BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0463
Length=97
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607604|ref|NP_214977.1| hypothetical protein Rv0463 [Mycoba... 185 2e-45
gi|294995968|ref|ZP_06801659.1| hypothetical protein Mtub2_16078... 158 3e-37
gi|15828282|ref|NP_302545.1| hypothetical protein ML2388 [Mycoba... 108 3e-22
gi|240169848|ref|ZP_04748507.1| hypothetical protein MkanA1_1107... 105 2e-21
gi|342859034|ref|ZP_08715688.1| hypothetical protein MCOL_09158 ... 96.3 1e-18
gi|254819792|ref|ZP_05224793.1| hypothetical protein MintA_07704... 93.2 1e-17
gi|118617749|ref|YP_906081.1| hypothetical protein MUL_2215 [Myc... 90.1 1e-16
gi|41410055|ref|NP_962891.1| hypothetical protein MAP3957 [Mycob... 67.8 6e-10
gi|296168065|ref|ZP_06850131.1| conserved hypothetical protein [... 61.6 3e-08
gi|108797612|ref|YP_637809.1| hypothetical protein Mmcs_0632 [My... 54.3 5e-06
gi|118467482|ref|YP_885307.1| hypothetical protein MSMEG_0904 [M... 52.4 3e-05
gi|120401810|ref|YP_951639.1| hypothetical protein Mvan_0795 [My... 45.4 0.003
gi|145220718|ref|YP_001131396.1| hypothetical protein Mflv_0113 ... 42.0 0.031
>gi|15607604|ref|NP_214977.1| hypothetical protein Rv0463 [Mycobacterium tuberculosis H37Rv]
gi|15839852|ref|NP_334889.1| hypothetical protein MT0479 [Mycobacterium tuberculosis CDC1551]
gi|31791642|ref|NP_854135.1| hypothetical protein Mb0472 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=97
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)
Query 1 MTRRASTDTPQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAA 60
MTRRASTDTPQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAA
Sbjct 1 MTRRASTDTPQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAA 60
Query 61 GGLRLRSRGKLAWSAFAFSLPIPPVVLTVAVLADIYL 97
GGLRLRSRGKLAWSAFAFSLPIPPVVLTVAVLADIYL
Sbjct 61 GGLRLRSRGKLAWSAFAFSLPIPPVVLTVAVLADIYL 97
>gi|294995968|ref|ZP_06801659.1| hypothetical protein Mtub2_16078 [Mycobacterium tuberculosis
210]
Length=84
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 14 MGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRGKLAW 73
MGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRGKLAW
Sbjct 1 MGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRGKLAW 60
Query 74 SAFAFSLPIPPVVLTVAVLADIYL 97
SAFAFSLPIPPVVLTVAVLADIYL
Sbjct 61 SAFAFSLPIPPVVLTVAVLADIYL 84
>gi|15828282|ref|NP_302545.1| hypothetical protein ML2388 [Mycobacterium leprae TN]
gi|221230759|ref|YP_002504175.1| hypothetical protein MLBr_02388 [Mycobacterium leprae Br4923]
gi|699254|gb|AAA63017.1| u1740k [Mycobacterium leprae]
gi|13093975|emb|CAC31904.1| possible membrane protein [Mycobacterium leprae]
gi|219933866|emb|CAR72486.1| possible membrane protein [Mycobacterium leprae Br4923]
Length=101
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/96 (58%), Positives = 67/96 (70%), Gaps = 0/96 (0%)
Query 2 TRRASTDTPQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAG 61
R DTP+I +GAIGGV TGY+LWL +S+G +TTVSQWS +VL+LS++ C
Sbjct 6 NRLIGNDTPEIAVGAIGGVATGYVLWLVVMSIGYNITTVSQWSLIVLILSMVSVFCSGMC 65
Query 62 GLRLRSRGKLAWSAFAFSLPIPPVVLTVAVLADIYL 97
G LR R K AW AF F LP+ PVVLT+AVLA IYL
Sbjct 66 GWWLRQRRKHAWGAFTFGLPVFPVVLTLAVLAKIYL 101
>gi|240169848|ref|ZP_04748507.1| hypothetical protein MkanA1_11072 [Mycobacterium kansasii ATCC
12478]
Length=91
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/87 (64%), Positives = 66/87 (76%), Gaps = 0/87 (0%)
