gi|296166170|ref|ZP_06848613.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898473|gb|EFG78036.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=232
Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 167/233 (72%), Positives = 185/233 (80%), Gaps = 2/233 (0%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTE +FE+LELATPYAL+AVS +ER++I+RRVAAAP VAAAFNDEVRAVRETMA +SA
Sbjct 1 MTEPNEFEILELATPYALDAVSQEERSEIERRVAAAPRSVAAAFNDEVRAVRETMAAISA 60
Query 61 ATTAEPPAHLRTAILDATKPEVRRQSRWRT-AAFASAAAIAVGLGAFGLGVLTRPSPPPT 119
+T EPPAHLR A L + R WRT A+AAA+ VG AFG+GVL RP P
Sbjct 61 STAVEPPAHLRDATLRTIRSGDGRGYGWRTAVLAAAAAAVVVGAAAFGVGVLMRPHAPSN 120
Query 120 VAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKG 179
+ EQVL APDVRTVS LG GTATVVFSRDRN G+LVMNNV PP GTVYQMWLLG +G
Sbjct 121 IGEQVLAAPDVRTVSGSLGTGTATVVFSRDRNAGVLVMNNVPPPKPGTVYQMWLLGD-QG 179
Query 180 PRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
SAGTM TAAV PSTTATLT+LG+S ALAFTVEPGTGSPQPTGTILAELPLG
Sbjct 180 ATSAGTMNTAAVAPSTTATLTNLGSSKALAFTVEPGTGSPQPTGTILAELPLG 232
>gi|145222407|ref|YP_001133085.1| hypothetical protein Mflv_1817 [Mycobacterium gilvum PYR-GCK]
gi|145214893|gb|ABP44297.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=237
Score = 234 bits (596), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 138/231 (60%), Positives = 167/231 (73%), Gaps = 8/231 (3%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
+LL LATPYAL+AVS E A+IDR++ AAP VA F EVRAVRETMAV+++AT EPP
Sbjct 7 DLLSLATPYALHAVSAAEAAEIDRQLDAAPPGVADEFAAEVRAVRETMAVIASATAVEPP 66
Query 68 AHLRTAIL-DATKPEVR-----RQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTVA 121
AHLR IL T+ +VR R RW AA ++AAA+ +G+GA G+G RP+ PT A
Sbjct 67 AHLRDEILRQITEDKVRTLPSPRPRRWSRAAVSAAAAVFIGVGALGVGYALRPASAPTPA 126
Query 122 EQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
EQ+ APDVRTVS + G GTATVVFSR+RN+G+LVMNNV PP GTVYQMWL+ +GP
Sbjct 127 EQIFAAPDVRTVSGEIPGGGTATVVFSRERNSGVLVMNNVTPPQPGTVYQMWLI-DTEGP 185
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
SAGTM + +V PSTTA + DLG S LAFT+EP GS QPT + AELPL
Sbjct 186 HSAGTMDSESVAPSTTAVIPDLGGSKTLAFTIEPPGGSSQPTSPVFAELPL 236
>gi|315442852|ref|YP_004075731.1| hypothetical protein Mspyr1_12160 [Mycobacterium sp. Spyr1]
gi|315261155|gb|ADT97896.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=242
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/231 (60%), Positives = 167/231 (73%), Gaps = 8/231 (3%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
+LL LATPYAL+AVS E A+IDR++ AAP VA F EVRAVRETMAV+++AT EPP
Sbjct 12 DLLSLATPYALHAVSAAEAAEIDRQLDAAPPGVADEFAAEVRAVRETMAVIASATAVEPP 71
Query 68 AHLRTAIL-DATKPEVR-----RQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTVA 121
AHLR IL T+ +VR R RW AA ++AAA+ +G+GA G+G RP+ PT A
Sbjct 72 AHLRDEILRQITEDKVRTLPSPRPRRWSRAAVSAAAAVFIGVGALGVGYALRPASAPTPA 131
Query 122 EQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGP 180
EQ+ APDVRTVS + G GTATVVFSR+RN+G+LVMNNV PP GTVYQMWL+ +GP
Sbjct 132 EQIFAAPDVRTVSGEIPGGGTATVVFSRERNSGVLVMNNVTPPQPGTVYQMWLI-DTEGP 190
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
SAGTM + +V PSTTA + DLG S LAFT+EP GS QPT + AELPL
Sbjct 191 HSAGTMDSESVAPSTTAVIPDLGGSKTLAFTIEPPGGSSQPTSPVFAELPL 241
>gi|108801336|ref|YP_641533.1| hypothetical protein Mmcs_4372 [Mycobacterium sp. MCS]
gi|119870488|ref|YP_940440.1| hypothetical protein Mkms_4459 [Mycobacterium sp. KMS]
gi|126437318|ref|YP_001073009.1| hypothetical protein Mjls_4753 [Mycobacterium sp. JLS]
6 more sequence titles
Length=243
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/243 (61%), Positives = 176/243 (73%), Gaps = 13/243 (5%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MTE + +LL+LATPYAL+AVS DER +IDR +A AP VA AF DEVR+V+ETMAV+SA
Sbjct 1 MTEPNNTDLLDLATPYALHAVSIDERFEIDRWLATAPPEVADAFTDEVRSVQETMAVLSA 60
Query 61 ATTAEPPAHLRTAIL---------DATKPEVRR--QSRWRTAAFASAAAIAVGLGAFGLG 109
AT EPPAHLR +L D RR +SRWRTA A+AA VGLGA G+G
Sbjct 61 ATATEPPAHLRDNVLAMVADDPVRDLGSARRRRGGESRWRTAVLAAAAVAVVGLGALGVG 120
Query 110 VLTRPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTV 168
+ RP+ PT A+QV APDV+TVS P+ G GTATVVFS++R+ G+LVMN+VAPP GTV
Sbjct 121 LALRPAVSPTTADQVFAAPDVQTVSGPIPGGGTATVVFSKERDAGVLVMNDVAPPKPGTV 180
Query 169 YQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 228
YQMWL+G + GP SAGTM A++PSTTA L+D+G S ALAFTVEP GS +PT AE
Sbjct 181 YQMWLVG-SDGPHSAGTMDDKAISPSTTAVLSDIGTSQALAFTVEPPGGSQRPTSPAFAE 239
Query 229 LPL 231
LPL
Sbjct 240 LPL 242
>gi|289441823|ref|ZP_06431567.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289414742|gb|EFD11982.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=139
Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/124 (96%), Positives = 118/124 (96%), Gaps = 0/124 (0%)
Query 109 GVLTRPSPPPTVAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTV 168
GVLTRPSPPP LTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTV
Sbjct 16 GVLTRPSPPPHRGRASLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTV 75
Query 169 YQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 228
YQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE
Sbjct 76 YQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 135
Query 229 LPLG 232
LPLG
Sbjct 136 LPLG 139
>gi|120405878|ref|YP_955707.1| hypothetical protein Mvan_4928 [Mycobacterium vanbaalenii PYR-1]
gi|166229670|sp|A1TEV1.1|RSKA_MYCVP RecName: Full=Anti-sigma-K factor rskA; AltName: Full=Regulator
of sigK
gi|119958696|gb|ABM15701.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=238
Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/232 (57%), Positives = 158/232 (69%), Gaps = 9/232 (3%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
+LL LATPYAL+A+S E ADIDR + AP VA AF EVRAVRETMA +++AT EPP
Sbjct 7 DLLSLATPYALHALSHAEAADIDRALNDAPPGVADAFLAEVRAVRETMAALASATAVEPP 66
