BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0461
Length=174
Score E
Sequences producing significant alignments: (Bits) Value
gi|253797388|ref|YP_003030389.1| hypothetical protein TBMG_00463... 347 3e-94
gi|15607602|ref|NP_214975.1| hypothetical protein Rv0461 [Mycoba... 346 7e-94
gi|15839850|ref|NP_334887.1| hypothetical protein MT0477 [Mycoba... 346 8e-94
gi|289573047|ref|ZP_06453274.1| transmembrane protein [Mycobacte... 344 3e-93
gi|254363425|ref|ZP_04979471.1| hypothetical transmembrane prote... 320 7e-86
gi|289446003|ref|ZP_06435747.1| transmembrane protein [Mycobacte... 314 3e-84
gi|240169844|ref|ZP_04748503.1| hypothetical protein MkanA1_1105... 192 1e-47
gi|342859036|ref|ZP_08715690.1| hypothetical protein MCOL_09168 ... 159 1e-37
gi|254819790|ref|ZP_05224791.1| hypothetical protein MintA_07694... 154 3e-36
gi|183980807|ref|YP_001849098.1| transmembrane protein [Mycobact... 144 5e-33
gi|118617097|ref|YP_905429.1| transmembrane protein [Mycobacteri... 142 2e-32
gi|41410053|ref|NP_962889.1| hypothetical protein MAP3955 [Mycob... 130 7e-29
gi|118463500|ref|YP_883816.1| hypothetical protein MAV_4688 [Myc... 127 8e-28
gi|296168063|ref|ZP_06850129.1| hypothetical transmembrane prote... 113 9e-24
gi|333989087|ref|YP_004521701.1| transmembrane protein [Mycobact... 108 3e-22
gi|169631206|ref|YP_001704855.1| hypothetical protein MAB_4128c ... 83.6 1e-14
gi|108797610|ref|YP_637807.1| hypothetical protein Mmcs_0630 [My... 77.4 8e-13
gi|126433234|ref|YP_001068925.1| hypothetical protein Mjls_0623 ... 77.0 9e-13
gi|120401808|ref|YP_951637.1| hypothetical protein Mvan_0793 [My... 67.4 7e-10
gi|145220725|ref|YP_001131403.1| hypothetical protein Mflv_0120 ... 65.9 2e-09
gi|297560439|ref|YP_003679413.1| hypothetical protein Ndas_1476 ... 37.0 1.1
gi|254444132|ref|ZP_05057608.1| hypothetical protein VDG1235_237... 36.2 2.1
gi|296446458|ref|ZP_06888402.1| phosphate ABC transporter, inner... 35.0 4.0
gi|239917383|ref|YP_002956941.1| carbon starvation protein, memb... 34.7 5.4
gi|319411751|emb|CBQ73794.1| conserved hypothetical Ustilaginace... 34.7 5.5
gi|321258562|ref|XP_003194002.1| hypothetical protein CGB_D9230C... 34.3 6.1
gi|289704775|ref|ZP_06501196.1| carbon starvation protein [Micro... 34.3 6.7
>gi|253797388|ref|YP_003030389.1| hypothetical protein TBMG_00463 [Mycobacterium tuberculosis KZN
1435]
gi|254230808|ref|ZP_04924135.1| hypothetical protein TBCG_00452 [Mycobacterium tuberculosis C]
gi|254549408|ref|ZP_05139855.1| hypothetical protein Mtube_02933 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
34 more sequence titles
Length=189
Score = 347 bits (891), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 174/174 (100%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 60
VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct 16 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 75
Query 61 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct 76 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 135
Query 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct 136 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 189
>gi|15607602|ref|NP_214975.1| hypothetical protein Rv0461 [Mycobacterium tuberculosis H37Rv]
gi|31791640|ref|NP_854133.1| hypothetical protein Mb0470 [Mycobacterium bovis AF2122/97]
