BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0465c Length=474 Score E Sequences producing significant alignments: (Bits) Value gi|15607606|ref|NP_214979.1| transcriptional regulatory protein ... 977 0.0 gi|289756539|ref|ZP_06515917.1| transcriptional regulatory prote... 973 0.0 gi|340625491|ref|YP_004743943.1| putative transcriptional regula... 971 0.0 gi|289446007|ref|ZP_06435751.1| transcriptional regulator [Mycob... 971 0.0 gi|121636380|ref|YP_976603.1| putative transcriptional regulator... 971 0.0 gi|289744162|ref|ZP_06503540.1| transcriptional regulator [Mycob... 969 0.0 gi|289573051|ref|ZP_06453278.1| transcriptional regulator [Mycob... 969 0.0 gi|31791644|ref|NP_854137.1| transcriptional regulatory protein ... 969 0.0 gi|289441846|ref|ZP_06431590.1| transcriptional regulator [Mycob... 967 0.0 gi|183980814|ref|YP_001849105.1| transcriptional regulatory prot... 918 0.0 gi|118619629|ref|YP_907961.1| transcriptional regulatory protein... 915 0.0 gi|240169850|ref|ZP_04748509.1| transcriptional regulatory prote... 913 0.0 gi|342859032|ref|ZP_08715686.1| DNA-binding protein [Mycobacteri... 909 0.0 gi|118465480|ref|YP_883812.1| DNA-binding protein [Mycobacterium... 904 0.0 gi|41410057|ref|NP_962893.1| hypothetical protein MAP3959c [Myco... 903 0.0 gi|336460426|gb|EGO39324.1| putative transcriptional regulator [... 902 0.0 gi|254819794|ref|ZP_05224795.1| DNA-binding protein [Mycobacteri... 899 0.0 gi|296168067|ref|ZP_06850133.1| DNA-binding protein [Mycobacteri... 893 0.0 gi|169631196|ref|YP_001704845.1| transcriptional regulatory prot... 846 0.0 gi|118468644|ref|YP_885309.1| DNA-binding protein [Mycobacterium... 841 0.0 gi|126433238|ref|YP_001068929.1| hypothetical protein Mjls_0627 ... 833 0.0 gi|108797614|ref|YP_637811.1| XRE family transcriptional regulat... 832 0.0 gi|333989095|ref|YP_004521709.1| transcriptional regulator [Myco... 823 0.0 gi|120401814|ref|YP_951643.1| hypothetical protein Mvan_0799 [My... 807 0.0 gi|145220714|ref|YP_001131392.1| hypothetical protein Mflv_0109 ... 800 0.0 gi|226305059|ref|YP_002765017.1| Xre family DNA-binding protein ... 766 0.0 gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus j... 764 0.0 gi|289760582|ref|ZP_06519960.1| conserved hypothetical protein [... 764 0.0 gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein ... 763 0.0 gi|229490209|ref|ZP_04384056.1| DNA-binding protein [Rhodococcus... 761 0.0 gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhod... 760 0.0 gi|333918277|ref|YP_004491858.1| DNA-binding protein [Amycolicic... 749 0.0 gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocar... 734 0.0 gi|296141343|ref|YP_003648586.1| XRE family transcriptional regu... 697 0.0 gi|262200762|ref|YP_003271970.1| hypothetical protein Gbro_0761 ... 692 0.0 gi|343925742|ref|ZP_08765257.1| putative Xre family DNA-binding ... 689 0.0 gi|317508458|ref|ZP_07966127.1| hypothetical protein HMPREF9336_... 655 0.0 gi|296394319|ref|YP_003659203.1| XRE family transcriptional regu... 655 0.0 gi|326383144|ref|ZP_08204833.1| hypothetical protein SCNU_09406 ... 652 0.0 gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacte... 588 6e-166 gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [... 578 8e-163 gi|289748952|ref|ZP_06508330.1| conserved hypothetical protein [... 572 5e-161 gi|68537028|ref|YP_251733.1| putative transcriptional regulator ... 569 5e-160 gi|337289904|ref|YP_004628925.1| HTH 3 family transcription regu... 553 2e-155 gi|172041518|ref|YP_001801232.1| HTH family transcriptional regu... 548 7e-154 gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional re... 548 1e-153 gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regu... 546 3e-153 gi|25026941|ref|NP_736995.1| putative transcription regulator [C... 542 5e-152 gi|227832086|ref|YP_002833793.1| putative transcriptional regula... 540 2e-151 gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [... 538 7e-151 >gi|15607606|ref|NP_214979.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839854|ref|NP_334891.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|148660231|ref|YP_001281754.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] 46 more sequence titles Length=474 Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/474 (99%), Positives = 474/474 (100%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|289756539|ref|ZP_06515917.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995970|ref|ZP_06801661.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|298523942|ref|ZP_07011351.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|289712103|gb|EFD76115.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493736|gb|EFI29030.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|326902291|gb|EGE49224.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|339293515|gb|AEJ45626.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CCDC5079] gi|339297156|gb|AEJ49266.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CCDC5180] Length=474 Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/474 (99%), Positives = 473/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|340625491|ref|YP_004743943.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340003681|emb|CCC42804.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] Length=474 Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/474 (99%), Positives = 472/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLH LDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|289446007|ref|ZP_06435751.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289418965|gb|EFD16166.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length=474 Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/474 (99%), Positives = 472/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVF MAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFTMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|121636380|ref|YP_976603.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988852|ref|YP_002643539.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121492027|emb|CAL70490.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771965|dbj|BAH24771.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341600396|emb|CCC63066.1| probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=474 Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/474 (99%), Positives = 473/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYL+QIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|289744162|ref|ZP_06503540.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289684690|gb|EFD52178.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] Length=474 Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/474 (99%), Positives = 472/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPAT TLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATITLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|289573051|ref|ZP_06453278.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|339630534|ref|YP_004722176.1| transcriptional regulator [Mycobacterium africanum GM041182] gi|289537482|gb|EFD42060.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|339329890|emb|CCC25540.1| putative transcriptional regulatory protein [Mycobacterium africanum GM041182] Length=474 Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/474 (99%), Positives = 472/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYL+QIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRL AELREVTLDRDLDIAIDPHEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLAAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|31791644|ref|NP_854137.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|31617230|emb|CAD93337.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] Length=474 Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/474 (99%), Positives = 473/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYL+QIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFV+VDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVQVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|289441846|ref|ZP_06431590.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289568383|ref|ZP_06448610.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289752496|ref|ZP_06511874.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289414765|gb|EFD12005.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289542136|gb|EFD45785.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289693083|gb|EFD60512.