BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0461

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|253797388|ref|YP_003030389.1|  hypothetical protein TBMG_00463...   347    3e-94
gi|15607602|ref|NP_214975.1|  hypothetical protein Rv0461 [Mycoba...   346    7e-94
gi|15839850|ref|NP_334887.1|  hypothetical protein MT0477 [Mycoba...   346    8e-94
gi|289573047|ref|ZP_06453274.1|  transmembrane protein [Mycobacte...   344    3e-93
gi|254363425|ref|ZP_04979471.1|  hypothetical transmembrane prote...   320    7e-86
gi|289446003|ref|ZP_06435747.1|  transmembrane protein [Mycobacte...   314    3e-84
gi|240169844|ref|ZP_04748503.1|  hypothetical protein MkanA1_1105...   192    1e-47
gi|342859036|ref|ZP_08715690.1|  hypothetical protein MCOL_09168 ...   159    1e-37
gi|254819790|ref|ZP_05224791.1|  hypothetical protein MintA_07694...   154    3e-36
gi|183980807|ref|YP_001849098.1|  transmembrane protein [Mycobact...   144    5e-33
gi|118617097|ref|YP_905429.1|  transmembrane protein [Mycobacteri...   142    2e-32
gi|41410053|ref|NP_962889.1|  hypothetical protein MAP3955 [Mycob...   130    7e-29
gi|118463500|ref|YP_883816.1|  hypothetical protein MAV_4688 [Myc...   127    8e-28
gi|296168063|ref|ZP_06850129.1|  hypothetical transmembrane prote...   113    9e-24
gi|333989087|ref|YP_004521701.1|  transmembrane protein [Mycobact...   108    3e-22
gi|169631206|ref|YP_001704855.1|  hypothetical protein MAB_4128c ...  83.6    1e-14
gi|108797610|ref|YP_637807.1|  hypothetical protein Mmcs_0630 [My...  77.4    8e-13
gi|126433234|ref|YP_001068925.1|  hypothetical protein Mjls_0623 ...  77.0    9e-13
gi|120401808|ref|YP_951637.1|  hypothetical protein Mvan_0793 [My...  67.4    7e-10
gi|145220725|ref|YP_001131403.1|  hypothetical protein Mflv_0120 ...  65.9    2e-09
gi|297560439|ref|YP_003679413.1|  hypothetical protein Ndas_1476 ...  37.0    1.1  
gi|254444132|ref|ZP_05057608.1|  hypothetical protein VDG1235_237...  36.2    2.1  
gi|296446458|ref|ZP_06888402.1|  phosphate ABC transporter, inner...  35.0    4.0  
gi|239917383|ref|YP_002956941.1|  carbon starvation protein, memb...  34.7    5.4  
gi|319411751|emb|CBQ73794.1|  conserved hypothetical Ustilaginace...  34.7    5.5  
gi|321258562|ref|XP_003194002.1|  hypothetical protein CGB_D9230C...  34.3    6.1  
gi|289704775|ref|ZP_06501196.1|  carbon starvation protein [Micro...  34.3    6.7  


>gi|253797388|ref|YP_003030389.1| hypothetical protein TBMG_00463 [Mycobacterium tuberculosis KZN 
1435]
 gi|254230808|ref|ZP_04924135.1| hypothetical protein TBCG_00452 [Mycobacterium tuberculosis C]
 gi|254549408|ref|ZP_05139855.1| hypothetical protein Mtube_02933 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 34 more sequence titles
 Length=189

 Score =  347 bits (891),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 174/174 (100%), Positives = 174/174 (100%), Gaps = 0/174 (0%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  60
            VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct  16   VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  75

Query  61   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120
            SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct  76   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  135

Query  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct  136  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  189


>gi|15607602|ref|NP_214975.1| hypothetical protein Rv0461 [Mycobacterium tuberculosis H37Rv]
 gi|31791640|ref|NP_854133.1| hypothetical protein Mb0470 [Mycobacterium bovis AF2122/97]
 gi|121636376|ref|YP_976599.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 35 more sequence titles
 Length=174

 Score =  346 bits (888),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  60
            +PDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct  1    MPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  60

Query  61   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120
            SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct  61   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120