gi|121636376|ref|YP_976599.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
35 more sequence titles
Length=174
Score = 346 bits (888), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 60
+PDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct 1 MPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 60
Query 61 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct 61 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
Query 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
>gi|15839850|ref|NP_334887.1| hypothetical protein MT0477 [Mycobacterium tuberculosis CDC1551]
gi|13879984|gb|AAK44701.1| hypothetical protein MT0477 [Mycobacterium tuberculosis CDC1551]
Length=200
Score = 346 bits (887), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 174/174 (100%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 60
VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct 27 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 86
Query 61 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct 87 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 146
Query 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct 147 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 200
>gi|289573047|ref|ZP_06453274.1| transmembrane protein [Mycobacterium tuberculosis K85]
gi|289537478|gb|EFD42056.1| transmembrane protein [Mycobacterium tuberculosis K85]
Length=174
Score = 344 bits (883), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 172/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 60
+PDFDTGA+SQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct 1 MPDFDTGANSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 60
Query 61 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct 61 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
Query 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
>gi|254363425|ref|ZP_04979471.1| hypothetical transmembrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|134148939|gb|EBA40984.1| hypothetical transmembrane protein [Mycobacterium tuberculosis
str. Haarlem]
Length=190
Score = 320 bits (819), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 174/175 (99%), Gaps = 1/175 (0%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 60
VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH
Sbjct 16 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAH 75
Query 61 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV
Sbjct 76 SVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 135
Query 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG-YYYCERMSHCLVGVIPY 174
GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG YYYCERMSHCLVGVIPY
Sbjct 136 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYYCERMSHCLVGVIPY 190
>gi|289446003|ref|ZP_06435747.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A]
gi|289418961|gb|EFD16162.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A]
Length=159
Score = 314 bits (805), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/159 (99%), Positives = 159/159 (100%), Gaps = 0/159 (0%)
Query 16 LAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWK 75
+AGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWK
Sbjct 1 MAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWK 60