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length=474 Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/474 (99%), Positives = 472/474 (99%), Gaps = 0/474 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAID HEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 +LAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 121 RLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL Sbjct 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL 474 >gi|183980814|ref|YP_001849105.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174140|gb|ACC39250.1| transcriptional regulatory protein [Mycobacterium marinum M] Length=474 Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/473 (94%), Positives = 457/473 (97%), Gaps = 0/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLRNERGFSQAALAQ+LEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTFVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRLVAELREVT+DRDLDI++DP EVAEMVSAHP LA A+VNLHRRYRITTA Sbjct 61 ATFFSSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPSLARAMVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEER+SDGSG GSITMPHEEVRDYFYQRQNYLH LD AAEDLT QMR+HHGDL Sbjct 121 QLAAATEERYSDGSGTGSITMPHEEVRDYFYQRQNYLHELDAAAEDLTIQMRLHHGDLRS 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRI +RIDLGDTVLHR+DPAT TLEIS+HL+ GQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRITRRIDLGDTVLHRFDPATKTLEISNHLASGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTS ESRTLARLGLANYFAAA VLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSDESRTLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+F+RVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFIRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 DLSGDPN AATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 DLSGDPNIAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 >gi|118619629|ref|YP_907961.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571739|gb|ABL06490.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length=474 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/473 (94%), Positives = 456/473 (97%), Gaps = 0/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLRNERGFSQAALAQ+LEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTFVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRLVAELREVT+DRDLDI++DP EVAEMVSAHP LA A+VNLHRRYRITTA Sbjct 61 ATFFSSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPSLARAMVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEER+SDGSG GSITMPHEEVRDYFYQRQNYLH LD AAEDLT QMR+HHGDL Sbjct 121 QLAAATEERYSDGSGTGSITMPHEEVRDYFYQRQNYLHELDAAAEDLTIQMRLHHGDLRS 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRI +RIDLGDTVLHR DPAT TLEIS+HL+ GQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVRITRRIDLGDTVLHRLDPATMTLEISNHLASGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLIDAMVTDGKFTS ESRTLARLGLANYFAAA VLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDAMVTDGKFTSDESRTLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+F+RVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFIRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 DLSGDPN AATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 DLSGDPNIAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 >gi|240169850|ref|ZP_04748509.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=474 Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/473 (93%), Positives = 453/473 (96%), Gaps = 0/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLR+ERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTFVGSRVRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDI +DP EVAEMV AHP LA A+VNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVGAHPALARAMVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSG GSITMPHEEVRDYFYQRQNYLH LDTAAEDLT QMRMHHGDL Sbjct 121 QLAAATEERFSDGSGTGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTVQMRMHHGDLGS 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGV INKRIDLGD VLHRYDPA+ TLEIS+HL+PGQQ+FKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVHINKRIDLGDGVLHRYDPASKTLEISNHLAPGQQLFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID +V +GKFTS ES TLARLGLANYFAAA VLPYRQFHDVAENFRYDVERLSAFYSV Sbjct 241 DLIDTLVEEGKFTSDESHTLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+F+RVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFIRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 DLSGDPNT ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 DLSGDPNTTATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 >gi|342859032|ref|ZP_08715686.1| DNA-binding protein [Mycobacterium colombiense CECT 3035] gi|342133273|gb|EGT86476.1| DNA-binding protein [Mycobacterium colombiense CECT 3035] Length=474 Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/473 (93%), Positives = 454/473 (96%), Gaps = 0/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRI+EVFGVD Sbjct 1 MSKTFVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRISEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRLVAELREVT+DRDLDI +DP EVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSG GSITMPHEEVRDYFYQRQNYLH LDTAAEDLT +MR+HHGDLAR Sbjct 121 QLAAATEERFSDGSGSGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTIKMRLHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGV IN+RIDLGDTVLHRYDP T TLE S+HLS GQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVHINRRIDLGDTVLHRYDPTTKTLEFSNHLSLGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID +V +GKFTS ES TLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLS+FYS+ Sbjct 241 DLIDTLVEEGKFTSDESHTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSSFYSI 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 D+SG+P T ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLV Q Sbjct 421 DVSGEPGTVATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVTQ 473 >gi|118465480|ref|YP_883812.1| DNA-binding protein [Mycobacterium avium 104] gi|254777121|ref|ZP_05218637.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118166767|gb|ABK67664.1| DNA-binding protein [Mycobacterium avium 104] Length=474 Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/473 (92%), Positives = 452/473 (96%), Gaps = 0/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLR+ERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTFVGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRLVAELREVT+DRDLDI +DP EVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERF DGSG GSITMPHEEVRDYFYQRQNYLH LDTAAEDLT +MR+HHGDLAR Sbjct 121 QLAAATEERFFDGSGTGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTIKMRLHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGV IN+RIDLGDTVLHRYDP T TLEIS+HLS GQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVHINRRIDLGDTVLHRYDPETKTLEISNHLSWGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID++V GKFTS ES LARLGLANYFAAA VLPYRQFHDVAENFRYDVERLS+FYSV Sbjct 241 DLIDSLVAQGKFTSEESHKLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSSFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+F+RVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFIRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 D+SG P T ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 DVSGGPGTVATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 >gi|41410057|ref|NP_962893.1| hypothetical protein MAP3959c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398890|gb|AAS06509.1| hypothetical protein MAP_3959c [Mycobacterium avium subsp. paratuberculosis K-10] Length=506 Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/473 (93%), Positives = 452/473 (96%), Gaps = 0/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 VSKT+VGSRVRQLR+ERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 33 VSKTFVGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 92 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRLVAELREVT+DRDLDI +DP EVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 93 ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHPGLARAVVNLHRRYRITTA 152 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERF DGSG GSITMPHEEVRDYFYQRQNYLH LDTAAEDLT +MR+HHGDLAR Sbjct 153 QLAAATEERFFDGSGTGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTIKMRLHHGDLAR 212 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGV IN+RIDLGDTVLHRYDP T TLEIS+HLS GQQVFKMAAELAYLEFG Sbjct 213 ELTRRLTEVHGVHINRRIDLGDTVLHRYDPETKTLEISNHLSWGQQVFKMAAELAYLEFG 272 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID++V GKFTS ES LARLGLANYFAAA VLPYRQFHDVAENFRYDVERLS+FYSV Sbjct 273 DLIDSLVAQGKFTSEESHKLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSSFYSV 332 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+F+RVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 333 SYETIAHRLSTLQRPSMRGVPFSFIRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 392 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 393 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 452 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 D+SG P T ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 