Query  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174


>gi|15839850|ref|NP_334887.1| hypothetical protein MT0477 [Mycobacterium tuberculosis CDC1551]
 gi|13879984|gb|AAK44701.1| hypothetical protein MT0477 [Mycobacterium tuberculosis CDC1551]
Length=200

 Score =  346 bits (887),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 174/174 (100%), Positives = 174/174 (100%), Gaps = 0/174 (0%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  60
            VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct  27   VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  86

Query  61   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120
            SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct  87   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  146

Query  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct  147  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  200


>gi|289573047|ref|ZP_06453274.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289537478|gb|EFD42056.1| transmembrane protein [Mycobacterium tuberculosis K85]
Length=174

 Score =  344 bits (883),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 172/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  60
            +PDFDTGA+SQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct  1    MPDFDTGANSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  60

Query  61   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120
            SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct  61   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120

Query  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174


>gi|254363425|ref|ZP_04979471.1| hypothetical transmembrane protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|134148939|gb|EBA40984.1| hypothetical transmembrane protein [Mycobacterium tuberculosis 
str. Haarlem]
Length=190

 Score =  320 bits (819),  Expect = 7e-86, Method: Compositional matrix adjust.
 Identities = 174/175 (99%), Positives = 174/175 (99%), Gaps = 1/175 (0%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  60
            VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct  16   VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH  75

Query  61   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120
            SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct  76   SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  135

Query  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG-YYYCERMSHCLVGVIPY  174
            GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG YYYCERMSHCLVGVIPY
Sbjct  136  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYYCERMSHCLVGVIPY  190


>gi|289446003|ref|ZP_06435747.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418961|gb|EFD16162.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A]
Length=159

 Score =  314 bits (805),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 158/159 (99%), Positives = 159/159 (100%), Gaps = 0/159 (0%)

Query  16   LAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWK  75
            +AGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWK
Sbjct  1    MAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWK  60

Query  76   FVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLIT  135
            FVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLIT
Sbjct  61   FVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLIT  120

Query  136  ALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            ALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct  121  ALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  159


>gi|240169844|ref|ZP_04748503.1| hypothetical protein MkanA1_11052 [Mycobacterium kansasii ATCC 
12478]
Length=188

 Score =  192 bits (488),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 115/180 (64%), Positives = 128/180 (72%), Gaps = 17/180 (9%)

Query  1    VPDFDTGAHSQRFLSLAGQ------QDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEP  54
            VPDFDTG+     L+ A +      Q +     P S+P   E P         +    EP
Sbjct  20   VPDFDTGSEPLPVLAAAAEKADAAPQAKDEPESPSSSPTVAEAPT--------DASTGEP  71

Query  55   AATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVY  114
            AA     V VPGRY YLKWWK +LV+LGVW GA EVGLSLFYWWYHTLDKTAAVFVVLVY
Sbjct  72   AAA---PVQVPGRYQYLKWWKLLLVILGVWFGAAEVGLSLFYWWYHTLDKTAAVFVVLVY  128

Query  115  VVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            VV C VGGLIL++V GRP+I ALS+GVMSGPFASVAAAAPLYGYYYCER+ HCLVGVIPY
Sbjct  129  VVGCAVGGLILSMVQGRPMIAALSIGVMSGPFASVAAAAPLYGYYYCERVGHCLVGVIPY  188


>gi|342859036|ref|ZP_08715690.1| hypothetical protein MCOL_09168 [Mycobacterium colombiense CECT 
3035]
 gi|342133277|gb|EGT86480.1| hypothetical protein MCOL_09168 [Mycobacterium colombiense CECT 
3035]
Length=195

 Score =  159 bits (403),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 99/179 (56%), Positives = 116/179 (65%), Gaps = 23/179 (12%)

Query  1    VPDFD--TGAHSQRFLSLAGQQDRAGKSWPG---STPKPQEDPVGVAPSASVEVLGSEPA  55
            VPDFD  TG H       A        + P      P+P E PVGV              
Sbjct  35   VPDFDDDTGEHPAATEPEAATGTAEEAATPAPDAGEPEPAE-PVGVV-------------  80

