BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0445c

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607586|ref|NP_214959.1|  RNA polymerase sigma factor SigK [M...   381    3e-104
gi|340625470|ref|YP_004743922.1|  putative alternative RNA polyme...   379    1e-103
gi|289441824|ref|ZP_06431568.1|  RNA polymerase sigma factor SigK...   359    1e-97 
gi|240169827|ref|ZP_04748486.1|  RNA polymerase sigma factor SigK...   308    2e-82 
gi|118617082|ref|YP_905414.1|  RNA polymerase sigma factor SigK [...   304    4e-81 
gi|296166169|ref|ZP_06848612.1|  RNA polymerase sigma factor SigK...   284    4e-75 
gi|120405877|ref|YP_955706.1|  RNA polymerase sigma factor SigK [...   253    7e-66 
gi|126437317|ref|YP_001073008.1|  RNA polymerase sigma factor Sig...   249    2e-64 
gi|108801335|ref|YP_641532.1|  RNA polymerase sigma factor SigK [...   246    1e-63 
gi|315442853|ref|YP_004075732.1|  RNA polymerase sigma factor, si...   234    5e-60 
gi|145222408|ref|YP_001133086.1|  RNA polymerase sigma factor Sig...   234    5e-60 
gi|296392461|ref|YP_003657345.1|  ECF subfamily RNA polymerase si...   219    2e-55 
gi|226305415|ref|YP_002765373.1|  RNA polymerase ECF-type sigma f...   218    4e-55 
gi|229489442|ref|ZP_04383305.1|  RNA polymerase sigma factor SigK...   217    7e-55 
gi|325675530|ref|ZP_08155214.1|  RNA polymerase sigma factor SigK...   201    6e-50 
gi|312140833|ref|YP_004008169.1|  sigma-70 factor [Rhodococcus eq...   200    8e-50 
gi|226361703|ref|YP_002779481.1|  RNA polymerase sigma factor Sig...   198    3e-49 
gi|111019553|ref|YP_702525.1|  RNA polymerase sigma factor SigK [...   198    3e-49 
gi|262200134|ref|YP_003271342.1|  sigma-70 family RNA polymerase ...   198    4e-49 
gi|119961673|ref|YP_948433.1|  RNA polymerase sigma (70) factor [...   192    2e-47 
gi|111023155|ref|YP_706127.1|  RNA polymerase sigma factor SigK [...   192    3e-47 
gi|325963951|ref|YP_004241857.1|  RNA polymerase sigma factor, si...   191    4e-47 
gi|220913206|ref|YP_002488515.1|  ECF subfamily RNA polymerase si...   190    1e-46 
gi|54022856|ref|YP_117098.1|  RNA polymerase sigma factor SigK [N...   189    1e-46 
gi|226365661|ref|YP_002783444.1|  RNA polymerase sigma factor Sig...   187    6e-46 
gi|262203950|ref|YP_003275158.1|  sigma-70 family RNA polymerase ...   186    1e-45 
gi|116671283|ref|YP_832216.1|  ECF subfamily RNA polymerase sigma...   184    4e-45 
gi|163840027|ref|YP_001624432.1|  RNA polymerase sigma factor [Re...   184    4e-45 
gi|262203588|ref|YP_003274796.1|  sigma-70 family RNA polymerase ...   183    1e-44 
gi|326384206|ref|ZP_08205888.1|  RNA polymerase sigma factor SigK...   182    2e-44 
gi|343927306|ref|ZP_08766782.1|  RNA polymerase ECF-type sigma fa...   179    1e-43 
gi|290961588|ref|YP_003492770.1|  sigma factor [Streptomyces scab...   179    2e-43 
gi|297564275|ref|YP_003683248.1|  RNA polymerase, sigma-24 subuni...   178    4e-43 
gi|302561480|ref|ZP_07313822.1|  RNA polymerase sigma-70 factor, ...   177    6e-43 
gi|317509339|ref|ZP_07966959.1|  sigma-70 family RNA polymerase s...   176    1e-42 
gi|343927747|ref|ZP_08767215.1|  RNA polymerase ECF-type sigma fa...   174    5e-42 
gi|317123267|ref|YP_004097379.1|  RNA polymerase, sigma subunit, ...   173    9e-42 
gi|296141261|ref|YP_003648504.1|  ECF subfamily RNA polymerase si...   172    1e-41 
gi|284031700|ref|YP_003381631.1|  ECF subfamily RNA polymerase si...   172    1e-41 
gi|297198607|ref|ZP_06916004.1|  RNA polymerase sigma factor SigK...   172    2e-41 
gi|29833124|ref|NP_827758.1|  RNA polymerase sigma factor SigK [S...   171    4e-41 
gi|300789324|ref|YP_003769615.1|  RNA polymerase sigma-70 factor,...   171    5e-41 
gi|340530970|gb|AEK46175.1|  RNA polymerase sigma-70 factor, ECF ...   171    5e-41 
gi|302857984|ref|XP_002959990.1|  hypothetical protein VOLCADRAFT...   171    6e-41 
gi|291303344|ref|YP_003514622.1|  ECF subfamily RNA polymerase si...   170    9e-41 
gi|88855776|ref|ZP_01130439.1|  RNA polymerase sigma factor [mari...   170    1e-40 
gi|308176807|ref|YP_003916213.1|  RNA polymerase sigma factor [Ar...   169    2e-40 
gi|291440567|ref|ZP_06579957.1|  RNA polymerase sigma factor SigK...   168    3e-40 
gi|170781002|ref|YP_001709334.1|  RNA polymerase sigma factor Sig...   168    4e-40 
gi|326333192|ref|ZP_08199439.1|  RNA polymerase sigma-70 factor, ...   168    4e-40 


>gi|15607586|ref|NP_214959.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
H37Rv]
 gi|15839833|ref|NP_334870.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
CDC1551]
 gi|31791623|ref|NP_854116.1| RNA polymerase sigma factor SigK [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 
gi|121636359|ref|YP_976582.1| RNA polymerase sigma factor SigK [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148660210|ref|YP_001281733.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
H37Ra]
 gi|148821641|ref|YP_001286395.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
F11]
 gi|167970737|ref|ZP_02553014.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
H37Ra]
 gi|224988831|ref|YP_002643518.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797369|ref|YP_003030370.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
KZN 1435]
 gi|254230793|ref|ZP_04924120.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
C]
 gi|254363409|ref|ZP_04979455.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
str. Haarlem]
 gi|254549392|ref|ZP_05139839.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289445985|ref|ZP_06435729.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
CPHL_A]
 gi|289552694|ref|ZP_06441904.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
KZN 605]
 gi|289568361|ref|ZP_06448588.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
T17]
 gi|289573030|ref|ZP_06453257.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
K85]
 gi|289744141|ref|ZP_06503519.1| SigK [Mycobacterium tuberculosis 02_1987]
 gi|289748929|ref|ZP_06508307.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
T92]
 gi|289752475|ref|ZP_06511853.1| SigK [Mycobacterium tuberculosis EAS054]
 gi|289756519|ref|ZP_06515897.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
T85]
 gi|289760561|ref|ZP_06519939.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
GM 1503]
 gi|294995949|ref|ZP_06801640.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
210]
 gi|297632929|ref|ZP_06950709.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
KZN 4207]
 gi|297729904|ref|ZP_06959022.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
KZN R506]
 gi|298523922|ref|ZP_07011331.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
94_M4241A]
 gi|306774541|ref|ZP_07412878.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu001]
 gi|306779290|ref|ZP_07417627.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu002]
 gi|306783079|ref|ZP_07421401.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu003]
 gi|306787446|ref|ZP_07425768.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu004]
 gi|306791998|ref|ZP_07430300.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu005]
 gi|306796185|ref|ZP_07434487.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu006]
 gi|306802042|ref|ZP_07438710.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu008]
 gi|306806254|ref|ZP_07442922.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu007]
 gi|306966450|ref|ZP_07479111.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu009]
 gi|306970645|ref|ZP_07483306.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu010]
 gi|307078370|ref|ZP_07487540.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu011]
 gi|307082929|ref|ZP_07492042.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu012]
 gi|313657233|ref|ZP_07814113.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630513|ref|YP_004722155.1| alternative RNA polymerase sigma factor SIGK [Mycobacterium africanum 
GM041182]
 gi|81573541|sp|Q7U1Z6.1|SIGK_MYCBO RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|81669523|sp|O53730.1|SIGK_MYCTU RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|166219484|sp|A1KFR7.1|SIGK_MYCBP RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|166219487|sp|A5TZH1.1|SIGK_MYCTA RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|2909520|emb|CAA17402.1| PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGK [Mycobacterium 
tuberculosis H37Rv]
 gi|13879966|gb|AAK44684.1| RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium 
tuberculosis CDC1551]
 gi|31617209|emb|CAD93316.1| PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGK [Mycobacterium 
bovis AF2122/97]
 gi|121492006|emb|CAL70469.1| Probable alternative rna polymerase sigma factor sigK [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|124599852|gb|EAY58862.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
C]
 gi|134148923|gb|EBA40968.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
str. Haarlem]
 gi|148504362|gb|ABQ72171.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis H37Ra]
 gi|148720168|gb|ABR04793.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
F11]
 gi|224771944|dbj|BAH24750.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253318872|gb|ACT23475.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
KZN 1435]
 gi|289418943|gb|EFD16144.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
CPHL_A]
 gi|289437326|gb|EFD19819.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
KZN 605]
 gi|289537461|gb|EFD42039.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
K85]
 gi|289542114|gb|EFD45763.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
T17]
 gi|289684669|gb|EFD52157.1| SigK [Mycobacterium tuberculosis 02_1987]
 gi|289689516|gb|EFD56945.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
T92]
 gi|289693062|gb|EFD60491.1| SigK [Mycobacterium tuberculosis EAS054]
 gi|289708067|gb|EFD72083.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
GM 1503]
 gi|289712083|gb|EFD76095.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
T85]
 gi|298493716|gb|EFI29010.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
94_M4241A]
 gi|308216890|gb|EFO76289.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu001]
 gi|308327734|gb|EFP16585.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu002]
 gi|308332096|gb|EFP20947.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu003]
 gi|308335911|gb|EFP24762.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu004]
 gi|308339488|gb|EFP28339.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu005]
 gi|308343353|gb|EFP32204.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu006]
 gi|308347263|gb|EFP36114.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu007]
 gi|308351193|gb|EFP40044.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu008]
 gi|308355846|gb|EFP44697.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu009]
 gi|308359766|gb|EFP48617.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu010]
 gi|308363707|gb|EFP52558.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu011]
 gi|308367360|gb|EFP56211.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
SUMu012]
 gi|323721117|gb|EGB30179.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
CDC1551A]
 gi|326902271|gb|EGE49204.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
W-148]
 gi|328457155|gb|AEB02578.1| alternative RNA polymerase sigma factor sigK [Mycobacterium tuberculosis 
KZN 4207]
 gi|339293496|gb|AEJ45607.1| SigK [Mycobacterium tuberculosis CCDC5079]
 gi|339297138|gb|AEJ49248.1| SigK [Mycobacterium tuberculosis CCDC5180]
 gi|339329869|emb|CCC25519.1| putative alternative RNA polymerase sigma factor SIGK [Mycobacterium 
africanum GM041182]
 gi|341600375|emb|CCC63045.1| probable alternative rna polymerase sigma factor sigK [Mycobacterium 
bovis BCG str. Moreau RDJ]
 gi|344218261|gb|AEM98891.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
CTRI-2]
Length=187