453 DVSGGPGTVATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 505 >gi|336460426|gb|EGO39324.1| putative transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=474 Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/473 (92%), Positives = 451/473 (96%), Gaps = 0/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLR+ERGFSQAALA MLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTFVGSRVRQLRHERGFSQAALAHMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRLVAELREVT+DRDLDI +DP EVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFSSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERF DGSG GSITMPHEEVRDYFYQRQNYLH LDTAAEDLT +MR+HHGDLAR Sbjct 121 QLAAATEERFFDGSGTGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTIKMRLHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGV IN+RIDLGDTVLHRYDP T TLEIS+HLS GQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVHINRRIDLGDTVLHRYDPETKTLEISNHLSWGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID++V GKFTS ES LARLGLANYFAAA VLPYRQFHDVAENFRYDVERLS+FYSV Sbjct 241 DLIDSLVAQGKFTSEESHKLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSSFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+F+RVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFIRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 D+SG P T ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 DVSGGPGTVATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 >gi|254819794|ref|ZP_05224795.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length=471 Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/473 (92%), Positives = 452/473 (96%), Gaps = 3/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTFVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRLVAELREVTLDRDLDI +DP EVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 61 ATFFSSQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVSAHPGLARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERFSDGSG GSITMPHEEVRDYFYQRQNYLH LDTAAE+LT +MR+HHGDLAR Sbjct 121 QLAAATEERFSDGSGSGSITMPHEEVRDYFYQRQNYLHELDTAAEELTIKMRLHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGV IN+RIDLGDTVLHRYDPAT TLEIS+HLS GQQVFKMAAELAYLEFG Sbjct 181 ELTRRLTEVHGVHINRRIDLGDTVLHRYDPATKTLEISNHLSLGQQVFKMAAELAYLEFG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID +V GKFTS ES TLARLGLANYFAAA VLPYRQFHDVAENFRYDVERLS+FYS+ Sbjct 241 DLIDDLVAQGKFTSDESHTLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSSFYSI 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLST+QRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTMQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 DLSG+ +TPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLV Q Sbjct 421 DLSGE---ISTPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVTQ 470 >gi|296168067|ref|ZP_06850133.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896874|gb|EFG76502.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=471 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/473 (92%), Positives = 449/473 (95%), Gaps = 3/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTFVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVT+DRDLDI +DP EVAE+V +HP LA AVVNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTMDRDLDIDVDPGEVAELVGSHPALARAVVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEERF+DGSG GSITMPHEEVRDYFYQRQNYLH LDTAAEDLT QMR+HHGDLAR Sbjct 121 QLAAATEERFTDGSGSGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTIQMRLHHGDLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 EL RRLTEVHGV IN+RIDLGDTVLHRYD T TLEIS+HLS GQQVFKMAAELAYLE+G Sbjct 181 ELNRRLTEVHGVHINRRIDLGDTVLHRYDRQTKTLEISNHLSLGQQVFKMAAELAYLEYG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID +V +GKFTS ES TLARLGLANYFAAA VLPYRQFHDVAENFRYDVERLS+FYSV Sbjct 241 DLIDTLVEEGKFTSDESHTLARLGLANYFAAAAVLPYRQFHDVAENFRYDVERLSSFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 ANPGKILVQIAQMPDGRNY+WVARTVE RAARYGQPGKTFAIGLGCELRHAHRLVYSEGL Sbjct 361 ANPGKILVQIAQMPDGRNYMWVARTVERRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 DLSGD ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 DLSGD---IATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 470 >gi|169631196|ref|YP_001704845.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC 19977] gi|169243163|emb|CAM64191.1| Probable transcriptional regulatory protein [Mycobacterium abscessus] Length=476 Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/473 (86%), Positives = 438/473 (93%), Gaps = 2/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVG R+RQLR+ERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MSKTYVGGRLRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDD+RL+AELREV D+DLDI +DP E+A++V+ HP LA A+VNLHRRYRITT Sbjct 61 ATFFSSQDDSRLIAELREVVQDKDLDIDVDPAEIADVVAGHPALARAMVNLHRRYRITTT 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATE+R++DGSG GSITMPHEEVRDYFYQR NYLH LDTAAEDLT +MRMH DLAR Sbjct 121 QLAAATEDRYTDGSGSGSITMPHEEVRDYFYQRHNYLHELDTAAEDLTVRMRMHRADLAR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+ RLTEVHGV+I +RIDLGD+VLH+YDPA+ TLEIS+HLS GQQVFK+AAELAYLE+G Sbjct 181 EIADRLTEVHGVQIARRIDLGDSVLHKYDPASKTLEISNHLSGGQQVFKLAAELAYLEYG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLID MV DGKFTS ESR LARLGLANYFAAATVLPYRQFH VAE+F+YD+ERLSAFYSV Sbjct 241 DLIDTMVDDGKFTSEESRKLARLGLANYFAAATVLPYRQFHGVAEDFQYDIERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYET+ HRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETVCHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 NPGKILVQ+AQMPDGRNYLWVARTVE RA+RYGQPGKTFAIGLGCELRHAHRLVYS+GL Sbjct 361 GNPGKILVQVAQMPDGRNYLWVARTVERRASRYGQPGKTFAIGLGCELRHAHRLVYSQGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 DLS + A TPIG GCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLV Q Sbjct 421 DLSSE--GATTPIGVGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVLQ 471 >gi|118468644|ref|YP_885309.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118169931|gb|ABK70827.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length=478 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/473 (86%), Positives = 441/473 (94%), Gaps = 4/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 + KT+VGSRVRQLR+ERGFSQAALAQML+ISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MPKTFVGSRVRQLRSERGFSQAALAQMLDISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA-IDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ QDDTRLVAELREVTLDRDL + +D EVA+MV++HP LA A+VNLHRRYR+ T Sbjct 61 ATFFSPQDDTRLVAELREVTLDRDLGASDVDLTEVADMVASHPKLARAMVNLHRRYRLAT 120 Query 120 AQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLA 179 QLAAATE+R+SDGSG G+ITMPHEEVRDYFY+RQNYLH LDTAAEDLTA+MRMH GDLA Sbjct 121 TQLAAATEDRYSDGSGSGAITMPHEEVRDYFYERQNYLHELDTAAEDLTARMRMHSGDLA 180 Query 180 RELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEF 239 ELT RLT VHGVR+ +RID+G+TVLHRYDPAT TLE+S+H+S GQQVFKMAAELAYLEF Sbjct 181 AELTNRLTSVHGVRVVRRIDMGETVLHRYDPATKTLEMSNHISRGQQVFKMAAELAYLEF 240 Query 240 GDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYS 299 GDLID +V +G+FTS ESRTLARLGLANYFAAATVLPYRQFHDVAENFRYD+ERLSAFY Sbjct 241 GDLIDKLVDEGRFTSDESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDIERLSAFYQ 300 Query 300 VSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYET 359 VSYETI HRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYET Sbjct 301 VSYETIGHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYET 360 Query 360 FANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEG 419 FA PGKILVQIAQMPDGR+Y+WVARTVE RA RYGQPGKTFAIGLGCELRHAHRLVYSEG Sbjct 361 FAYPGKILVQIAQMPDGRHYMWVARTVERRAHRYGQPGKTFAIGLGCELRHAHRLVYSEG 420 Query 420 LDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 LDLSG+ +TPIGAGCRVCERDNCPQRAFPALG+ALDLDEHRSTVSPYLV+ Sbjct 421 LDLSGN---VSTPIGAGCRVCERDNCPQRAFPALGKALDLDEHRSTVSPYLVR 470 >gi|126433238|ref|YP_001068929.1| hypothetical protein Mjls_0627 [Mycobacterium sp. JLS] gi|126233038|gb|ABN96438.1| protein of unknown function DUF955 [Mycobacterium sp. JLS] Length=475 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/477 (86%), Positives = 441/477 (93%), Gaps = 7/477 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KT+VGSRVRQLRNERG+SQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MAKTFVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVT+DR+L + +D E+A+MV+AHP LA A+VNLHRRYR+TT Sbjct 61 ATFFASQDDTRLVAELREVTMDRELGVEVDVSEIADMVAAHPTLARAMVNLHRRYRLTTT 120 Query 121 QLAAATEERFSDGSGRGSIT----MPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHG 176 QLAAATE+R+SDG+G S + MPHEEVRDYFYQRQNYLH LD+AAEDLT +MRMH G Sbjct 121 QLAAATEDRYSDGTGSSSGSGSISMPHEEVRDYFYQRQNYLHELDSAAEDLTVRMRMHRG 180 Query 177 DLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAY 236 DLA EL+ RL+ VHGV I +RIDLG+TVLHR++P T TLE+S+HLS GQQVFKMAAELAY Sbjct 181 DLAGELSNRLSTVHGVHIVRRIDLGETVLHRFEPGTKTLEMSTHLSVGQQVFKMAAELAY 240 Query 237 LEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA 296 LEFGDLID MV +G FTS ESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA Sbjct 241 LEFGDLIDKMVDEGMFTSDESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA 300 Query 297 FYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV 356 FY VSYETI HRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV Sbjct 301 FYQVSYETIGHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV 360 Query 357 YETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVY 416 YETFANPGKILVQIAQMPDGRNY+WVARTVE RA+RYGQPGKTFAIGLGCELRHAHRLVY Sbjct 361 YETFANPGKILVQIAQMPDGRNYMWVARTVERRASRYGQPGKTFAIGLGCELRHAHRLVY 420 Query 417 SEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 SEGLDLSG+ ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 SEGLDLSGE---NATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 474 >gi|108797614|ref|YP_637811.