BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0454

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607595|ref|NP_214968.1|  hypothetical protein Rv0454 [Mycoba...   235    2e-60
gi|340625479|ref|YP_004743931.1|  hypothetical protein MCAN_04521...   228    2e-58
gi|699244|gb|AAA63007.1|  u1740u [Mycobacterium leprae]               45.1    0.003
gi|307106116|gb|EFN54363.1|  hypothetical protein CHLNCDRAFT_5318...  34.3    5.6  
gi|116623836|ref|YP_825992.1|  hypothetical protein Acid_4748 [Ca...  33.9    7.4  


>gi|15607595|ref|NP_214968.1| hypothetical protein Rv0454 [Mycobacterium tuberculosis H37Rv]
 gi|31791632|ref|NP_854125.1| hypothetical protein Mb0462 [Mycobacterium bovis AF2122/97]
 gi|121636368|ref|YP_976591.1| hypothetical protein BCG_0493 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 21 more sequence titles
 Length=116

 Score =  235 bits (599),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 115/116 (99%), Positives = 116/116 (100%), Gaps = 0/116 (0%)

Query  1    LKQDFGLDVPQAGNAQNFDGVPEWVQVGVVTFVYRMQMHHVTRPVGAPGSGLAGDSTPVQ  60
            +KQDFGLDVPQAGNAQNFDGVPEWVQVGVVTFVYRMQMHHVTRPVGAPGSGLAGDSTPVQ
Sbjct  1    MKQDFGLDVPQAGNAQNFDGVPEWVQVGVVTFVYRMQMHHVTRPVGAPGSGLAGDSTPVQ  60

Query  61   GRQRVWDLVAGRLTHAPRSSVQAMRPTMFTSAPQRHGIPARGRWWLGYQERSRAWP  116
            GRQRVWDLVAGRLTHAPRSSVQAMRPTMFTSAPQRHGIPARGRWWLGYQERSRAWP
Sbjct  61   GRQRVWDLVAGRLTHAPRSSVQAMRPTMFTSAPQRHGIPARGRWWLGYQERSRAWP  116


>gi|340625479|ref|YP_004743931.1| hypothetical protein MCAN_04521 [Mycobacterium canettii CIPT 
140010059]
 gi|340003669|emb|CCC42792.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=115

 Score =  228 bits (581),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 114/116 (99%), Positives = 115/116 (99%), Gaps = 1/116 (0%)

Query  1    LKQDFGLDVPQAGNAQNFDGVPEWVQVGVVTFVYRMQMHHVTRPVGAPGSGLAGDSTPVQ  60
            +KQDFGLDVPQAGNAQNFDGVPEWVQVGVVTFVYRMQMHHVTRPVGAPGSGLAGDSTPVQ
Sbjct  1    MKQDFGLDVPQAGNAQNFDGVPEWVQVGVVTFVYRMQMHHVTRPVGAPGSGLAGDSTPVQ  60

Query  61   GRQRVWDLVAGRLTHAPRSSVQAMRPTMFTSAPQRHGIPARGRWWLGYQERSRAWP  116
            GRQRVWDLVAGRLTHAPRSSVQAMRP MFTSAPQRHGIPARGRWWLGYQERSRAWP
Sbjct  61   GRQRVWDLVAGRLTHAPRSSVQAMRP-MFTSAPQRHGIPARGRWWLGYQERSRAWP  115


>gi|699244|gb|AAA63007.1| u1740u [Mycobacterium leprae]
Length=115

 Score = 45.1 bits (105),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 28/89 (32%), Positives = 47/89 (53%), Gaps = 5/89 (5%)

Query  8    DVPQAGN---AQNFDGVPEWVQVGVVTFVYRMQMHHVTRPVGAPGSGLAGDSTPVQGRQR  64
            D P+A +   AQ+ D V   VQ+ +  F+Y + +H +   +GA    LA +  P++G +R
Sbjct  25   DEPEAAHTAEAQDVDDVSAQVQIRIAAFIYGVPVHDMGSRIGAARFRLARELMPIEGSKR  84

Query  65   VWDLVAGRLTHAPRSSVQAMRPTMFTSAP  93
            V DLV   L H   +S+ +  P+   + P
Sbjct  85   VRDLVTRYLAHV--TSIVSPAPSCIGAEP  111


>gi|307106116|gb|EFN54363.1| hypothetical protein CHLNCDRAFT_53186 [Chlorella variabilis]
Length=3414

 Score = 34.3 bits (77),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 29/59 (50%), Gaps = 2/59 (3%)

Query  32   FVYRMQMHHVTRPVGAPGSGLAGDSTPVQGRQRVWDLVAGRLTHAPRSSVQAMRPTMFT  90
            FV RM   ++ R    PGS L GD +PV     +   +A +    P+S  + MRP M T
Sbjct  685  FVPRMLRRYILRSHPPPGSSLVGDGSPVH--DSIGKALASKAAAPPQSLSRVMRPCMDT  741


>gi|116623836|ref|YP_825992.1| hypothetical protein Acid_4748 [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116226998|gb|ABJ85707.1| hypothetical protein Acid_4748 [Candidatus Solibacter usitatus 
Ellin6076]
Length=492

 Score = 33.9 bits (76),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 19/51 (38%), Positives = 28/51 (55%), Gaps = 0/51 (0%)

Query  52   LAGDSTPVQGRQRVWDLVAGRLTHAPRSSVQAMRPTMFTSAPQRHGIPARG  102
            LAGD  P    +  +D++  R+   PRS++QAMR T +   P   G+  RG
Sbjct  379  LAGDFEPPAEHRSRYDILPVRVGTDPRSAMQAMRGTGYYKVPSLKGVWYRG  429



Lambda     K      H
   0.321    0.136    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130541267802




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40