BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0451c

Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607592|ref|NP_214965.1|  membrane protein [Mycobacterium tub...   288    2e-76
gi|240169833|ref|ZP_04748492.1|  membrane protein MmpS4_2 [Mycoba...   242    1e-62
gi|183980796|ref|YP_001849087.1|  membrane protein MmpS4_2 [Mycob...   226    7e-58
gi|333992658|ref|YP_004525272.1|  hypothetical protein JDM601_401...   219    2e-55
gi|15828277|ref|NP_302540.1|  small membrane protein [Mycobacteri...   202    1e-50
gi|183980130|ref|YP_001848421.1|  membrane protein MmpS5_3 [Mycob...   192    2e-47
gi|118473924|ref|YP_884793.1|  MmpS4 protein [Mycobacterium smegm...   189    1e-46
gi|5524339|gb|AAD44232.1|AF143772_38  TmtpA [Mycobacterium avium]      178    2e-43
gi|254819607|ref|ZP_05224608.1|  MmpS4 protein [Mycobacterium int...   178    2e-43
gi|41407339|ref|NP_960175.1|  MmpS4 [Mycobacterium avium subsp. p...   177    3e-43
gi|118470714|ref|YP_887799.1|  MmpS5 protein [Mycobacterium smegm...   175    2e-42
gi|118471113|ref|YP_884641.1|  MmpS5 protein [Mycobacterium smegm...   175    2e-42
gi|146760117|emb|CAJ77679.1|  mmps4 protein [Mycobacterium chelonae]   174    4e-42
gi|342858823|ref|ZP_08715478.1|  MmpS4 protein [Mycobacterium col...   173    7e-42
gi|169631195|ref|YP_001704844.1|  MmpS family protein [Mycobacter...   173    8e-42
gi|183980798|ref|YP_001849089.1|  hypothetical protein MMAR_0774 ...   172    1e-41
gi|169630231|ref|YP_001703880.1|  MmpS family protein [Mycobacter...   169    9e-41
gi|169631778|ref|YP_001705427.1|  membrane protein MmpS [Mycobact...   168    3e-40
gi|240169835|ref|ZP_04748494.1|  hypothetical protein MkanA1_1100...   166    1e-39
gi|296164400|ref|ZP_06846975.1|  MmpS family membrane protein [My...   159    9e-38
gi|118617881|ref|YP_906213.1|  membrane protein MmpS4 [Mycobacter...   152    1e-35
gi|118465434|ref|YP_883027.1|  MmpS4 protein [Mycobacterium avium...   152    1e-35
gi|169629386|ref|YP_001703035.1|  putative membrane protein MmpS ...   149    1e-34
gi|254776285|ref|ZP_05217801.1|  MmpS4 protein [Mycobacterium avi...   149    1e-34
gi|240172076|ref|ZP_04750735.1|  hypothetical protein MkanA1_2236...   149    1e-34
gi|15607817|ref|NP_215191.1|  hypothetical protein Rv0677c [Mycob...   149    2e-34
gi|169628228|ref|YP_001701877.1|  membrane protein MmpS [Mycobact...   148    3e-34
gi|183983169|ref|YP_001851460.1|  membrane protein MmpS4 [Mycobac...   143    7e-33
gi|254820444|ref|ZP_05225445.1|  hypothetical protein MintA_10976...   143    1e-32
gi|240171020|ref|ZP_04749679.1|  hypothetical protein MkanA1_1704...   143    1e-32
gi|118616542|ref|YP_904874.1|  transmembrane proteinm, MmpS5 [Myc...   143    1e-32
gi|254818587|ref|ZP_05223588.1|  membrane protein MmpS1 [Mycobact...   142    2e-32
gi|31792741|ref|NP_855234.1|  membrane protein [Mycobacterium bov...   142    2e-32
gi|296165068|ref|ZP_06847621.1|  MmpS family membrane protein [My...   142    2e-32
gi|339631627|ref|YP_004723269.1|  hypothetical protein MAF_15830 ...   141    3e-32
gi|183981710|ref|YP_001850001.1|  hypothetical protein MMAR_1696 ...   139    1e-31
gi|118462696|ref|YP_881703.1|  MmpS5 protein [Mycobacterium avium...   139    1e-31
gi|41407835|ref|NP_960671.1|  MmpS5 [Mycobacterium avium subsp. p...   139    1e-31
gi|120404792|ref|YP_954621.1|  hypothetical protein Mvan_3834 [My...   139    2e-31
gi|254820611|ref|ZP_05225612.1|  MmpS5 protein [Mycobacterium int...   138    3e-31
gi|183981736|ref|YP_001850027.1|  membrane protein MmpS1 [Mycobac...   138    3e-31
gi|118617529|ref|YP_905861.1|  hypothetical protein MUL_1935 [Myc...   137    4e-31
gi|108802138|ref|YP_642335.1|  hypothetical protein Mmcs_5175 [My...   137    5e-31
gi|120404167|ref|YP_953996.1|  hypothetical protein Mvan_3188 [My...   137    6e-31
gi|240172456|ref|ZP_04751115.1|  membrane transporter [Mycobacter...   137    8e-31
gi|333991846|ref|YP_004524460.1|  hypothetical protein JDM601_320...   136    9e-31
gi|296171261|ref|ZP_06852665.1|  MmpS family membrane protein [My...   136    1e-30
gi|342858162|ref|ZP_08714817.1|  hypothetical protein MCOL_04791 ...   136    1e-30
gi|240170826|ref|ZP_04749485.1|  membrane protein MmpS5_1 [Mycoba...   135    2e-30
gi|296164372|ref|ZP_06846949.1|  MmpS family membrane protein [My...   132    1e-29


>gi|15607592|ref|NP_214965.1| membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15839839|ref|NP_334876.1| hypothetical protein MT0467 [Mycobacterium tuberculosis CDC1551]
 gi|31791629|ref|NP_854122.1| membrane protein [Mycobacterium bovis AF2122/97]
 82 more sequence titles
 Length=140

 Score =  288 bits (738),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 139/140 (99%), Positives = 140/140 (100%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP
Sbjct  1    MLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV
Sbjct  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120

Query  121  RAERVSNEVNAYTYCLVKSA  140
            RAERVSNEVNAYTYCLVKSA
Sbjct  121  RAERVSNEVNAYTYCLVKSA  140


>gi|240169833|ref|ZP_04748492.1| membrane protein MmpS4_2 [Mycobacterium kansasii ATCC 12478]
Length=139

 Score =  242 bits (618),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 116/140 (83%), Positives = 127/140 (91%), Gaps = 1/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +L RTWI LVIL VVI GGFTVHRIRGFF SE R SYSD+NL+ SKPFNPK +TYE+FGP
Sbjct  1    MLSRTWIALVILAVVIAGGFTVHRIRGFFASEKRASYSDSNLD-SKPFNPKQITYEVFGP  59

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVADISYFDVNS+PQRVD AVLPWSLH TTN AAVMGN+VAQG+SDSIGCRITVDG V
Sbjct  60   PGTVADISYFDVNSDPQRVDQAVLPWSLHFTTNLAAVMGNLVAQGDSDSIGCRITVDGVV  119