Query 76 FVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLIT 135
FVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLIT
Sbjct 61 FVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLIT 120
Query 136 ALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
ALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY
Sbjct 121 ALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 159
>gi|240169844|ref|ZP_04748503.1| hypothetical protein MkanA1_11052 [Mycobacterium kansasii ATCC
12478]
Length=188
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/180 (64%), Positives = 128/180 (72%), Gaps = 17/180 (9%)
Query 1 VPDFDTGAHSQRFLSLAGQ------QDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEP 54
VPDFDTG+ L+ A + Q + P S+P E P + EP
Sbjct 20 VPDFDTGSEPLPVLAAAAEKADAAPQAKDEPESPSSSPTVAEAPT--------DASTGEP 71
Query 55 AATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVY 114
AA V VPGRY YLKWWK +LV+LGVW GA EVGLSLFYWWYHTLDKTAAVFVVLVY
Sbjct 72 AAA---PVQVPGRYQYLKWWKLLLVILGVWFGAAEVGLSLFYWWYHTLDKTAAVFVVLVY 128
Query 115 VVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
VV C VGGLIL++V GRP+I ALS+GVMSGPFASVAAAAPLYGYYYCER+ HCLVGVIPY
Sbjct 129 VVGCAVGGLILSMVQGRPMIAALSIGVMSGPFASVAAAAPLYGYYYCERVGHCLVGVIPY 188
>gi|342859036|ref|ZP_08715690.1| hypothetical protein MCOL_09168 [Mycobacterium colombiense CECT
3035]
gi|342133277|gb|EGT86480.1| hypothetical protein MCOL_09168 [Mycobacterium colombiense CECT
3035]
Length=195
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/179 (56%), Positives = 116/179 (65%), Gaps = 23/179 (12%)
Query 1 VPDFD--TGAHSQRFLSLAGQQDRAGKSWPG---STPKPQEDPVGVAPSASVEVLGSEPA 55
VPDFD TG H A + P P+P E PVGV
Sbjct 35 VPDFDDDTGEHPAATEPEAATGTAEEAATPAPDAGEPEPAE-PVGVV------------- 80
Query 56 ATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYV 115
+ VPGRY YLKWWK LV+LGVW A +GL LFYWWYH++DKTAA+FVVLVYV
Sbjct 81 ----QPINVPGRYLYLKWWKLALVLLGVWAAAAVIGLGLFYWWYHSVDKTAALFVVLVYV 136
Query 116 VACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
VAC VGG++LA+ GRPLI+ALS+ MSGPFA++ AAAPLYGYY+CER+ HCLVGVIPY
Sbjct 137 VACVVGGVMLAMTEGRPLISALSIATMSGPFAALVAAAPLYGYYHCERVGHCLVGVIPY 195
>gi|254819790|ref|ZP_05224791.1| hypothetical protein MintA_07694 [Mycobacterium intracellulare
ATCC 13950]
Length=192
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/115 (70%), Positives = 95/115 (83%), Gaps = 0/115 (0%)
Query 60 HSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACT 119
SVTVPGRY Y+KWWK L++LGVW A VGL LF WWY ++DKT A+F VLVYV C
Sbjct 78 QSVTVPGRYFYVKWWKLALMLLGVWAAAAVVGLGLFSWWYGSIDKTPALFAVLVYVAVCV 137
Query 120 VGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
VGG++LA+V GRPL++ALS+ +MSGPFA+VA AAPLYGYYYCER+ HCLVGVIPY
Sbjct 138 VGGVMLAMVHGRPLVSALSVALMSGPFAAVAGAAPLYGYYYCERVGHCLVGVIPY 192
>gi|183980807|ref|YP_001849098.1| transmembrane protein [Mycobacterium marinum M]
gi|183174133|gb|ACC39243.1| transmembrane protein [Mycobacterium marinum M]
Length=202
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/178 (61%), Positives = 122/178 (69%), Gaps = 8/178 (4%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQ-EDPVGVAPSASVEVLGSEPA---A 56
VPDFDT S+ F LA + KS + P+ S++ G PA A
Sbjct 29 VPDFDT--DSKPFAGLAAVVTESKKSSVELVDLSEVSAPLTTLDGDSLD--GDSPAEGTA 84
Query 57 TLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVV 116
T A SVTVP RY YLKWWKFVLVVLGVW GA +VGLSLFYWW+HT+DKT VFVVLVY+V