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866701|ref|YP_936653.1| hypothetical protein Mkms_0647 [Mycobacterium sp. KMS] gi|108768033|gb|ABG06755.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692790|gb|ABL89863.1| protein of unknown function DUF955 [Mycobacterium sp. KMS] Length=475 Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/477 (86%), Positives = 440/477 (93%), Gaps = 7/477 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KT+VGSRVRQLRNERG+SQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MAKTFVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREV +DR+L + +D E+A+MV+AHP LA A+VNLHRRYR+TT Sbjct 61 ATFFASQDDTRLVAELREVAMDRELGVEVDVSEIADMVAAHPTLARAMVNLHRRYRLTTT 120 Query 121 QLAAATEERFSDGSGRGSIT----MPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHG 176 QLAAATE+R+SDG+G S + MPHEEVRDYFYQRQNYLH LD+AAEDLT +MRMH G Sbjct 121 QLAAATEDRYSDGTGSSSGSGSISMPHEEVRDYFYQRQNYLHELDSAAEDLTVRMRMHRG 180 Query 177 DLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAY 236 DLA EL+ RL+ VHGV I +RIDLG+TVLHR++P T TLE+S+HLS GQQVFKMAAELAY Sbjct 181 DLAGELSNRLSTVHGVHIVRRIDLGETVLHRFEPGTKTLEMSTHLSVGQQVFKMAAELAY 240 Query 237 LEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA 296 LEFGDLID MV +G FTS ESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA Sbjct 241 LEFGDLIDKMVDEGMFTSDESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA 300 Query 297 FYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV 356 FY VSYETI HRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV Sbjct 301 FYQVSYETIGHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV 360 Query 357 YETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVY 416 YETFANPGKILVQIAQMPDGRNY+WVARTVE RA+RYGQPGKTFAIGLGCELRHAHRLVY Sbjct 361 YETFANPGKILVQIAQMPDGRNYMWVARTVERRASRYGQPGKTFAIGLGCELRHAHRLVY 420 Query 417 SEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 SEGLDLSG+ ATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ Sbjct 421 SEGLDLSGE---NATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 474 >gi|333989095|ref|YP_004521709.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333485063|gb|AEF34455.1| transcriptional regulatory protein [Mycobacterium sp. JDM601] Length=472 Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/473 (85%), Positives = 430/473 (91%), Gaps = 3/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KTYVG+RVRQLR+ERGFSQAALAQ+LEISPSYLNQIE DVRPLTVAVLLRITEVFGVD Sbjct 1 MAKTYVGARVRQLRSERGFSQAALAQLLEISPSYLNQIERDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVT+DRDLDI +D EVAE+VS HP LA A+VNLHRRYRITTA Sbjct 61 ATFFASQDDTRLVAELREVTMDRDLDIDVDLTEVAELVSVHPKLARAMVNLHRRYRITTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATEER++DGSG G+ITMPHEEVRDYFYQRQNYLH LDTAAE+L +MR H G+LA Sbjct 121 QLAAATEERYTDGSGTGAITMPHEEVRDYFYQRQNYLHELDTAAEELATRMRRHQGELAV 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 EL RLTEVHGV IN+RIDLG+TVLHRYD T TL++ HLS GQ+VFKMAAELAYLEF Sbjct 181 ELANRLTEVHGVHINRRIDLGETVLHRYDAQTKTLDMGHHLSWGQRVFKMAAELAYLEFD 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DLI AMV +GKFTS +SRTLARLGLANYFAAA VLPY QFHD AE FRYD+ERLSAFY V Sbjct 241 DLICAMVEEGKFTSKDSRTLARLGLANYFAAAIVLPYGQFHDSAETFRYDIERLSAFYRV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETIAHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 NPGKI VQIA+MPDGR YLWVARTVE RA+R+GQP KTFAIGLGCELR AHRLVYSEGL Sbjct 361 GNPGKIGVQIAEMPDGRKYLWVARTVERRASRWGQPDKTFAIGLGCELRQAHRLVYSEGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 DL+GD ATPIGAGCRVCERDNCPQRAFPALGR LDL+EHRSTVSPYLVKQ Sbjct 421 DLNGD---NATPIGAGCRVCERDNCPQRAFPALGRDLDLNEHRSTVSPYLVKQ 470 >gi|120401814|ref|YP_951643.1| hypothetical protein Mvan_0799 [Mycobacterium vanbaalenii PYR-1] gi|119954632|gb|ABM11637.1| protein of unknown function DUF955 [Mycobacterium vanbaalenii PYR-1] Length=475 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/475 (82%), Positives = 430/475 (91%), Gaps = 3/475 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KT+VG+R+RQLR+ERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MAKTFVGARIRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRL+AELREV +DRDLD+ +DP EVA+MV +HP LA A+VNLHRRY++TT Sbjct 61 ATFFASQDDTRLIAELREVLMDRDLDVDVDPAEVADMVGSHPALARAMVNLHRRYQLTTT 120 Query 121 QLAAATEERFSDGSGRGS--ITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDL 178 QLAAATE+RF+ GSG GS ITMPHEEVRDYFYQRQNYLH LDTAAE LTA MR+H GDL Sbjct 121 QLAAATEDRFNVGSGGGSGAITMPHEEVRDYFYQRQNYLHDLDTAAEALTADMRVHRGDL 180 Query 179 ARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLE 238 A +L+ RL VHGV + + +DLG+ VLHRYDPAT LE+ +HLS GQ VF+MAAELAYLE Sbjct 181 AGDLSDRLRFVHGVTVIRSVDLGEGVLHRYDPATRRLEVGAHLSSGQTVFRMAAELAYLE 240 Query 239 FGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFY 298 G+LID +V +GKFTS ESR LAR+GLANYFAAA VLPY QFH+VAE FRYD+ERLSA+Y Sbjct 241 CGELIDKLVDEGKFTSEESRKLARMGLANYFAAAAVLPYGQFHEVAEKFRYDIERLSAYY 300 Query 299 SVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYE 358 SVSYET HRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYE Sbjct 301 SVSYETTCHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYE 360 Query 359 TFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSE 418 TFANPGKI VQIA+MPDGR Y+WVARTVE RA+RYGQPGKTFAIGLGCELRHA RLVYSE Sbjct 361 TFANPGKISVQIAEMPDGRAYMWVARTVERRASRYGQPGKTFAIGLGCELRHAQRLVYSE 420 Query 419 GLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 GL ++GDPN ATPIGAGCRVCERDNCPQRAFPALGRALD+DEHRSTVSPYLV+Q Sbjct 421 GL-VTGDPNVPATPIGAGCRVCERDNCPQRAFPALGRALDIDEHRSTVSPYLVRQ 474 >gi|145220714|ref|YP_001131392.1| hypothetical protein Mflv_0109 [Mycobacterium gilvum PYR-GCK] gi|315442334|ref|YP_004075213.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|145213200|gb|ABP42604.1| protein of unknown function DUF955 [Mycobacterium gilvum PYR-GCK] gi|315260637|gb|ADT97378.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length=482 Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/481 (81%), Positives = 428/481 (89%), Gaps = 8/481 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KT+VG+RVRQLR+ERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 1 MAKTFVGARVRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRL+AELREVT+DRDLD+ +DP E+AE+V++HP LA A+VNLHRRY++TT Sbjct 61 ATFFASQDDTRLIAELREVTMDRDLDVEVDPAEIAEVVASHPSLARAMVNLHRRYQLTTT 120 Query 121 QLAAATEERFSDGSGRGSIT--------MPHEEVRDYFYQRQNYLHALDTAAEDLTAQMR 172 QLAAATE+RF+ + MPHEEVRDYFYQRQNYLH LD AAE+LTA MR Sbjct 121 QLAAATEDRFNTAGLSSAGGGSGSGAISMPHEEVRDYFYQRQNYLHELDLAAENLTADMR 180 Query 173 MHHGDLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAA 232 +H G+LA +L RL VHGV I +RIDLG+ V+HRYDP T LE+S+ LS GQ+VF+MAA Sbjct 181 VHRGELAGDLADRLRFVHGVTIIRRIDLGEVVMHRYDPDTRRLEMSAQLSAGQRVFRMAA 240 Query 233 ELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVE 292 ELAYLE GDLI+ +V +G FTS ESR LAR+GLANYFAAATVLPY QFH+VAE FRYDVE Sbjct 241 ELAYLECGDLIEKLVAEGHFTSEESRKLARMGLANYFAAATVLPYGQFHEVAEKFRYDVE 300 Query 293 RLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCP 352 RLSA+YSVSYETI HRLSTLQRPSMRGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCP Sbjct 301 RLSAYYSVSYETICHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCP 360 Query 353 LWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAH 412 LWNVYETFANPGKI VQIA+MPDGR Y+WVARTVE RAARYGQPGKTFAIGLGCELRHA Sbjct 361 LWNVYETFANPGKIGVQIAEMPDGRAYMWVARTVERRAARYGQPGKTFAIGLGCELRHAQ 420 Query 413 RLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 RLVYSEGLDLSGDP+ ATPIGAGCRVCERDNCPQRAFPALGRALD+DEHRSTVSPYLV+ Sbjct 421 RLVYSEGLDLSGDPSVRATPIGAGCRVCERDNCPQRAFPALGRALDIDEHRSTVSPYLVR 480 Query 473 Q 473 Q Sbjct 481 Q 481 >gi|226305059|ref|YP_002765017.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184174|dbj|BAH32278.