Query 68 AHLRTAILDA-------TKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTV 120
A +R A+L T P R A ++AAA+ +GLG +G RP+P P+
Sbjct 67 ARMRDAVLRQIAEDPVRTLPVRSSSRRRAAAVLSAAAAVVIGLGTLAVGYALRPAPTPST 126
Query 121 AEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKG 179
AEQV APDVRT+S + G GTATVVFSR++N+G+LVMNNV PP GTVYQMWL+ A G
Sbjct 127 AEQVFAAPDVRTISGEIPGGGTATVVFSREQNSGVLVMNNVPPPQPGTVYQMWLV-DADG 185
Query 180 PRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
SAGTM AV PSTTA L DLG+S ALAFTVEP GS +PT + AELPL
Sbjct 186 SHSAGTMDAEAVAPSTTAVLPDLGSSRALAFTVEPPGGSTRPTTPVFAELPL 237
>gi|296392462|ref|YP_003657346.1| anti-sigma K factor RskA [Segniliparus rotundus DSM 44985]
gi|296179609|gb|ADG96515.1| Anti-sigma K factor RskA [Segniliparus rotundus DSM 44985]
Length=236
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/227 (49%), Positives = 147/227 (65%), Gaps = 6/227 (2%)
Query 9 LLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPA 68
LL LA PYAL+AVSD ERA I+R + A A AF +EVR + ETMA V+A T EPP
Sbjct 11 LLGLAAPYALHAVSDTERAAIERALREADPAEAQAFRNEVRRIHETMADVAALTAVEPPE 70
Query 69 HLRTAILDAT---KPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTVAEQVL 125
L+ I+ AT +P+ +++ R AA A+ + + GA G +L R PP+ A ++L
Sbjct 71 RLKARIVAATAQTRPKWFQRTSLRVAAVAATLLVGLAAGA-GWMLLGRSPAPPSAAARIL 129
Query 126 TAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGPRSAG 184
APDVR VS + G GTATVVFS + + +LVMN+VAPP GTVY++WL+ G GP AG
Sbjct 130 AAPDVRAVSGAIPGGGTATVVFSPELHKAVLVMNDVAPPRPGTVYELWLV-GPNGPEPAG 188
Query 185 TMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
TM A++PSTTA + +LG ST + +VEP GS +PTG + AEL L
Sbjct 189 TMDAHAISPSTTAVIDNLGDSTVVGLSVEPPGGSRKPTGAMFAELRL 235
>gi|111019554|ref|YP_702526.1| hypothetical protein RHA1_ro02563 [Rhodococcus jostii RHA1]
gi|110819084|gb|ABG94368.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=245
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/244 (47%), Positives = 143/244 (59%), Gaps = 16/244 (6%)
Query 3 EHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAAT 62
+ + E+L+LA YAL+AV D +R +ID V +AP V F+ VR V ETMA SA+T
Sbjct 2 DESQHEILDLAQVYALDAVDDQQRREIDTAVQSAPPDVRLEFDTAVRDVHETMAAQSAST 61
Query 63 TAEPPAHLRTAILDATK-----------PEVRRQSRWRTAAFASAAAIAVGLGAFGLGV- 110
EPP HL ILDA EVR + R R A SAAA + L G+ V
Sbjct 62 AVEPPVHLLGRILDALPGTAAAPAPIALDEVRARKRRRLVAALSAAAAVIVLAVGGITVA 121
Query 111 --LTRPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGT 167
L P V Q+L A DVRT P+ G G+ATVV+S+D + G+LVMN+V PP+ G+
Sbjct 122 QQLQSEDGQP-VPAQILAADDVRTAVAPIAGGGSATVVYSKDVDAGVLVMNDVPPPAPGS 180
Query 168 VYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILA 227
VYQMWLLG + P SAG M V+PSTTA + D+ ST L F+VEP GS QPTG I A
Sbjct 181 VYQMWLLGPSHEPVSAGIMEADDVSPSTTAVVNDIDQSTELGFSVEPPGGSTQPTGDIFA 240
Query 228 ELPL 231
+ L
Sbjct 241 TVNL 244
>gi|226361704|ref|YP_002779482.1| anti-sigma-K factor RskA [Rhodococcus opacus B4]
gi|226240189|dbj|BAH50537.1| anti-sigma-K factor RskA [Rhodococcus opacus B4]
Length=245
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/243 (44%), Positives = 141/243 (59%), Gaps = 14/243 (5%)
Query 3 EHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAAT 62
+ + ++L+LA YAL+AV D +R +ID + +AP V F++ VR V+ETMA SA+T
Sbjct 2 DESQHDILDLAQVYALDAVDDQQRHEIDTAIESAPPHVRLEFDNAVRGVQETMAAQSAST 61
Query 63 TAEPPAHLRTAILDA-------------TKPEVRRQSRWRTAAFASAAAIAVGLGAFGLG 109
EPP +L ILDA RR+ R A A+AA + + +G +
Sbjct 62 AVEPPDYLLGRILDALPGTAAAPAPVALDDVRARRRRRLVAALSAAAAVVVLAVGGITVA 121
Query 110 VLTRPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTV 168
+ V Q+L A DVRT P+ G G+ATVVFS+D + G+LVMN+V PP G+V
Sbjct 122 QQLQSDETQPVPAQILAADDVRTAVAPIAGGGSATVVFSKDVDAGVLVMNDVPPPEPGSV 181
Query 169 YQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 228
YQMWLLG + P SAG M V PSTTA + D+ STAL F+VEP GS QPTG I A
Sbjct 182 YQMWLLGPSHEPVSAGIMEADDVAPSTTAVVNDIDQSTALGFSVEPPGGSTQPTGDIFAT 241
Query 229 LPL 231
+ L
Sbjct 242 VNL 244
>gi|226305414|ref|YP_002765372.1| anti-sigma-K factor RskA [Rhodococcus erythropolis PR4]
gi|226184529|dbj|BAH32633.1| anti-sigma-K factor RskA [Rhodococcus erythropolis PR4]
Length=245
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/243 (41%), Positives = 140/243 (58%), Gaps = 17/243 (6%)
Query 6 DFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAE 65
D EL++ A YA++A+ DER ++DRR+AA+ S A F+ +VR ETMA ++ E
Sbjct 2 DEELIDYAYAYAIDALDLDERREVDRRLAASDSATRAEFDAQVRLTSETMAAMTVVDAVE 61
Query 66 PPAHLRTAILDATKP------------EVRRQSRWRTAAFASAAAIAVGLGAFGLG-VLT 112
PP LR+++L + E R + R T A A+AAA+A+ +G G+G L+
Sbjct 62 PPPSLRSSVLASIAEQTAAPNAPVSLAERRNRRRPWTMAVAAAAAVAILVGGIGIGRTLS 121
Query 113 RPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQM 171
+PP A +++ APDV +R + G G+AT +FS + +LVMN+V PPS TVYQM
Sbjct 122 DNTPPQNPASEIMAAPDVHATTRDIPGGGSATTLFSPSEDAAVLVMNDVTPPSPDTVYQM 181
Query 172 WLLGGAKGPRS---AGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 228
WL+ G + GTM + V P+T L +G +T LAFTVEP GS QPT A
Sbjct 182 WLVPGDTDDTTMIPMGTMAPSDVKPTTQVVLDGIGPNTKLAFTVEPPGGSQQPTSEPFAT 241
Query 229 LPL 231
+PL
Sbjct 242 IPL 244
>gi|229489654|ref|ZP_04383517.1| anti-sigma-K factor RskA [Rhodococcus erythropolis SK121]
gi|229323751|gb|EEN89509.1| anti-sigma-K factor RskA [Rhodococcus erythropolis SK121]
Length=245
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/243 (42%), Positives = 142/243 (59%), Gaps = 17/243 (6%)
Query 6 DFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAE 65
D EL++ A YA++A+ DER ++D+R+AA+ S A F+ +VR ETMA ++ E
Sbjct 2 DEELIDYAYAYAIDALDLDERREVDKRLAASDSATHAEFDAQVRLTAETMAAMTVVDAVE 61
Query 66 PPAHLRTAIL-----DATKP-------EVRRQSRWRTAAFASAAAIAVGLGAFGLG-VLT 112
PP LR+++L A+ P E R + R T A A+AAA+A+ +G G+G L+
Sbjct 62 PPPSLRSSVLASIAEQASAPNAPVSLAERRNRRRPWTMALAAAAAVAILVGGIGIGRTLS 121