Query  56   ATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYV  115
                  + VPGRY YLKWWK  LV+LGVW  A  +GL LFYWWYH++DKTAA+FVVLVYV
Sbjct  81   ----QPINVPGRYLYLKWWKLALVLLGVWAAAAVIGLGLFYWWYHSVDKTAALFVVLVYV  136

Query  116  VACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            VAC VGG++LA+  GRPLI+ALS+  MSGPFA++ AAAPLYGYY+CER+ HCLVGVIPY
Sbjct  137  VACVVGGVMLAMTEGRPLISALSIATMSGPFAALVAAAPLYGYYHCERVGHCLVGVIPY  195


>gi|254819790|ref|ZP_05224791.1| hypothetical protein MintA_07694 [Mycobacterium intracellulare 
ATCC 13950]
Length=192

 Score =  154 bits (390),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 80/115 (70%), Positives = 95/115 (83%), Gaps = 0/115 (0%)

Query  60   HSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACT  119
             SVTVPGRY Y+KWWK  L++LGVW  A  VGL LF WWY ++DKT A+F VLVYV  C 
Sbjct  78   QSVTVPGRYFYVKWWKLALMLLGVWAAAAVVGLGLFSWWYGSIDKTPALFAVLVYVAVCV  137

Query  120  VGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            VGG++LA+V GRPL++ALS+ +MSGPFA+VA AAPLYGYYYCER+ HCLVGVIPY
Sbjct  138  VGGVMLAMVHGRPLVSALSVALMSGPFAAVAGAAPLYGYYYCERVGHCLVGVIPY  192


>gi|183980807|ref|YP_001849098.1| transmembrane protein [Mycobacterium marinum M]
 gi|183174133|gb|ACC39243.1| transmembrane protein [Mycobacterium marinum M]
Length=202

 Score =  144 bits (363),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 107/178 (61%), Positives = 122/178 (69%), Gaps = 8/178 (4%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQ-EDPVGVAPSASVEVLGSEPA---A  56
            VPDFDT   S+ F  LA     + KS        +   P+      S++  G  PA   A
Sbjct  29   VPDFDT--DSKPFAGLAAVVTESKKSSVELVDLSEVSAPLTTLDGDSLD--GDSPAEGTA  84

Query  57   TLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVV  116
            T A SVTVP RY YLKWWKFVLVVLGVW GA +VGLSLFYWW+HT+DKT  VFVVLVY+V
Sbjct  85   TPAPSVTVPSRYVYLKWWKFVLVVLGVWFGAAQVGLSLFYWWFHTIDKTLPVFVVLVYLV  144

Query  117  ACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
             C V  L+L++V GRPLITALSL +MS PFASVAAAAPLYG Y+CE  S CL GVIPY
Sbjct  145  LCAVASLLLSMVQGRPLITALSLALMSAPFASVAAAAPLYGSYFCEHASRCLAGVIPY  202


>gi|118617097|ref|YP_905429.1| transmembrane protein [Mycobacterium ulcerans Agy99]
 gi|118569207|gb|ABL03958.1| transmembrane protein [Mycobacterium ulcerans Agy99]
Length=189

 Score =  142 bits (359),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 106/178 (60%), Positives = 121/178 (68%), Gaps = 8/178 (4%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQ-EDPVGVAPSASVEVLGSEPA---A  56
            VPDFD    S+ F  LA     + KS        +   P+      S++  G  PA   A
Sbjct  16   VPDFDM--DSKPFAGLAAVVTESKKSSVELVDLSEVSAPLTTLDGDSLD--GDSPAEGTA  71

Query  57   TLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVV  116
            T A SVTVP RY YLKWWKFVLVVLGVW GA +VGLSLFYWW+HT+DKT  VFVVLVY+V
Sbjct  72   TPAPSVTVPSRYVYLKWWKFVLVVLGVWFGAAQVGLSLFYWWFHTIDKTLPVFVVLVYLV  131

Query  117  ACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
             C V  L+L++V GRPLITALSL +MS PFASVAAAAPLYG Y+CE  S CL GVIPY
Sbjct  132  LCAVASLLLSMVQGRPLITALSLALMSAPFASVAAAAPLYGSYFCEHASRCLAGVIPY  189