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length=470 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/472 (77%), Positives = 412/472 (88%), Gaps = 2/472 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VG R+RQLR ERG SQA+LA+ LEIS SYLNQIEHDVRPLTV VLLRI+EVFGVD Sbjct 1 MSKTFVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 TFF+ QDDTRL+AE+REV LD+++ I D HE+AEMVS HPGLA A+VN+HRR+R TTA Sbjct 61 TTFFSPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHPGLAKAMVNMHRRFRNTTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATE+RFSDGSG GSITMPHEEVRDYFYQRQNY+H LDTAAE+LTA+MR H GD+A Sbjct 121 QLAAATEDRFSDGSGSGSITMPHEEVRDYFYQRQNYIHDLDTAAEELTARMRFHRGDVAG 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+ RRL VHGV+I +R+DLG+ +LHRYDP T LEIS+ LS GQQVFK A ELAYLE G Sbjct 181 EIARRLETVHGVQIVRRVDLGENILHRYDPDTRVLEISARLSGGQQVFKFATELAYLEHG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DL+D++V +G FTS S +LARLGLANYFAAATVLPY QFHDVAE+FRYD+ER+SAFYS Sbjct 241 DLLDSLVAEGNFTSEASVSLARLGLANYFAAATVLPYSQFHDVAEDFRYDIERMSAFYSA 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETI HRLSTLQRP +RGVPF FVRVDRAGNMSKRQSATGFHFS+SGGTCPLWNVYETF Sbjct 301 SYETICHRLSTLQRPKLRGVPFMFVRVDRAGNMSKRQSATGFHFSTSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 + PGKI+ QIAQMPDGR YLWVARTVE RAARYGQP K FAIGLGCE+RHAHRLVYS+GL Sbjct 361 SYPGKIMPQIAQMPDGRRYLWVARTVERRAARYGQPAKIFAIGLGCEIRHAHRLVYSDGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 DL D + TPIG+GCRVCER NCPQRAFP LG+ LD+ EHRS++SPY+++ Sbjct 421 DL--DESNPGTPIGSGCRVCERLNCPQRAFPPLGKDLDISEHRSSISPYVIR 470 >gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1] gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1] Length=470 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/472 (77%), Positives = 410/472 (87%), Gaps = 2/472 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VG+R+RQLR ERG SQAALA+ LEIS SYLNQIEHDVRPLTV VLLRI+EVFGVD Sbjct 1 MSKTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 TFF+SQDDTRL+AE+REV LD+++ I D E+AEMV++HPGLA A+VN+HRR+R TTA Sbjct 61 TTFFSSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHPGLAKAMVNMHRRFRNTTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLA ATE+R+SDGSG GSITMPHEEVRDYFYQRQNYLH LDTAAE+LTA+MR H GD+ Sbjct 121 QLALATEDRYSDGSGSGSITMPHEEVRDYFYQRQNYLHELDTAAEELTARMRFHRGDVGG 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+ RRL VH V+I KRIDLG+ VLHRYDP + LEIS HLS GQQVFK A ELA+LE+G Sbjct 181 EIARRLQTVHDVQIVKRIDLGENVLHRYDPESRLLEISPHLSGGQQVFKFATELAFLEYG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DL+D +V +G FTS ES LARLGLANYFAAATVLPY QFHDVAE+FRYD+ERLSAFYSV Sbjct 241 DLLDKLVAEGGFTSDESVALARLGLANYFAAATVLPYGQFHDVAEDFRYDIERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETI HRLSTLQRP +RGVPF FVRVDRAGNMSKRQSATGFHFS+SGGTCPLWNVYETF Sbjct 301 SYETICHRLSTLQRPKLRGVPFMFVRVDRAGNMSKRQSATGFHFSTSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 A PGKI+ QIAQMPDGR YLW+ARTVE RA RYGQP K FAIGLGCE+RHAHRLVY +GL Sbjct 361 AYPGKIMNQIAQMPDGRRYLWIARTVERRAQRYGQPAKIFAIGLGCEIRHAHRLVYGDGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 DL D + TPIGAGCRVCER NCPQRAFP LG+ LD+ EH+S+VSPYL++ Sbjct 421 DL--DDSNPGTPIGAGCRVCERVNCPQRAFPPLGKQLDISEHQSSVSPYLIR 470 >gi|289760582|ref|ZP_06519960.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289708088|gb|EFD72104.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=367 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/367 (99%), Positives = 367/367 (100%), Gaps = 0/367 (0%) Query 108 VVNLHRRYRITTAQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDL 167 +VNLHRRYRITTAQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDL Sbjct 1 MVNLHRRYRITTAQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDL 60 Query 168 TAQMRMHHGDLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQV 227 TAQMRMHHGDLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQV Sbjct 61 TAQMRMHHGDLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQV 120 Query 228 FKMAAELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENF 287 FKMAAELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENF Sbjct 121 FKMAAELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENF 180 Query 288 RYDVERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSS 347 RYDVERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSS Sbjct 181 RYDVERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSS 240 Query 348 GGTCPLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCE 407 GGTCPLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCE Sbjct 241 GGTCPLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCE 300 Query 408 LRHAHRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVS 467 LRHAHRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVS Sbjct 301 LRHAHRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVS 360 Query 468 PYLVKQL 474 PYLVKQL Sbjct 361 PYLVKQL 367 >gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length=470 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/472 (77%), Positives = 410/472 (87%), Gaps = 2/472 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VG+R+RQLR ERG SQAALA+ LEIS SYLNQIEHDVRPLTV VLLRI+EVFGVD Sbjct 1 MSKTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 TFF+SQDDTRL+AE+REV LD+++ I D E+AEMV++HPGLA A+VN+HRR+R TTA Sbjct 61 TTFFSSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHPGLAKAMVNMHRRFRNTTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLA ATE+R+SDGSG G+ITMPHEEVRDYFYQRQNYLH LDTAAE+LTA+MR H GD+ Sbjct 121 QLALATEDRYSDGSGSGAITMPHEEVRDYFYQRQNYLHELDTAAEELTARMRFHRGDVGG 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+ RRL VH V+I KRIDLG+ VLHRYDP + LEIS HLS GQQVFK A ELA+LE+G Sbjct 181 EIARRLQTVHDVQIVKRIDLGENVLHRYDPESRLLEISPHLSGGQQVFKFATELAFLEYG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DL+D +V +G FTS ES LARLGLANYFAAATVLPY QFHDVAE+FRYD+ERLSAFYSV Sbjct 241 DLLDKLVAEGGFTSDESVALARLGLANYFAAATVLPYGQFHDVAEDFRYDIERLSAFYSV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETI HRLSTLQRP +RGVPF FVRVDRAGNMSKRQSATGFHFS+SGGTCPLWNVYETF Sbjct 301 SYETICHRLSTLQRPKLRGVPFMFVRVDRAGNMSKRQSATGFHFSTSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 A PGKI+ QIAQMPDGR YLW+ARTVE RA RYGQP K FAIGLGCE+RHAHRLVY +GL Sbjct 361 AYPGKIMNQIAQMPDGRRYLWIARTVERRAQRYGQPAKIFAIGLGCEIRHAHRLVYGDGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 DL D + TPIGAGCRVCER NCPQRAFP LG+ LD+ EH+S+VSPYL++ Sbjct 421 DL--DDSNPGTPIGAGCRVCERVNCPQRAFPPLGKQLDISEHQSSVSPYLIR 470 >gi|229490209|ref|ZP_04384056.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229322957|gb|EEN88731.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length=470 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/472 (76%), Positives = 411/472 (88%), Gaps = 2/472 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VG R+RQLR ERG SQA+LA+ LEIS SYLNQIEHDVRPLTV VLLRI+EVFGVD Sbjct 1 MSKTFVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 TFF+ QDDTRL+AE+REV LD+++ I D HE+AEMVS HPGLA A+VN+HRR+R TTA Sbjct 61 TTFFSPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHPGLAKAMVNMHRRFRNTTA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATE+RFSDGSG GSITMPHEEVRDYFYQRQNY+H LDTAAE+LTA+MR H GD+A Sbjct 121 QLAAATEDRFSDGSGSGSITMPHEEVRDYFYQRQNYIHDLDTAAEELTARMRFHRGDVAG 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+ RRL VH V+I +R+DLG+ +LHRYDP T LEIS+ LS GQQVFK A ELAYLE G Sbjct 181 EIARRLESVHDVQIVRRVDLGENILHRYDPDTRVLEISARLSGGQQVFKFATELAYLEHG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DL+D++V +G FTS S +LA+LGLANYFAAATVLPY QFH+VAE+FRYD+ER+SAFYS Sbjct 241 DLLDSLVAEGNFTSEASVSLAKLGLANYFAAATVLPYSQFHEVAEDFRYDIERMSAFYSA 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETI HRLSTLQRP +RGVPF FVRVDRAGNMSKRQSATGFHFS+SGGTCPLWNVYETF Sbjct 301 SYETICHRLSTLQRPKLRGVPFMFVRVDRAGNMSKRQSATGFHFSTSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 + PGKI+ QIAQMPDGR YLWVARTVE RAARYGQP K FAIGLGCE+RHAHRLVYS+GL Sbjct 361 SYPGKIMPQIAQMPDGRRYLWVARTVERRAARYGQPAKIFAIGLGCEIRHAHRLVYSDGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 DL D + TPIG+GCRVCER NCPQRAFP LG+ LD+ EHRS++SPY+++ Sbjct 421 DL--DESNPGTPIGSGCRVCERLNCPQRAFPPLGKDLDISEHRSSISPYVIR 470 >gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length=469 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/471 (77%), Positives = 412/471 (88%), Gaps = 3/471 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VG+R+RQLR ERG SQAALA+ L+IS SYLNQIEHDVRPLTV VLLRI+EVFGVD Sbjct 1 MSKTFVGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDVRPLTVPVLLRISEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 TFF+SQDDTRL+AELREV LD+D+ I D E+AEMVS+HPGLA A+VN+HRR+R T+A Sbjct 61 TTFFSSQDDTRLIAELREVALDKDMGIDADAQEIAEMVSSHPGLAKAMVNMHRRFRNTSA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATE+RFSDGSG GSITMPHEEVRDYFYQRQNY+H LDTAAEDLTA++R H GD+A Sbjct 121 QLAAATEDRFSDGSGSGSITMPHEEVRDYFYQRQNYIHDLDTAAEDLTARLRFHRGDIAD 