 Score =  381 bits (978),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)

Query  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60
            MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL
Sbjct  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60

Query  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120
            EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL
Sbjct  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120

Query  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180
            AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL
Sbjct  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180

Query  181  RNCLDVS  187
            RNCLDVS
Sbjct  181  RNCLDVS  187


>gi|340625470|ref|YP_004743922.1| putative alternative RNA polymerase sigma factor SIGK [Mycobacterium 
canettii CIPT 140010059]
 gi|157382519|gb|ABV48753.1| SigK [Mycobacterium canettii]
 gi|340003660|emb|CCC42783.1| putative alternative RNA polymerase sigma factor SIGK [Mycobacterium 
canettii CIPT 140010059]
Length=187

 Score =  379 bits (972),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 186/187 (99%), Positives = 186/187 (99%), Gaps = 0/187 (0%)

Query  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60
            MTGPPRLSSDLD LLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL
Sbjct  1    MTGPPRLSSDLDVLLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60

Query  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120
            EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL
Sbjct  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120

Query  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180
            AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL
Sbjct  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180

Query  181  RNCLDVS  187
            RNCLDVS
Sbjct  181  RNCLDVS  187


>gi|289441824|ref|ZP_06431568.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
T46]
 gi|289414743|gb|EFD11983.1| RNA polymerase sigma factor SigK [Mycobacterium tuberculosis 
T46]
Length=176

 Score =  359 bits (922),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60
            MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL
Sbjct  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60

Query  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120
            EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL
Sbjct  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120

Query  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDA  176
            AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDA
Sbjct  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDA  176


>gi|240169827|ref|ZP_04748486.1| RNA polymerase sigma factor SigK [Mycobacterium kansasii ATCC 
12478]
Length=187

 Score =  308 bits (789),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 150/187 (81%), Positives = 160/187 (86%), Gaps = 0/187 (0%)

Query  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60
            MTGPPRLSSDL ALL ++A  D  AFA FYD TKSRVYGLV RVLRD GYSEETTQEIYL
Sbjct  1    MTGPPRLSSDLSALLHQIARGDSDAFATFYDQTKSRVYGLVARVLRDPGYSEETTQEIYL  60

Query  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120
            EVWR ASE+D+ KGS LAWLLTMAHRRA+DRVR EQAG+QRE RYG AN+DPASDVVAD 
Sbjct  61   EVWRTASEYDAVKGSPLAWLLTMAHRRAIDRVRAEQAGSQRESRYGVANIDPASDVVADS  120

Query  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180
            AIAGDERRRV  CL  LTD QR+CIE+AYYGGLTY EVS RLA NLSTIKSRMRDALR L
Sbjct  121  AIAGDERRRVAACLGGLTDAQRECIEMAYYGGLTYAEVSHRLATNLSTIKSRMRDALRGL  180

Query  181  RNCLDVS  187
            RNCL +S
Sbjct  181  RNCLGMS  187


>gi|118617082|ref|YP_905414.1| RNA polymerase sigma factor SigK [Mycobacterium ulcerans Agy99]
 gi|183980790|ref|YP_001849081.1| alternative RNA polymerase sigma factor SigK [Mycobacterium marinum 
M]
 gi|166219488|sp|A0PNM4.1|SIGK_MYCUA RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|118569192|gb|ABL03943.1| alternative RNA polymerase sigma factor SigK [Mycobacterium ulcerans 
Agy99]
 gi|183174116|gb|ACC39226.1| alternative RNA polymerase sigma factor SigK [Mycobacterium marinum 
M]
Length=187

 Score =  304 bits (779),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 152/187 (82%), Positives = 163/187 (88%), Gaps = 0/187 (0%)

Query  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60
            MTGPP  S DL+ALLR++A  ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL
Sbjct  1    MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL  60

Query  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120
            EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD 
Sbjct  61   EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS  120

Query  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180
            AIAGDERRRV ECL  LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L
Sbjct  121  AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL  180

Query  181  RNCLDVS  187
            RNCLD S
Sbjct  181  RNCLDAS  187


>gi|296166169|ref|ZP_06848612.1| RNA polymerase sigma factor SigK [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898472|gb|EFG78035.1| RNA polymerase sigma factor SigK [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=187

 Score =  284 bits (727),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 141/186 (76%), Positives = 158/186 (85%), Gaps = 0/186 (0%)

Query  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60
            MTGPP    +LDALL +VA  D AAFA  YD TKSRVYG+VMRVLRD+GYSEETTQEIY 
Sbjct  1    MTGPPPSGHELDALLHKVARGDSAAFAAVYDLTKSRVYGMVMRVLRDSGYSEETTQEIYC  60

Query  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120
            EVWR A ++D +KGSALAWLLT+AHRRAVDRVR E+A  +RE RY A + DPASDVVAD 
Sbjct  61   EVWRTARDYDPSKGSALAWLLTIAHRRAVDRVRSEEAFGRRESRYAATSADPASDVVADA  120

Query  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180
            AIAGDERRRV ECL ALTDTQR+CI+LAYY GL+Y +VS RLAANLSTIKSRMRDALR+L
Sbjct  121  AIAGDERRRVVECLGALTDTQRECIQLAYYDGLSYSQVSERLAANLSTIKSRMRDALRAL  180

Query  181  RNCLDV  186
            RNCL+V
Sbjct  181  RNCLEV  186


>gi|120405877|ref|YP_955706.1| RNA polymerase sigma factor SigK [Mycobacterium vanbaalenii PYR-1]
 gi|166219489|sp|A1TEV0.1|SIGK_MYCVP RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|119958695|gb|ABM15700.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
vanbaalenii PYR-1]
Length=196

 Score =  253 bits (647),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 122/183 (67%), Positives = 150/183 (82%), Gaps = 0/183 (0%)

Query  5    PRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWR  64
            P ++++LDALLR+VA  D  AFA FYD T++RVYGL+ RVLRD GYSEETTQ++YL+VWR
Sbjct  14   PLVTAELDALLRQVAQRDAEAFAAFYDQTRARVYGLITRVLRDPGYSEETTQDVYLQVWR  73

Query  65   NASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAG  124
            NA+ +D + GSAL+WLLT+AHRRAVDRVR EQA + RE RYGA +VDP SD VAD  +  
Sbjct  74   NAAGYDPSVGSALSWLLTLAHRRAVDRVRSEQAASTRESRYGAISVDPPSDHVADDVLLD  133

Query  125  DERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            DERRRV  CL +LTD QR+CI+LAYY GLTY +V+ RLAANL+TIKSRMRD +R+LR CL
Sbjct  134  DERRRVAGCLDSLTDVQRECIQLAYYDGLTYAQVADRLAANLATIKSRMRDGIRALRKCL  193

Query  185  DVS  187
             V+
Sbjct  194  GVA  196


>gi|126437317|ref|YP_001073008.1| RNA polymerase sigma factor SigK [Mycobacterium sp. JLS]
 gi|166219485|sp|A3Q5U0.1|SIGK_MYCSJ RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|126237117|gb|ABO00518.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
sp. JLS]
Length=193

 Score =  249 bits (635),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 120/183 (66%), Positives = 147/183 (81%), Gaps = 0/183 (0%)

Query  5    PRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWR  64
            P +++DLD LLR+VA  D  AFA  YD T+SRVYG+V RVLRD GYSEETTQ+IYL+VWR
Sbjct  11   PFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWR  70