>gi|41410053|ref|NP_962889.1| hypothetical protein MAP3955 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398886|gb|AAS06505.1| hypothetical protein MAP_3955 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336460303|gb|EGO39203.1| hypothetical protein MAPs_40990 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=189

 Score =  130 bits (327),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 74/113 (66%), Positives = 94/113 (84%), Gaps = 0/113 (0%)

Query  62   VTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVG  121
            V VPGRY Y+KWWK VLV+L VW  +  +GL LF WWYH++DKT A+F VLV+V+ C VG
Sbjct  77   VAVPGRYFYVKWWKLVLVLLAVWAASAVIGLGLFSWWYHSIDKTPALFAVLVFVMVCVVG  136

Query  122  GLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            G++LA+V  RPLI+AL++ V+SGPFA++AAAAPLYGYYYC R+ HCLVGV+PY
Sbjct  137  GVMLAMVEARPLISALAVAVLSGPFAALAAAAPLYGYYYCARVGHCLVGVVPY  189


>gi|118463500|ref|YP_883816.1| hypothetical protein MAV_4688 [Mycobacterium avium 104]
 gi|254777125|ref|ZP_05218641.1| hypothetical protein MaviaA2_20999 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118164787|gb|ABK65684.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=187

 Score =  127 bits (318),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 76/113 (68%), Positives = 94/113 (84%), Gaps = 0/113 (0%)

Query  62   VTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVG  121
            V VPGRY Y+KWWK VLV+L VW  +  VGL LF WWYH++DKT A+F VLV+VV C VG
Sbjct  75   VAVPGRYFYVKWWKLVLVLLAVWAASAVVGLGLFSWWYHSIDKTPALFAVLVFVVVCVVG  134

Query  122  GLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            G++LA+V  RPLI+AL++ V+SGPFA++AAAAPLYGYYYC R+ HCLVGV+PY
Sbjct  135  GVMLAMVEARPLISALAVAVLSGPFAALAAAAPLYGYYYCARVGHCLVGVVPY  187


>gi|296168063|ref|ZP_06850129.1| hypothetical transmembrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896870|gb|EFG76498.1| hypothetical transmembrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=189

 Score =  113 bits (283),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 79/123 (65%), Positives = 95/123 (78%), Gaps = 0/123 (0%)

Query  52   SEPAATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVV  111
             E A      VTVPGRY YLKWWK +LV+LGVW  A   G  L YWWYH+ D+TAA+F V
Sbjct  67   DESAIAPVQPVTVPGRYFYLKWWKLLLVLLGVWSAAAVAGFGLSYWWYHSADQTAALFAV  126

Query  112  LVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGV  171
            LVYVVAC VGG++LA+  GRP+++ALSL VMS PFAS+AAAAP+ GYY+C R+ HCLVG+
Sbjct  127  LVYVVACAVGGVLLAMAEGRPVVSALSLAVMSAPFASLAAAAPVLGYYHCARVGHCLVGL  186

Query  172  IPY  174
            IPY
Sbjct  187  IPY  189


>gi|333989087|ref|YP_004521701.1| transmembrane protein [Mycobacterium sp. JDM601]
 gi|333485056|gb|AEF34448.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=181

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 78/173 (46%), Positives = 106/173 (62%), Gaps = 10/173 (5%)

Query  2    PDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHS  61
            P FDTG H      L+G+ +      PG   +P+ +P+G       E       A     
Sbjct  19   PIFDTGPHPAPLPGLSGELEPQ----PGLEARPEPEPIGP------ESKAGPAPAKPPKP  68

Query  62   VTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVG  121
            V V G+Y +LKWW+F LV++GVWI A  +GL LF WWY   DKT AVFVV+VY   C V 
Sbjct  69   VVVEGQYRFLKWWQFALVLVGVWIPAAGIGLGLFSWWYALADKTPAVFVVVVYAAVCVVA  128

Query  122  GLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY  174
            GLI+A+V  +PL++A++L +MS  FAS  AAAPLYG+Y+C+ +  C+ G+IPY
Sbjct  129  GLIVAMVGEKPLLSAVALALMSAVFASAVAAAPLYGHYFCQHVDRCVGGIIPY  181