Query  121  RAERVSNEVNAYTYCLVKSA  140
            +AE+VS+EVNAYTYCLVKSA
Sbjct  120  KAEKVSHEVNAYTYCLVKSA  139


>gi|183980796|ref|YP_001849087.1| membrane protein MmpS4_2 [Mycobacterium marinum M]
 gi|183174122|gb|ACC39232.1| conserved membrane protein MmpS4_2 [Mycobacterium marinum M]
Length=139

 Score =  226 bits (577),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 114/140 (82%), Positives = 130/140 (93%), Gaps = 1/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +L RTWI LVI+ V+IVGGF+VHRIRGFF SE R SYSD+NL+N KPFNPK +TYE+FGP
Sbjct  1    MLSRTWIVLVIVAVIIVGGFSVHRIRGFFASEKRESYSDSNLDN-KPFNPKEITYEVFGP  59

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVADISYFDVNS+PQ+V+GAVLPW+LH TTN AAVMGN+VAQGN++SIGCRITVDGKV
Sbjct  60   PGTVADISYFDVNSDPQQVEGAVLPWTLHFTTNLAAVMGNLVAQGNTNSIGCRITVDGKV  119

Query  121  RAERVSNEVNAYTYCLVKSA  140
            +AERVSNEVNAYTYCLVKSA
Sbjct  120  KAERVSNEVNAYTYCLVKSA  139


>gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_4018 [Mycobacterium sp. JDM601]
 gi|333488626|gb|AEF38018.1| membrane protein MmpS4_2 [Mycobacterium sp. JDM601]
Length=148

 Score =  219 bits (557),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 102/140 (73%), Positives = 117/140 (84%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            VL R WIPLVIL VV V GFTV RI G FGSE RPSY+D  ++ +KPFNPK +TYEIFGP
Sbjct  9    VLSRVWIPLVILAVVGVAGFTVTRIHGLFGSEKRPSYADGQIDETKPFNPKRMTYEIFGP  68

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVADISYFDVNSEPQRV    LPW L I T   AV+G+I+AQGNS+SIGCRITVDG+V
Sbjct  69   PGTVADISYFDVNSEPQRVQDVALPWQLEIVTTLPAVVGSIMAQGNSNSIGCRITVDGEV  128

Query  121  RAERVSNEVNAYTYCLVKSA  140
            +AER+SNEVNAYT+CL+K+A
Sbjct  129  KAERISNEVNAYTFCLLKAA  148


>gi|15828277|ref|NP_302540.1| small membrane protein [Mycobacterium leprae TN]
 gi|221230754|ref|YP_002504170.1| hypothetical protein MLBr_02377 [Mycobacterium leprae Br4923]
 gi|1731226|sp|P54880.1|MMPS4_MYCLE RecName: Full=Putative membrane protein mmpS4
 gi|699242|gb|AAA63005.1| u1740w [Mycobacterium leprae]
 gi|13093970|emb|CAC31893.1| conserved small membrane protein [Mycobacterium leprae]
 gi|219933861|emb|CAR72475.1| conserved small membrane protein [Mycobacterium leprae Br4923]
Length=154

 Score =  202 bits (514),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 122/140 (88%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +L R WIPLVILVV++VGGF V+R+  +F SE R SY+D+NL +SKPFNPK + YE+FGP
Sbjct  15   LLSRIWIPLVILVVLVVGGFVVYRVHSYFASEKRESYADSNLGSSKPFNPKQIVYEVFGP  74

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVADISYFD NS+PQR+DGA LPWSL +TT  AAVMGN+VAQGN+DSIGCRI VDG V
Sbjct  75   PGTVADISYFDANSDPQRIDGAQLPWSLLMTTTLAAVMGNLVAQGNTDSIGCRIIVDGVV  134

Query  121  RAERVSNEVNAYTYCLVKSA  140
            +AERVSNEVNAYTYCLVKSA
Sbjct  135  KAERVSNEVNAYTYCLVKSA  154


>gi|183980130|ref|YP_001848421.1| membrane protein MmpS5_3 [Mycobacterium marinum M]
 gi|183173456|gb|ACC38566.1| conserved membrane protein MmpS5_3 [Mycobacterium marinum M]
Length=145

 Score =  192 bits (487),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 87/140 (63%), Positives = 112/140 (80%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +L + WIPLVI+ VV V  F+V R+ GFFGS+    Y+D + +++ PFNPK LTYEIFGP
Sbjct  6    ILGKLWIPLVIVTVVGVTAFSVSRVHGFFGSQKPELYTDGSSDDATPFNPKQLTYEIFGP  65

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
             GTVADI YFDVN++P+RVDGA LPWSL I +  A++ GNIVAQG+S+ +GCRI VDG +
Sbjct  66   AGTVADIDYFDVNAQPRRVDGAHLPWSLEIKSTSASLTGNIVAQGDSNRLGCRIIVDGVI  125

Query  121  RAERVSNEVNAYTYCLVKSA  140
            +AER+S EVNAYT+C+VKSA
Sbjct  126  KAERISQEVNAYTFCIVKSA  145


>gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
 gi|82393549|gb|ABB72060.1| MmpS4 [Mycobacterium smegmatis str. MC2 155]
 gi|118175211|gb|ABK76107.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
Length=139

 Score =  189 bits (479),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 83/139 (60%), Positives = 108/139 (78%), Gaps = 0/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            + R WIPL+++ VV VGGFTV R+   FG+E RPSY+DT   +SKPF+PK LTYE+FGPP
Sbjct  1    MRRLWIPLLVIAVVAVGGFTVSRLHNVFGAEKRPSYADTKAADSKPFDPKRLTYEVFGPP  60

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            GT+ADISYFD +S PQ V+   LPWSLH        +G+I+AQG+SD+IGCRI VD +V+
Sbjct  61   GTLADISYFDEDSNPQFVEKVSLPWSLHFDIGKTTAVGSIMAQGDSDTIGCRIIVDDEVK  120

Query  122  AERVSNEVNAYTYCLVKSA  140
            AE+VSN+ NA+T CL+K+A
Sbjct  121  AEKVSNQTNAFTSCLLKAA  139


>gi|5524339|gb|AAD44232.1|AF143772_38 TmtpA [Mycobacterium avium]
Length=221

 Score =  178 bits (452),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 83/138 (61%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            L R WIPLVI+ VV+ GG TV R+ G FGSE RPSY+DT  +++KPFNPKH+ YE+FGP 
Sbjct  83   LKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQDTKPFNPKHVKYEVFGPA  142

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            G +ADISYFD N EPQ ++G  LPW+  I+T   +++GN+VAQGNSDS+GCRI VDG V+
Sbjct  143  GAMADISYFDANGEPQHINGVELPWTFDISTTLPSIVGNVVAQGNSDSLGCRILVDGVVK  202

Query  122  AERVSNEVNAYTYCLVKS  139
             ER+S+E+NA+TYC++ +
Sbjct  203  TERISHELNAFTYCVLTA  220


>gi|254819607|ref|ZP_05224608.1| MmpS4 protein [Mycobacterium intracellulare ATCC 13950]
Length=132