Query 113 RPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQM 171
+PP A +++ APDV +R + G G+AT +FS + +LVMN+V PPS TVYQM
Sbjct 122 DNTPPQNAASEIMAAPDVHATTRDIPGGGSATTLFSPSEDAAVLVMNDVTPPSPDTVYQM 181
Query 172 WLLGGAKGPRSAGTMGTAA---VTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 228
WL+ G + MGT A V P+T L +G +T LAFTVEP GS QPT A
Sbjct 182 WLVPGDTDDTTMIPMGTMAPGDVKPTTQVVLDGIGPNTKLAFTVEPPGGSQQPTSEPFAT 241
Query 229 LPL 231
+PL
Sbjct 242 IPL 244
>gi|312140834|ref|YP_004008170.1| membrane protein [Rhodococcus equi 103S]
gi|311890173|emb|CBH49491.1| putative membrane protein [Rhodococcus equi 103S]
Length=234
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/233 (43%), Positives = 135/233 (58%), Gaps = 8/233 (3%)
Query 6 DFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAE 65
D +L+E A YAL+A+ D++ +D R+A A A F+ VR RETMA S+
Sbjct 2 DDDLIEWAHLYALHALDDEDLRALDARLADADETTRAEFDTAVRLARETMAAASSLVAVT 61
Query 66 PPAHLRTAILDATKPE---VRRQS--RWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPT- 119
PPA LR +L + RR S RW+ + AAA+ + +G +G +PP T
Sbjct 62 PPAALRRDLLRQVSGDDLAKRRNSKRRWQITMASVAAAVVLLVGGVVIGRQLTETPPATP 121
Query 120 VAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAK 178
V Q+L A D+ +V+ + G GTAT ++S++ N +LVMN V PP TVYQMWL+ G +
Sbjct 122 VTAQILAASDMHSVTAEIPGGGTATTMYSKEANAAMLVMNGVTPPKPDTVYQMWLVRGDE 181
Query 179 GPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
P AGTMG V+P+TTA L + +T L FTVEP GS PTGT+ A +PL
Sbjct 182 -PVPAGTMGPDQVSPTTTAVLEGIDGATQLGFTVEPPGGSSYPTGTMFASIPL 233
>gi|326384205|ref|ZP_08205887.1| anti-sigma-K factor RskA [Gordonia neofelifaecis NRRL B-59395]
gi|326197070|gb|EGD54262.1| anti-sigma-K factor RskA [Gordonia neofelifaecis NRRL B-59395]
Length=245
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/245 (45%), Positives = 139/245 (57%), Gaps = 15/245 (6%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
M E D L +LA A +AV + ERA I R V+AA AF E+ A RET+A S
Sbjct 1 MNEFDDDRLRDLAPLIAFDAVDEVERARILREVSAADDAARRAFEAELAAARETLARFSD 60
Query 61 ATTAEPPAHLRTAILDATKPEVR------------RQSRWRTAAFASAAAIAVGLGA-FG 107
AT +PP LR IL A E R R R R+A A+AAA+ +G+G G
Sbjct 61 ATATDPPPPLRGRILAALDEEAREDGAASVRQGARRHPRLRSAVVAAAAAVVLGVGGVIG 120
Query 108 LGVLTR-PSPPPTVAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRG 166
V R +P PT AEQV APDVRT + + G ATV +S G+LVMN+V PP+ G
Sbjct 121 YAVANRSEAPTPTQAEQVFAAPDVRTTTGAVAGGEATVTYSPSAGEGVLVMNDVPPPAPG 180
Query 167 TVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTIL 226
++YQMWL+ G GPR AGTM A V PSTTA +TD+G +TA+AFTV + +
Sbjct 181 SIYQMWLI-GPDGPRLAGTMSDADVAPSTTAVITDMGGATAVAFTVGSAATPDKMVSDPV 239
Query 227 AELPL 231
A+LPL
Sbjct 240 AQLPL 244
>gi|325675529|ref|ZP_08155213.1| hypothetical protein HMPREF0724_12995 [Rhodococcus equi ATCC
33707]
gi|325553500|gb|EGD23178.1| hypothetical protein HMPREF0724_12995 [Rhodococcus equi ATCC
33707]
Length=234
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/233 (42%), Positives = 134/233 (58%), Gaps = 8/233 (3%)
Query 6 DFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAE 65
D +L+E A YAL+A+ D++ +D R+A A A F+ VR RETMA S+
Sbjct 2 DDDLIEWAHLYALHALDDEDLRALDARLADADETTRAEFDTAVRLARETMAAASSLVAVT 61
Query 66 PPAHLRTAILDATKPE---VRRQS--RWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPT- 119
P A LR +L + RR S RW+ + AAA+ + +G +G +PP T
Sbjct 62 PAAALRRDLLRQVSGDDLAKRRNSKRRWQITMASVAAAVVLLVGGVVIGRQLTETPPATP 121
Query 120 VAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAK 178
V Q+L A D+ +V+ + G GTAT ++S++ N +LVMN V PP TVYQMWL+ G +
Sbjct 122 VTAQILAASDMHSVTAEIPGGGTATTMYSKEANAAMLVMNGVTPPKPDTVYQMWLVRGDE 181
Query 179 GPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
P AGTMG V+P+TTA L + +T L FTVEP GS PTGT+ A +PL
Sbjct 182 -PVPAGTMGPDQVSPTTTAVLEGIDGATQLGFTVEPPGGSSYPTGTMFASIPL 233
>gi|262200133|ref|YP_003271341.1| anti-sigma-K factor RskA [Gordonia bronchialis DSM 43247]
gi|262083480|gb|ACY19448.1| Anti-sigma-K factor RskA [Gordonia bronchialis DSM 43247]
Length=266
Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/258 (38%), Positives = 133/258 (52%), Gaps = 30/258 (11%)
Query 3 EHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAAT 62
+ T ELLE A L+A++ E ++++R+A AP + A F +V A RE M VSAAT
Sbjct 9 DDTYAELLEFAPLVGLDALAAAELDELEQRLATAPDDIRAEFRRQVLATREAMTTVSAAT 68
Query 63 TAEPPAHLRTAILDATK-----------------------------PEVRRQSRWRTAAF 93
PPA LR AIL A + P+ RR+ + AA
Sbjct 69 ATPPPAQLRDAILAAARSGDDRQREQPVESPPEPQSDENGAAVTQLPDRRRRIVYLAAAA 128
Query 94 ASAAAIAVGLGAFGLGVLTRPSPPPTVAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTG 153
A+ A G + + SP EQV +APD+++ S + GTATV +S D G
Sbjct 129 VVTVAVGAIGWAIGHSMTSSDSPTTNTPEQVFSAPDLKSTSADVAGGTATVYYSPDVGAG 188
Query 154 LLVMNNVAPPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVE 213
+LVM +V PP GTVYQMWL+ G GPRSAGTM V TTA L + ++ L F+VE
Sbjct 189 VLVMTSVPPPKPGTVYQMWLV-GPDGPRSAGTMTDKDVHEVTTALLPGISSAQTLGFSVE 247
Query 214 PGTGSPQPTGTILAELPL 231
P GS PT ++A++ L
Sbjct 248 PPGGSSTPTSPMVAQIDL 265
>gi|226365660|ref|YP_002783443.1| anti-sigma factor [Rhodococcus opacus B4]
gi|226244150|dbj|BAH54498.1| anti-sigma factor [Rhodococcus opacus B4]
Length=239
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 131/240 (55%), Gaps = 21/240 (8%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
EL+ +A PYAL+A+ D ER ++D +A + F DEVR +RE AVVSA EPP
Sbjct 4 ELVGMAYPYALDALDDSERRELDTDLAGTDEDTRSMFTDEVRRIREAFAVVSAVGAVEPP 63
Query 68 AHLRTAILDATKPEVRRQS--------------RWRTAAFASAAAIAVGLGAFGLGVLTR 113
+R +LD EVRR + RW+ A A+AA + G + LT
Sbjct 64 PRVRIRVLD----EVRRSAPAPTSLAARRSRRRRWQIAVAAAAAVGVLAGGTVIVRQLTE 119
Query 114 PSPPPTVAEQVLTAPDVRTVSRPLGA-GTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMW 172
P PTVAEQVL A D+ + + + A G+AT +S+ ++ + V++ VAPPS TVYQ+W