Query  65   NASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAG  124
            +A  +D   GS +AWLLT+AHRRAVDRVR E+A +QRE RYGAA+VDP  D VAD  I  
Sbjct  71   SAGSYDPKAGSPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILL  130

Query  125  DERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            DERRRV +C+ +L+D QR+ I+LAYY GLTYV+VS RL+ANL+TIKSRMRD +R L+NCL
Sbjct  131  DERRRVVDCMGSLSDLQREAIQLAYYEGLTYVQVSERLSANLATIKSRMRDGIRGLKNCL  190

Query  185  DVS  187
             +S
Sbjct  191  GMS  193


>gi|108801335|ref|YP_641532.1| RNA polymerase sigma factor SigK [Mycobacterium sp. MCS]
 gi|119870487|ref|YP_940439.1| RNA polymerase sigma factor SigK [Mycobacterium sp. KMS]
 gi|123368753|sp|Q1B3Q8.1|SIGK_MYCSS RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|166219486|sp|A1ULE1.1|SIGK_MYCSK RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K 
factor
 gi|108771754|gb|ABG10476.1| RNA polymerase, sigma-24 subunit, RpoE [Mycobacterium sp. MCS]
 gi|119696576|gb|ABL93649.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
sp. KMS]
Length=193

 Score =  246 bits (628),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 119/183 (66%), Positives = 146/183 (80%), Gaps = 0/183 (0%)

Query  5    PRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWR  64
            P +++DLD LLR+VA  D  AFA  YD T+SRVYG+V RVLRD GYSEETTQ+IYL+VWR
Sbjct  11   PFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWR  70

Query  65   NASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAG  124
            +A  +D   GS +AWLLT+AHRRAVDRVR E+A +QRE RYGAA+VDP  D VAD  I  
Sbjct  71   SAGSYDPKAGSPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILL  130

Query  125  DERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            DERRRV +C+ +L+D QR+ I+LAYY GLTYV+VS RL+ANL+TIKSRMR  +R L+NCL
Sbjct  131  DERRRVVDCMGSLSDLQREAIQLAYYEGLTYVQVSERLSANLATIKSRMRGGIRGLKNCL  190

Query  185  DVS  187
             +S
Sbjct  191  GMS  193


>gi|315442853|ref|YP_004075732.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
 gi|315261156|gb|ADT97897.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
Length=194

 Score =  234 bits (597),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 118/181 (66%), Positives = 148/181 (82%), Gaps = 0/181 (0%)

Query  7    LSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNA  66
            ++++LDALLR+VA  D  AFA FYD T+SRV+GLV RVLRD GYSEETTQ++YL+VWR A
Sbjct  14   VTAELDALLRQVARRDADAFAAFYDQTRSRVFGLVTRVLRDPGYSEETTQDVYLQVWRTA  73

Query  67   SEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDE  126
              +D + GS LAWLLT+AHRRAVDRVR E+A + R+ RYGAA ++  +D V+D AI  DE
Sbjct  74   HNYDPSAGSPLAWLLTLAHRRAVDRVRSEEAASSRDSRYGAATIETPTDHVSDAAILSDE  133

Query  127  RRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            R+RVT+CL ALTDTQR+CI+LAYY GLTY +VS RLA NL+TIKSRMRDA+R L+ C+ V
Sbjct  134  RQRVTDCLGALTDTQRECIQLAYYDGLTYAQVSERLATNLATIKSRMRDAIRGLKRCMGV  193

Query  187  S  187
            +
Sbjct  194  T  194


>gi|145222408|ref|YP_001133086.1| RNA polymerase sigma factor SigK [Mycobacterium gilvum PYR-GCK]
 gi|145214894|gb|ABP44298.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
gilvum PYR-GCK]
Length=188

 Score =  234 bits (596),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 118/181 (66%), Positives = 148/181 (82%), Gaps = 0/181 (0%)

Query  7    LSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNA  66
            ++++LDALLR+VA  D  AFA FYD T+SRV+GLV RVLRD GYSEETTQ++YL+VWR A
Sbjct  8    VTAELDALLRQVARRDADAFAAFYDQTRSRVFGLVTRVLRDPGYSEETTQDVYLQVWRTA  67

Query  67   SEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDE  126
              +D + GS LAWLLT+AHRRAVDRVR E+A + R+ RYGAA ++  +D V+D AI  DE
Sbjct  68   HNYDPSAGSPLAWLLTLAHRRAVDRVRSEEAASSRDSRYGAATIETPTDHVSDAAILSDE  127

Query  127  RRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            R+RVT+CL ALTDTQR+CI+LAYY GLTY +VS RLA NL+TIKSRMRDA+R L+ C+ V
Sbjct  128  RQRVTDCLGALTDTQRECIQLAYYDGLTYAQVSERLATNLATIKSRMRDAIRGLKRCMGV  187

Query  187  S  187
            +
Sbjct  188  T  188


>gi|296392461|ref|YP_003657345.1| ECF subfamily RNA polymerase sigma-24 factor [Segniliparus rotundus 
DSM 44985]
 gi|296179608|gb|ADG96514.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Segniliparus 
rotundus DSM 44985]
Length=215

 Score =  219 bits (557),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 107/178 (61%), Positives = 136/178 (77%), Gaps = 0/178 (0%)

Query  7    LSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNA  66
            +S++LD LL RVA  D  AFA FYD TK+RV+GLV+RVLRD GYSEET QE+YL+VWR+A
Sbjct  27   VSAELDRLLARVADGDADAFASFYDQTKARVFGLVLRVLRDQGYSEETVQEVYLQVWRSA  86

Query  67   SEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDE  126
            S F    GSAL+W+LT+AHRRAVDRVR E +  +R+++YG+A   PA D V D A+  DE
Sbjct  87   SAFHPEAGSALSWVLTLAHRRAVDRVRAEHSAARRDLQYGSAMSSPAFDEVVDTALRRDE  146

Query  127  RRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            +R+V  CL  L++ QR+C+ELAYY GLTY +V+  LA +LST+KSRMRD L  LR CL
Sbjct  147  QRQVVRCLSVLSEAQRRCLELAYYDGLTYQQVAEGLATSLSTVKSRMRDGLARLRGCL  204


>gi|226305415|ref|YP_002765373.1| RNA polymerase ECF-type sigma factor SigK [Rhodococcus erythropolis 
PR4]
 gi|226184530|dbj|BAH32634.1| RNA polymerase ECF-type sigma factor SigK [Rhodococcus erythropolis 
PR4]
Length=222

 Score =  218 bits (554),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 107/179 (60%), Positives = 129/179 (73%), Gaps = 0/179 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S +L  +L  VAG DQ+AFAEFYD T SRVYG+V+RVLRD G+SEE  QE+YL+ W++A 
Sbjct  43   SRELAVILANVAGGDQSAFAEFYDRTSSRVYGMVLRVLRDPGFSEEAVQEVYLQAWKSAD  102

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             FD AKGSAL+WLLT+AHRRAVDRVR EQ+ + R+  Y   N  P  DVV+D     DE 
Sbjct  103  SFDPAKGSALSWLLTLAHRRAVDRVRSEQSSSDRQALYDTTNATPEFDVVSDEVTRRDEH  162

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            R VT+CL+ LTDTQRQ + LAYYGG TY EV+  L   + TIKSR+RD L  LR CL V
Sbjct  163  RAVTDCLETLTDTQRQSVTLAYYGGRTYREVAEDLGVAIPTIKSRIRDGLLRLRGCLGV  221


>gi|229489442|ref|ZP_04383305.1| RNA polymerase sigma factor SigK [Rhodococcus erythropolis SK121]
 gi|229323539|gb|EEN89297.1| RNA polymerase sigma factor SigK [Rhodococcus erythropolis SK121]
Length=208

 Score =  217 bits (552),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 107/179 (60%), Positives = 129/179 (73%), Gaps = 0/179 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S +L  +L  VAG DQ+AFAEFYD T SRVYG+V+RVLRD G+SEE  QE+YL+ W++A 
Sbjct  29   SRELAVILADVAGGDQSAFAEFYDRTSSRVYGMVLRVLRDPGFSEEAVQEVYLQAWKSAD  88

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             FD AKGSAL+WLLT+AHRRAVDRVR EQ+ + R+  Y   N  P  DVV+D     DE 
Sbjct  89   SFDPAKGSALSWLLTLAHRRAVDRVRSEQSSSDRQALYDTTNATPEFDVVSDEVTRRDEH  148

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            R VT+CL+ LTDTQRQ + LAYYGG TY EV+  L   + TIKSR+RD L  LR CL V
Sbjct  149  RAVTDCLETLTDTQRQSVTLAYYGGRTYREVAEDLGVAIPTIKSRIRDGLLRLRGCLGV  207


>gi|325675530|ref|ZP_08155214.1| RNA polymerase sigma factor SigK [Rhodococcus equi ATCC 33707]
 gi|325553501|gb|EGD23179.1| RNA polymerase sigma factor SigK [Rhodococcus equi ATCC 33707]
Length=190

 Score =  201 bits (510),  Expect = 6e-50, Method: Compositional matrix adjust.
 Identities = 99/179 (56%), Positives = 125/179 (70%), Gaps = 0/179 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S +L  LL R+A  D+AAFA FYD T  RVYGLV+RVLRD G+SEETTQEIYL+VW++A+
Sbjct  11   SDELRILLTRIASGDEAAFASFYDRTGPRVYGLVLRVLRDPGFSEETTQEIYLQVWKSAA  70