Query 11 QIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRGK 70
+ ++G IGGV TGY+LWL AIS+G+ LTTVS WS VL+LS ++AVC GGL LR R
Sbjct 5 ETLLGGIGGVATGYVLWLVAISIGEDLTTVSSWSVAVLMLSGVLAVCAVLGGLLLRWRSN 64
Query 71 LAWSAFAFSLPIPPVVLTVAVLADIYL 97
W+AF F LPI PVVLT+AVLADIYL
Sbjct 65 HLWAAFVFGLPILPVVLTLAVLADIYL 91
>gi|342859034|ref|ZP_08715688.1| hypothetical protein MCOL_09158 [Mycobacterium colombiense CECT
3035]
gi|342133275|gb|EGT86478.1| hypothetical protein MCOL_09158 [Mycobacterium colombiense CECT
3035]
Length=92
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/91 (57%), Positives = 66/91 (73%), Gaps = 1/91 (1%)
Query 7 TDTPQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLR 66
T TPQ I+GA+GG+ GY+LWL AIS GD T QW+ +VLL SV++ A GLR R
Sbjct 3 TVTPQAIVGAVGGLAAGYVLWLLAISNGDN-ATAGQWAPLVLLGSVVLGAGAALWGLRQR 61
Query 67 SRGKLAWSAFAFSLPIPPVVLTVAVLADIYL 97
RGK AW+ FAF+LP+ PV+LT+A+L D+YL
Sbjct 62 RRGKQAWAVFAFALPVLPVILTLAILVDVYL 92
>gi|254819792|ref|ZP_05224793.1| hypothetical protein MintA_07704 [Mycobacterium intracellulare
ATCC 13950]
Length=93
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/91 (55%), Positives = 63/91 (70%), Gaps = 1/91 (1%)
Query 7 TDTPQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLR 66
T TPQ I GA+ G+ TGY++WL IS GD T QW +VLL SV++ + A G R
Sbjct 4 TVTPQTIAGAVAGLATGYVVWLLGISTGDN-ATAGQWGPLVLLASVVLGIGAAIWGAWQR 62
Query 67 SRGKLAWSAFAFSLPIPPVVLTVAVLADIYL 97
RGKL W+AFAF LP+ PVVLT+A+LAD+YL
Sbjct 63 RRGKLGWAAFAFGLPVLPVVLTLAILADVYL 93
>gi|118617749|ref|YP_906081.1| hypothetical protein MUL_2215 [Mycobacterium ulcerans Agy99]
gi|183980810|ref|YP_001849101.1| hypothetical protein MMAR_0786 [Mycobacterium marinum M]
gi|118569859|gb|ABL04610.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
gi|183174136|gb|ACC39246.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=91
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/87 (61%), Positives = 64/87 (74%), Gaps = 0/87 (0%)
Query 11 QIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRGK 70
+ ++G GGV GY+LWL AIS+GD LTTV QWS V+LLLS L+AV A GL +R R +
Sbjct 5 EAVLGGAGGVTAGYLLWLVAISIGDDLTTVGQWSLVILLLSGLLAVGAALVGLLMRWRNR 64
Query 71 LAWSAFAFSLPIPPVVLTVAVLADIYL 97
WSAF F LP+ PVVLT+AVLADIY
Sbjct 65 YGWSAFVFGLPVLPVVLTLAVLADIYF 91
>gi|41410055|ref|NP_962891.1| hypothetical protein MAP3957 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118467202|ref|YP_883814.1| hypothetical protein MAV_4686 [Mycobacterium avium 104]
gi|254777123|ref|ZP_05218639.1| hypothetical protein MaviaA2_20989 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398888|gb|AAS06507.1| hypothetical protein MAP_3957 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118168489|gb|ABK69386.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460301|gb|EGO39201.1| hypothetical protein MAPs_40970 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=93
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/91 (53%), Positives = 62/91 (69%), Gaps = 1/91 (1%)
Query 7 TDTPQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLR 66
T TPQ I A+GG+ TGY+LWL AIS GD TV QW +VL+ SV++ A G R
Sbjct 4 TLTPQTIAAALGGLATGYVLWLLAISNGDN-ATVGQWGPLVLVASVVLGGAAAVWGAWQR 62
Query 67 SRGKLAWSAFAFSLPIPPVVLTVAVLADIYL 97
RG +AFAF+LP+ PV+LT+A+LAD+YL
Sbjct 63 RRGSRPRAAFAFALPVLPVLLTLAILADVYL 93
>gi|296168065|ref|ZP_06850131.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896872|gb|EFG76500.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=90