Sbjct 120 -GPSPTVAEQVLDAADMHSSTSEITAGGSATASYSKSQDAVVFVLDGVAPPSADTVYQLW 178
Query 173 LL-GGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
L+ P AG M + V +T L D+G+ + LA TVEP GSPQPT A L L
Sbjct 179 LMPESGDAPVPAGIMSPSDVLSNTPVVLDDVGSMSKLAVTVEPPGGSPQPTSEPFAVLQL 238
>gi|111023154|ref|YP_706126.1| hypothetical protein RHA1_ro06191 [Rhodococcus jostii RHA1]
gi|110822684|gb|ABG97968.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=239
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/239 (40%), Positives = 129/239 (54%), Gaps = 19/239 (7%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
EL+ +A PYAL+ + D ER ++D +A + F DEVR +RE AVVSA EPP
Sbjct 4 ELVGMAYPYALDVLDDSERRELDIDLAVTDEDTRSTFTDEVRRIREAFAVVSAVGAVEPP 63
Query 68 AHLRTAILDATKPEVRRQSRWRTA----------AFASAAAIAVGLGAFGLGVLTR---P 114
+RT +LD EVR+ + T+ + AA A G V+ R
Sbjct 64 PRVRTRVLD----EVRKSASGPTSLTERRSRRRRWRVAVAAAAAVGVLAGGTVIVRHLTE 119
Query 115 SPPPTVAEQVLTAPDVRTVSRPLGA-GTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWL 173
PTVAEQVL A DV + + + A G+AT +S+ ++ + V++ VAPPS TVYQ+WL
Sbjct 120 GQAPTVAEQVLDASDVHSSTSAIAAGGSATANYSKSQDAVVFVLDGVAPPSADTVYQLWL 179
Query 174 L-GGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
+ P AGT+ V P+TT L D+G+ + LA TVEP GSPQPT A L L
Sbjct 180 MPASGAAPVPAGTLSPGEVQPTTTIVLDDVGSMSNLAVTVEPPGGSPQPTSQPFAVLQL 238
>gi|296141262|ref|YP_003648505.1| anti-sigma-K factor RskA [Tsukamurella paurometabola DSM 20162]
gi|296029396|gb|ADG80166.1| Anti-sigma-K factor RskA [Tsukamurella paurometabola DSM 20162]
Length=253
Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/243 (39%), Positives = 127/243 (53%), Gaps = 22/243 (9%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
ELL+LA YAL A+ DE ++ + + F+D VR VRETMA A T AE P
Sbjct 11 ELLDLAEAYALYALDTDEIRQVEASLETTDADTLRHFDDRVRDVRETMAA-QAQTFAEQP 69
Query 68 AH------------------LRTAILDATKPEVRRQSRWRTAAFASAAAIAVGLG-AFGL 108
A LR A P RR+ + AA A+AVG+ GL
Sbjct 70 APETFDRILGGLVTEPGATPLRAPSAAAGAPRSRRRVQAFAAAAMVIVAVAVGVLVGRGL 129
Query 109 GVLTRPSPPPTVAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTV 168
G + P P + A VL APD RT +G T ++V+SR++N G+++MN+V PP GTV
Sbjct 130 GTDSAPGAPDSNA--VLAAPDARTTQARIGDATISLVYSREKNAGVVLMNDVPPPQDGTV 187
Query 169 YQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 228
YQMWL+ G RS GTM V P+TTAT+ L +T ++E G+ P+G I+A
Sbjct 188 YQMWLMDPGGGARSRGTMTQQDVRPTTTATVAQLDGATTFGISIEAPGGAATPSGRIVAT 247
Query 229 LPL 231
LP+
Sbjct 248 LPI 250
>gi|343928337|ref|ZP_08767788.1| anti-sigma-K factor RskA [Gordonia alkanivorans NBRC 16433]
gi|343761745|dbj|GAA14714.1| anti-sigma-K factor RskA [Gordonia alkanivorans NBRC 16433]
Length=292
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/111 (53%), Positives = 75/111 (68%), Gaps = 1/111 (0%)
Query 122 EQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGPR 181
EQV +A D+R+ S P+ G+ATV ++ +T +LVMN+V PP GTVYQMWL+G G R
Sbjct 183 EQVFSADDLRSTSAPVATGSATVYVAQSTDTAVLVMNSVPPPEPGTVYQMWLVGPG-GTR 241
Query 182 SAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
SAGTM V P TTA L+ + + ALAFTVEP GS QPT + +A+L L
Sbjct 242 SAGTMTDEDVEPVTTAVLSGINTADALAFTVEPPGGSAQPTSSPVAQLSLS 292
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/84 (46%), Positives = 48/84 (58%), Gaps = 3/84 (3%)
Query 1 MTEHTD---FELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAV 57
M++H D ELLELA LNA+S +E +I+ RVA A F +VRA RE MA
Sbjct 1 MSDHLDPEAAELLELAPVVGLNALSSEELREIEARVATADEEFRELFATQVRATREAMAA 60
Query 58 VSAATTAEPPAHLRTAILDATKPE 81
+SAAT PP LR +L A + E
Sbjct 61 ISAATATPPPPSLRDRVLTAARAE 84
>gi|302857984|ref|XP_002959990.1| hypothetical protein VOLCADRAFT_101503 [Volvox carteri f. nagariensis]
gi|300253642|gb|EFJ38945.1| hypothetical protein VOLCADRAFT_101503 [Volvox carteri f. nagariensis]
Length=403
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/252 (36%), Positives = 121/252 (49%), Gaps = 50/252 (19%)
Query 9 LLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPA 68
+LELA YAL+AVSDDERA ID + AP F + VR RET+A VS A EPPA
Sbjct 153 VLELAELYALDAVSDDERAMIDHYIKDAPE--RPEFLERVREARETLA-VSFAPEEEPPA 209
Query 69 HLRTAILD------ATKP--------------------EVRRQSRWRTAA---------- 92
L IL+ A +P +RR+ R R
Sbjct 210 GLFDDILERITKDAAAQPFAQPVAPSVESPAVDDLAAARMRREERTRVGGARRWIVGAAA 269
Query 93 FASAAAIAVGLGAFGLGVLTRPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRN 151
A A +G+GA+ V + P QVL A DV+ S P+ G GTAT+ S ++
Sbjct 270 AAVIALGGIGVGAY---VSAQNDP----VNQVLQAQDVQKKSAPVPGGGTATISASSAKD 322
Query 152 TGLLVMNNVAPPSRGTVYQMWLL-GGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAF 210
+ +++M+ V+P G VYQ+W L P GTM A T S A + L +++++A
Sbjct 323 SFVVLMDGVSPAPEGKVYQLWTLPKDGSAPVPQGTMD--AETLSKPAVVKGLSSASSVAI 380
Query 211 TVEPGTGSPQPT 222
TVEP GS PT
Sbjct 381 TVEPTGGSSAPT 392
>gi|119960804|ref|YP_948434.1| hypothetical protein AAur_2719 [Arthrobacter aurescens TC1]
gi|119947663|gb|ABM06574.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
Length=277
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/259 (35%), Positives = 122/259 (48%), Gaps = 50/259 (19%)
Query 2 TEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAA 61
T+ + +LELA YAL+AVSDDERA ID + AP F V RET+A VS A
Sbjct 20 TDLAEGRVLELAEIYALDAVSDDERAMIDAYIKDAPE--GPEFLQRVHEARETLA-VSFA 76
Query 62 TTAEPPAHLRTAILD-------------ATKPEV-------------RRQSRWRTAA--- 92
PPA L I++ A P+V +R+ R R
Sbjct 77 PEEAPPAGLFDNIMERISNDAASQPPAVAASPDVAGPAVDDLAAARAKREERTRAGGARR 136
Query 93 -------FASAAAIAVGLGAFGLGVLTRPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATV 144
A A +G+GA+ V T+ P QVL A DV+ S P+ G GTAT+
Sbjct 137 WIVGAAAAAVIALGGIGVGAY---VSTQNDP----VNQVLQAQDVQKKSAPVPGGGTATI 189
Query 145 VFSRDRNTGLLVMNNVAPPSRGTVYQMWLL-GGAKGPRSAGTMGTAAVTPSTTATLTDLG 203
S +++ +++M+ VAP G VYQ+W L P GTM A T S A + L
Sbjct 190 SASSAKDSFVVLMDGVAPAPEGKVYQLWTLPKDGSAPVPQGTMD--AETLSKPAVVKGLS 247