 Score =  178 bits (452),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 75/131 (58%), Positives = 106/131 (81%), Gaps = 0/131 (0%)

Query  9    LVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADIS  68
            +VI+ VVI GG TV R+ G FGSE+RPSY+++  +++KPFNPKH+ YE+FGP GT+ADIS
Sbjct  1    MVIVAVVIAGGMTVSRLHGVFGSEHRPSYAESRQQDTKPFNPKHVKYEVFGPAGTMADIS  60

Query  69   YFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNE  128
            YFD N EP  + G VLPW+  I+T   +++GN+VAQGNSD++GCRI VDG V+ ER+S++
Sbjct  61   YFDANGEPNHITGIVLPWTFDISTTLPSIVGNVVAQGNSDTLGCRIVVDGVVKTERISHQ  120

Query  129  VNAYTYCLVKS  139
            +NA+TYC++ +
Sbjct  121  LNAFTYCVLTA  131


>gi|41407339|ref|NP_960175.1| MmpS4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118464605|ref|YP_882429.1| MmpS4 protein [Mycobacterium avium 104]
 gi|254775696|ref|ZP_05217212.1| MmpS4 protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41395691|gb|AAS03558.1| MmpS4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165892|gb|ABK66789.1| MmpS4 protein [Mycobacterium avium 104]
 gi|336457975|gb|EGO36963.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=139

 Score =  177 bits (450),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 82/138 (60%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            + R WIPLVI+ VV+ GG TV R+ G FGSE RPSY+DT  +++KPFNPKH+ YE+FGP 
Sbjct  1    MKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQDTKPFNPKHVKYEVFGPA  60

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            G +ADISYFD N EPQ ++G  LPW+  I+T   +++GN+VAQGNSDS+GCRI VDG V+
Sbjct  61   GAMADISYFDANGEPQHINGVELPWTFDISTTLPSIVGNVVAQGNSDSLGCRILVDGVVK  120

Query  122  AERVSNEVNAYTYCLVKS  139
             ER+S+E+NA+TYC++ +
Sbjct  121  TERISHELNAFTYCVLTA  138


>gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172001|gb|ABK72897.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=158

 Score =  175 bits (444),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 80/137 (59%), Positives = 104/137 (76%), Gaps = 0/137 (0%)

Query  4    RTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGT  63
            R WIPL+I  VV VG FTV R+R FFGS + PS +   ++++KPF+PK + YEI+G PG 
Sbjct  22   RFWIPLLIGAVVFVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVVVYEIYGEPGA  81

Query  64   VADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAE  123
             ADI+Y D++++PQRVDGA LPWSL ++T   +V  NIVAQGN D+I CRITVD +++ E
Sbjct  82   TADINYLDLDAQPQRVDGATLPWSLTLSTTAPSVFPNIVAQGNGDTITCRITVDDELKDE  141

Query  124  RVSNEVNAYTYCLVKSA  140
            R SN VNA T+CLVKSA
Sbjct  142  RTSNGVNAQTFCLVKSA  158


>gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172400|gb|ABK73296.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=142

 Score =  175 bits (444),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 80/140 (58%), Positives = 107/140 (77%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +L R WIPL+I VVV+VG FTV R+R FFGS + PS +   ++++KPF+PK + YEI+G 
Sbjct  3    LLKRFWIPLLIGVVVLVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVVIYEIYGE  62

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PG  AD++Y D++++PQRVDG  LPW+L ++T   +V  NIVAQGN DSI CRITVD ++
Sbjct  63   PGATADVNYLDLDAQPQRVDGVSLPWTLTLSTTAPSVFPNIVAQGNGDSITCRITVDDEL  122

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER SN VNA T+CLVKSA
Sbjct  123  KDERTSNGVNAQTFCLVKSA  142


>gi|146760117|emb|CAJ77679.1| mmps4 protein [Mycobacterium chelonae]
Length=138

 Score =  174 bits (441),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 76/138 (56%), Positives = 104/138 (76%), Gaps = 0/138 (0%)

Query  3    MRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPG  62
            MR WIPL++L V+  GGFTV R+ G FGSENRPSY+DTN+ ++K F+PK ++YE+FG PG
Sbjct  1    MRLWIPLLVLAVIGAGGFTVSRLHGVFGSENRPSYADTNVSDAKSFDPKKMSYEVFGSPG  60

Query  63   TVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRA  122
             VADISYFDVN +P  +    LPWS+         +G+I+AQG+  SIGCRI VD +V++
Sbjct  61   NVADISYFDVNGDPLFIQKIPLPWSVKFEIGKTTAVGSIMAQGDGRSIGCRIIVDDEVKS  120

Query  123  ERVSNEVNAYTYCLVKSA  140
            E+V+N+ NA+T CL+K+A
Sbjct  121  EKVTNQTNAFTSCLLKAA  138


>gi|342858823|ref|ZP_08715478.1| MmpS4 protein [Mycobacterium colombiense CECT 3035]
 gi|342134527|gb|EGT87707.1| MmpS4 protein [Mycobacterium colombiense CECT 3035]
Length=159

 Score =  173 bits (439),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 81/138 (59%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            L R WIPLVI+ VV+ GG TV R+ G FGSE RPSY+++  +++KPFNPKH+ YE+FGP 
Sbjct  21   LGRLWIPLVIVAVVVAGGMTVSRLHGVFGSEKRPSYAESRQQDTKPFNPKHVKYEVFGPA  80

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            G++ADISYFD N EP  + G  LPW+  I+T   +++GN+VAQGNSDS+GCRI VDG V+
Sbjct  81   GSMADISYFDANGEPNHITGIELPWTFDISTTLPSIVGNVVAQGNSDSLGCRIVVDGVVK  140

Query  122  AERVSNEVNAYTYCLVKS  139
            AER+S+E+NA+TYC++ +
Sbjct  141  AERISHELNAFTYCVLTA  158


>gi|169631195|ref|YP_001704844.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
 gi|146760154|emb|CAJ77699.1| Mmps4 protein [Mycobacterium abscessus]
 gi|169243162|emb|CAM64190.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=138

 Score =  173 bits (438),  Expect = 8e-42, Method: Compositional matrix adjust.
 Identities = 74/138 (54%), Positives = 104/138 (76%), Gaps = 0/138 (0%)

Query  3    MRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPG  62
            MR WIPL+++ V+ VGGFTV R+ G FG+E RPSY+DTN+ ++K F+PK ++YE+FG PG
Sbjct  1    MRLWIPLLVIAVIAVGGFTVSRLHGVFGNEKRPSYADTNVSDAKSFDPKKMSYEVFGSPG  60

Query  63   TVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRA  122
             VADISYFDVN +P  +    LPWS+         +G+I+AQG+  SIGCRI VD +V++
Sbjct  61   NVADISYFDVNGDPLFIQKVPLPWSVKFEIGKTTAVGSIMAQGDGSSIGCRIIVDDEVKS  120