Sbjct 85 TPAPSVTVPSRYVYLKWWKFVLVVLGVWFGAAQVGLSLFYWWFHTIDKTLPVFVVLVYLV 144
Query 117 ACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
C V L+L++V GRPLITALSL +MS PFASVAAAAPLYG Y+CE S CL GVIPY
Sbjct 145 LCAVASLLLSMVQGRPLITALSLALMSAPFASVAAAAPLYGSYFCEHASRCLAGVIPY 202
>gi|118617097|ref|YP_905429.1| transmembrane protein [Mycobacterium ulcerans Agy99]
gi|118569207|gb|ABL03958.1| transmembrane protein [Mycobacterium ulcerans Agy99]
Length=189
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/178 (60%), Positives = 121/178 (68%), Gaps = 8/178 (4%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQ-EDPVGVAPSASVEVLGSEPA---A 56
VPDFD S+ F LA + KS + P+ S++ G PA A
Sbjct 16 VPDFDM--DSKPFAGLAAVVTESKKSSVELVDLSEVSAPLTTLDGDSLD--GDSPAEGTA 71
Query 57 TLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVV 116
T A SVTVP RY YLKWWKFVLVVLGVW GA +VGLSLFYWW+HT+DKT VFVVLVY+V
Sbjct 72 TPAPSVTVPSRYVYLKWWKFVLVVLGVWFGAAQVGLSLFYWWFHTIDKTLPVFVVLVYLV 131
Query 117 ACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
C V L+L++V GRPLITALSL +MS PFASVAAAAPLYG Y+CE S CL GVIPY
Sbjct 132 LCAVASLLLSMVQGRPLITALSLALMSAPFASVAAAAPLYGSYFCEHASRCLAGVIPY 189
>gi|41410053|ref|NP_962889.1| hypothetical protein MAP3955 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398886|gb|AAS06505.1| hypothetical protein MAP_3955 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460303|gb|EGO39203.1| hypothetical protein MAPs_40990 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=189
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/113 (66%), Positives = 94/113 (84%), Gaps = 0/113 (0%)
Query 62 VTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVG 121
V VPGRY Y+KWWK VLV+L VW + +GL LF WWYH++DKT A+F VLV+V+ C VG
Sbjct 77 VAVPGRYFYVKWWKLVLVLLAVWAASAVIGLGLFSWWYHSIDKTPALFAVLVFVMVCVVG 136
Query 122 GLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
G++LA+V RPLI+AL++ V+SGPFA++AAAAPLYGYYYC R+ HCLVGV+PY
Sbjct 137 GVMLAMVEARPLISALAVAVLSGPFAALAAAAPLYGYYYCARVGHCLVGVVPY 189
>gi|118463500|ref|YP_883816.1| hypothetical protein MAV_4688 [Mycobacterium avium 104]
gi|254777125|ref|ZP_05218641.1| hypothetical protein MaviaA2_20999 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118164787|gb|ABK65684.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=187
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/113 (68%), Positives = 94/113 (84%), Gaps = 0/113 (0%)
Query 62 VTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVG 121
V VPGRY Y+KWWK VLV+L VW + VGL LF WWYH++DKT A+F VLV+VV C VG
Sbjct 75 VAVPGRYFYVKWWKLVLVLLAVWAASAVVGLGLFSWWYHSIDKTPALFAVLVFVVVCVVG 134
Query 122 GLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
G++LA+V RPLI+AL++ V+SGPFA++AAAAPLYGYYYC R+ HCLVGV+PY
Sbjct 135 GVMLAMVEARPLISALAVAVLSGPFAALAAAAPLYGYYYCARVGHCLVGVVPY 187
>gi|296168063|ref|ZP_06850129.1| hypothetical transmembrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896870|gb|EFG76498.1| hypothetical transmembrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=189
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/123 (65%), Positives = 95/123 (78%), Gaps = 0/123 (0%)
Query 52 SEPAATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVV 111
E A VTVPGRY YLKWWK +LV+LGVW A G L YWWYH+ D+TAA+F V
Sbjct 67 DESAIAPVQPVTVPGRYFYLKWWKLLLVLLGVWSAAAVAGFGLSYWWYHSADQTAALFAV 126