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             FD  +GS L+WL+T+AHRRAVDRVR EQ+   RE+ Y  AN     D V +      ER
Sbjct  71   TFDPGRGSPLSWLMTLAHRRAVDRVRSEQSHTDREIVYETANRTDEFDEVTEEVTRRAER  130

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            + V +C++ LTD QRQ + LAYYGG TY EV+  L   + T+K+R+RD L  LR CL V
Sbjct  131  QAVVDCMQTLTDIQRQSVTLAYYGGRTYREVASELGVAVPTVKTRIRDGLARLRGCLGV  189


>gi|312140833|ref|YP_004008169.1| sigma-70 factor [Rhodococcus equi 103S]
 gi|311890172|emb|CBH49490.1| putative sigma-70 factor [Rhodococcus equi 103S]
Length=221

 Score =  200 bits (509),  Expect = 8e-50, Method: Compositional matrix adjust.
 Identities = 99/179 (56%), Positives = 125/179 (70%), Gaps = 0/179 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S +L  LL R+A  D+AAFA FYD T  RVYGLV+RVLRD G+SEETTQEIYL+VW++A+
Sbjct  42   SDELRILLTRIASGDEAAFASFYDRTGPRVYGLVLRVLRDPGFSEETTQEIYLQVWKSAA  101

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             FD  +GS L+WL+T+AHRRAVDRVR EQ+   RE+ Y  AN     D V +      ER
Sbjct  102  TFDPGRGSPLSWLMTLAHRRAVDRVRSEQSHTDREIVYETANRTDEFDEVTEEVTRRAER  161

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            + V +C++ LTD QRQ + LAYYGG TY EV+  L   + T+K+R+RD L  LR CL V
Sbjct  162  QAVVDCMQTLTDIQRQSVTLAYYGGRTYREVASELGVAVPTVKTRIRDGLARLRGCLGV  220


>gi|226361703|ref|YP_002779481.1| RNA polymerase sigma factor SigK [Rhodococcus opacus B4]
 gi|226240188|dbj|BAH50536.1| RNA polymerase ECF-type sigma factor SigK [Rhodococcus opacus 
B4]
Length=192

 Score =  198 bits (504),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 99/188 (53%), Positives = 136/188 (73%), Gaps = 2/188 (1%)

Query  1    MTGPPRLSSD--LDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEI  58
            MTG  R + +  L ALL R++  ++ AF++FY+ T +RVYG+V+RVLRD GYSEETTQE+
Sbjct  1    MTGVDRDTENVTLTALLARISRGERDAFSDFYERTSARVYGMVLRVLRDPGYSEETTQEV  60

Query  59   YLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVA  118
            YL+VW NA++FD  +GS L+WL+T+AHRRAVDRVR EQ+G++RE  YGA++     D V+
Sbjct  61   YLQVWSNAAKFDPKQGSPLSWLITLAHRRAVDRVRSEQSGSEREAAYGASSWYGPFDAVS  120

Query  119  DLAIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALR  178
            +      +   V +CL  LT+ Q++ + LAYYGGLTY EVS RL+  L T+KSR+RD L 
Sbjct  121  EEVTRRGDTSDVVDCLGTLTEVQQRTVVLAYYGGLTYREVSERLSVGLPTVKSRIRDGLI  180

Query  179  SLRNCLDV  186
             L+ CL V
Sbjct  181  RLKQCLGV  188


>gi|111019553|ref|YP_702525.1| RNA polymerase sigma factor SigK [Rhodococcus jostii RHA1]
 gi|110819083|gb|ABG94367.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii 
RHA1]
Length=192

 Score =  198 bits (504),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 100/188 (54%), Positives = 134/188 (72%), Gaps = 2/188 (1%)

Query  1    MTGPPRLSSD--LDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEI  58
            MTG  R + +  L ALL R+A  ++ AF++FY+ T +RVYG+V+RVLRD GYSEETTQE+
Sbjct  1    MTGVDRDTENVTLTALLARIAQGERDAFSDFYERTSARVYGMVLRVLRDPGYSEETTQEV  60

Query  59   YLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVA  118
            YL+VW NA +FD  +GS L+WL+T+AHRRAVDRVR EQ+G +RE  YGA++     D V+
Sbjct  61   YLQVWNNADKFDPKQGSPLSWLITLAHRRAVDRVRSEQSGTEREAAYGASSWYGPFDAVS  120

Query  119  DLAIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALR  178
            +      +   V +CL  LT+ Q++ + LAYYGGLTY EVS RL+  L T+KSR+RD L 
Sbjct  121  EEVTRRGDTSDVVDCLGTLTEVQQRTVVLAYYGGLTYREVSERLSVALPTVKSRIRDGLI  180

Query  179  SLRNCLDV  186
             L+ CL V
Sbjct  181  RLKQCLGV  188


>gi|262200134|ref|YP_003271342.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis 
DSM 43247]
 gi|262083481|gb|ACY19449.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis 
DSM 43247]
Length=225

 Score =  198 bits (503),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 98/180 (55%), Positives = 127/180 (71%), Gaps = 4/180 (2%)

Query  5    PRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWR  64
            PRL+     LL R+A  D  AFAEFYD T +RVYG+V+RVLRD GYSEETTQE++L+VWR
Sbjct  45   PRLAE----LLSRIADGDDGAFAEFYDATAARVYGMVLRVLRDPGYSEETTQEVFLQVWR  100

Query  65   NASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAG  124
            +A  + +  GS L+WL+TMAHRRAVDRVR E A ++R++RY A   +   D+V+D   + 
Sbjct  101  SAGSYSADAGSPLSWLITMAHRRAVDRVRSESASSRRDIRYAAQAQESPFDLVSDAVGSS  160

Query  125  DERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            +    V  CL +LTD QRQ + LAYY GLTY EV+ RL+  L T+KSR+RD +  LR CL
Sbjct  161  ETAETVVGCLGSLTDVQRQSVVLAYYEGLTYREVAERLSVALPTVKSRIRDGMIRLRRCL  220


>gi|119961673|ref|YP_948433.1| RNA polymerase sigma (70) factor [Arthrobacter aurescens TC1]
 gi|119948532|gb|ABM07443.1| putative RNA polymerase sigma (70) factor [Arthrobacter aurescens 
TC1]
Length=238

 Score =  192 bits (487),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 101/193 (53%), Positives = 127/193 (66%), Gaps = 9/193 (4%)

Query  3    GPP---------RLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEE  53
            GPP          L+S L  LL  VA  DQ AFAEFY  T  RV+G+  RVL D   SE+
Sbjct  45   GPPVFEATGSATDLNSQLAGLLELVAAGDQQAFAEFYGLTSRRVFGMARRVLIDPDLSED  104

Query  54   TTQEIYLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPA  113
             TQE+Y++VW+ A++FD + GS LAWL+T+AHRRA+DRVR  QA   RE +YGAA+ D  
Sbjct  105  ATQEVYIQVWQGAAKFDRSAGSPLAWLMTIAHRRAIDRVRAVQAATDREAKYGAASQDLD  164

Query  114  SDVVADLAIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRM  173
             D+VA+ A +  E   V+ CL  LTDTQR+ + LAYYGGLTY EV+  L A + TIKSR+
Sbjct  165  RDLVAEEADSNLEAEAVSRCLGTLTDTQRESVRLAYYGGLTYREVAEHLGAAVPTIKSRI  224

Query  174  RDALRSLRNCLDV  186
            RD L  L+ CL V
Sbjct  225  RDGLLRLKTCLGV  237


>gi|111023155|ref|YP_706127.1| RNA polymerase sigma factor SigK [Rhodococcus jostii RHA1]
 gi|110822685|gb|ABG97969.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii 
RHA1]
Length=227

 Score =  192 bits (487),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 95/177 (54%), Positives = 122/177 (69%), Gaps = 0/177 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S++L   + RVA  D  AFAE YD T +RV+G+V+RVLRD GY+EETTQE++L+ WR AS
Sbjct  48   STELHDTMARVANGDADAFAELYDRTSARVHGMVLRVLRDPGYAEETTQEVFLQAWRTAS  107

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             FD A+GS L+WL+T+AHRRAVDRVR EQAG  RE  Y   N+    D V +      E 
Sbjct  108  NFDPARGSVLSWLMTLAHRRAVDRVRSEQAGTDREALYETTNIAGPFDHVTEEVTRRLEH  167

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            + V  CL +LTDTQR+ + +AYY G TY EV+ +L   LST+K+R+RD L  LR CL
Sbjct  168  QSVLACLDSLTDTQRESVAMAYYDGRTYREVASQLGVALSTVKTRIRDGLTRLRGCL  224


>gi|325963951|ref|YP_004241857.1| RNA polymerase sigma factor, sigma-70 family [Arthrobacter phenanthrenivorans 
Sphe3]
 gi|323470038|gb|ADX73723.1| RNA polymerase sigma factor, sigma-70 family [Arthrobacter phenanthrenivorans 
Sphe3]
Length=239

 Score =  191 bits (486),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 98/184 (54%), Positives = 124/184 (68%), Gaps = 0/184 (0%)

Query  4    PPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVW  63
            P  LS  L  LL  +   DQAAFAEFY  T  RV+G+  RVL D   SE+TTQE++L+VW
Sbjct  56   PSDLSHRLAVLLEGIGRGDQAAFAEFYQLTSRRVFGMARRVLIDAELSEDTTQEVFLQVW  115