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 + RRL +H V+I +RIDLG+ VLHRYDP T LEIS LS GQQVFK A ELAYLE G Sbjct 181 GIARRLENLHDVQIVRRIDLGENVLHRYDPETRVLEISPALSGGQQVFKFATELAYLECG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DL+ +V +G FTS E+R+LA LGLANYFAAATVLPY QFH++AE+FRYD+ERLSAFY++ Sbjct 241 DLLRRLVDEGNFTSDEARSLAMLGLANYFAAATVLPYGQFHEIAEDFRYDIERLSAFYAI 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETI HRLSTLQRP RGVP++FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 301 SYETICHRLSTLQRPKQRGVPWSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 A PGKI+ QIAQMPDGRNYLWVARTVE RA RYGQPGKTFAIGLGCELRHA R+VY++GL Sbjct 361 AYPGKIMTQIAQMPDGRNYLWVARTVERRAQRYGQPGKTFAIGLGCELRHAPRVVYADGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLV 471 DL G + ATPIGAGCRVCER NCPQRAFP LG+ LD++EHRS+VSPY + Sbjct 421 DLGG---STATPIGAGCRVCERMNCPQRAFPPLGKELDINEHRSSVSPYTI 468 >gi|333918277|ref|YP_004491858.1| DNA-binding protein [Amycolicicoccus subflavus DQS3-9A1] gi|333480498|gb|AEF39058.1| DNA-binding protein [Amycolicicoccus subflavus DQS3-9A1] Length=490 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/473 (75%), Positives = 411/473 (87%), Gaps = 2/473 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KT+VG+R+RQLR ERG SQ LA+ML+IS SYLNQIEHDVRPLTV VLLRITE+FGVD Sbjct 1 MAKTFVGARLRQLRAERGLSQVELAKMLDISASYLNQIEHDVRPLTVPVLLRITELFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQD TRL+AE+REV LD ++ + D EVA +V HP +A AVVNLHRRYR TT+ Sbjct 61 ATFFASQDTTRLIAEMREVLLDSEVGVDADAQEVASLVQTHPAIARAVVNLHRRYRNTTS 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATE+R++DGSG G+ITMPHEEVRDY YQRQNY H LDTAAE LT QMRMHH D+ R Sbjct 121 QLAAATEDRYNDGSGSGAITMPHEEVRDYVYQRQNYFHELDTAAEQLTVQMRMHHADVRR 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+ RRL VHGV+I KRIDLGD+VLHRY P T +EIS+ LSPGQQVFK A ELAYLE G Sbjct 181 EIARRLERVHGVQIIKRIDLGDSVLHRYHPETRVMEISTRLSPGQQVFKFATELAYLECG 240 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DL+D +V +G F+S +R LAR+ LA YFAAAT+LPYRQFH+VAE+FRYDVER+SAFY+V Sbjct 241 DLLDELVDEGNFSSDAARRLARVSLAKYFAAATMLPYRQFHEVAEDFRYDVERMSAFYAV 300 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYE+I HRLSTLQRP++RGVPF+FVRVDRAGNMSKRQSATGFHFSS+GGTCPLWNVYETF Sbjct 301 SYESICHRLSTLQRPNLRGVPFSFVRVDRAGNMSKRQSATGFHFSSTGGTCPLWNVYETF 360 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 A PGKI+ QIA+MPDGR YLW+ARTVE RA+RYG+PGKTFAIGLGCELRHA R VY++GL Sbjct 361 AYPGKIMRQIAEMPDGRRYLWIARTVERRASRYGEPGKTFAIGLGCELRHAGRTVYADGL 420 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 D+S D T ATPIG GCR+CERD CPQRAFPA+G+ +DL+EHRST+SPYLV++ Sbjct 421 DIS-DSGT-ATPIGVGCRICERDTCPQRAFPAIGKDIDLNEHRSTISPYLVRE 471 >gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length=468 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/472 (74%), Positives = 405/472 (86%), Gaps = 4/472 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KTYVG+R+RQLR ERG SQ ALAQ LEIS SYLNQIEHDVRPLTV VLL+I+EVFGVD Sbjct 1 MAKTYVGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDVRPLTVPVLLKISEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFF+SQDDTRL+AEL+EV +D++L I D E+AEMVSAHP LA A+V +H RYR T+A Sbjct 61 ATFFSSQDDTRLIAELQEVVMDQELGIEADTQEIAEMVSAHPSLARAMVAMHNRYRNTSA 120 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLAAATE+RF+DG+G +I+ PHEEVRDYFYQRQNY+H LDTAAE+LTA++R H GD++ Sbjct 121 QLAAATEDRFADGAGSATISKPHEEVRDYFYQRQNYIHELDTAAEELTARIRFHGGDVST 180 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+TR L E H VRI +RIDLG+ VLHRYDP T LEI+ HLS GQ+ FK+AAELAY E G Sbjct 181 EITRLLRE-HDVRIIERIDLGEGVLHRYDPETRRLEIAPHLSGGQRTFKLAAELAYFECG 239 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 DL++ +V +G F S ++R LA LGLANYFAAATVLPY FH++AE+FRYD+ERLSAF+S Sbjct 240 DLLEKLVDEGNFASEDTRKLAMLGLANYFAAATVLPYTHFHEIAEDFRYDIERLSAFFSQ 299 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETI HRLSTLQRPS+RGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF Sbjct 300 SYETICHRLSTLQRPSLRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 359 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 A PGKI+ QIAQMPDGR YLWVARTVE RA RYGQP KTFAIGLGCELRHA R+VY++G+ Sbjct 360 AYPGKIMTQIAQMPDGRKYLWVARTVERRATRYGQPSKTFAIGLGCELRHASRVVYADGI 419 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 DL ATPIGAGCRVCER NCPQRAFP LG+ LD+ EHRS+VSPY++K Sbjct 420 DLD---QVKATPIGAGCRVCERANCPQRAFPPLGKKLDISEHRSSVSPYVLK 468 >gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length=466 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/472 (73%), Positives = 392/472 (84%), Gaps = 6/472 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKT+VG+R+R LR ERG SQA+LA+ LEISPSYLNQIEHDVRPL+V VLL+IT+VFGVD Sbjct 1 MSKTFVGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDVRPLSVPVLLKITDVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 +FF SQD TRL+AELREVT+D +D E++++ HPG A A+V LHRRY Sbjct 61 TSFFNSQDQTRLIAELREVTMD--VDAPTSTEELSDLARDHPGFARAMVALHRRYLGAAD 118 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 QLA T+ R +D RG+I PHEEVRD+FYQ+QNY H LDTAAE+LTA+MRMH D+ Sbjct 119 QLAQVTDGR-NDPGARGAIPNPHEEVRDFFYQQQNYFHDLDTAAEELTARMRMHSSDVRT 177 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 E+ RL VH V I +R+DLG+TVLHRYDP T LEI+ HLSPGQQVFKMAAELA+LE G Sbjct 178 EIVTRLEAVHNVSIRRRVDLGETVLHRYDPRTRVLEINLHLSPGQQVFKMAAELAFLECG 237 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSV 300 IDA++ F S E+R+LARLGLANY+AAA VLPY QFH AE F+YD+ERLSAF+SV Sbjct 238 REIDALIDGAGFGSDEARSLARLGLANYYAAAVVLPYTQFHGAAEEFQYDIERLSAFFSV 297 Query 301 SYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETF 360 SYETIAHRLSTLQRP++RGVP +FVRVDRAGNMSKRQS+TGFHFS+SGGTCPLWNVYETF Sbjct 298 SYETIAHRLSTLQRPNLRGVPLSFVRVDRAGNMSKRQSSTGFHFSASGGTCPLWNVYETF 357 Query 361 ANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGL 420 A PGKI+ QI +MPDGRNYLWVARTVE RAARYGQPGKTFAIG+GCELRHAHRLVY+ GL Sbjct 358 AWPGKIITQIVEMPDGRNYLWVARTVERRAARYGQPGKTFAIGIGCELRHAHRLVYARGL 417 Query 421 DLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 DLS D N ATPIGAGCRVCER C QRAFPA+G+ALD+DEHRSTVSPYLVK Sbjct 418 DLS-DAN--ATPIGAGCRVCERAGCSQRAFPAIGKALDIDEHRSTVSPYLVK 466 >gi|262200762|ref|YP_003271970.1| hypothetical protein Gbro_0761 [Gordonia bronchialis DSM 43247] gi|262084109|gb|ACY20077.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length=475 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/473 (71%), Positives = 389/473 (83%), Gaps = 6/473 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++KTYVGSR+RQLR+ERG SQ ALAQ L +SPSYLNQIEHD RPLT VL ITE FGVD Sbjct 1 MTKTYVGSRLRQLRSERGLSQVALAQTLSLSPSYLNQIEHDARPLTPKVLSHITEAFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA---IDPHEVAEMVSAHPGLACAVVNLHRRYRI 117 A FF SQDD RLVAELREV LD D++ +D EV+ V+ HP +A A+VNLHRRYR+ Sbjct 61 AGFFDSQDDVRLVAELREVLLDDDVETPAGPVDAQEVSTFVATHPAMAQAMVNLHRRYRV 120 Query 118 TTAQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGD 177 T QLAAAT+ER D S RG+IT PHEEVRDYFYQR+NY+H LD AAE++T++MRMH D Sbjct 121 ATDQLAAATDER-GDRSMRGTITAPHEEVRDYFYQRRNYIHELDVAAEEMTSRMRMHSAD 179 Query 178 LARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYL 237 + RE++ RL VHGV I +R+DLGD LH +DP T LE S+ LS GQ+ FK+A EL L Sbjct 180 IRREISNRLENVHGVSIVRRVDLGDYTLHSFDPQTRRLEFSAALSAGQRTFKLATELCLL 239 Query 238 EFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAF 297 E+ DL+D +V +G FTS ++R+LA+LGLANYFAAA VLPY QFH AE++RYD+ERLSAF Sbjct 240 EYRDLLDDLVDEGNFTSEDARSLAQLGLANYFAAAAVLPYNQFHGAAEDYRYDIERLSAF 299 Query 298 YSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVY 357 Y+VSYETI HRLSTLQRP++RG+P++FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVY Sbjct 300 YAVSYETICHRLSTLQRPNLRGIPWSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVY 359 Query 358 ETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYS 417 ETFA+PGKI QIA+MPDGRNYLWVARTVE RAAR+GQPGKTFAIGLGCELRHA R+VYS Sbjct 360 ETFASPGKISTQIAEMPDGRNYLWVARTVERRAARFGQPGKTFAIGLGCELRHAGRVVYS 419 Query 418 EGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYL 470 +GL++ P TPIGAGCRVCER CPQRAFPALG L + EHRS+VSPY+ Sbjct 420 DGLEIG--PQARVTPIGAGCRVCERQKCPQRAFPALGAPLRVQEHRSSVSPYM 470 >gi|343925742|ref|ZP_08765257.1| putative Xre family DNA-binding protein [Gordonia alkanivorans NBRC 16433] gi|343764093|dbj|GAA12183.1| putative Xre family DNA-binding protein [Gordonia alkanivorans NBRC 16433] Length=476 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/473 (70%), Positives = 388/473 (83%), Gaps = 6/473 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +S+TYVGSR+RQLR+ERG SQ ALAQ L IS SYLNQIEHD RPLT +VL +ITE FGVD Sbjct 1 MSRTYVGSRLRQLRSERGLSQVALAQTLSISASYLNQIEHDARPLTTSVLRKITEAFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPH---EVAEMVSAHPGLACAVVNLHRRYRI 117 A FF SQDD RLVAELREV LD D++ A H +++ MV+AHP +A A+VNLHRRYRI Sbjct 61 AGFFDSQDDLRLVAELREVLLDDDIEAAPGAHDASQISTMVAAHPEIAQAMVNLHRRYRI 