Query  123  ERVSNEVNAYTYCLVKSA  140
            E+V+N+ NA+T CL+K+A
Sbjct  121  EKVTNQTNAFTSCLLKAA  138


>gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 [Mycobacterium marinum M]
 gi|183174124|gb|ACC39234.1| conserved membrane protein [Mycobacterium marinum M]
Length=148

 Score =  172 bits (436),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 80/140 (58%), Positives = 108/140 (78%), Gaps = 2/140 (1%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFG-SENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            L RTWI LVIL VV++  F+V+R+R +FG  ++RP  S  + ++ KPFNPKH+ YE+FGP
Sbjct  10   LKRTWIALVILAVVVIAAFSVNRLRSYFGVHDDRPLTSGVS-DDIKPFNPKHVVYEVFGP  68

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVA+I+Y D+ ++PQRV G  LPW+L +TT   +V  N+VAQG++D IGCRI V+G+V
Sbjct  69   PGTVANINYLDIEAQPQRVSGVTLPWTLAVTTTLPSVSVNVVAQGDTDQIGCRIIVNGEV  128

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER  NEVNA T+CLVKSA
Sbjct  129  KDERSENEVNAQTFCLVKSA  148


>gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
 gi|169242198|emb|CAM63226.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=143

 Score =  169 bits (429),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 76/139 (55%), Positives = 103/139 (75%), Gaps = 0/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            + + W+PL+I  VV +GGF V R+RG FGSE+  + +D N +++ P+NPK L YEIFG P
Sbjct  5    IRKIWMPLLIAAVVAIGGFAVFRVRGIFGSESFGASADNNAKDAVPYNPKTLVYEIFGEP  64

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            G +AD++YF+ +++P RVD   LPW+  I +   ++ GNIVAQGN D IGCRITV+G+V+
Sbjct  65   GAMADVNYFNEDAQPTRVDNVQLPWAFKIVSTLPSLSGNIVAQGNGDQIGCRITVNGEVK  124

Query  122  AERVSNEVNAYTYCLVKSA  140
             ERVS E NAY YCLVKSA
Sbjct  125  MERVSTEHNAYIYCLVKSA  143


>gi|169631778|ref|YP_001705427.1| membrane protein MmpS [Mycobacterium abscessus ATCC 19977]
 gi|169243745|emb|CAM64773.1| Probable membrane protein, MmpS [Mycobacterium abscessus]
Length=136

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 74/135 (55%), Positives = 99/135 (74%), Gaps = 0/135 (0%)

Query  6    WIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVA  65
            WIPLV++VV I GGFTV R+ G FG+E RP Y+  + E  +P +PK+L YE+FGPPGTVA
Sbjct  2    WIPLVLVVVGIAGGFTVSRLHGVFGNERRPEYATADREEKRPHDPKYLVYEVFGPPGTVA  61

Query  66   DISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERV  125
             ISYFD ++EPQ +  A LPWS+     +A  MGNI AQG++DSIGCRI V  KV+ E++
Sbjct  62   TISYFDADAEPQVIRQAALPWSVEFPITEATAMGNITAQGDTDSIGCRILVGDKVKDEKI  121

Query  126  SNEVNAYTYCLVKSA  140
               V+A T+C++K+A
Sbjct  122  RYGVSALTFCMLKAA  136


>gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_11007 [Mycobacterium kansasii ATCC 
12478]
Length=148

 Score =  166 bits (420),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 80/139 (58%), Positives = 106/139 (77%), Gaps = 0/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            L R WIPLVI+ VV V GF+V+R+RGFFG  ++   +    ++ KPFNPKH+ YE+FGPP
Sbjct  10   LKRVWIPLVIVAVVAVAGFSVYRLRGFFGYTDKGPITSGIADDIKPFNPKHVVYEVFGPP  69

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            GT+A+I+Y D+N++PQRV    LPW+L +TT   +V  N+VAQGNSD IGCRI V+G+V+
Sbjct  70   GTIANINYLDINAQPQRVSNVPLPWTLSVTTTLPSVSVNVVAQGNSDQIGCRIIVNGEVK  129

Query  122  AERVSNEVNAYTYCLVKSA  140
             ER  N+VNA T+CLVKSA
Sbjct  130  DERSENQVNAQTFCLVKSA  148


>gi|296164400|ref|ZP_06846975.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900240|gb|EFG79671.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=116

 Score =  159 bits (403),  Expect = 9e-38, Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 92/115 (80%), Gaps = 0/115 (0%)

Query  25   IRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQRVDGAVL  84
            + G FGSE R SY+DT ++++KPFNPKH+ YEIFGPPGT ADISYFDV+  P  V+G  +
Sbjct  1    MHGIFGSEKRESYADTRIKDTKPFNPKHIRYEIFGPPGTTADISYFDVDGNPVHVNGQPV  60

Query  85   PWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVKS  139
            PWS  I+T   +++GN+VAQGN D +GCRI VDG V+AERVS+E+NA+TYC++ +
Sbjct  61   PWSFDISTTLPSILGNVVAQGNGDMLGCRIVVDGVVKAERVSHELNAFTYCMLTA  115


>gi|118617881|ref|YP_906213.1| membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
 gi|118569991|gb|ABL04742.1| conserved membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
Length=156

 Score =  152 bits (385),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 69/141 (49%), Positives = 97/141 (69%), Gaps = 1/141 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENS-KPFNPKHLTYEIFG  59
            VL R W+PLV+ VV  VGGF V R+RG FGS+  P+Y+D+    S     PK + YEIFG
Sbjct  16   VLKRAWLPLVLAVVFAVGGFAVSRVRGMFGSQQLPTYADSTPAGSVSSSGPKRVRYEIFG  75

Query  60   PPGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGK  119
             PGT+ADI+Y D   E Q+++   LPWS+ + T+  +++ NI+AQ N+D +GCRI+  G+
Sbjct  76   APGTIADINYMDPAGEAQQLNDVALPWSIEVETDAPSMVANIIAQANTDFLGCRISSGGE  135

Query  120  VRAERVSNEVNAYTYCLVKSA  140
            V+ ER S+ V+AY YC+ KSA
Sbjct  136  VKDERTSSAVSAYVYCIAKSA  156


>gi|118465434|ref|YP_883027.1| MmpS4 protein [Mycobacterium avium 104]
 gi|118166721|gb|ABK67618.1| MmpS4 protein [Mycobacterium avium 104]
Length=148

 Score =  152 bits (385),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 76/140 (55%), Positives = 102/140 (73%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            ++ R W+ LV++VVV V GF V+R+ G FGS N  S +    + ++PF+PKH+T E+FG 
Sbjct  9    LVKRGWMVLVVVVVVGVAGFCVYRLHGIFGSHNNTSAAGGISDQTEPFSPKHITLEVFGN  68

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PG VA I+Y D+N +P++V  A LPWSL + T       N+VAQGNSDS+GCRITVDG V
Sbjct  69   PGAVATINYVDINVQPRQVLNAALPWSLTMVTTQPGAFSNLVAQGNSDSLGCRITVDGDV  128

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER+ N+VNAYT+CLVKSA
Sbjct  129  KDERIVNQVNAYTFCLVKSA  148