>gi|169631206|ref|YP_001704855.1| hypothetical protein MAB_4128c [Mycobacterium abscessus ATCC 
19977]
 gi|169243173|emb|CAM64201.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=263

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 62/163 (39%), Positives = 81/163 (50%), Gaps = 21/163 (12%)

Query  4    FDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVT  63
            FD G+     +  A  + RA       TP P         + +V VLG EPA      V 
Sbjct  90   FDVGSDRTGAIPAAVGRSRAE----AMTPDPY--------TGAVPVLGDEPA----KPVR  133

Query  64   VPGRYT--YLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTL---DKTAAVFVVLVYVVAC  118
            VP       LK W  +L+++G WI A  VGL L+  W+ TL   D+  AV  VL +V AC
Sbjct  134  VPAEREPALLKRWVLLLILVGTWIPAAAVGLLLYQNWFATLLPHDRIVAVEYVLAWVFAC  193

Query  119  TVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYC  161
             +  L+LA+   RPLI AL+  V++ P  SVAAA   YGY  C
Sbjct  194  VLIALLLAMFEPRPLIVALAFAVLTAPAISVAAAGVKYGYVAC  236


>gi|108797610|ref|YP_637807.1| hypothetical protein Mmcs_0630 [Mycobacterium sp. MCS]
 gi|119866697|ref|YP_936649.1| hypothetical protein Mkms_0643 [Mycobacterium sp. KMS]
 gi|108768029|gb|ABG06751.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119692786|gb|ABL89859.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=180

 Score = 77.4 bits (189),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 63/155 (41%), Positives = 85/155 (55%), Gaps = 17/155 (10%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATL--  58
            +P FDTG  SQ           A +  P  T   + DP+      + E L  EP +    
Sbjct  18   LPTFDTGGFSQP----DPVTPLAARPEPTLTLDREPDPL------AYEALDFEPDSEPMV  67

Query  59   ---AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLD--KTAAVFVVLV  113
               A  V +PG Y +LK W F LV+  VW+ A  VG  L+YWW   LD  KT  V+VVLV
Sbjct  68   VPPAQPVVLPGSYQFLKRWVFALVLSAVWVVAAAVGAGLYYWWVGDLDPDKTWPVYVVLV  127

Query  114  YVVACTVGGLILALVPGRPLITALSLGVMSGPFAS  148
            Y++ CTV GLI+A+V  +P++TAL++ +MS P AS
Sbjct  128  YLLGCTVAGLIVAMVARKPVVTALAIALMSAPPAS  162


>gi|126433234|ref|YP_001068925.1| hypothetical protein Mjls_0623 [Mycobacterium sp. JLS]
 gi|126233034|gb|ABN96434.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=180

 Score = 77.0 bits (188),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 62/156 (40%), Positives = 85/156 (55%), Gaps = 17/156 (10%)

Query  1    VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATL--  58
            +P FDTG  SQ           A +  P  T   + DP+      + E L  EP +    
Sbjct  18   LPTFDTGGFSQP----DPVTPLAARPEPTLTLDREPDPL------AYEALDFEPDSEPMV  67

Query  59   ---AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLD--KTAAVFVVLV  113
               A  + +PG Y +LK W F LV+  VW+ A  VG  L+YWW   LD  KT  V+VVLV
Sbjct  68   VPPAQPIVLPGSYQFLKRWLFALVLSAVWVVAAAVGAGLYYWWVGDLDPDKTWPVYVVLV  127

Query  114  YVVACTVGGLILALVPGRPLITALSLGVMSGPFASV  149
            Y++ CTV GLI+A+V  +P++TAL++ +MS P AS 
Sbjct  128  YLLGCTVAGLIVAMVARKPVVTALAIALMSAPPAST  163


>gi|120401808|ref|YP_951637.1| hypothetical protein Mvan_0793 [Mycobacterium vanbaalenii PYR-1]
 gi|119954626|gb|ABM11631.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=129

 Score = 67.4 bits (163),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 56/127 (45%), Positives = 72/127 (57%), Gaps = 4/127 (3%)