120 Query 118 TTAQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGD 177 T QLAAAT+ER D S RG+I+ PHEEVRDYFYQR+NY+H LD AAE++T +MRMH D Sbjct 121 ATDQLAAATDER-GDRSMRGTISAPHEEVRDYFYQRRNYIHELDIAAEEMTNRMRMHSAD 179 Query 178 LARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYL 237 + RE+ R+ VHG+ I +R+DLGD LHR + LE S+ LS GQ+ FK+A+EL YL Sbjct 180 IRREIMNRIENVHGISIVRRVDLGDYTLHRLNAEERRLEFSAALSAGQRTFKLASELCYL 239 Query 238 EFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAF 297 E+ DL+D +V G FTS ++R+LA LGLANYFAAA VLPY QFH AE+FRYD+ERLSAF Sbjct 240 EYHDLLDELVDQGNFTSEDARSLALLGLANYFAAAVVLPYSQFHGAAEDFRYDIERLSAF 299 Query 298 YSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVY 357 Y+VSYETI HRLSTLQRP++RG+P++FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVY Sbjct 300 YAVSYETICHRLSTLQRPNLRGIPWSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVY 359 Query 358 ETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYS 417 ETFA+PGKIL QIA+MPDGRNY WVARTVE RAARYGQPGKTFAIG+GCELRHA R++YS Sbjct 360 ETFASPGKILTQIAEMPDGRNYFWVARTVERRAARYGQPGKTFAIGMGCELRHAGRVIYS 419 Query 418 EGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYL 470 +GL++ P TPIGAGCRVCER NC QRAFPALG L ++EH STVSPY+ Sbjct 420 DGLEIG--PQAHVTPIGAGCRVCERTNCAQRAFPALGATLRVNEHSSTVSPYM 470 >gi|317508458|ref|ZP_07966127.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] gi|316253236|gb|EFV12637.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] Length=486 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/472 (68%), Positives = 381/472 (81%), Gaps = 5/472 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 V+KTYVG R+RQLR ERG SQ ALA L ISPSYLNQIEHDVRP+T+ +LLR++E GVD Sbjct 16 VAKTYVGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPITMPLLLRLSEKLGVD 75 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 FF +Q++ RLVAE+REV +D +DI P VAE+VSAHP A A++ L+ RYR Sbjct 76 TEFFTAQEEARLVAEIREVAMDTGVDIDTSPESVAEVVSAHPKFARAMLQLYHRYRELAD 135 Query 121 QLAAATEERFSDGSGRGSI-TMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLA 179 Q+AA E R G +I +MPHEEV+ YFY+RQNYL +LD AAED+T +MRM+ G+L Sbjct 136 QVAALGEHR--AGEPLPAIASMPHEEVQQYFYERQNYLDSLDRAAEDVTRRMRMNGGELH 193 Query 180 RELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEF 239 E+ L HGVRI +R+DL + V H+YDPA +L I++ L+PGQ+VFK+A ELA+LE Sbjct 194 SEIPTLLRSSHGVRIVERVDLPEGVSHQYDPAARSLSIAARLAPGQRVFKLATELAFLEH 253 Query 240 GDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYS 299 G LI+ +V +G F+S +S +LAR+ LA Y+AAA VLPYRQF++VAE FRYD+ERLSA+++ Sbjct 254 GALIEELVEEGDFSSEDSASLARMALAKYYAAAIVLPYRQFYEVAEEFRYDIERLSAYFA 313 Query 300 VSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYET 359 VSYETI HRLSTLQR ++RGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYET Sbjct 314 VSYETICHRLSTLQRANLRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYET 373 Query 360 FANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEG 419 F +PGKILVQ+AQMP+GR+YLWVARTVE RAA YGQPGKTF IGLGCE RHAHRLVY +G Sbjct 374 FGSPGKILVQLAQMPEGRSYLWVARTVERRAAHYGQPGKTFGIGLGCETRHAHRLVYGDG 433 Query 420 LDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLV 471 LDLS N ATPIG GCRVCER+NCPQRAFP LGR LDLDEHRSTVSPYLV Sbjct 434 LDLSNRAN--ATPIGTGCRVCERENCPQRAFPPLGRKLDLDEHRSTVSPYLV 483 >gi|296394319|ref|YP_003659203.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181466|gb|ADG98372.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length=471 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/470 (67%), Positives = 378/470 (81%), Gaps = 3/470 (0%) Query 3 KTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDAT 62 KTY G R+RQLR ERG SQ ALA L ISPSYLNQIEHDVRPLTV +L+R++E GVDA Sbjct 3 KTYAGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPLTVPLLVRLSETLGVDAE 62 Query 63 FFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTAQL 122 FF +Q++ RLVAE+REV +D +DI P V ++VSAHP A A++ L+ RYR Q Sbjct 63 FFTAQEEARLVAEIREVAMDTGIDIGAHPEAVTQVVSAHPKFARAMLQLYHRYRELADQF 122 Query 123 AAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAREL 182 AA E R + S +MPHEEV+ YFY+RQNYL +LD AAED+T +MRM+ G+L E+ Sbjct 123 AALGELRTGEALP-ASASMPHEEVQQYFYERQNYLDSLDRAAEDVTRRMRMNGGELHTEI 181 Query 183 TRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFGDL 242 L HGVRI +R+DL D V H+YDPAT +L I++ LSPGQ++FK+A ELA+LE G+L Sbjct 182 PTLLRSSHGVRIVERVDLPDRVSHQYDPATRSLSIANRLSPGQRIFKLATELAFLEHGEL 241 Query 243 IDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSVSY 302 ID + +G F+S +S LAR+ LA Y+AAA VLPYRQFH+VAE FRYD+ERLSA+++VSY Sbjct 242 IDELTAEGDFSSEDSVRLARMALAKYYAAAIVLPYRQFHEVAEEFRYDIERLSAYFAVSY 301 Query 303 ETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFAN 362 ETI HRLST+QR + RGVPF+FVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFA+ Sbjct 302 ETICHRLSTMQRANPRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFAS 361 Query 363 PGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGLDL 422 PGKIL Q+AQMPDGR+YLW+ARTVE RAARYGQPGKTF IGLGCE RHAHRLVY++GLDL Sbjct 362 PGKILTQLAQMPDGRSYLWMARTVERRAARYGQPGKTFGIGLGCETRHAHRLVYADGLDL 421 Query 423 SGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVK 472 + N ATPIG+GCRVCER++CPQRAFP LGR LDLDEHRST++PY V+ Sbjct 422 ASPAN--ATPIGSGCRVCERESCPQRAFPPLGRKLDLDEHRSTITPYAVE 469 >gi|326383144|ref|ZP_08204833.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] gi|326198280|gb|EGD55465.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] Length=469 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/469 (68%), Positives = 370/469 (79%), Gaps = 6/469 (1%) Query 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 +VG R+R LR +R SQ ALA ML IS SYLNQIEHD RPLT VL +ITE+FG+D FF Sbjct 2 FVGGRIRGLRADRALSQQALAAMLGISASYLNQIEHDNRPLTGPVLAKITEMFGLDIDFF 61 Query 65 ASQDDTRLVAELREVTLDRDLDI---AIDPHEVAEMVSAHPGLACAVVNLHRRYRITTAQ 121 QDD RLVAELRE LD DLD A D EVA MV +H +A A+V +++RYR+ + Q Sbjct 62 DPQDDVRLVAELREALLDEDLDFDPAASDAGEVASMVGSHRAIAEALVGMYQRYRVVSEQ 121 Query 122 LAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLARE 181 LAAAT R D S RG+I+ PHEEVR++FYQR+NY+H LD AAEDLT +MRMH D+ Sbjct 122 LAAATAGR-GDASTRGTISAPHEEVRNFFYQRRNYIHELDEAAEDLTTRMRMHSADVRTG 180 Query 182 LTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFGD 241 L RL + HGVRI +R+DLGD VLHR+DP LE S+ LS GQ+ FK+AAELAYLEFGD Sbjct 181 LAARLEDRHGVRIVRRVDLGDDVLHRFDPERRQLEFSAALSAGQRTFKIAAELAYLEFGD 240 Query 242 LIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSVS 301 LID +V +G FT+ ++ L R GLANYFAAA VLPY QFH AE+FRYD+ERLSAFY+VS Sbjct 241 LIDGLVDEGGFTTDDAAALGRQGLANYFAAAAVLPYSQFHGAAEDFRYDIERLSAFYAVS 300 Query 302 YETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFA 361 YETI HRLSTLQRPS+RGVP+TFVRVDRAGNMSKRQSATGF+FSSSGGTCPLWNVYE F Sbjct 301 YETICHRLSTLQRPSLRGVPWTFVRVDRAGNMSKRQSATGFNFSSSGGTCPLWNVYEAFV 360 Query 362 NPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGLD 421 +PGKIL QI +MPDGR Y WV+RTVE RAARYGQPGK+FAIG+GCELRHA R++YS+G + Sbjct 361 SPGKILTQITEMPDGREYFWVSRTVERRAARYGQPGKSFAIGMGCELRHADRVIYSDGTE 420 Query 422 LSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYL 470 + P TPIGAGCRVC+R NCPQRAFP LG L +DEHRSTVSPY+ Sbjct 421 IG--PTAKVTPIGAGCRVCDRLNCPQRAFPQLGANLAIDEHRSTVSPYM 467 >gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length=478 Score = 588 bits (1516), Expect = 6e-166, Method: Compositional matrix adjust. Identities = 291/477 (62%), Positives = 364/477 (77%), Gaps = 11/477 (2%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSR+RQLR ER SQAALAQ L +S SY+NQIEHDVRPLTV VLLRIT+ FGVD Sbjct 5 MSKTYVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDVRPLTVPVLLRITDTFGVD 64 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA-IDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ DD+RL+AE+++V +D+++ + +D E++EMV HP +A +V++HRRYR T Sbjct 65 ATFFSRDDDSRLLAEVQDVVMDKEIAKSPMDLQEISEMVRDHPDIARIMVDIHRRYRNVT 124 Query 120 AQLAAATEER-FSD----GSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRM- 173 +L+ ATEER F + SG ++TMPHEEVRDYFY RQNY+ ++DTAAE+L ++R+ Sbjct 125 DKLSLATEERNFGNSTDTASGSQALTMPHEEVRDYFYARQNYIASVDTAAEELARELRIT 184 Query 174 -HHGDLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAA 232 D+ L RL+ HG+RI LGD V H D T TL ++ HLSPGQ+ F+MA Sbjct 185 DETTDVVSVLADRLSSDHGIRIALESSLGD-VQHSLDRRTKTLYLARHLSPGQRAFRMAT 243 Query 233 ELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVE 292 EL +LE G+ I V G F S ESR LA+ G+A Y+AAA +LPY FH +AE+ RYD+E Sbjct 244 ELGFLEQGETISEAVASGHFMSEESRKLAQRGVATYYAAALILPYESFHAMAESKRYDIE 303 Query 293 RLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCP 352 LS Y V YETI HRLST+QRPS+RG+P+TFVRVDRAGNMSKRQSATGFHF+ SGGTCP Sbjct 304 LLSRTYGVGYETICHRLSTMQRPSLRGIPWTFVRVDRAGNMSKRQSATGFHFTHSGGTCP 363 Query 353 LWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAH 412 LWNVYETF+ PGK++ Q+A MPDGR Y+W++RTVE AAR+G+PGK FAIGLGCE RHA Sbjct 364 