Query 112 LVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGV 171
LVYVVAC VGG++LA+ GRP+++ALSL VMS PFAS+AAAAP+ GYY+C R+ HCLVG+
Sbjct 127 LVYVVACAVGGVLLAMAEGRPVVSALSLAVMSAPFASLAAAAPVLGYYHCARVGHCLVGL 186
Query 172 IPY 174
IPY
Sbjct 187 IPY 189
>gi|333989087|ref|YP_004521701.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333485056|gb|AEF34448.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=181
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/173 (46%), Positives = 106/173 (62%), Gaps = 10/173 (5%)
Query 2 PDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHS 61
P FDTG H L+G+ + PG +P+ +P+G E A
Sbjct 19 PIFDTGPHPAPLPGLSGELEPQ----PGLEARPEPEPIGP------ESKAGPAPAKPPKP 68
Query 62 VTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTVG 121
V V G+Y +LKWW+F LV++GVWI A +GL LF WWY DKT AVFVV+VY C V
Sbjct 69 VVVEGQYRFLKWWQFALVLVGVWIPAAGIGLGLFSWWYALADKTPAVFVVVVYAAVCVVA 128
Query 122 GLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYCERMSHCLVGVIPY 174
GLI+A+V +PL++A++L +MS FAS AAAPLYG+Y+C+ + C+ G+IPY
Sbjct 129 GLIVAMVGEKPLLSAVALALMSAVFASAVAAAPLYGHYFCQHVDRCVGGIIPY 181
>gi|169631206|ref|YP_001704855.1| hypothetical protein MAB_4128c [Mycobacterium abscessus ATCC
19977]
gi|169243173|emb|CAM64201.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=263
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/163 (39%), Positives = 81/163 (50%), Gaps = 21/163 (12%)
Query 4 FDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATLAHSVT 63
FD G+ + A + RA TP P + +V VLG EPA V
Sbjct 90 FDVGSDRTGAIPAAVGRSRAE----AMTPDPY--------TGAVPVLGDEPA----KPVR 133
Query 64 VPGRYT--YLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTL---DKTAAVFVVLVYVVAC 118
VP LK W +L+++G WI A VGL L+ W+ TL D+ AV VL +V AC
Sbjct 134 VPAEREPALLKRWVLLLILVGTWIPAAAVGLLLYQNWFATLLPHDRIVAVEYVLAWVFAC 193
Query 119 TVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYGYYYC 161
+ L+LA+ RPLI AL+ V++ P SVAAA YGY C
Sbjct 194 VLIALLLAMFEPRPLIVALAFAVLTAPAISVAAAGVKYGYVAC 236
>gi|108797610|ref|YP_637807.1| hypothetical protein Mmcs_0630 [Mycobacterium sp. MCS]
gi|119866697|ref|YP_936649.1| hypothetical protein Mkms_0643 [Mycobacterium sp. KMS]
gi|108768029|gb|ABG06751.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692786|gb|ABL89859.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=180
Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/155 (41%), Positives = 85/155 (55%), Gaps = 17/155 (10%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATL-- 58
+P FDTG SQ A + P T + DP+ + E L EP +
Sbjct 18 LPTFDTGGFSQP----DPVTPLAARPEPTLTLDREPDPL------AYEALDFEPDSEPMV 67
Query 59 ---AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLD--KTAAVFVVLV 113
A V +PG Y +LK W F LV+ VW+ A VG L+YWW LD KT V+VVLV
Sbjct 68 VPPAQPVVLPGSYQFLKRWVFALVLSAVWVVAAAVGAGLYYWWVGDLDPDKTWPVYVVLV 127
Query 114 YVVACTVGGLILALVPGRPLITALSLGVMSGPFAS 148
Y++ CTV GLI+A+V +P++TAL++ +MS P AS
Sbjct 128 YLLGCTVAGLIVAMVARKPVVTALAIALMSAPPAS 162
>gi|126433234|ref|YP_001068925.1| hypothetical protein Mjls_0623 [Mycobacterium sp. JLS]
gi|126233034|gb|ABN96434.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=180
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/156 (40%), Positives = 85/156 (55%), Gaps = 17/156 (10%)
Query 1 VPDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDPVGVAPSASVEVLGSEPAATL-- 58