Query  64   RNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIA  123
            +NA++FD   GS L+WL+T+AHRRAVDRVR  Q+   RE +YGA+  D   D VAD   +
Sbjct  116  QNAAKFDPKAGSPLSWLMTIAHRRAVDRVRSSQSSTDREAKYGASTQDIDHDTVADEVGS  175

Query  124  GDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNC  183
              E   V  CL+ LT+TQ++ + LAYYGGLTY EV+ RL A + TIKSR+RD L  L+ C
Sbjct  176  RLEAEAVVRCLETLTETQQESVRLAYYGGLTYREVAERLNAAVPTIKSRIRDGLIRLKTC  235

Query  184  LDVS  187
            L VS
Sbjct  236  LGVS  239


>gi|220913206|ref|YP_002488515.1| ECF subfamily RNA polymerase sigma-24 subunit [Arthrobacter chlorophenolicus 
A6]
 gi|219860084|gb|ACL40426.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Arthrobacter 
chlorophenolicus A6]
Length=202

 Score =  190 bits (482),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 96/185 (52%), Positives = 128/185 (70%), Gaps = 0/185 (0%)

Query  3    GPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEV  62
             P   S  L  LL  +A  DQA+FAEFY  T  RV+G+  RVL D   SE+TTQE++L+V
Sbjct  18   SPADSSHQLAVLLEGIARGDQASFAEFYRLTSRRVFGMARRVLIDPELSEDTTQEVFLQV  77

Query  63   WRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAI  122
            W+NA++FDS+ GS L+WL+T++HRRAVDRVR  Q+ + RE +YGA++ D   D V+D   
Sbjct  78   WQNAAKFDSSAGSPLSWLMTISHRRAVDRVRSAQSSSDREAKYGASSQDIEHDSVSDEVS  137

Query  123  AGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRN  182
            +  E   V  CL+ LT+TQ++ + LAYYGGLTY EV+ RL A + TIKSR+RD L  L+ 
Sbjct  138  SRLEAEAVVRCLETLTETQQESVRLAYYGGLTYREVAERLNAAVPTIKSRIRDGLIRLKT  197

Query  183  CLDVS  187
            CL VS
Sbjct  198  CLGVS  202


>gi|54022856|ref|YP_117098.1| RNA polymerase sigma factor SigK [Nocardia farcinica IFM 10152]
 gi|54014364|dbj|BAD55734.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=191

 Score =  189 bits (481),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 98/180 (55%), Positives = 122/180 (68%), Gaps = 0/180 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S +L ALL R    DQ AFAE YD T +RV+GLV+RVL+D GY+EETTQE+YL++WR A+
Sbjct  12   SIELAALLHRCGRADQHAFAELYDRTSARVFGLVLRVLQDPGYAEETTQEVYLQIWRTAA  71

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             FD  +GSA+ WL+T+AHRRAVDRVR EQA + RE  YGA  +D   D V +      E+
Sbjct  72   SFDPDRGSAMTWLMTLAHRRAVDRVRAEQAHSSREAAYGARVLDNEFDEVVEEVERRAEQ  131

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS  187
              V   L  LTDTQR+ I LAYYGG TY EV+  L   L T+KSR+RD L  L+  L V+
Sbjct  132  HAVRASLAELTDTQREAISLAYYGGRTYAEVAAHLGVGLPTVKSRIRDGLTRLKKSLGVT  191


>gi|226365661|ref|YP_002783444.1| RNA polymerase sigma factor SigK [Rhodococcus opacus B4]
 gi|226244151|dbj|BAH54499.1| RNA polymerase ECF-type sigma factor [Rhodococcus opacus B4]
Length=196

 Score =  187 bits (475),  Expect = 6e-46, Method: Compositional matrix adjust.
 Identities = 94/177 (54%), Positives = 121/177 (69%), Gaps = 0/177 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S++L   + RVA  D  AFAE YD T +RV+G+V+RVLRD GY+EETTQE++L+ WR AS
Sbjct  17   SAELYDTMARVANGDADAFAELYDRTSARVHGMVLRVLRDPGYAEETTQEVFLQAWRTAS  76

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             FD A+GS L+WL+T+AHRRAVDRVR EQAG  RE  Y   N+    D V +      E 
Sbjct  77   NFDPARGSVLSWLMTLAHRRAVDRVRSEQAGTDRESLYETTNIAGPFDHVTEEVTRRLEH  136

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            + V  CL +LTD QR+ + +AYY G TY EV+ +L   LST+K+R+RD L  LR CL
Sbjct  137  QSVLACLDSLTDMQRESVAMAYYDGRTYREVASQLGVALSTVKTRIRDGLTRLRGCL  193


>gi|262203950|ref|YP_003275158.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis 
DSM 43247]
 gi|262087297|gb|ACY23265.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis 
DSM 43247]
Length=192

 Score =  186 bits (472),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 96/178 (54%), Positives = 120/178 (68%), Gaps = 0/178 (0%)

Query  4    PPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVW  63
            P     DL ALL RV   D AAFA FYD T  RVYG+ +RV+RD G+SEE TQE+YL VW
Sbjct  7    PTAGPDDLGALLDRVGKGDAAAFATFYDLTAQRVYGMALRVIRDRGFSEEITQEVYLTVW  66

Query  64   RNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIA  123
            R A+ FD + GSAL+W+LTMAHRRAVDRVR E A  +R + +G A + P  D V +++  
Sbjct  67   RTANTFDGSSGSALSWVLTMAHRRAVDRVRSEVASRRRTLAHGQAAITPPFDEVTEISER  126

Query  124  GDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLR  181
             +  R V   L+ LT  QR+ IELAY+ GLTY EV+ RL   L T+KSR+RD +R LR
Sbjct  127  REAARLVRSGLQRLTPAQRESIELAYFDGLTYREVAERLQVALPTVKSRIRDGMRRLR  184


>gi|116671283|ref|YP_832216.1| ECF subfamily RNA polymerase sigma-24 factor [Arthrobacter sp. 
FB24]
 gi|116611392|gb|ABK04116.1| RNA polymerase, sigma subunit, ECF family [Arthrobacter sp. FB24]
Length=201

 Score =  184 bits (468),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 127/190 (67%), Gaps = 4/190 (2%)

Query  2    TGPPRLSSD----LDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQE  57
            T  P  S+D    L  LL R+A  DQ AFAEFY+ T  RV+G+  RVL D   SE+TTQE
Sbjct  12   TASPGTSADVNRRLGDLLARIADGDQGAFAEFYELTSRRVFGMARRVLIDPELSEDTTQE  71

Query  58   IYLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVV  117
            ++L+VW+NA++F+   GS LAWL+T++HRRAVD+VR  Q+   RE +YGA++ +   D V
Sbjct  72   VFLQVWQNAAKFNPEAGSPLAWLMTISHRRAVDKVRSSQSSTDREAKYGASSQEIDHDSV  131

Query  118  ADLAIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDAL  177
            +D   +  E   V  CL  LT+TQ+Q + LAYYGGLTY EV+ +L   + TIKSR+RD L
Sbjct  132  SDEVGSRLEAEAVVRCLDTLTETQQQSVRLAYYGGLTYREVAEKLNTAVPTIKSRIRDGL  191

Query  178  RSLRNCLDVS  187
              L+ CL VS
Sbjct  192  IRLKTCLGVS  201


>gi|163840027|ref|YP_001624432.1| RNA polymerase sigma factor [Renibacterium salmoninarum ATCC 
33209]
 gi|162953503|gb|ABY23018.1| RNA polymerase sigma factor [Renibacterium salmoninarum ATCC 
33209]
Length=223

 Score =  184 bits (468),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 125/186 (68%), Gaps = 3/186 (1%)

Query  5    PRLSSDLDAL---LRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLE  61
            P+    LD L   +R  A  +  AFAE Y  T  RVYG+  RVL D   +E+ TQE+YL+
Sbjct  38   PKPGQGLDVLVELIRATAQGNHEAFAELYRLTSRRVYGMARRVLIDAELAEDATQEVYLQ  97

Query  62   VWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLA  121
            +W+NA++FDS+ GS LAWL+T+AHRRAVD+VR  Q+   RE RYGAA+     D VAD  
Sbjct  98   IWQNAAKFDSSAGSPLAWLMTIAHRRAVDKVRSTQSSTDREARYGAASQGIEHDEVADAV  157

Query  122  IAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLR  181
                +   V +CL  LTDTQ++ ++LAYYGGLTY EV+ +L A + T+KSR+RD L  L+
Sbjct  158  SDKIDAESVVKCLATLTDTQQESVKLAYYGGLTYREVAEKLGAAVPTVKSRIRDGLLRLK  217

Query  182  NCLDVS  187
            +CL+VS
Sbjct  218  SCLEVS  223


>gi|262203588|ref|YP_003274796.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis 
DSM 43247]
 gi|262086935|gb|ACY22903.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis 
DSM 43247]
Length=198

 Score =  183 bits (464),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 87/179 (49%), Positives = 119/179 (67%), Gaps = 0/179 (0%)

Query  6    RLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRN  65
            R + +L ALL   AG D+ AFA  YD T SR+YGL  R++RD  Y+EE  QE YL+ W+ 
Sbjct  14   RAADELVALLTGAAGGDRGAFARLYDLTSSRIYGLAFRIVRDRHYAEEIVQEAYLQYWQK  73