Query 204 ASTALAFTVEPGTGSPQPT 222
+++++A TVEP GS PT
Sbjct 248 SASSVAITVEPAGGSSAPT 266
>gi|163840026|ref|YP_001624431.1| hypothetical protein RSal33209_1280 [Renibacterium salmoninarum
ATCC 33209]
gi|162953502|gb|ABY23017.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length=265
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/252 (33%), Positives = 118/252 (47%), Gaps = 37/252 (14%)
Query 9 LLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPA 68
+LEL YA+NAV+++ER I+ + S A FN+ VR RET+A EPPA
Sbjct 18 VLELTELYAINAVAEEERFAIEANLEQLDSSAQAEFNNRVRQARETLASAYGTIEEEPPA 77
Query 69 HL------------------RTAILDATKPEVRRQSR--------WRTAAFAS-AAAIAV 101
L + ++D + RR+ R RT + AAA+
Sbjct 78 GLFDRIQAQIAAAAVPTPAVASPVID--ELAARREQRGAGAKRRPLRTWVLTTAAAAVIA 135
Query 102 GLGAFGLGVLTRPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNV 160
G G+ + + P QV++A DV T+ + G G A V S +N ++ M NV
Sbjct 136 VAGTLGVNGIIQAQDP---VNQVISASDVSTLDVSVQGGGQAKVSISSSKNAAVVRMENV 192
Query 161 APPSRGTVYQMWLL-GGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSP 219
A P+ GT YQ+WL+ A P S G M +++ A + + ALA TVEP GS
Sbjct 193 AAPASGTTYQLWLIPQNAAAPVSLGLM-SSSTALGKPALVDGIDKGQALAITVEPSGGSK 251
Query 220 QPTGT--ILAEL 229
PT T ++A+L
Sbjct 252 TPTTTPVMIAQL 263
>gi|284029455|ref|YP_003379386.1| hypothetical protein Kfla_1487 [Kribbella flavida DSM 17836]
gi|283808748|gb|ADB30587.1| hypothetical protein Kfla_1487 [Kribbella flavida DSM 17836]
Length=249
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/235 (32%), Positives = 102/235 (44%), Gaps = 29/235 (12%)
Query 12 LATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPAHLR 71
L PY L+A+ DDER D + + + AA EV +RE + +S PPA L+
Sbjct 10 LTGPYVLDALPDDERRDFEHHLLSC-----AACTTEVTELREAVVKLSTQVAIPPPARLK 64
Query 72 TAILDATK------PEVRRQS----------RWRTA----AFASAAAIAVGLGAFGLGVL 111
+L + P V R S RW A A+A A G +
Sbjct 65 ALVLASISRARQVPPLVGRHSAVPSGVAAPRRWSKVRSMLALAAAVLAAATSGGIAIDQY 124
Query 112 TRPSPPPTVAEQV---LTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGT 167
S +QV L PDVRTV + G G ATVV SR R+ ++V+ + P G
Sbjct 125 RDKSELARTNDQVAAVLAEPDVRTVHGDVSGGGQATVVASRSRDAAVVVLRGLRPLPPGR 184
Query 168 VYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPT 222
YQ+WL GA+ S G + +A+ TT + A T+EP GS +PT
Sbjct 185 SYQLWLTDGARTAHSVGVVDSASAAGLTTVITGGVAGKVAFGLTIEPDGGSARPT 239
>gi|300789323|ref|YP_003769614.1| hypothetical protein AMED_7498 [Amycolatopsis mediterranei U32]
gi|299798837|gb|ADJ49212.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340530969|gb|AEK46174.1| hypothetical protein RAM_38535 [Amycolatopsis mediterranei S699]
Length=226
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/225 (34%), Positives = 107/225 (48%), Gaps = 22/225 (9%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
EL L YAL+AVSD +RA+ +R + AA +EV +R T A ++ A P
Sbjct 4 ELHMLTGAYALDAVSDVDRAEFERHLGEC-----AACQEEVAELRATGARLAVAAAVATP 58
Query 68 AHL---------RTAILDATKPEVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPP 118
L RT L P VRR SR +T + A + + +P P
Sbjct 59 PELKPVVLAEVARTRQLPPKLPVVRRLSRAKTWQLRISLFGAAAAAVVAVVLGVARTPAP 118
Query 119 TVAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAK 178
+ VL APD + + G G AT+V SR RN +L+ +++ G VYQ+WL+ G++
Sbjct 119 V--DSVLGAPDASAI-QGAGQGHATLVVSRSRNQAVLLASDLPALDAGHVYQVWLI-GSR 174
Query 179 GPRSAGTMGTAAVTPSTTATL-TDLGASTALAFTVEPGTGSPQPT 222
G RSAG M + A A L +D+ + TVEP GS PT
Sbjct 175 GARSAGLMTSEASQRMLVAELPSDV---DRIGITVEPAGGSAGPT 216
>gi|317123266|ref|YP_004097378.1| anti-sigma K factor RskA [Intrasporangium calvum DSM 43043]
gi|315587354|gb|ADU46651.1| Anti-sigma K factor RskA [Intrasporangium calvum DSM 43043]
Length=241
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/239 (33%), Positives = 108/239 (46%), Gaps = 35/239 (14%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
++ L+ YA++A+ + ER ++ +A P A EV +RE A ++A PP
Sbjct 4 DIHALSGAYAVDALDELERVQFEQHLAGCP-----ACRAEVAGLREAAAQLAAGVELPPP 58
Query 68 AHLRTAILDATK-----PEVRRQSR--------------WRTAAFASAAAIAVGLGAFGL 108
LR ++ A P VR + WR A+AAA +G+ G+
Sbjct 59 PALRGRLMSAIAEARPLPPVRAAAPATEAANVAASPARPWRRVLVAAAAAAVLGVTGVGI 118
Query 109 GVLTRPSPPPTVAEQVLTAPD-VRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGT 167
+P PTVAEQVL APD +RT G TATVV S +LV + + G
Sbjct 119 WQAREGTPAPTVAEQVLDAPDAMRTSQSFTGGATATVVRSPSLGRAVLVTSRMPAAPDGK 178
Query 168 VYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLT----DLGASTALAFTVEPGTGSPQPT 222
VYQ+WL S G M +A V P+ + D +TA +VEP GS QPT
Sbjct 179 VYQLWLQD------STGHMVSAGVMPAGPDQVVVLQGDARTATAAGISVEPTGGSQQPT 231
>gi|343927748|ref|ZP_08767216.1| anti-sigma-K factor RskA [Gordonia alkanivorans NBRC 16433]
gi|343762389|dbj|GAA14142.1| anti-sigma-K factor RskA [Gordonia alkanivorans NBRC 16433]
Length=274
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/250 (32%), Positives = 118/250 (48%), Gaps = 37/250 (14%)
Query 16 YALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPAHLRTAIL 75
YA++A++ +E +R +AA V +A+ + + TMA +++ E P+ LR +L
Sbjct 28 YAVSALTPEETLRAERELAALSPDVRSAYEARIVEILTTMAGLASTYALEAPSDLRRRVL 87
Query 76 --------DATKPEV-----------RRQS-RWRTAAFASAAAIAVGLGAFG--LGVLTR 113
+ PE RRQS R + A A+AAA G +G T
Sbjct 88 THVFDGADETNGPEPSTTPQPVPIGGRRQSPRRKAAVLAAAAATVAVALGAGVLIGRTTA 147
Query 114 PSPPP------TVAEQVLT---APDVRTVSRPLG--AGTATVVFSRDRNTGLLVMNNVAP 162
P P P ++VLT A D + PL GT TV+ S + ++ +V
Sbjct 148 PEPSPAAIAVGETQQEVLTVLAAGDATVTAEPLADDHGTITVITSATAGHAVTLIRDVGS 207
Query 163 P-SRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQP 221
P S + +Q+WL+GG++ P AG + P + DLG S LA T+EP GSPQP
Sbjct 208 PLSPDSTFQLWLVGGSENPIPAGLIPGGDTEP---VVVDDLGDSQVLAVTIEPAGGSPQP 264
Query 222 TGTILAELPL 231
T ILA++PL
Sbjct 265 TTPILAQVPL 274
>gi|119718755|ref|YP_925720.1| hypothetical protein Noca_4536 [Nocardioides sp. JS614]