>gi|169629386|ref|YP_001703035.1| putative membrane protein MmpS [Mycobacterium abscessus ATCC 
19977]
 gi|169241353|emb|CAM62381.1| Putative membrane protein, MmpS [Mycobacterium abscessus]
Length=133

 Score =  149 bits (377),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 67/133 (51%), Positives = 96/133 (73%), Gaps = 1/133 (0%)

Query  9    LVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADIS  68
            +V+++V+++ GF V RIRG FGS   P+Y+ +  ++     PKH+ YEIFGPPGT+ADI+
Sbjct  1    MVMVLVLVIAGFAVWRIRGIFGSHQLPTYAGSMTDDKNNSKPKHVLYEIFGPPGTIADIN  60

Query  69   YFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQG-NSDSIGCRITVDGKVRAERVSN  127
            Y D   EP +++GAVLPWS+ I T   ++ GNI+AQ  N+D +GCRIT + + + ER +N
Sbjct  61   YIDKEGEPHQINGAVLPWSIEIITTAPSMTGNILAQTRNADGLGCRITANDEKKDERYTN  120

Query  128  EVNAYTYCLVKSA  140
            EV+AY YC VKSA
Sbjct  121  EVSAYVYCFVKSA  133


>gi|254776285|ref|ZP_05217801.1| MmpS4 protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=134

 Score =  149 bits (376),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 68/122 (56%), Positives = 89/122 (73%), Gaps = 0/122 (0%)

Query  19   GFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQR  78
            GF V+R+ G FGS N  S +    + ++PF+PKH+T E+FG PG VA I+Y D+N +P++
Sbjct  13   GFCVYRLHGIFGSHNNTSAAGGISDQTEPFSPKHITLEVFGNPGAVATINYVDINVQPRQ  72

Query  79   VDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVK  138
            V  A LPWSL + T       N+VAQGNSDS+GCRITVDG V+ ER+ N+VNAYT+CLVK
Sbjct  73   VLNAALPWSLTMVTTQPGAFSNLVAQGNSDSLGCRITVDGDVKDERIVNQVNAYTFCLVK  132

Query  139  SA  140
            SA
Sbjct  133  SA  134


>gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_22360 [Mycobacterium kansasii ATCC 
12478]
Length=149

 Score =  149 bits (376),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 67/139 (49%), Positives = 95/139 (69%), Gaps = 0/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            L R WIPLV+ + V   GFTV+R+ G FG+    + S+ + +   PFNPK + YE+ GPP
Sbjct  11   LKRLWIPLVVSLTVATSGFTVYRLHGIFGAAGFSAISNGHADEIVPFNPKQVRYEVVGPP  70

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            GT   ISY D N+ PQ+    +LPW+   TT   AV  N+VAQG+S++IGCRI+V+G+++
Sbjct  71   GTTGSISYLDENAAPQQARFTMLPWTHTFTTTIPAVFANLVAQGDSNAIGCRISVNGEIK  130

Query  122  AERVSNEVNAYTYCLVKSA  140
             ++ + EVNA T+CLVKSA
Sbjct  131  EQQYATEVNAQTFCLVKSA  149


>gi|15607817|ref|NP_215191.1| hypothetical protein Rv0677c [Mycobacterium tuberculosis H37Rv]
 gi|15840080|ref|NP_335117.1| MmpS family membrane protein [Mycobacterium tuberculosis CDC1551]
 gi|31791861|ref|NP_854354.1| hypothetical protein Mb0696c [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=142

 Score =  149 bits (375),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 72/139 (52%), Positives = 96/139 (70%), Gaps = 1/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            L R WIPL+ILVVV + GFTV RIR FFGSE          ++ +PF+PK + YE+ G  
Sbjct  5    LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS-  63

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            G+  +I+Y D++++PQR+DGA LPWSL + T   +   NI+AQG+  SI CRITVDG+V+
Sbjct  64   GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK  123

Query  122  AERVSNEVNAYTYCLVKSA  140
             ER +  V+A TYC VKSA
Sbjct  124  DERTATGVDALTYCFVKSA  142


>gi|169628228|ref|YP_001701877.1| membrane protein MmpS [Mycobacterium abscessus ATCC 19977]
 gi|169240195|emb|CAM61223.1| Probable membrane protein, MmpS [Mycobacterium abscessus]
Length=133

 Score =  148 bits (373),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 66/133 (50%), Positives = 95/133 (72%), Gaps = 1/133 (0%)

Query  9    LVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADIS  68
            +V+++V+++ GF V RIRG FGS   P+Y+ +  ++     PKH+ YEIFGPPGT+ADI+
Sbjct  1    MVMVLVLVIAGFAVWRIRGIFGSHQLPTYAGSMTDDKNNSKPKHVLYEIFGPPGTIADIN  60

Query  69   YFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQG-NSDSIGCRITVDGKVRAERVSN  127
            Y D   EP +++GA LPWS+ I T   ++ GNI+AQ  N+D +GCRIT + + + ER +N
Sbjct  61   YIDKEGEPHQINGATLPWSIEIITTAPSMTGNILAQTRNADGLGCRITANDEKKDERYTN  120

Query  128  EVNAYTYCLVKSA  140
            EV+AY YC VKSA
Sbjct  121  EVSAYVYCFVKSA  133


>gi|183983169|ref|YP_001851460.1| membrane protein MmpS4 [Mycobacterium marinum M]
 gi|183176495|gb|ACC41605.1| conserved membrane protein MmpS4 [Mycobacterium marinum M]
Length=132

 Score =  143 bits (361),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 92/132 (70%), Gaps = 1/132 (0%)

Query  10   VILVVVIVGGFTVHRIRGFFGSENRPSYSD-TNLENSKPFNPKHLTYEIFGPPGTVADIS  68
            ++ VV  VGGF V R+RG FGS+  P+Y+D T   N     PK + YEIFG PGT+ADI+
Sbjct  1    MLAVVFAVGGFAVSRVRGMFGSQQLPTYADSTPAGNVSSSGPKRVRYEIFGAPGTIADIN  60

Query  69   YFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNE  128
            Y D   E Q+++   LPWS+ + T+  +++ NI+AQGNSD +GCRI+ DG+V+ ER S+ 
Sbjct  61   YMDPAGEAQQLNDVALPWSIEVETDAPSMVANIIAQGNSDFLGCRISSDGEVKDERTSSA  120

Query  129  VNAYTYCLVKSA  140
            V+AY YC+ KSA
Sbjct  121  VSAYVYCIAKSA  132


>gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976 [Mycobacterium intracellulare 
ATCC 13950]
Length=134

 Score =  143 bits (360),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 65/132 (50%), Positives = 94/132 (72%), Gaps = 0/132 (0%)

Query  9    LVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADIS  68
            +V ++VV + GF ++R+ G FGS +  + +        PFNPK +  E+FG PG VA I+
Sbjct  3    IVSVLVVALAGFGIYRLHGIFGSHDNTTANSGLAAEIVPFNPKQVVLEVFGAPGAVATIN  62