Query  66   ASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGD  125
            A E+  A+GS ++W++T+AHRRAVDRVR E+   ++   YGAANV P   V  ++ +A D
Sbjct  74   APEYHPARGSVISWMMTIAHRRAVDRVRSEELQQRKVADYGAANVSPPQAVPLEIVVADD  133

Query  126  ERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            E   +  C+  LTD QR  IE++Y+ GL+Y EV+   +  L TIKSR+RD LR L+NCL
Sbjct  134  EAATLRSCMNELTDLQRDSIEMSYFNGLSYPEVAAETSTPLPTIKSRIRDGLRRLKNCL  192


>gi|326384206|ref|ZP_08205888.1| RNA polymerase sigma factor SigK [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326197071|gb|EGD54263.1| RNA polymerase sigma factor SigK [Gordonia neofelifaecis NRRL 
B-59395]
Length=184

 Score =  182 bits (462),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 94/174 (55%), Positives = 120/174 (69%), Gaps = 0/174 (0%)

Query  11   LDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFD  70
            L+ LL  VA  D+ AFA FYD T SRVYG+V+RVLRD GYSE+ TQE++L+VWR+A  FD
Sbjct  8    LERLLALVATGDRDAFATFYDRTGSRVYGMVLRVLRDPGYSEDVTQEVFLQVWRDAGRFD  67

Query  71   SAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRV  130
            + +GS ++W+LT+AHRRAVDRVR E + + RE RYG   +      V D  +A D   R 
Sbjct  68   ARQGSPVSWVLTIAHRRAVDRVRSETSTSARESRYGMRELAEVVAGVDDEVVARDAGDRA  127

Query  131  TECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             ECL  LT+ Q + + LAYY G TY EV+ RLA  L T+KSR+RD L+ LR CL
Sbjct  128  RECLGTLTELQSEAVCLAYYEGFTYREVADRLAVALPTVKSRIRDGLKRLRGCL  181


>gi|343927306|ref|ZP_08766782.1| RNA polymerase ECF-type sigma factor SigK [Gordonia alkanivorans 
NBRC 16433]
 gi|343762799|dbj|GAA13708.1| RNA polymerase ECF-type sigma factor SigK [Gordonia alkanivorans 
NBRC 16433]
Length=186

 Score =  179 bits (455),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/176 (54%), Positives = 117/176 (67%), Gaps = 0/176 (0%)

Query  9    SDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASE  68
            SDL+ LL RVA  D  AFA+FYD T  RVYG+ +RVLRD GYSEE TQE +L VWRNA  
Sbjct  4    SDLNNLLARVATGDMDAFAQFYDATCDRVYGMTLRVLRDPGYSEEATQETFLAVWRNAET  63

Query  69   FDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERR  128
            +D   GSAL+W+LT+AHRRAVDRVR E A  +R V YG A+     D V++     +  R
Sbjct  64   YDPRSGSALSWILTLAHRRAVDRVRSESAATRRTVAYGIADTSREIDEVSESVERREIAR  123

Query  129  RVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             +   L++LT  QRQ IELAY+ GLTY EV+  L   L T+KSR+RD L  LR  +
Sbjct  124  LIHTGLESLTPIQRQAIELAYFHGLTYREVAEHLGVALPTVKSRIRDGLIRLRQTV  179


>gi|290961588|ref|YP_003492770.1| sigma factor [Streptomyces scabiei 87.22]
 gi|260651114|emb|CBG74235.1| putative sigma factor [Streptomyces scabiei 87.22]
Length=180

 Score =  179 bits (454),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 95/173 (55%), Positives = 115/173 (67%), Gaps = 0/173 (0%)

Query  12   DALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDS  71
            D LL RVAG DQ AF + Y      V+GLV RV+RD   SEE  QE+ LE+WR+A  FD 
Sbjct  4    DRLLVRVAGGDQRAFEDLYAVVSGPVFGLVRRVVRDPAQSEEVAQEVLLELWRSAGRFDP  63

Query  72   AKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVT  131
            A+GSAL+W+LT+AHRRAVDRVR  +A  +RE R G  N  PA D VA+   AG ER+ V 
Sbjct  64   ARGSALSWILTLAHRRAVDRVRSARAATEREQREGRRNHHPAFDQVAEEVEAGLERQWVR  123

Query  132  ECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             CL  LT  QR+ + LAYY G TY EV+ RL+  L T+K+RMRD L  LR CL
Sbjct  124  HCLDKLTTLQRESVTLAYYDGYTYREVAERLSCPLGTVKTRMRDGLTRLRECL  176


>gi|297564275|ref|YP_003683248.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nocardiopsis 
dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848724|gb|ADH70742.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nocardiopsis 
dassonvillei subsp. dassonvillei DSM 43111]
Length=203

 Score =  178 bits (451),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 96/183 (53%), Positives = 118/183 (65%), Gaps = 2/183 (1%)

Query  4    PPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVW  63
            PP  +  L  LLR+VA  +++AF E YD     VYGLV RVLRD   SEE  QE+ +EVW
Sbjct  21   PP--AQRLTELLRQVARGEESAFGEVYDLVIPSVYGLVRRVLRDPAQSEEVAQEVMVEVW  78

Query  64   RNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIA  123
            R A  +D  +GS  AW++T+AHRRAVDRVR EQA   RE R  AA+     D VA+ A  
Sbjct  79   RTACRYDERRGSPQAWVMTLAHRRAVDRVRSEQAATDREARVAAASTQRPYDEVAEEATN  138

Query  124  GDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNC  183
              ER RV  CL+ LT+ Q Q + LAYYGG TY EV+R L+  L T+K+RMRD L  LR+C
Sbjct  139  RLERERVRRCLETLTELQGQSVRLAYYGGYTYREVARLLSTPLGTVKTRMRDGLIRLRDC  198

Query  184  LDV  186
            L V
Sbjct  199  LGV  201


>gi|302561480|ref|ZP_07313822.1| RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces griseoflavus 
Tu4000]
 gi|302479098|gb|EFL42191.1| RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces griseoflavus 
Tu4000]
Length=180

 Score =  177 bits (449),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 94/173 (55%), Positives = 113/173 (66%), Gaps = 0/173 (0%)

Query  12   DALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDS  71
            D LL RVAG DQ AF E Y      VYGLV RV+RD   SEE  QE+ LE+WR+A+ FD 
Sbjct  4    DELLVRVAGGDQKAFEELYGLVSGPVYGLVRRVVRDPAQSEEVAQEVLLELWRSAARFDP  63

Query  72   AKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVT  131
             +G+AL+W+LT+AHRRAVDRVR  +A  +RE R       PA D VA+   AG ER  V 
Sbjct  64   GRGTALSWVLTLAHRRAVDRVRSARAAGEREQREARRGPGPAFDQVAEEVEAGLEREWVR  123

Query  132  ECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             CL  LT  QRQ + LAYY G TY EV+ RL+  L T+K+RMRD L  LR+CL
Sbjct  124  RCLDRLTALQRQSVTLAYYDGYTYREVAERLSLPLGTVKTRMRDGLTRLRDCL  176


>gi|317509339|ref|ZP_07966959.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus 
ATCC BAA-974]
 gi|316252395|gb|EFV11845.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus 
ATCC BAA-974]
Length=192

 Score =  176 bits (446),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 92/178 (52%), Positives = 118/178 (67%), Gaps = 0/178 (0%)

Query  9    SDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASE  68
            ++L  LLR+VA  DQAAFA  YD T +RVYGL +RV RD   +E+  QE YL+VWR A  
Sbjct  11   AELARLLRQVATGDQAAFARLYDLTCARVYGLAVRVCRDRAVAEDVLQETYLQVWRAADA  70

Query  69   FDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERR  128
            F   +GSA +WLLT+AHRRAVDRVR E A  +RE  Y   N   A+    DL ++ +E  
Sbjct  71   FCPEQGSASSWLLTIAHRRAVDRVRSEVAARRREQEYSDENTPTAASDTVDLVVSREEGD  130

Query  129  RVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
             V  CL  LTD QR+ I LAY+GGL+Y EV++RL   L  +KSR+RD +R LR C++V
Sbjct  131  AVRNCLAKLTDAQRESIALAYFGGLSYPEVAQRLRLGLPAVKSRIRDGMRKLRECMEV  188


>gi|343927747|ref|ZP_08767215.1| RNA polymerase ECF-type sigma factor SigK [Gordonia alkanivorans 
NBRC 16433]
 gi|343762388|dbj|GAA14141.1| RNA polymerase ECF-type sigma factor SigK [Gordonia alkanivorans 
NBRC 16433]
Length=180

 Score =  174 bits (441),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 83/171 (49%), Positives = 114/171 (67%), Gaps = 0/171 (0%)

Query  14   LLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDSAK  73
            LL   +  D+AAF   YD T SR+YGL  RV+RD  Y+EE  QE YL+ W+ A ++ +A+
Sbjct  4    LLESASTGDRAAFTRLYDLTSSRIYGLAFRVVRDREYAEEIVQEAYLQYWQKADQYHAAR  63

Query  74   GSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVTEC  133
            GS L W++T+AHRRAVDRVR EQ    R   YGAA+V+   ++  ++ +  DE R +  C
Sbjct  64   GSVLTWMMTIAHRRAVDRVRSEQLQQDRMSDYGAASVETPRNIPLEVVVHADEARTLRTC  123