gi|119539416|gb|ABL84033.1| conserved hypothetical protein [Nocardioides sp. JS614]
Length=250
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/253 (32%), Positives = 110/253 (44%), Gaps = 32/253 (12%)
Query 3 EHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAAT 62
E+ +++ L+ YA++A+ D ERA +R +A A EV ++RE + ++ T
Sbjct 4 EYPGYDVHALSGAYAVDALDDVERASFERHLAEC-----AECRSEVASLREAASRLAETT 58
Query 63 TAEPPAHLRTAIL------------------DATKPEVRRQSRWRTAAFASAAAIAVGLG 104
AEPPA LR +L + P RR R AAA AV
Sbjct 59 AAEPPAGLRDRVLAGIATTRPLPPAVSAPAAHRSTPSARRPRR--RLEMLVAAAAAVVAV 116
Query 105 AFGLGVLTRP----SPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNN 159
G + +P S P+V + VL A D R+ S G AT+V S +LV
Sbjct 117 GAGAVIWQQPWEETSQAPSVTDAVLRAADARSTSLDFKGGAHATLVHSDSVGRAVLVTEK 176
Query 160 VAPPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSP 219
+ P G VYQ+WL +G SAG M AA T D +TA TVEP GS
Sbjct 177 MPAPPAGKVYQLWLDQPGRGMVSAGVMPVAA--DQTVLLQGDAATATAAGITVEPEGGSA 234
Query 220 QPTGTILAELPLG 232
+PT +A G
Sbjct 235 EPTSAPIALFDFG 247
>gi|319949064|ref|ZP_08023160.1| hypothetical protein ES5_06657 [Dietzia cinnamea P4]
gi|319437283|gb|EFV92307.1| hypothetical protein ES5_06657 [Dietzia cinnamea P4]
Length=288
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/107 (39%), Positives = 60/107 (57%), Gaps = 2/107 (1%)
Query 124 VLTAPDVRTVSRPLGA-GTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGPRS 182
+L A D+ V +G GTATV+ S+ + ++ M ++ P G YQ+WL+G + P S
Sbjct 180 LLAAEDLAVVRGQVGGTGTATVLASKSADMAVISMTDLPAPPEGRAYQLWLMGDHE-PIS 238
Query 183 AGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAEL 229
AGTM + V PS +A + + S + T EP GSP PTG +L L
Sbjct 239 AGTMESGEVGPSPSAQIEGIRNSEQIGITEEPAGGSPAPTGQVLLAL 285
>gi|291303345|ref|YP_003514623.1| hypothetical protein Snas_5902 [Stackebrandtia nassauensis DSM
44728]
gi|290572565|gb|ADD45530.1| hypothetical protein Snas_5902 [Stackebrandtia nassauensis DSM
44728]
Length=242
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/238 (32%), Positives = 109/238 (46%), Gaps = 30/238 (12%)
Query 16 YALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPAHLRTAIL 75
Y L+AV D ER ++R +A EVR +R T A ++ T PP LR +L
Sbjct 12 YVLDAVDDTERERVERHLAEC-----VECEREVRELRATTARLAETTATAPPLRLRGEVL 66
Query 76 DATK-------PEV--------RRQSRWRTAAFASAAAIAVGLGAFGLGV-LTRPSPPPT 119
+ PE RR RWR+ A A A + V + G+ V + R
Sbjct 67 SRIRRTRQDPPPERSPQSTLRPRRIPRWRSVAAAVAMTVVVAVVGVGVTVTIMRQQVDAE 126
Query 120 VA-----EQVLTAPDVRTVSRP-LGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWL 173
A E VLTAPD ++ G TVV S RN +++++ + P YQ+WL
Sbjct 127 RAQTEQVESVLTAPDAEVSTKESESGGRVTVVSSTSRNEAVVMVSGLRPIDDDHSYQVWL 186
Query 174 LGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
+ A G SAG M A S T ++ + + + T EP GSP+PT ++A++PL
Sbjct 187 VNDA-GQTSAGVM--EAGRRSATMLVSGIAGTDLVGVTEEPAGGSPKPTLPLVADVPL 241
>gi|262203589|ref|YP_003274797.1| anti-sigma-K factor RskA [Gordonia bronchialis DSM 43247]
gi|262086936|gb|ACY22904.1| Anti-sigma-K factor RskA [Gordonia bronchialis DSM 43247]
Length=285
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/120 (39%), Positives = 64/120 (54%), Gaps = 5/120 (4%)
Query 115 SPPPTVAEQVLTAPDVRTVSRPLGA--GTATVVFSRDRNTGLLVMNNVAPP-SRGTVYQM 171
S P VL APD + L G+ +VV SR N + V+ + P ++G +Q+
Sbjct 168 SQPDQQVVDVLAAPDAKVSFAQLSDDRGSISVVTSRSANQAVAVVRDPRNPLAQGQTFQL 227
Query 172 WLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
WL+G A P SAG +GT + + + L AS LA T+EP GSPQPT ILA++ L
Sbjct 228 WLVGKAASPVSAGLVGTQGL--RSPVLVDQLDASQVLAITIEPDGGSPQPTTPILAQIAL 285
>gi|256393133|ref|YP_003114697.1| hypothetical protein Caci_3980 [Catenulispora acidiphila DSM
44928]
gi|256359359|gb|ACU72856.1| conserved hypothetical protein [Catenulispora acidiphila DSM
44928]
Length=246
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/251 (30%), Positives = 117/251 (47%), Gaps = 33/251 (13%)
Query 6 DFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAE 65
D E+ L Y +A+ ERA +R +A A EV ++ET A++++AT
Sbjct 2 DPEVHSLTGAYVCHALEPAERAAFERHLAQC-----ATCAQEVAELQETAALLASATAQT 56
Query 66 PPAHLRTAILDA----------------TKPEVRR-QSRWRTA-AFASAAAIAVGLGAFG 107
PPA L+TA+ DA +P V R + RW TA + A ++A G
Sbjct 57 PPARLKTAV-DARIAVTRQIPPIIVHAPARPAVTRPKRRWFTALGWGLAVSLAAVTAVLG 115
Query 108 LGVLTRPSPPPTVAEQ------VLTAPDVRTVSRPLG-AGTATVVFSRDRNTGLLVMNNV 160
+ + + +Q +L+APDV T + GT TV+ SR + + ++ +
Sbjct 116 VRMDDQQHRIDQAHQQNITITTLLSAPDVHTGRVIVSTGGTGTVLLSRSNDEASITVSGL 175
Query 161 APPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQ 220
A S G YQ+W++ G G RS G + + + S + LG + + TVEP GS Q
Sbjct 176 AKLSPGHTYQLWMM-GPSGTRSGGLLPPGSRS-SDSVLARGLGDAQTIGLTVEPTGGSAQ 233
Query 221 PTGTILAELPL 231
PT T + LP+
Sbjct 234 PTTTPIMLLPM 244
>gi|320011765|gb|ADW06615.1| Anti-sigma K factor RskA [Streptomyces flavogriseus ATCC 33331]
Length=251
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/249 (33%), Positives = 111/249 (45%), Gaps = 38/249 (15%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
EL L YAL+A+ +DER +R + A A EVR + T A + A +A PP
Sbjct 5 ELHTLTGAYALHALPEDERIAFERHLGACE-----ACAQEVRELSATAARLGLAVSATPP 59
Query 68 AHLRTAILDATK-------PEVR---------RQSRWRT---AAFASAAAIAVGLGAFGL 108
LR +L P R R RW T AA +AAA G+ +
Sbjct 60 PALRDRVLREITTVRQEPPPHGRSPRAGAVTGRAGRWSTYALAACVAAAAAFGGVAVWQN 119
Query 109 GVLTRPSPPPTVAEQ-------VLTAPDVRTVSRPLGAGT-ATVVFSRDRNTGLLVMNNV 160
V A+Q VLTA D RT + LG G TVV S+ N + + +++
Sbjct 120 QVAQDARQETDRAQQHNEQVARVLTASDARTTTADLGGGARGTVVVSKSVNRAVFLASDM 179
Query 161 APPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTD--LGASTALAFTVEPGTGS 218
A P G VYQ+W A RSAG M +A + A L D + ++ + TVEP GS
Sbjct 180 AQPPGGKVYQLW-FNDAGAMRSAGLMNPSA---TDDAVLLDGPVDRASGMGITVEPAGGS 235
Query 219 PQPTGTILA 227
+PT + +A
Sbjct 236 DEPTSSPVA 244
>gi|317509340|ref|ZP_07966960.1| hypothetical protein HMPREF9336_03332 [Segniliparus rugosus ATCC