Query  69   YFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNE  128
            Y DVN++PQ+V  A LPWS  ITT + AV+GN+VAQGN D++GCRITV+G+V+ +R  ++
Sbjct  63   YLDVNAQPQQVKDAPLPWSFTITTTEPAVIGNVVAQGNGDTLGCRITVNGEVKDQRTVHK  122

Query  129  VNAYTYCLVKSA  140
            V+AYT+CL KS 
Sbjct  123  VDAYTFCLDKSG  134


>gi|240171020|ref|ZP_04749679.1| hypothetical protein MkanA1_17040 [Mycobacterium kansasii ATCC 
12478]
Length=134

 Score =  143 bits (360),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 69/122 (57%), Positives = 87/122 (72%), Gaps = 0/122 (0%)

Query  19   GFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQR  78
            GF V+R+ G FGS++  S +        PFNPK +T E+FG PGTVA I+Y DVN++PQ+
Sbjct  13   GFGVYRLHGIFGSQDDTSAAGGISNEIIPFNPKQVTLEVFGAPGTVATINYLDVNAQPQQ  72

Query  79   VDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVK  138
            V    LPWS  ITT   AV  N+VAQGNS+SIGCRITV+G V+ ER  N+VNAYT+CL K
Sbjct  73   VLDTTLPWSYTITTTQPAVFANVVAQGNSNSIGCRITVNGVVKDERTVNKVNAYTFCLDK  132

Query  139  SA  140
            S+
Sbjct  133  SS  134


>gi|118616542|ref|YP_904874.1| transmembrane proteinm, MmpS5 [Mycobacterium ulcerans Agy99]
 gi|183981027|ref|YP_001849318.1| transmembrane proteinm, MmpS5 [Mycobacterium marinum M]
 gi|118568652|gb|ABL03403.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium ulcerans 
Agy99]
 gi|183174353|gb|ACC39463.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium marinum 
M]
Length=142

 Score =  143 bits (360),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 94/140 (68%), Gaps = 1/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +L R WIPL+ILVVV + GFTV RIR FFG++           + +P++PK + YEI G 
Sbjct  4    ILKRAWIPLLILVVVAIAGFTVQRIRTFFGADGILVTPKVFANDPEPYDPKVVKYEISGS  63

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
             G+ A+I+Y D++++PQR+DGA LPWSL + T   +   NI+AQGN  SI CRI VD  V
Sbjct  64   -GSYANINYLDLDAKPQRIDGASLPWSLTLQTTAPSAAPNILAQGNGSSISCRIIVDDVV  122

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER +  V+A TYC VKSA
Sbjct  123  KDERTATGVDALTYCFVKSA  142


>gi|254818587|ref|ZP_05223588.1| membrane protein MmpS1 [Mycobacterium intracellulare ATCC 13950]
Length=142

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 62/140 (45%), Positives = 95/140 (68%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            ++ R W+PLV+++V+ +  F V R+ G FG ++  +     ++    FNPKH+ Y+++GP
Sbjct  3    LVKRAWVPLVMVLVIAIASFAVVRLHGVFGRQSVSAGGANGVDTLVQFNPKHVLYDVWGP  62

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
             GTV  + Y D +++PQRV  A +PWS  I T D AV+  +VAQG +DSIGCRITV+G+V
Sbjct  63   AGTVVQVDYLDEHAQPQRVATATVPWSYEIVTTDTAVIATVVAQGEADSIGCRITVNGEV  122

Query  121  RAERVSNEVNAYTYCLVKSA  140
            R +RV +   A T+C++KSA
Sbjct  123  RDQRVFDGHRAQTHCIMKSA  142


>gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bovis AF2122/97]
 gi|121637477|ref|YP_977700.1| putative membrane protein mmpS6 [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224989952|ref|YP_002644639.1| hypothetical protein JTY_1583 [Mycobacterium bovis BCG str. Tokyo 
172]
 17 more sequence titles
 Length=148

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 74/140 (53%), Positives = 99/140 (71%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            ++ R W+ LV + VV V GF+V+R+ G FGS +  S +     + KPFNPK +T E+FG 
Sbjct  9    LVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQVTLEVFGA  68

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVA I+Y DV++ P++V    LPWS  ITT   AV  N+VAQG+S+SIGCRITV+G V
Sbjct  69   PGTVATINYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGCRITVNGVV  128

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER+ NEV AYT+CL KS+
Sbjct  129  KDERIVNEVRAYTFCLDKSS  148


>gi|296165068|ref|ZP_06847621.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899561|gb|EFG79014.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=144

 Score =  142 bits (357),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 61/140 (44%), Positives = 103/140 (74%), Gaps = 1/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            V+   W+PL+I+ V++VGGF V R++ FFG+ +    +   L++SKPF PK + YE+FG 
Sbjct  6    VVRNAWLPLLIVAVLVVGGFAVARVKSFFGAHDTGILTSPRLDDSKPFKPKVVKYEVFGS  65

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
              + A+++Y D++++P+R+DGA LPW+L ++T   +V  N+ AQ + +S+GCRIT+D +V
Sbjct  66   ASS-ANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRITIDDEV  124

Query  121  RAERVSNEVNAYTYCLVKSA  140
            +AE +++ V+A T+C+VKSA
Sbjct  125  KAENMTHGVHALTFCMVKSA  144


>gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 [Mycobacterium africanum GM041182]
 gi|339330983|emb|CCC26655.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=148

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 73/140 (53%), Positives = 99/140 (71%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            ++ R W+ LV + VV V GF+V+R+ G FGS +  S +     + KPFNPK +T E+FG 
Sbjct  9    LVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQVTLEVFGA  68

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PGTVA ++Y DV++ P++V    LPWS  ITT   AV  N+VAQG+S+SIGCRITV+G V
Sbjct  69   PGTVATVNYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGCRITVNGVV  128

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER+ NEV AYT+CL KS+
Sbjct  129  KDERIVNEVRAYTFCLDKSS  148


>gi|183981710|ref|YP_001850001.1| hypothetical protein MMAR_1696 [Mycobacterium marinum M]
 gi|183175036|gb|ACC40146.1| conserved membrane protein [Mycobacterium marinum M]
Length=143

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 69/140 (50%), Positives = 98/140 (70%), Gaps = 0/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            ++ R W+ +V + VV++ GF ++R+ G FGS N  S ++       PFNPK +  ++FG 
Sbjct  4    LVRRGWMMIVAVAVVVIAGFAIYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDVFGA  63

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
            PG VA I+Y DVN++PQ+V  A LPWS  ITT + AV+GN+VAQGN  +IGCRITV+G+V
Sbjct  64   PGAVATINYLDVNAQPQQVVDAPLPWSFTITTTEPAVLGNVVAQGNGGTIGCRITVNGEV  123

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER+ N  +AYT+CL KS 
Sbjct  124  KDERIVNTPDAYTFCLDKSG  143


>gi|118462696|ref|YP_881703.1| MmpS5 protein [Mycobacterium avium 104]
 gi|118163983|gb|ABK64880.1| MmpS5 protein [Mycobacterium avium 104]
Length=144

 Score =  139 bits (350),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 61/135 (46%), Positives = 100/135 (75%), Gaps = 1/135 (0%)