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/88 (49%), Positives = 60/88 (69%), Gaps = 0/88 (0%)
Query 10 PQIIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRG 69
+++GA+GG+ GY+LWLAA S+ D V QW+ VLLLS+ +AVC LR R
Sbjct 3 SDVVLGAVGGLAAGYVLWLAAFSIVDDNAAVGQWAPTVLLLSLALAVCATTWASLLRRRR 62
Query 70 KLAWSAFAFSLPIPPVVLTVAVLADIYL 97
K AWS F F+L +PP++LT+AV A++YL
Sbjct 63 KYAWSGFGFALSLPPLLLTLAVFANVYL 90
>gi|108797612|ref|YP_637809.1| hypothetical protein Mmcs_0632 [Mycobacterium sp. MCS]
gi|119866699|ref|YP_936651.1| hypothetical protein Mkms_0645 [Mycobacterium sp. KMS]
gi|126433236|ref|YP_001068927.1| hypothetical protein Mjls_0625 [Mycobacterium sp. JLS]
gi|108768031|gb|ABG06753.1| putative membrane protein [Mycobacterium sp. MCS]
gi|119692788|gb|ABL89861.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126233036|gb|ABN96436.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=89
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/85 (38%), Positives = 46/85 (55%), Gaps = 0/85 (0%)
Query 13 IMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRGKLA 72
I+ +GG V G+ILWL AI++ + VS W VV LS +V G R R +
Sbjct 5 IVAGVGGFVIGHILWLIAITLATNTSDVSTWVLVVAALSFVVGAALGYLGWRRFQRKEHV 64
Query 73 WSAFAFSLPIPPVVLTVAVLADIYL 97
WS+F + L + PV+ ++ VL YL
Sbjct 65 WSSFVWGLAVSPVLFSIVVLGVTYL 89
>gi|118467482|ref|YP_885307.1| hypothetical protein MSMEG_0904 [Mycobacterium smegmatis str.
MC2 155]
gi|118168769|gb|ABK69665.1| probable conserved membrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=89
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (37%), Positives = 48/85 (57%), Gaps = 0/85 (0%)
Query 13 IMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRLRSRGKLA 72
I+ I G+V G+ILWLAAI++ + V++W VV LS + A G R +
Sbjct 5 IVSGIAGLVAGHILWLAAITLATDSSRVTRWVLVVAALSFVGGAAAAWVGWRRYQQRSRV 64
Query 73 WSAFAFSLPIPPVVLTVAVLADIYL 97
W+AF + LP+ PV+ ++ +L YL
Sbjct 65 WAAFLWCLPVSPVLFSLTLLGVTYL 89
>gi|120401810|ref|YP_951639.1| hypothetical protein Mvan_0795 [Mycobacterium vanbaalenii PYR-1]
gi|119954628|gb|ABM11633.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=92
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/89 (40%), Positives = 49/89 (56%), Gaps = 3/89 (3%)
Query 12 IIMGAIGGVVTGYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGG---LRLRSR 68
I + IGG+V G+ILWLA IS V W VV +S+++ + A G L+ + R
Sbjct 4 IWVAGIGGLVVGHILWLAGISAAIASANVPTWVLVVAGVSLILGLASALLGRRKLQRKDR 63
Query 69 GKLAWSAFAFSLPIPPVVLTVAVLADIYL 97
W+AF F L I PV+ ++AVL YL
Sbjct 64 KSEIWAAFLFGLSISPVLFSLAVLGVTYL 92
>gi|145220718|ref|YP_001131396.1| hypothetical protein Mflv_0113 [Mycobacterium gilvum PYR-GCK]
gi|315442330|ref|YP_004075209.1| hypothetical protein Mspyr1_06700 [Mycobacterium sp. Spyr1]
gi|145213204|gb|ABP42608.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315260633|gb|ADT97374.1| hypothetical protein Mspyr1_06700 [Mycobacterium sp. Spyr1]
Length=80
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/78 (40%), Positives = 42/78 (54%), Gaps = 3/78 (3%)
Query 23 GYILWLAAISVGDGLTTVSQWSRVVLLLSVLVAVCGAAGGLRL---RSRGKLAWSAFAFS 79
G++LWLA IS T +S W VV +S +V V A G RL + A +AF +
Sbjct 3 GHVLWLAGISFAISSTDISTWVLVVAAVSFVVGVSAALLGRRLWQRKDEKSEARAAFLWG 62
Query 80 LPIPPVVLTVAVLADIYL 97
L I PV+L++ VL YL
Sbjct 63 LSISPVLLSLIVLGVTYL 80
Lambda K H
0.326 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130655526400
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40