Query  36   EDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLF  95
            ED + +   A  + L   PA      V VP     +  W+FVLVV G+WI A   G  L+
Sbjct  3    EDQIALDDPAYADELPRPPA----QPVVVPAAAQSVGRWRFVLVVAGMWIVAAAAGAGLY  58

Query  96   YWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPL  155
            YWWYH+ DK   VF VLV+VVAC VG L+ A+V  RP + A ++ +MS P A+   AA L
Sbjct  59   YWWYHSPDKAVPVFAVLVFVVACIVGSLLTAMVQDRPGVAATAIAMMSAPLAAAVGAAVL  118

Query  156  YGYYYCE  162
            YG Y  E
Sbjct  119  YGAYVFE  125


>gi|145220725|ref|YP_001131403.1| hypothetical protein Mflv_0120 [Mycobacterium gilvum PYR-GCK]
 gi|315442323|ref|YP_004075202.1| hypothetical protein Mspyr1_06630 [Mycobacterium sp. Spyr1]
 gi|145213211|gb|ABP42615.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315260626|gb|ADT97367.1| hypothetical protein Mspyr1_06630 [Mycobacterium sp. Spyr1]
Length=128

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 42/85 (50%), Positives = 55/85 (65%), Gaps = 0/85 (0%)

Query  59   AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVAC  118
            A  + VP     +  W+FVLV  G+WI A   G  L+YWW+H  DK+  VF VLV+VVAC
Sbjct  21   AQPIVVPSAEQSVSRWRFVLVTAGMWIAAAAAGAGLYYWWFHGADKSLPVFAVLVFVVAC  80

Query  119  TVGGLILALVPGRPLITALSLGVMS  143
            TVG L+ A+V  RP + A+SL +MS
Sbjct  81   TVGSLLTAMVQERPGLAAMSLALMS  105


>gi|297560439|ref|YP_003679413.1| hypothetical protein Ndas_1476 [Nocardiopsis dassonvillei subsp. 
dassonvillei DSM 43111]
 gi|296844887|gb|ADH66907.1| protein of unknown function DUF1212 [Nocardiopsis dassonvillei 
subsp. dassonvillei DSM 43111]
Length=468

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 39/115 (34%), Positives = 56/115 (49%), Gaps = 14/115 (12%)

Query  41   VAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWKFVLV----VLGVWIGAGEVGLSLFY  96
            +A SAS+ V G    AT A   TV G  T +   K  +     + G  + A  +G++L  
Sbjct  162  IASSASLMVGGGLIVATAAFLATVMGDRTSVFLAKRGVAEFYQMAGAAVVAATIGVALL-  220

Query  97   WWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAA  151
            W   TLD        L       + G I+AL+PGRPL+++L  G+ SG + S AA
Sbjct  221  WASTTLD--------LGLQAGAIITGNIMALLPGRPLVSSLQDGI-SGTYVSAAA  266


>gi|254444132|ref|ZP_05057608.1| hypothetical protein VDG1235_2371 [Verrucomicrobiae bacterium 
DG1235]
 gi|198258440|gb|EDY82748.1| hypothetical protein VDG1235_2371 [Verrucomicrobiae bacterium 
DG1235]
Length=1015

 Score = 36.2 bits (82),  Expect = 2.1, Method: Composition-based stats.
 Identities = 35/119 (30%), Positives = 51/119 (43%), Gaps = 18/119 (15%)

Query  3    DF-DTGAHSQRFLSLAGQQDRAGKSW----PGSTPKPQEDPVGVAPSASVEVL-----GS  52
            DF D  A   R     G ++ +  +W      S+  P   P G APS+ VE+L     GS
Sbjct  101  DFKDVAAEEVREAFWTGARNGSSTTWLVTRGFSSTAPAPVPKGTAPSSEVELLGEGTIGS  160

Query  53   EPAATL---AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAV  108
             P  T+      +TV G   Y       +   G W+  G++G+   Y WY   DKT ++
Sbjct  161  NPLLTVKVPKEPITVSGVDGYGNSAVLTIGNFGYWV--GDLGVKGSYAWY---DKTNSI  214