+P FDTG SQ A + P T + DP+ + E L EP +
Sbjct 18 LPTFDTGGFSQP----DPVTPLAARPEPTLTLDREPDPL------AYEALDFEPDSEPMV 67
Query 59 ---AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLD--KTAAVFVVLV 113
A + +PG Y +LK W F LV+ VW+ A VG L+YWW LD KT V+VVLV
Sbjct 68 VPPAQPIVLPGSYQFLKRWLFALVLSAVWVVAAAVGAGLYYWWVGDLDPDKTWPVYVVLV 127
Query 114 YVVACTVGGLILALVPGRPLITALSLGVMSGPFASV 149
Y++ CTV GLI+A+V +P++TAL++ +MS P AS
Sbjct 128 YLLGCTVAGLIVAMVARKPVVTALAIALMSAPPAST 163
>gi|120401808|ref|YP_951637.1| hypothetical protein Mvan_0793 [Mycobacterium vanbaalenii PYR-1]
gi|119954626|gb|ABM11631.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=129
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/127 (45%), Positives = 72/127 (57%), Gaps = 4/127 (3%)
Query 36 EDPVGVAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLF 95
ED + + A + L PA V VP + W+FVLVV G+WI A G L+
Sbjct 3 EDQIALDDPAYADELPRPPA----QPVVVPAAAQSVGRWRFVLVVAGMWIVAAAAGAGLY 58
Query 96 YWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPL 155
YWWYH+ DK VF VLV+VVAC VG L+ A+V RP + A ++ +MS P A+ AA L
Sbjct 59 YWWYHSPDKAVPVFAVLVFVVACIVGSLLTAMVQDRPGVAATAIAMMSAPLAAAVGAAVL 118
Query 156 YGYYYCE 162
YG Y E
Sbjct 119 YGAYVFE 125
>gi|145220725|ref|YP_001131403.1| hypothetical protein Mflv_0120 [Mycobacterium gilvum PYR-GCK]
gi|315442323|ref|YP_004075202.1| hypothetical protein Mspyr1_06630 [Mycobacterium sp. Spyr1]
gi|145213211|gb|ABP42615.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315260626|gb|ADT97367.1| hypothetical protein Mspyr1_06630 [Mycobacterium sp. Spyr1]
Length=128
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/85 (50%), Positives = 55/85 (65%), Gaps = 0/85 (0%)
Query 59 AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVAC 118
A + VP + W+FVLV G+WI A G L+YWW+H DK+ VF VLV+VVAC
Sbjct 21 AQPIVVPSAEQSVSRWRFVLVTAGMWIAAAAAGAGLYYWWFHGADKSLPVFAVLVFVVAC 80
Query 119 TVGGLILALVPGRPLITALSLGVMS 143
TVG L+ A+V RP + A+SL +MS
Sbjct 81 TVGSLLTAMVQERPGLAAMSLALMS 105
>gi|297560439|ref|YP_003679413.1| hypothetical protein Ndas_1476 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844887|gb|ADH66907.1| protein of unknown function DUF1212 [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=468
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/115 (34%), Positives = 56/115 (49%), Gaps = 14/115 (12%)
Query 41 VAPSASVEVLGSEPAATLAHSVTVPGRYTYLKWWKFVLV----VLGVWIGAGEVGLSLFY 96
+A SAS+ V G AT A TV G T + K + + G + A +G++L
Sbjct 162 IASSASLMVGGGLIVATAAFLATVMGDRTSVFLAKRGVAEFYQMAGAAVVAATIGVALL- 220
Query 97 WWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAA 151
W TLD L + G I+AL+PGRPL+++L G+ SG + S AA
Sbjct 221 WASTTLD--------LGLQAGAIITGNIMALLPGRPLVSSLQDGI-SGTYVSAAA 266
>gi|254444132|ref|ZP_05057608.1| hypothetical protein VDG1235_2371 [Verrucomicrobiae bacterium
DG1235]
gi|198258440|gb|EDY82748.1| hypothetical protein VDG1235_2371 [Verrucomicrobiae bacterium
DG1235]
Length=1015
Score = 36.2 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 35/119 (30%), Positives = 51/119 (43%), Gaps = 18/119 (15%)
Query 3 DF-DTGAHSQRFLSLAGQQDRAGKSW----PGSTPKPQEDPVGVAPSASVEVL-----GS 52
DF D A R G ++ + +W S+ P P G APS+ VE+L GS
Sbjct 101 DFKDVAAEEVREAFWTGARNGSSTTWLVTRGFSSTAPAPVPKGTAPSSEVELLGEGTIGS 160
Query 53 EPAATL---AHSVTVPGRYTYLKWWKFVLVVLGVWIGAGEVGLSLFYWWYHTLDKTAAV 108