BAA-974]
gi|316252396|gb|EFV11846.1| hypothetical protein HMPREF9336_03332 [Segniliparus rugosus ATCC
BAA-974]
Length=235
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/231 (28%), Positives = 106/231 (46%), Gaps = 11/231 (4%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
+L +L YAL+A+ DE A + +A A ++ A RE + ++ +PP
Sbjct 9 DLADLVELYALDALPQDEHAAFESALAEAGREEQDWAVAQIAATREALNRLAEPFALQPP 68
Query 68 AHLRTAILDATKPEVRRQSRWRTAAFASAAAIAVG-LGAFGLGVLTRP---SPPPTVAEQ 123
A R A+L +P + RW A +A + + G + G P A
Sbjct 69 ARARDALLAEVRPTAWPR-RWAAIAAIAACLVLLAVFGVWRFGPFREQIADQSIPRDASM 127
Query 124 VLTAPDVR-TVSRPLGA-GTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGPR 181
V+TAPD T+ + +G G + +SR+ N ++++ VYQ+WL+
Sbjct 128 VMTAPDAHMTMGKIVGQEGMVAITYSRNMNKAVILLPPTTRIPDNKVYQVWLVRPDSSMT 187
Query 182 SAGTMGTA-AVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPL 231
SAG + A P A L G +T + ++EP +G P+PTG +++E+ L
Sbjct 188 SAGMIAPGEAGRPMVVAAL---GQATGVMLSLEPSSGMPKPTGAMVSEVEL 235
>gi|116671284|ref|YP_832217.1| hypothetical protein Arth_2738 [Arthrobacter sp. FB24]
gi|116611393|gb|ABK04117.1| conserved hypothetical protein [Arthrobacter sp. FB24]
Length=294
Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/134 (39%), Positives = 68/134 (51%), Gaps = 11/134 (8%)
Query 101 VGLGAFGLGVLTRPSPPPTVAEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNN 159
VG+GA+ V + P QVL A DVR + + G GTATV S ++ ++ MN
Sbjct 169 VGVGAY---VANQNDP----LNQVLQAQDVREATVDVSGGGTATVAISTSKDAVVVKMNG 221
Query 160 VAPPSRGTVYQMWLL-GGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGS 218
V P G VYQMWL+ P S G M A+ S A + + ++ AL TVEP GS
Sbjct 222 VPAPPAGKVYQMWLIPKDGSAPVSQGLMDAEAL--SKPAVVKGIHSAAALGITVEPVGGS 279
Query 219 PQPTGTILAELPLG 232
PT +A PLG
Sbjct 280 ASPTLPTVAAAPLG 293
>gi|291450447|ref|ZP_06589837.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353396|gb|EFE80298.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=251
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/249 (31%), Positives = 105/249 (43%), Gaps = 47/249 (18%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
EL L YAL+A+S++ER DR +A P A EV + T A + A A PP
Sbjct 5 ELHTLTGAYALHALSEEERDAFDRHLADCP-----ACTTEVAELTATAARLGLAEAAVPP 59
Query 68 AHLRTAILDATKPEVRRQSRW--------------RTAAFASAAAIAVGLGAFGLGVLTR 113
++ +L EVR++ R FA AA +A G G+ V
Sbjct 60 PAMKDQVLRRIG-EVRQEPPRTAAATTTPRAGRARRFTGFALAACLAAVAGLGGVAVWQH 118
Query 114 PSPPPTVAE------------QVLTAPDVRTVSRPLGAGT-ATVVFSRDRNTGLLVMNNV 160
+VL APD R+ S LG GT ATVV S + +L+ ++
Sbjct 119 QEAEQARQRAEAAERQAASVARVLAAPDARSESARLGEGTRATVVVSASLDEAVLLAADM 178
Query 161 APPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTD-------LGASTALAFTVE 213
P G VYQ+W G GTM +A + P + + +G ++ + TVE
Sbjct 179 PAPPEGKVYQLWFDDG-------GTMRSAGLMPPSRGDGVEAVRLEGGVGEASGVGITVE 231
Query 214 PGTGSPQPT 222
P GS QPT
Sbjct 232 PPGGSEQPT 240
>gi|323359157|ref|YP_004225553.1| hypothetical protein MTES_2709 [Microbacterium testaceum StLB037]
gi|323275528|dbj|BAJ75673.1| hypothetical protein MTES_2709 [Microbacterium testaceum StLB037]
Length=262
Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/256 (30%), Positives = 116/256 (46%), Gaps = 51/256 (19%)
Query 8 ELLELATPYALNAVSD-DERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATT-AE 65
+ +LA +ALNA+SD DERA + A A +P ++ VR E +A +S +
Sbjct 5 DFADLAAGHALNALSDADERA---YQEALASNP---HWDSHVRDASEAIAALSDIVEPVD 58
Query 66 PPAHLRTAIL---------------------------------DAT--KPEVRRQSRWRT 90
PPA +R ++L DAT +P + RW T
Sbjct 59 PPASVRASLLERIADLPQQTDVPPALDEDKEDFAAAGPAPVEPDATPARPASWGRRRWFT 118
Query 91 AAFASAAAIAVGLGAFGLG-VLTRPSPPPTVA-EQVLTAPDVR--TVSRPLGAGTATVVF 146
A + A + +G GA +G +TRP+ VA EQ+ APD + +V+ P G G+AT +
Sbjct 119 LAASIVAVLVLGFGAASIGQYVTRPAS--VVALEQIENAPDAQSASVTMPDG-GSATAHW 175
Query 147 SRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGAST 206
S +LV + + S Y++W + G + P +AG T A +T + +
Sbjct 176 SASTGQSVLVTDGMPALSDDQTYELWFVRG-ETPIAAGIFETDAEGRATAILDGEFHSGD 234
Query 207 ALAFTVEPGTGSPQPT 222
+A T+EP GSP T
Sbjct 235 TIAVTIEPAGGSPDGT 250
>gi|345010229|ref|YP_004812583.1| Anti-sigma-K factor RskA [Streptomyces violaceusniger Tu 4113]
gi|344036578|gb|AEM82303.1| Anti-sigma-K factor RskA [Streptomyces violaceusniger Tu 4113]
Length=258
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/253 (32%), Positives = 111/253 (44%), Gaps = 43/253 (16%)
Query 5 TDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTA 64
T +L L YA++A+S E A+ +R +A V A EVR +RET A ++ AT
Sbjct 2 TRADLHTLTGAYAVHALSGRELAEFERHLA-----VCDACRQEVRELRETAAKLAVATAL 56
Query 65 EPPAHL------RTAILDATKPEV------------RRQSRWRTAAFASAAAIAVGL--- 103
PP + R A + P V RR++ R FA AA +A +
Sbjct 57 TPPPTMKDDVMRRIATVRQEPPRVAAREARESHAGPRRRTGRRALNFALAACVAAAVAFG 116
Query 104 ---------GAFGLGVLTRPSPPPTVAE---QVLTAPDVRTVS-RPLGAGTATVVFSRDR 150
+ R T A+ QVL APD R+ S R T TVV SR
Sbjct 117 GAAVWQYRQASDARDTARRSEQRVTQAQEVTQVLAAPDARSRSGRMTDGSTGTVVVSRGL 176
Query 151 NTGLLVMNNVAPPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTD-LGASTALA 209
N + + + + P G +YQ+WL G R AG M ++ S A L+ +G ++A+
Sbjct 177 NRAVFLASGLPEPPAGRIYQLWLSDGGT-MRPAGLMDSSGA--SVAAVLSGAVGKASAMG 233
Query 210 FTVEPGTGSPQPT 222
TVEP GS PT
Sbjct 234 VTVEPAGGSKAPT 246
>gi|325963952|ref|YP_004241858.1| hypothetical protein Asphe3_26000 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470039|gb|ADX73724.1| hypothetical protein Asphe3_26000 [Arthrobacter phenanthrenivorans
Sphe3]
Length=289
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/112 (39%), Positives = 59/112 (53%), Gaps = 4/112 (3%)
Query 123 QVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLL-GGAKGP 180
QV+ A D+R S + G GTAT++ S + ++ M+ V P G VYQMWL+ P
Sbjct 179 QVVRAGDLRQASVDVAGGGTATLLISPSEDAAVVKMSGVPAPPAGKVYQMWLIPKDGSAP 238