>gi|296446458|ref|ZP_06888402.1| phosphate ABC transporter, inner membrane subunit PstC [Methylosinus 
trichosporium OB3b]
 gi|296256093|gb|EFH03176.1| phosphate ABC transporter, inner membrane subunit PstC [Methylosinus 
trichosporium OB3b]
Length=343

 Score = 35.0 bits (79),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 24/72 (34%), Positives = 41/72 (57%), Gaps = 12/72 (16%)

Query  92   LSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGR-PLITALSLGVMS----GPF  146
            ++LF +++H L ++AA+ V+L+      +GG+I +L+ G  P I A  LG ++     P 
Sbjct  38   MALFDFFFHNLTRSAAILVLLI------LGGVIFSLIYGSLPAIRAFGLGFLTTESWNPV  91

Query  147  AS-VAAAAPLYG  157
                 A AP+YG
Sbjct  92   TEKFGAVAPIYG  103


>gi|239917383|ref|YP_002956941.1| carbon starvation protein, membrane protein [Micrococcus luteus 
NCTC 2665]
 gi|281414133|ref|ZP_06245875.1| carbon starvation protein, predicted membrane protein [Micrococcus 
luteus NCTC 2665]
 gi|239838590|gb|ACS30387.1| carbon starvation protein, predicted membrane protein [Micrococcus 
luteus NCTC 2665]
Length=753

 Score = 34.7 bits (78),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 30/97 (31%), Positives = 46/97 (48%), Gaps = 9/97 (9%)

Query  65   PGRYTYLKWWKFVL----VVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120
            PGR T +    FVL    ++ G W+   E G +LF     TLD+T   + V++Y     V
Sbjct  247  PGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALF-----TLDRTTIAWAVIIYGFVAAV  301

Query  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG  157
              + L L P   L T + +GV++G   ++    P  G
Sbjct  302  LPVWLLLAPRDYLSTFMKIGVIAGLALAIVVVQPRIG  338


>gi|319411751|emb|CBQ73794.1| conserved hypothetical Ustilaginaceae-specific protein [Sporisorium 
reilianum SRZ2]
Length=586

 Score = 34.7 bits (78),  Expect = 5.5, Method: Composition-based stats.
 Identities = 25/67 (38%), Positives = 32/67 (48%), Gaps = 12/67 (17%)

Query  2    PDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDP-VGVAPSASVEVLGSEPAATLAH  60
            P  +TG  S+   S A        SWP   P+P+E P  G+ PSA  EV    P AT  +
Sbjct  213  PVLETGGTSRNPWSAA--------SWP---PRPEEPPYAGMQPSAQEEVAPHWPPATAHN  261

Query  61   SVTVPGR  67
               +PGR
Sbjct  262  PSGIPGR  268


>gi|321258562|ref|XP_003194002.1| hypothetical protein CGB_D9230C [Cryptococcus gattii WM276]
 gi|317460472|gb|ADV22215.1| hypothetical protein CNJ00550 [Cryptococcus gattii WM276]
Length=551

 Score = 34.3 bits (77),  Expect = 6.1, Method: Composition-based stats.
 Identities = 16/58 (28%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  99   YHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLY  156
            Y+    + AVFV+ + +V+  VGG+   ++    +   ++LG + GP++ + + AP+Y
Sbjct  429  YYLTGSSNAVFVLALSLVSGNVGGVTKRVLASASIFLGVALGNIVGPYSFLDSEAPVY  486


>gi|289704775|ref|ZP_06501196.1| carbon starvation protein [Micrococcus luteus SK58]
 gi|289558491|gb|EFD51761.1| carbon starvation protein [Micrococcus luteus SK58]
Length=717

 Score = 34.3 bits (77),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 30/97 (31%), Positives = 46/97 (48%), Gaps = 9/97 (9%)

Query  65   PGRYTYLKWWKFVL----VVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV  120
            PGR T +    FVL    ++ G W+   E G +LF     TLD+T   + V++Y     V
Sbjct  211  PGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALF-----TLDRTTIAWAVIIYGFVAAV  265

Query  121  GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG  157
              + L L P   L T + +GV++G   ++    P  G
Sbjct  266  LPVWLLLAPRDYLSTFMKIGVIAGLALAIVVVQPRIG  302



Lambda     K      H
   0.322    0.138    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 142560794112




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40