P T+ +TV G Y + G W+ G++G+ Y WY DKT ++
Sbjct 161 NPLLTVKVPKEPITVSGVDGYGNSAVLTIGNFGYWV--GDLGVKGSYAWY---DKTNSI 214
>gi|296446458|ref|ZP_06888402.1| phosphate ABC transporter, inner membrane subunit PstC [Methylosinus
trichosporium OB3b]
gi|296256093|gb|EFH03176.1| phosphate ABC transporter, inner membrane subunit PstC [Methylosinus
trichosporium OB3b]
Length=343
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 41/72 (57%), Gaps = 12/72 (16%)
Query 92 LSLFYWWYHTLDKTAAVFVVLVYVVACTVGGLILALVPGR-PLITALSLGVMS----GPF 146
++LF +++H L ++AA+ V+L+ +GG+I +L+ G P I A LG ++ P
Sbjct 38 MALFDFFFHNLTRSAAILVLLI------LGGVIFSLIYGSLPAIRAFGLGFLTTESWNPV 91
Query 147 AS-VAAAAPLYG 157
A AP+YG
Sbjct 92 TEKFGAVAPIYG 103
>gi|239917383|ref|YP_002956941.1| carbon starvation protein, membrane protein [Micrococcus luteus
NCTC 2665]
gi|281414133|ref|ZP_06245875.1| carbon starvation protein, predicted membrane protein [Micrococcus
luteus NCTC 2665]
gi|239838590|gb|ACS30387.1| carbon starvation protein, predicted membrane protein [Micrococcus
luteus NCTC 2665]
Length=753
Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/97 (31%), Positives = 46/97 (48%), Gaps = 9/97 (9%)
Query 65 PGRYTYLKWWKFVL----VVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
PGR T + FVL ++ G W+ E G +LF TLD+T + V++Y V
Sbjct 247 PGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALF-----TLDRTTIAWAVIIYGFVAAV 301
Query 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG 157
+ L L P L T + +GV++G ++ P G
Sbjct 302 LPVWLLLAPRDYLSTFMKIGVIAGLALAIVVVQPRIG 338
>gi|319411751|emb|CBQ73794.1| conserved hypothetical Ustilaginaceae-specific protein [Sporisorium
reilianum SRZ2]
Length=586
Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 25/67 (38%), Positives = 32/67 (48%), Gaps = 12/67 (17%)
Query 2 PDFDTGAHSQRFLSLAGQQDRAGKSWPGSTPKPQEDP-VGVAPSASVEVLGSEPAATLAH 60
P +TG S+ S A SWP P+P+E P G+ PSA EV P AT +
Sbjct 213 PVLETGGTSRNPWSAA--------SWP---PRPEEPPYAGMQPSAQEEVAPHWPPATAHN 261
Query 61 SVTVPGR 67
+PGR
Sbjct 262 PSGIPGR 268
>gi|321258562|ref|XP_003194002.1| hypothetical protein CGB_D9230C [Cryptococcus gattii WM276]
gi|317460472|gb|ADV22215.1| hypothetical protein CNJ00550 [Cryptococcus gattii WM276]
Length=551
Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 16/58 (28%), Positives = 34/58 (59%), Gaps = 0/58 (0%)
Query 99 YHTLDKTAAVFVVLVYVVACTVGGLILALVPGRPLITALSLGVMSGPFASVAAAAPLY 156
Y+ + AVFV+ + +V+ VGG+ ++ + ++LG + GP++ + + AP+Y
Sbjct 429 YYLTGSSNAVFVLALSLVSGNVGGVTKRVLASASIFLGVALGNIVGPYSFLDSEAPVY 486
>gi|289704775|ref|ZP_06501196.1| carbon starvation protein [Micrococcus luteus SK58]
gi|289558491|gb|EFD51761.1| carbon starvation protein [Micrococcus luteus SK58]
Length=717
Score = 34.3 bits (77), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/97 (31%), Positives = 46/97 (48%), Gaps = 9/97 (9%)
Query 65 PGRYTYLKWWKFVL----VVLGVWIGAGEVGLSLFYWWYHTLDKTAAVFVVLVYVVACTV 120
PGR T + FVL ++ G W+ E G +LF TLD+T + V++Y V
Sbjct 211 PGRITEISVIGFVLLLAAIIGGGWVAGTEWGAALF-----TLDRTTIAWAVIIYGFVAAV 265
Query 121 GGLILALVPGRPLITALSLGVMSGPFASVAAAAPLYG 157
+ L L P L T + +GV++G ++ P G
Sbjct 266 LPVWLLLAPRDYLSTFMKIGVIAGLALAIVVVQPRIG 302
Lambda K H
0.322 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 142560794112
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40