Query  134  LKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            L  LTD QR  IE++Y+GGLTY EV+++    L T+KSR+RD LR L+ CL
Sbjct  124  LGELTDLQRSSIEMSYFGGLTYPEVAQQTETPLPTVKSRIRDGLRRLKQCL  174


>gi|317123267|ref|YP_004097379.1| RNA polymerase, sigma subunit, ECF family [Intrasporangium calvum 
DSM 43043]
 gi|315587355|gb|ADU46652.1| RNA polymerase, sigma subunit, ECF family [Intrasporangium calvum 
DSM 43043]
Length=216

 Score =  173 bits (439),  Expect = 9e-42, Method: Compositional matrix adjust.
 Identities = 88/178 (50%), Positives = 120/178 (68%), Gaps = 0/178 (0%)

Query  10   DLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEF  69
            +L  LL R A  D+ AF EFYD T +RV+GLV RV+RD   SEE TQE++LE+WR ++ +
Sbjct  38   ELGDLLGRAATGDEGAFGEFYDRTSARVHGLVRRVVRDPAQSEEVTQEVFLELWRQSARY  97

Query  70   DSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRR  129
            DS KGS LAW++T+AHR+AVDRVR  ++   R+  YGAA VD A D  +++A+   E  R
Sbjct  98   DSGKGSVLAWVMTIAHRKAVDRVRSSESARGRDAAYGAATVDVAHDHTSEVAVQRLEGER  157

Query  130  VTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS  187
            V   L +LT+ QR+ +ELAY  G T+ EV+  L   L T K+R+RD L  LR+ L V+
Sbjct  158  VRRALGSLTEAQRRAVELAYLSGYTHTEVAGLLDLPLGTAKTRIRDGLIRLRDTLGVT  215


>gi|296141261|ref|YP_003648504.1| ECF subfamily RNA polymerase sigma-24 subunit [Tsukamurella paurometabola 
DSM 20162]
 gi|296029395|gb|ADG80165.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Tsukamurella 
paurometabola DSM 20162]
Length=189

 Score =  172 bits (437),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 90/179 (51%), Positives = 114/179 (64%), Gaps = 0/179 (0%)

Query  6    RLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRN  65
            R  SD DALL RVAG D  AF + YD T   VYG  +RV+ D GY EE TQE+YLE W  
Sbjct  3    RARSDADALLPRVAGGDVGAFRDLYDRTAHLVYGTAVRVIGDRGYGEEITQEVYLEAWHK  62

Query  66   ASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGD  125
            AS+FD A+GSA +WL+T+AHRRAVDRVR E+A   RE  +         D V++ A   +
Sbjct  63   ASDFDPARGSAQSWLVTIAHRRAVDRVRAERARGDRENTFATDAYQRPHDTVSEAAERNE  122

Query  126  ERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
            +   V +CL  L+ +QR  + LAYYGG TY EV+ +L   L TIK+R+RD +  LR CL
Sbjct  123  DATAVVDCLDTLSSSQRDALTLAYYGGHTYREVAEQLDTPLPTIKTRIRDGIARLRRCL  181


>gi|284031700|ref|YP_003381631.1| ECF subfamily RNA polymerase sigma-24 subunit [Kribbella flavida 
DSM 17836]
 gi|283810993|gb|ADB32832.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kribbella flavida 
DSM 17836]
Length=199

 Score =  172 bits (437),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 88/174 (51%), Positives = 116/174 (67%), Gaps = 0/174 (0%)

Query  14   LLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDSAK  73
            L+ RVA  D  AFA+ YD    RVYGL+ RVLR+   SEE TQE+ +EVWR  + +D+ +
Sbjct  24   LMARVARGDSDAFAQLYDQMVPRVYGLIRRVLRNPAQSEEVTQEVMVEVWRTCTRYDADR  83

Query  74   GSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVTEC  133
            GS  +W+LTMAHRRA+DRVR EQ+   RE    AA+     D VA+   +  E ++V  C
Sbjct  84   GSPASWILTMAHRRAIDRVRSEQSSTDREQAMAAASATTEYDEVAEAVTSNLEVQQVRNC  143

Query  134  LKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS  187
            L ALT+ QR+ + LAYYGG +Y EV+  L A L+TIK+RMRD L  LR+CL V+
Sbjct  144  LSALTELQRESVTLAYYGGYSYREVAELLDAKLATIKARMRDGLIRLRDCLGVT  197


>gi|297198607|ref|ZP_06916004.1| RNA polymerase sigma factor SigK [Streptomyces sviceus ATCC 29083]
 gi|197715425|gb|EDY59459.1| RNA polymerase sigma factor SigK [Streptomyces sviceus ATCC 29083]
Length=180

 Score =  172 bits (437),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 92/173 (54%), Positives = 112/173 (65%), Gaps = 0/173 (0%)

Query  12   DALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDS  71
            D LL  VAG DQ AF E Y      V+GLV RV+RD   SEE +QE+ LE WR+A+ FD 
Sbjct  4    DELLLLVAGGDQMAFEELYGLVAGPVFGLVRRVVRDPAQSEEVSQEVLLETWRSAARFDP  63

Query  72   AKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVT  131
             +GSAL+W+LT+AHRRAVDRVR  +A  +RE R       PA D V +   AG ER  V 
Sbjct  64   RRGSALSWILTLAHRRAVDRVRSARAAGEREQREAHRAHHPAFDQVTEEVEAGLEREWVR  123

Query  132  ECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             CL+ LT+ QRQ + LAYY G TY EV+ RL+  L T+K+RMRD L  LR CL
Sbjct  124  RCLERLTELQRQSVTLAYYDGYTYREVAERLSLPLGTVKTRMRDGLTRLRECL  176


>gi|29833124|ref|NP_827758.1| RNA polymerase sigma factor SigK [Streptomyces avermitilis MA-4680]
 gi|29610246|dbj|BAC74293.1| putative RNA polymerase ECF-subfamily sigma factor [Streptomyces 
avermitilis MA-4680]
Length=182

 Score =  171 bits (434),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 93/173 (54%), Positives = 111/173 (65%), Gaps = 0/173 (0%)

Query  12   DALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDS  71
            D LL  VA  DQ AF E Y      V+GLV RV+RD   SEE  QE+ LE+WR+A+ FD 
Sbjct  6    DELLVLVAEGDQRAFEELYGLVSGPVFGLVRRVVRDPAQSEEVAQEVLLELWRSAARFDP  65

Query  72   AKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVT  131
             +GSAL+W+LT+AHRRAVDRVR  +A  +RE R       PA D VA+   AG ER  V 
Sbjct  66   GRGSALSWILTLAHRRAVDRVRSARAAGEREQREALRAHHPAFDQVAEEVEAGLEREWVR  125

Query  132  ECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             CL  LT  QRQ + LAYY G TY EV+ RL+  L T+K+RMRD L  LRNCL
Sbjct  126  RCLDRLTALQRQSVTLAYYDGYTYREVAERLSLPLGTVKTRMRDGLTRLRNCL  178


>gi|300789324|ref|YP_003769615.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis 
mediterranei U32]
 gi|299798838|gb|ADJ49213.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis 
mediterranei U32]
Length=203

 Score =  171 bits (433),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 116/180 (65%), Gaps = 0/180 (0%)

Query  7    LSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNA  66
            L+   + LLRRVA  D+ AFA  YD     V GL  RVLR    +EE  QE+ +EVWR A
Sbjct  22   LAPSAEELLRRVAAGDETAFASLYDLVAGPVLGLATRVLRSHAQAEEVAQEVLVEVWRKA  81

Query  67   SEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDE  126
            + ++  +GSAL+W+LT+AHRRAVDRVR  QAG  RE R G  +V    D V +  +AG E
Sbjct  82   TRYEPERGSALSWVLTIAHRRAVDRVRSHQAGVDREERAGLMDVRRPFDEVTESTLAGLE  141

Query  127  RRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            ++RV +CL ALT+ QR+ I LAYY G TY EV+  L     T+K+R+RD L  LR+CL V
Sbjct  142  QQRVRQCLAALTELQRESIVLAYYNGYTYPEVAEVLKVAPGTVKTRIRDGLIRLRDCLGV  201


>gi|340530970|gb|AEK46175.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis 
mediterranei S699]
Length=198

 Score =  171 bits (433),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 116/180 (65%), Gaps = 0/180 (0%)

Query  7    LSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNA  66
            L+   + LLRRVA  D+ AFA  YD     V GL  RVLR    +EE  QE+ +EVWR A
Sbjct  17   LAPSAEELLRRVAAGDETAFASLYDLVAGPVLGLATRVLRSHAQAEEVAQEVLVEVWRKA  76

Query  67   SEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDE  126
            + ++  +GSAL+W+LT+AHRRAVDRVR  QAG  RE R G  +V    D V +  +AG E
Sbjct  77   TRYEPERGSALSWVLTIAHRRAVDRVRSHQAGVDREERAGLMDVRRPFDEVTESTLAGLE  136

Query  127  RRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDV  186
            ++RV +CL ALT+ QR+ I LAYY G TY EV+  L     T+K+R+RD L  LR+CL V
Sbjct  137  QQRVRQCLAALTELQRESIVLAYYNGYTYPEVAEVLKVAPGTVKTRIRDGLIRLRDCLGV  196