Query 181 RSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQPTGTILAELPLG 232
S G M A+ S A + + ++ AL TVEP GS PT +A PLG
Sbjct 239 VSQGLMDEEAL--SKPAVVEGISSAAALGITVEPAGGSESPTLPTVAAAPLG 288
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (58%), Gaps = 1/75 (1%)
Query 10 LELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPAH 69
++LA YAL+AV++ ER I+ ++AAP+ AF + VR RET+A A EPPA
Sbjct 26 VDLAELYALDAVTEGERRAIEEYISAAPAAERTAFFERVRQARETLARTFRAEE-EPPAD 84
Query 70 LRTAILDATKPEVRR 84
L I+ + RR
Sbjct 85 LFERIVAQLPDQGRR 99
>gi|326333193|ref|ZP_08199440.1| anti-sigma-K factor RskA (Regulator of sigK) [Nocardioidaceae
bacterium Broad-1]
gi|325948837|gb|EGD40930.1| anti-sigma-K factor RskA (Regulator of sigK) [Nocardioidaceae
bacterium Broad-1]
Length=249
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/257 (31%), Positives = 112/257 (44%), Gaps = 46/257 (17%)
Query 1 MTEHTDFELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSA 60
MT H ++ L+ YA++A+ D ERA + +A V A DEV ++R++ + +
Sbjct 1 MTAH---DIHALSGAYAVDALDDIERARFEEHLA-----VCADCRDEVASLRDSAWTLGS 52
Query 61 ATTAEPPAHLRTAILDATKPEVR-----------------------RQSRWRTAAFASAA 97
T PP LR +L K E+R R+ WRT A A+A
Sbjct 53 LTDTAPPPELRDRLLAGIK-EIRPLPPETPAIHEDAAVPAEASSGGRRFGWRTFAAAAAV 111
Query 98 AIAVGLGAFGLGVLTRPSPPPTV--AEQVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGL 154
VG G LTR T+ AE+VL+A D TV+ L G A VV S N +
Sbjct 112 LAVVGTGTVAAVELTRDDSSQTMTTAERVLSAKDATTVAVDLPGKARARVVRSVSENRAV 171
Query 155 LVMNNVAPPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPS----TTATLTDLGASTALAF 210
LV + + G VY++WL + M A + P+ T D ++A
Sbjct 172 LVTSGMPAAPTGKVYELWL-------QHDEVMVPAGLMPAGSDQTFVLEGDAADASAAGI 224
Query 211 TVEPGTGSPQPTGTILA 227
TVEP GS +PT +A
Sbjct 225 TVEPEGGSDEPTSAPIA 241
>gi|326381957|ref|ZP_08203650.1| hypothetical protein SCNU_03397 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199383|gb|EGD56564.1| hypothetical protein SCNU_03397 [Gordonia neofelifaecis NRRL
B-59395]
Length=234
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/183 (29%), Positives = 89/183 (49%), Gaps = 20/183 (10%)
Query 62 TTAEP-PAHLRTAILDATKPEV------RRQSRWRTAAFASAAAIAVGLGAFGL---GVL 111
T+AEP P +R ++DA E RR +RW AA AA A G A+ +
Sbjct 58 TSAEPVPDSVRARLMDAVDRESGDQRGPRRWTRWAAAACIVMAAGAGGAVAWHVVTGHAQ 117
Query 112 TRPSPPPTVAEQVLTAPDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQM 171
T VL APD++ + LGAG ++S + ++ + ++ P + YQ+
Sbjct 118 TVEQSADGAMRDVLAAPDMQKSTGTLGAGNVAAMYSPSQRATVVTVEDLPPTEQAMGYQV 177
Query 172 WLLGGAKGPRSAGTMGTAAVTPS---TTATLTDLGASTALAFTVEPGTGSPQPTGTILAE 228
W+ G M +A V P+ ++ +TD+G ++ +VEP +GSP+PT ++ +
Sbjct 178 WI-------SVDGRMKSAGVVPADDRSSVVMTDMGRPAGVSLSVEPMSGSPEPTSPMVVQ 230
Query 229 LPL 231
+P+
Sbjct 231 VPM 233
>gi|239986565|ref|ZP_04707229.1| hypothetical protein SrosN1_04585 [Streptomyces roseosporus NRRL
11379]
gi|291443505|ref|ZP_06582895.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346452|gb|EFE73356.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length=250
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/103 (40%), Positives = 55/103 (54%), Gaps = 7/103 (6%)
Query 123 QVLTAPDVRTVSRPL-GAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGPR 181
QVL+APD +T S L G TVV S+ +N + + + +APP G VYQ+W R
Sbjct 140 QVLSAPDAKTSSGELTGGARGTVVVSQSQNRAVFLASGMAPPPSGKVYQIW-FNDEGTMR 198
Query 182 SAGTMGTAAVTPSTTATLTD--LGASTALAFTVEPGTGSPQPT 222
SAG M A S A L D + ++ + TVEP GS +PT
Sbjct 199 SAGLMDPKA---SDDAVLLDGPVDQASGMGITVEPAGGSAEPT 238
>gi|290955646|ref|YP_003486828.1| hypothetical protein SCAB_10881 [Streptomyces scabiei 87.22]
gi|260645172|emb|CBG68258.1| putative membrane protein [Streptomyces scabiei 87.22]
Length=250
Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/251 (30%), Positives = 102/251 (41%), Gaps = 34/251 (13%)
Query 8 ELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPP 67
EL L YAL+A+SD+E +R +A P A E + T A + A + P
Sbjct 5 ELHRLTGAYALHALSDEEHEAFERHLADC-QPCA----QETAELCATAARLGLAVSTTSP 59
Query 68 AHLRTAIL-------------------DATKPEVRRQSRWRTAAFASAAAIAVGLGAFGL 108
+R +L +P R SRW AA +AAA G +
Sbjct 60 PVMRERVLRRIATVRQEAPGGSTPSRSGGARPRTRLLSRWALAACLAAAAALGGTTVWQY 119
Query 109 GVLTRPSPPPTVAEQ-------VLTAPDVRTVSRPLGAG-TATVVFSRDRNTGLLVMNNV 160
AE+ VL APD R+ S L AG + TVV SR+ + + V + +
Sbjct 120 QRAEEAVDQARRAERGADEIAAVLAAPDARSRSSELTAGASGTVVVSRNLDRAVFVASGL 179
Query 161 APPSRGTVYQMWLLGGAKGPRSAGTMGTAAVTPSTTATLTDLGASTALAFTVEPGTGSPQ 220
A PS VYQ+W RSAG M T L ++ + T+EP GS Q
Sbjct 180 ARPSADKVYQLWFDDDGT-MRSAGLM-DPRRRDQTVLMRGALDGASGMGVTLEPAGGSKQ 237
Query 221 PTGTILAELPL 231
PT LA +P
Sbjct 238 PTSAPLAVMPF 248
>gi|148556492|ref|YP_001264074.1| hypothetical protein Swit_3590 [Sphingomonas wittichii RW1]
gi|148501682|gb|ABQ69936.1| Uncharacterized protein [Sphingomonas wittichii RW1]
Length=233
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/221 (33%), Positives = 96/221 (44%), Gaps = 12/221 (5%)
Query 12 LATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPAHLR 71
LA Y L + D ER RR+ P+ VAA + R +AV A PPA L
Sbjct 8 LAGEYVLGTLDDTERRAFQRRLLTDPAAVAAVATWQERLSPLLLAVPEEA----PPAGLW 63
Query 72 TAILDATKP--EVRRQSRWRTAAFASAAAIAVGLGAFGLGVLTRPSPPPTVAEQVLTA-- 127
T I + P + R RW+ A A+A V G + +P P VA+Q +
Sbjct 64 TRIGADSGPANDNGRLRRWQVATVAAALVALVSTGVALRPRIEPAAPAPQVAQQAPSPLF 123
Query 128 PDVRTVSRPLGAGTATVVFSRDRNTGLLVMNNVAPPSRGTVYQMWLLGGAKGPRSAGTMG 187
V +S GA V + RDR ++ NVA P G ++W++ G PRS G M
Sbjct 124 QSVAALSEQGGAPALLVTYDRDRKEMRVMPVNVA-PRPGHSLELWVIAGKAAPRSIGLMR 182
Query 188 TAAVTPSTTATLTDLGASTALAFTVEPGTGSPQ--PTGTIL 226
T L DL +A +VEP GSP PTG ++
Sbjct 183 EDGATALDRMAL-DLQQEMTIAVSVEPKGGSPTGLPTGPVV 222
Lambda K H
0.314 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 306895531426
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40