Query  6    WIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVA  65
            W+PL+I+ VV+VGGF V R++ FFG+ +    +   L++SKPF PK + YE+FG   + A
Sbjct  11   WLPLLIVAVVLVGGFAVVRVKSFFGAHDTGILTSPRLDDSKPFKPKVVKYEVFGS-ASQA  69

Query  66   DISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERV  125
            +++Y D++++P+RVDGA LPW+L ++T   +V  N+ AQ + +++GCRIT+D +V+ E +
Sbjct  70   NVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRITIDDEVKDENI  129

Query  126  SNEVNAYTYCLVKSA  140
            ++ V+A T+CLVKSA
Sbjct  130  THGVHALTFCLVKSA  144


>gi|41407835|ref|NP_960671.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254775167|ref|ZP_05216683.1| MmpS5 protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41396189|gb|AAS04054.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=138

 Score =  139 bits (350),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 61/139 (44%), Positives = 101/139 (73%), Gaps = 1/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            +   W+PL+I+ VV+VGGF V R++ FFG+ +    +   L++SKPF PK + YE+FG  
Sbjct  1    MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDTGILTSPRLDDSKPFKPKVVKYEVFGS-  59

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
             + A+++Y D++++P+RVDGA LPW+L ++T   +V  N+ AQ + +++GCRIT+D +V+
Sbjct  60   ASQANVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRITIDDEVK  119

Query  122  AERVSNEVNAYTYCLVKSA  140
             E +++ V+A T+CLVKSA
Sbjct  120  DENITHGVHALTFCLVKSA  138


>gi|120404792|ref|YP_954621.1| hypothetical protein Mvan_3834 [Mycobacterium vanbaalenii PYR-1]
 gi|119957610|gb|ABM14615.1| hypothetical protein Mvan_3834 [Mycobacterium vanbaalenii PYR-1]
Length=139

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 71/139 (52%), Positives = 98/139 (71%), Gaps = 0/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            + R WIPLV+++V++VGG  V RIR  FGS   P+Y+ +  E+S   +PK + YEIFG P
Sbjct  1    MTRAWIPLVLVLVLVVGGLAVWRIRNIFGSHQLPTYAGSMSEDSNKSDPKIVRYEIFGDP  60

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            G  ADI+Y D   +P ++ GA LPWS+ + TN  A++GN+VAQG+SD IGCRI+ DG V+
Sbjct  61   GATADINYIDDEGDPNQIVGATLPWSIEVETNSPAMVGNVVAQGDSDFIGCRISADGVVK  120

Query  122  AERVSNEVNAYTYCLVKSA  140
             ER ++ V+AY YC  KSA
Sbjct  121  DERTAHNVSAYVYCFTKSA  139


>gi|254820611|ref|ZP_05225612.1| MmpS5 protein [Mycobacterium intracellulare ATCC 13950]
Length=138

 Score =  138 bits (347),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 60/139 (44%), Positives = 99/139 (72%), Gaps = 1/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            +   W+PL+I+ VV+VGGF V R++ FFG+ +    +   L+ SKPF PK + YE+FG  
Sbjct  1    MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDTGVMTSPRLDESKPFKPKVVKYEVFGSA  60

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
               A+++Y D++++P+R+DGA LPW+L ++T   +V  N+ AQ + +S+GCRIT+D +V+
Sbjct  61   AQ-ANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRITIDDEVK  119

Query  122  AERVSNEVNAYTYCLVKSA  140
             E +++ V+A T+C+VKSA
Sbjct  120  DENLTHGVHALTFCMVKSA  138


>gi|183981736|ref|YP_001850027.1| membrane protein MmpS1 [Mycobacterium marinum M]
 gi|183175062|gb|ACC40172.1| conserved membrane protein MmpS1 [Mycobacterium marinum M]
Length=142

 Score =  138 bits (347),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 67/137 (49%), Positives = 92/137 (68%), Gaps = 1/137 (0%)

Query  4    RTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGT  63
            R W+P+V+++V IVG   V R+ G FGS +R      N +    FNPK++ YE+FGPPGT
Sbjct  7    RMWVPIVMILVAIVGASVVMRLHGVFGS-HRYVPDAGNSDAIVAFNPKYVRYEVFGPPGT  65

Query  64   VADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAE  123
            V  ++Y D  +EP  V  A +PWSL I T   +V+ ++VAQGNS ++ CRITV+G VRAE
Sbjct  66   VVTVNYLDAQAEPHEVANAAIPWSLTIVTTLTSVVAHLVAQGNSATLSCRITVNGVVRAE  125

Query  124  RVSNEVNAYTYCLVKSA  140
            R ++  +A T CLVKSA
Sbjct  126  RTADAHDAATSCLVKSA  142


>gi|118617529|ref|YP_905861.1| hypothetical protein MUL_1935 [Mycobacterium ulcerans Agy99]
 gi|118569639|gb|ABL04390.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=134

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 64/122 (53%), Positives = 86/122 (71%), Gaps = 0/122 (0%)

Query  19   GFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQR  78
            GF ++R+ G FGS N  S ++       PFNPK +  ++FG PG VA I+Y DVN++PQ+
Sbjct  13   GFAIYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDVFGAPGAVATINYLDVNAQPQQ  72

Query  79   VDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVK  138
            V  A LPWS  ITT + AV+GN+VAQGN  +IGCRITV+G+V+ ER+ N  +AYT+CL K
Sbjct  73   VVDAPLPWSFTITTTEPAVLGNMVAQGNGGTIGCRITVNGEVKDERIVNTPDAYTFCLDK  132

Query  139  SA  140
            S 
Sbjct  133  SG  134


>gi|108802138|ref|YP_642335.1| hypothetical protein Mmcs_5175 [Mycobacterium sp. MCS]
 gi|119871291|ref|YP_941243.1| hypothetical protein Mkms_5264 [Mycobacterium sp. KMS]
 gi|126438119|ref|YP_001073810.1| membrane family protein [Mycobacterium sp. JLS]
 gi|108772557|gb|ABG11279.1| Mycobacterium membrane [Mycobacterium sp. MCS]
 gi|119697380|gb|ABL94453.1| Mycobacterium membrane family protein [Mycobacterium sp. KMS]
 gi|126237919|gb|ABO01320.1| membrane family protein [Mycobacterium sp. JLS]
Length=142

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 69/140 (50%), Positives = 97/140 (70%), Gaps = 1/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            V  + WIP+V++VVV++ GFTVHRIRGFFG++          ++ +PF+PK + YEI G 
Sbjct  4    VAKKAWIPIVVVVVVLIAGFTVHRIRGFFGADGITVTPRVFADDPEPFDPKVVRYEITGS  63

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
             G+ A+I+Y D++S+PQR+D   LPW + + T +A+   NI AQG+ DSI CRI VD +V
Sbjct  64   -GSYANINYLDLDSKPQRLDNTALPWEITLETTEASAAPNIFAQGDGDSITCRIIVDDEV  122

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER +  VNA TYC VKSA
Sbjct  123  KDERTATGVNALTYCFVKSA  142


>gi|120404167|ref|YP_953996.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
 gi|119956985|gb|ABM13990.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
Length=142