>gi|302857984|ref|XP_002959990.1| hypothetical protein VOLCADRAFT_101503 [Volvox carteri f. nagariensis]
 gi|300253642|gb|EFJ38945.1| hypothetical protein VOLCADRAFT_101503 [Volvox carteri f. nagariensis]
Length=403

 Score =  171 bits (432),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 82/149 (56%), Positives = 105/149 (71%), Gaps = 0/149 (0%)

Query  36   RVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCE  95
            RV+G+  RVL D   SE+ TQE+YL+VW+ A++FD A G+ LAWL+T+AHRRA+DRVR  
Sbjct  1    RVFGMARRVLIDPDLSEDATQEVYLQVWQGAAKFDRAAGTPLAWLMTIAHRRAIDRVRAV  60

Query  96   QAGNQREVRYGAANVDPASDVVADLAIAGDERRRVTECLKALTDTQRQCIELAYYGGLTY  155
            QA   RE +YGAA+ DP  D+V + A    E   V+ CL  LTDTQR+ + LAYYGGLTY
Sbjct  61   QAATDREAKYGAASQDPDRDLVTEEADTNLEAEAVSRCLGTLTDTQRESVRLAYYGGLTY  120

Query  156  VEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             EV+  L A + TIKSR+RD L  L+ CL
Sbjct  121  REVAEHLGAAVPTIKSRIRDGLLRLKTCL  149


>gi|291303344|ref|YP_003514622.1| ECF subfamily RNA polymerase sigma-24 subunit [Stackebrandtia 
nassauensis DSM 44728]
 gi|290572564|gb|ADD45529.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Stackebrandtia 
nassauensis DSM 44728]
Length=206

 Score =  170 bits (431),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 85/176 (49%), Positives = 116/176 (66%), Gaps = 0/176 (0%)

Query  12   DALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDS  71
            +ALL+R A  D+ AF   YD    RVYGL +RVLRD   +EE  Q++ +E+WR A+ FD 
Sbjct  30   EALLQRAALGDEDAFTVLYDRLSPRVYGLCLRVLRDPAQAEEVAQDVLVELWRTAARFDP  89

Query  72   AKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVT  131
            ++GSAL W+ T+ HRRAVDRVR  QA   RE R   +NV+P  D VA+      + R++ 
Sbjct  90   SQGSALTWVATLTHRRAVDRVRSTQASRDREHRSAVSNVEPEYDQVAEAVAQRLDMRQLR  149

Query  132  ECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS  187
             CLK LT+ Q Q + +AYYGG +Y +V+  L A + T+KSR+RD L  LR+CL+VS
Sbjct  150  RCLKTLTELQHQAVTMAYYGGHSYRQVANLLGAAVPTVKSRIRDGLIRLRDCLEVS  205


>gi|88855776|ref|ZP_01130439.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
 gi|88815100|gb|EAR24959.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
Length=198

 Score =  170 bits (430),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 84/174 (49%), Positives = 117/174 (68%), Gaps = 0/174 (0%)

Query  14   LLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDSAK  73
            LL RVA  DQAAF+  YD    RV+GLV R+LRD   SEE TQEI+LE+W+ A+ FD+ K
Sbjct  24   LLERVATGDQAAFSALYDQLAPRVFGLVKRLLRDHSQSEEVTQEIFLEIWQTATRFDANK  83

Query  74   GSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVTEC  133
            G+A++W+LTMAHRR VDRVR  Q+   R+VR G  + +P  D V++      E  RV + 
Sbjct  84   GAAVSWILTMAHRRTVDRVRSSQSSRDRDVRIGIRDHNPDYDHVSETIEVRLEHERVEKA  143

Query  134  LKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS  187
            +  LT+ QRQ + LAYYGG ++ EV+  L+  + T+K+R+RD +  LR+ L V+
Sbjct  144  MSRLTELQRQAVSLAYYGGYSHSEVATMLSVPVGTVKTRLRDGMIRLRDELGVA  197


>gi|308176807|ref|YP_003916213.1| RNA polymerase sigma factor [Arthrobacter arilaitensis Re117]
 gi|307744270|emb|CBT75242.1| RNA polymerase sigma factor [Arthrobacter arilaitensis Re117]
Length=185

 Score =  169 bits (427),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 84/176 (48%), Positives = 121/176 (69%), Gaps = 0/176 (0%)

Query  12   DALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDS  71
            DAL+++VA  +++AF   YD   SRV+GLV+RVLRD   SEE TQE ++E W+ A  FD 
Sbjct  10   DALMQQVALGEESAFELLYDAMASRVFGLVLRVLRDRAQSEEVTQEAFVEAWQQARRFDP  69

Query  72   AKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVT  131
            A+G+A +WLLT+AHRRAVDRVR  QA   R++R G  + + + D V + AI  DE +RV+
Sbjct  70   ARGTAASWLLTIAHRRAVDRVRSSQASQARDLRIGIKDFEDSYDDVEENAILQDEAQRVS  129

Query  132  ECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS  187
            + L+ LT  QR+ I LAY+GG T++EV+  L   + T K+R+RD +  LR+ + V+
Sbjct  130  QALQRLTVPQREAIHLAYFGGYTHLEVAEMLKIPVGTAKTRIRDGMSKLRDLMGVA  185


>gi|291440567|ref|ZP_06579957.1| RNA polymerase sigma factor SigK [Streptomyces ghanaensis ATCC 
14672]
 gi|291343462|gb|EFE70418.1| RNA polymerase sigma factor SigK [Streptomyces ghanaensis ATCC 
14672]
Length=180

 Score =  168 bits (426),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 92/173 (54%), Positives = 111/173 (65%), Gaps = 0/173 (0%)

Query  12   DALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDS  71
            D LL  VA  D  AF E Y      VYGLV RV+RD   SEE  QE+ LE+WR+A+ FD 
Sbjct  4    DELLVLVAEGDHKAFEELYGLVSGPVYGLVRRVVRDPAQSEEVAQEVLLELWRSAARFDP  63

Query  72   AKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVT  131
             +GSAL+W+LT+AHRRAVDRVR  +A  +RE R    +  PA D VA+   AG ER  V 
Sbjct  64   GRGSALSWVLTLAHRRAVDRVRSARAAGEREQREARRSDGPAFDHVAEEVEAGLEREWVR  123

Query  132  ECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL  184
             CL  LT  QRQ + LAYY G TY EV+ RL+  L T+K+RMRD L  LR+CL
Sbjct  124  RCLDRLTALQRQSVTLAYYEGYTYREVAERLSLPLGTVKTRMRDGLTRLRDCL  176


>gi|170781002|ref|YP_001709334.1| RNA polymerase sigma factor SigK [Clavibacter michiganensis subsp. 
sepedonicus]
 gi|169155570|emb|CAQ00687.1| putative RNA polymerase sigma factor [Clavibacter michiganensis 
subsp. sepedonicus]
Length=200

 Score =  168 bits (425),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 88/187 (48%), Positives = 120/187 (65%), Gaps = 1/187 (0%)

Query  1    MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL  60
            + GP    S  +ALL RVA  D+ AF+E YD    RV GLV R+L D   SEE TQEI+L
Sbjct  14   LPGPADPESK-EALLGRVAQGDRRAFSELYDQLAPRVLGLVRRLLVDHAQSEEVTQEIFL  72

Query  61   EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL  120
            E+W++AS FD AKG+A  W+LTMAHRRAVDRVR  Q+   R+VR G  + +   D V++ 
Sbjct  73   EIWQSASRFDPAKGAATTWVLTMAHRRAVDRVRASQSSRDRDVRIGIRDHEHGYDQVSET  132

Query  121  AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL  180
                 E  RVT+ +  LT+ QRQ + LAYYGG ++ EV+  L   + T+K+R+RD +  L
Sbjct  133  VEISIEHERVTKAMTKLTEIQRQAVSLAYYGGYSHSEVASMLDVPIGTVKTRLRDGMIRL  192

Query  181  RNCLDVS  187
            R+ + V+
Sbjct  193  RDEMGVA  199


>gi|326333192|ref|ZP_08199439.1| RNA polymerase sigma-70 factor, ECF subfamily [Nocardioidaceae 
bacterium Broad-1]
 gi|325948836|gb|EGD40929.1| RNA polymerase sigma-70 factor, ECF subfamily [Nocardioidaceae 
bacterium Broad-1]
Length=200

 Score =  168 bits (425),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 85/180 (48%), Positives = 115/180 (64%), Gaps = 0/180 (0%)

Query  8    SSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS  67
            S  L  LLR +A  D+AAFA  YD T +RV+GLV+RV+RD   +EE TQE +L+VWR AS
Sbjct  20   SPGLAGLLRSIARGDEAAFAALYDATSARVHGLVLRVVRDPAQAEEVTQETFLQVWRTAS  79

Query  68   EFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDER  127
             +D + GSA +WLLT+AHRRAVDRVR  ++  + +  Y      P  D  A+   A  E 
Sbjct  80   RYDESLGSAQSWLLTLAHRRAVDRVRSAESAGRNDTAYHGTTQTPPHDTTAETVEASLEA  139

Query  128  RRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS  187
            RRV   L+ LT  QR+ ++LAY+GG T+ EV+  L   + T K+R+RD L  LR+ + VS
Sbjct  140  RRVRSALETLTAAQREALQLAYFGGYTHTEVATMLDLPIGTAKTRIRDGLIRLRDAMGVS  199



Lambda     K      H
   0.320    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 180588168880




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40