BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0456B

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|253797383|ref|YP_003030384.1|  antitoxin [Mycobacterium tuberc...   114    4e-24
gi|289445998|ref|ZP_06435742.1|  antitoxin [Mycobacterium tubercu...  82.4    2e-14


>gi|253797383|ref|YP_003030384.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289441837|ref|ZP_06431581.1| antitoxin [Mycobacterium tuberculosis T46]
 gi|289573042|ref|ZP_06453269.1| antitoxin [Mycobacterium tuberculosis K85]
 10 more sequence titles
 
gi|289748943|ref|ZP_06508321.1| antitoxin [Mycobacterium tuberculosis T92]
 gi|308395454|ref|ZP_07669340.1| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|327488230|sp|P0CL57.1|MAZE1_MYCTU RecName: Full=Probable antitoxin MazE1
 gi|253318886|gb|ACT23489.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289414756|gb|EFD11996.1| antitoxin [Mycobacterium tuberculosis T46]
 gi|289537473|gb|EFD42051.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289689530|gb|EFD56959.1| antitoxin [Mycobacterium tuberculosis T92]
 gi|308367374|gb|EFP56225.1| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|323721130|gb|EGB30192.1| antitoxin [Mycobacterium tuberculosis CDC1551A]
 gi|328457169|gb|AEB02592.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=57

 Score =  114 bits (286),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 56/57 (99%), Positives = 57/57 (100%), Gaps = 0/57 (0%)

Query  1   ITTYYYVLLSVTTWVGLRHEAKRELVYRGRRSIGRMPREWACRRSRRFAANGVDAAR  57
           +TTYYYVLLSVTTWVGLRHEAKRELVYRGRRSIGRMPREWACRRSRRFAANGVDAAR
Sbjct  1   MTTYYYVLLSVTTWVGLRHEAKRELVYRGRRSIGRMPREWACRRSRRFAANGVDAAR  57


>gi|289445998|ref|ZP_06435742.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289418956|gb|EFD16157.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=41

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 40/41 (98%), Positives = 41/41 (100%), Gaps = 0/41 (0%)

Query  17  LRHEAKRELVYRGRRSIGRMPREWACRRSRRFAANGVDAAR  57
           +RHEAKRELVYRGRRSIGRMPREWACRRSRRFAANGVDAAR
Sbjct  1   MRHEAKRELVYRGRRSIGRMPREWACRRSRRFAANGVDAAR  41



Lambda     K      H
   0.328    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128599645896




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40