 Score =  137 bits (345),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 65/140 (47%), Positives = 95/140 (68%), Gaps = 1/140 (0%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGP  60
            +  + W+PL+I+VVV + G TV RIR FFG+E          +  +PF+PK + YEI G 
Sbjct  4    IAKKVWLPLLIVVVVAIAGLTVARIRTFFGAEGIIETPRNFADLPEPFDPKVVRYEITGS  63

Query  61   PGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKV  120
             G+ AD++Y D++++PQRVDGA LPWSL + T + +   NIVAQG+  +I CRI VD ++
Sbjct  64   -GSYADVNYLDLDAKPQRVDGAALPWSLTLETTEPSAAPNIVAQGDGSTITCRIFVDDEL  122

Query  121  RAERVSNEVNAYTYCLVKSA  140
            + ER ++ +NA T+C VKSA
Sbjct  123  KDERTTDGLNAQTFCFVKSA  142


>gi|240172456|ref|ZP_04751115.1| membrane transporter [Mycobacterium kansasii ATCC 12478]
Length=143

 Score =  137 bits (344),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 63/139 (46%), Positives = 93/139 (67%), Gaps = 0/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            L R WIPLV+++ ++ GG  V R+RG FGS+   +++  N    +  N K +TYE+FGP 
Sbjct  5    LKRGWIPLVVVIALVAGGIAVDRLRGVFGSDPIFTWTGANSGVIESINTKRVTYEVFGPA  64

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            GT   +SY +  ++P++     LPW+  +TT   AV+ N+VAQGNSDSIGCRITV+G V+
Sbjct  65   GTAGSVSYLNKETQPEQASFTSLPWTYTMTTTIPAVIANVVAQGNSDSIGCRITVNGAVK  124

Query  122  AERVSNEVNAYTYCLVKSA  140
             E+ S+  +A  +CLVK+A
Sbjct  125  DEQSSSGHHAQAFCLVKAA  143


>gi|333991846|ref|YP_004524460.1| hypothetical protein JDM601_3206 [Mycobacterium sp. JDM601]
 gi|333487814|gb|AEF37206.1| membrane protein MmpS4_2 [Mycobacterium sp. JDM601]
Length=119

 Score =  136 bits (343),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 65/120 (55%), Positives = 91/120 (76%), Gaps = 2/120 (1%)

Query  22   VHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQRVDG  81
            +HRIRG+FG ++  S S    E++KPF+PK + Y+IF P GT ADI+Y D+ + PQRVDG
Sbjct  1    MHRIRGYFGGDDSGS-SAAPFEDTKPFHPKVVVYDIFSPDGTYADINYLDLEATPQRVDG  59

Query  82   AVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNE-VNAYTYCLVKSA  140
            A LPWSL ++T + AV  NIVAQG+  +IGCR+T+DG+++ ERVS+  V+A T+C+VKS 
Sbjct  60   ASLPWSLTLSTTNPAVSPNIVAQGDGSTIGCRVTIDGELKDERVSSSPVSAQTFCIVKSG  119


>gi|296171261|ref|ZP_06852665.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894229|gb|EFG73986.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=134

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 62/122 (51%), Positives = 85/122 (70%), Gaps = 0/122 (0%)

Query  19   GFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQR  78
            GF ++R+ G FGS++  S +        PFNPKH+  E+FG PG  A I+Y DVN++PQ+
Sbjct  13   GFAIYRLNGIFGSQSGTSANSGLANEIVPFNPKHVVLEVFGRPGATATINYLDVNAQPQQ  72

Query  79   VDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVK  138
            V  A LPWS  ITT + AV+GN+VAQGN DS+GCRITV G+V+ +R  ++ +AYT+C  K
Sbjct  73   VKDAPLPWSFTITTTEPAVIGNVVAQGNGDSLGCRITVKGEVKDQRTVDKADAYTFCPDK  132

Query  139  SA  140
            S 
Sbjct  133  SG  134


>gi|342858162|ref|ZP_08714817.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT 
3035]
 gi|342133866|gb|EGT87046.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT 
3035]
Length=148

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 68/141 (49%), Positives = 99/141 (71%), Gaps = 2/141 (1%)

Query  1    VLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENS-KPFNPKHLTYEIFG  59
            +L R W+ +V ++VV + GF ++R+ G   S    S +++ L N   PFNPK +  E+FG
Sbjct  9    LLKRGWMVVVAVLVVALAGFGIYRLHGILWSHTSTS-ANSGLSNEIVPFNPKQVVLEVFG  67

Query  60   PPGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGK  119
             PG  A I+Y DVN++PQ+V  A LPWS  ITT + AV+GN+VAQG+ D++GCRITV+G+
Sbjct  68   APGATATINYLDVNAQPQQVKDASLPWSFTITTTEPAVIGNVVAQGDGDTLGCRITVNGE  127

Query  120  VRAERVSNEVNAYTYCLVKSA  140
            V+ +R  N+V+AYT+CL KS 
Sbjct  128  VKDQRTVNKVDAYTFCLDKSG  148


>gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycobacterium kansasii ATCC 12478]
Length=139

 Score =  135 bits (341),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 66/135 (49%), Positives = 95/135 (71%), Gaps = 1/135 (0%)

Query  6    WIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVA  65
            WIPLV+++V+ V G  V R+   FGS++  + +   +E  + FNPK +TYE+FGPPG+ A
Sbjct  6    WIPLVLVIVLAVSGLVVMRLHRIFGSQDLNANAGGGIEIVQ-FNPKVVTYEVFGPPGSTA  64

Query  66   DISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERV  125
            +I+Y+D ++   +V+ A LPWS+ I+T   +V  NI+AQG+   IGCRITVDG VR E+ 
Sbjct  65   NINYWDADANTHQVNAAPLPWSVTISTTLPSVSANIMAQGDGSRIGCRITVDGVVRQEKK  124

Query  126  SNEVNAYTYCLVKSA  140
            S+ VN  T+CLVKSA
Sbjct  125  SDGVNPQTFCLVKSA  139


>gi|296164372|ref|ZP_06846949.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900275|gb|EFG79704.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=139

 Score =  132 bits (333),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 68/139 (49%), Positives = 96/139 (70%), Gaps = 0/139 (0%)

Query  2    LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP  61
            + + WI LVI+ VV V GF V R+R FFG  +  + +    +  KPFNPK + Y+++GPP
Sbjct  1    MKKMWIVLVIVAVVAVAGFCVLRLRTFFGVHDDQTMTSGIADEIKPFNPKRVVYQVYGPP  60

Query  62   GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR  121
            GTVA+I+Y D+N++PQ+     LPW+L +T+   +V  NIVAQG+S+ IGCRI VD  V+
Sbjct  61   GTVANINYLDINAQPQKASNVPLPWTLSVTSTLPSVSVNIVAQGDSNQIGCRIIVDEVVK  120

Query  122  AERVSNEVNAYTYCLVKSA  140
             ER S  +NA T+C+VKSA
Sbjct  121  DERSSQGMNAQTFCIVKSA  139



Lambda     K      H
   0.320    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130895291376




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40