LWNVYETFSYPGKVMRQVALMPDGRPYMWISRTVEHHAARFGKPGKVFAIGLGCEARHAE 423 Query 413 RLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 R VY++GLDL+ AATPIGAGCRVC R+ CPQRAFP + R +D++ HRSTVSPY Sbjct 424 RTVYADGLDLAD--LDAATPIGAGCRVCSREACPQRAFPPIHRDIDINMHRSTVSPY 478 >gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4] gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4] Length=479 Score = 578 bits (1490), Expect = 8e-163, Method: Compositional matrix adjust. Identities = 278/470 (60%), Positives = 358/470 (77%), Gaps = 4/470 (0%) Query 6 VGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFFA 65 +G+R+R+LR E G +QAA AQ L +S SYLNQ+E D RP+T VL++I+EV+GVD+TFFA Sbjct 1 MGARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSRVLVKISEVYGVDSTFFA 60 Query 66 SQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTAQLAAA 125 S DTRL+A + E D L + EV ++V AHP LA A + LH+RYR + LAA Sbjct 61 SDSDTRLIAAVTEALTDTQLSTEVPADEVVDLVRAHPALARAFMLLHQRYRNSADLLAAL 120 Query 126 TEERFSDGS--GRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLARELT 183 TE R S R ++MPHEEVRDYFYQRQNY+ +LDTAAEDLT ++R++ GD+ EL Sbjct 121 TETRNVPESTVDRSVLSMPHEEVRDYFYQRQNYIDSLDTAAEDLTTRIRLNRGDVRVELE 180 Query 184 RRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFGDLI 243 RL E HGVRI++R+DL D + H + L++S+HL+PGQQ F++A+ELA+LE DL+ Sbjct 181 NRLAEAHGVRISRRVDLPDGLWHVFSTEDRRLDLSAHLTPGQQAFRVASELAFLEHRDLL 240 Query 244 DAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSVSYE 303 D++V +G FTS + LA GLA+YFAAA ++PY++F D AE+FRYD+ERL AF++ YE Sbjct 241 DSLVEEGAFTSPAAVALALRGLASYFAAAVLMPYQRFLDTAEDFRYDIERLMAFHATGYE 300 Query 304 TIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFANP 363 T+ HRLSTLQRP GVPF+FVRVDRAGNMSKRQSA+GFHF++SGGTCPLWN+YE+F+ P Sbjct 301 TVCHRLSTLQRPGAAGVPFSFVRVDRAGNMSKRQSASGFHFTTSGGTCPLWNIYESFSFP 360 Query 364 GKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGLDLS 423 GKI+ Q+AQMPDGR +LWV+RTV R R+GQP KTFAIGLGCE RHAHR VY++GLDL Sbjct 361 GKIMRQVAQMPDGRLHLWVSRTVTTRPMRFGQPRKTFAIGLGCEARHAHRTVYAQGLDL- 419 Query 424 GDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQ 473 D AAT IG+GCR+C+R CPQRAFP L L +D HRS++SPYL+ + Sbjct 420 -DDVDAATKIGSGCRMCDRPACPQRAFPPLNHELRVDAHRSSLSPYLLGE 468 >gi|289748952|ref|ZP_06508330.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289689539|gb|EFD56968.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=341 Score = 572 bits (1474), Expect = 5e-161, Method: Compositional matrix adjust. Identities = 283/286 (99%), Positives = 284/286 (99%), Gaps = 0/286 (0%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD Sbjct 43 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 102 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTA 120 ATFFASQDDTRLVAELREVTLDRDLDIAID HEVAEMVSAHPGLA AVVNLHRRYRITTA Sbjct 103 ATFFASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHPGLARAVVNLHRRYRITTA 162 Query 121 QLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 180 +LAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR Sbjct 163 RLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLAR 222 Query 181 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 240 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG Sbjct 223 ELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFG 282 Query 241 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAEN 286 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAEN Sbjct 283 DLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAEN 328 >gi|68537028|ref|YP_251733.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|260579374|ref|ZP_05847256.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] gi|68264627|emb|CAI38115.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|258602503|gb|EEW15798.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] Length=501 Score = 569 bits (1466), Expect = 5e-160, Method: Compositional matrix adjust. Identities = 287/488 (59%), Positives = 355/488 (73%), Gaps = 26/488 (5%) Query 3 KTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDAT 62 + +VGSR+RQLR ERG SQA LA++L++S SY+NQIEHD RPLT AVL RIT FGVD T Sbjct 19 RPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITAAFGVDPT 78 Query 63 FFASQDDTRLVAELREVTLDRDLD-IAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTAQ 121 FFA QD TRL+AE+++VTLD ++ D E+A +V HP LA A V+LH RYR + Sbjct 79 FFADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPDLARAFVDLHSRYRNVSDT 138 Query 122 LAAATEER---------------FSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAED 166 L+ TEER F SG + +MPH+EVRD+FY RQNY+ LD AAE Sbjct 139 LSLLTEERVQGSAILSITPKGELFGRASGPEAFSMPHDEVRDFFYARQNYIDVLDVAAEK 198 Query 167 LTAQM-----RMHHGDLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHL 221 L +++ ++HH + + + RL +VH V++ DLGDT H++DP TL +SS + Sbjct 199 LASKINIGANQIHHTE--QIIAERLQQVHQVQVIYSRDLGDTQ-HKFDPKRKTLHVSSKM 255 Query 222 SPGQQVFKMAAELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFH 281 PGQ F++A ELA+LE G ID++V G F S ESR LAR GLA+Y+AAA +LPY+QFH Sbjct 256 RPGQIAFRLATELAFLEAGTTIDSLVELGHFQSEESRALARRGLASYYAAALLLPYQQFH 315 Query 282 DVAENFRYDVERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATG 341 AE RYD+E L Y V YET+ HRLS+LQRPS+RGVP+TFVRVDRAGNMSKRQSATG Sbjct 316 SSAEESRYDLEFLMREYGVGYETVCHRLSSLQRPSLRGVPWTFVRVDRAGNMSKRQSATG 375 Query 342 FHFSSSGGTCPLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFA 401 H S+SGGTCPLWNVYETF+ PGKI+ QIAQMPDGR YLW+ARTV A +GQPGK FA Sbjct 376 LHLSNSGGTCPLWNVYETFSYPGKIMRQIAQMPDGRTYLWIARTVNHHRAAWGQPGKMFA 435 Query 402 IGLGCELRHAHRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDE 461 IGLGCELRHA R VYS+GLDL + +AA PIG+GCR+C RDNCPQRAFP + R+L++D Sbjct 436 IGLGCELRHADRTVYSDGLDL--EDTSAAVPIGSGCRLCPRDNCPQRAFPPIHRSLEIDP 493 Query 462 HRSTVSPY 469 HRS+VSPY Sbjct 494 HRSSVSPY 501 >gi|337289904|ref|YP_004628925.1| HTH 3 family transcription regulator [Corynebacterium ulcerans BR-AD22] gi|334696027|gb|AEG80824.1| HTH 3-family transcription regulator [Corynebacterium ulcerans 809] gi|334698210|gb|AEG83006.1| HTH 3-family transcription regulator [Corynebacterium ulcerans BR-AD22] Length=475 Score = 553 bits (1426), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 278/478 (59%), Positives = 352/478 (74%), Gaps = 12/478 (2%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSR+RQLR ERG SQA LA LE+S SY+NQIEHDVRPLT+ VL RITEVFGVD Sbjct 1 MSKTYVGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA-IDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ DD+RL+AE+ +V LD++L ID E++++V HP +A AVV +HRRYR Sbjct 61 ATFFSKDDDSRLLAEVHDVMLDKELCPEDIDLQELSDLVDHHPDIARAVVEMHRRYRNVR 120 Query 120 AQLAAATEERFSDG-----SGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMH 174 +L+AAT+ R + + +++MPH+EVRD+FY RQNYL LD AE ++A++ + Sbjct 121 DKLSAATDVRLVNSLDETQAISEALSMPHDEVRDFFYARQNYLDELDHTAEAISAELGIT 180 Query 175 HGDL-ARE--LTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMA 231 ++ A E L RL HGV I ID+G T LH +D T L +S+ L GQ+ F++A Sbjct 181 TFNIRANEATLIDRLESRHGVTIKAGIDIGST-LHHFDTHTRVLTLSTRLITGQRAFRLA 239 Query 232 AELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDV 291 ELA+LE + IDA++ D FTS E+RTLAR G+A+YFAAA +LPYR FH AE YD+ Sbjct 240 TELAFLEANERIDALLADAYFTSTEARTLARRGIASYFAAAVMLPYRMFHSEAERSGYDI 299 Query 292 ERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTC 351 E L + V YETI HRLSTLQRP++RG+PFTFVRVDRAGN+SKRQSATGFHF+ +GGTC Sbjct 300 EYLCQMFGVGYETICHRLSTLQRPNLRGIPFTFVRVDRAGNISKRQSATGFHFTHAGGTC 359 Query 352 PLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHA 411 PLWNVYETF +PG I+ Q+AQMPDGRNYLWVARTV R+G+ GK F+IGLGCE RHA Sbjct 360 PLWNVYETFTSPGTIMRQLAQMPDGRNYLWVARTVRHHQGRFGETGKMFSIGLGCEARHA 419 Query 412 HRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 R VY+ GLD+ N A PIGAGCRVC R++C QRAFPA+ + + +D H S+V+PY Sbjct 420 ARTVYAHGLDVKTFAN--AVPIGAGCRVCTREDCAQRAFPAVNKLIAIDAHTSSVAPY 475 >gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length=514 Score = 548 bits (1412), Expect = 7e-154, Method: Compositional matrix adjust. Identities = 278/488 (57%), Positives = 341/488 (70%), Gaps = 22/488 (4%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 ++ +VGSR+RQLR ER SQA LA L +S SY+NQIEHD RPLT+AVL +IT FGVD Sbjct 30 TNRNFVGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQRPLTLAVLQKITRAFGVD 89 Query 61 ATFFASQDDTRLVAELREVTLDRDL-DIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFFA++D RL+AE+++V DRD+ +D E+AE+V HP +A A+V++H RYR + Sbjct 90 ATFFANEDSLRLLAEVQDVMADRDIWPTPVDVTELAELVRHHPAIARAMVDMHSRYRNVS 149 Query 120 AQLAAATEER---------------FSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAA 164 +L ATEER F SG + +MPHEEVRDYFY RQNY+ LD A Sbjct 150 DKLTLATEERLQGSAVLSITPRGELFGRASGPEAFSMPHEEVRDYFYARQNYVDVLDVQA 209 Query 165 EDLTAQMRMHHGDLARE---LTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHL 221 E L ++ + + L RLT+ H V + D+GDT H +DP T L +S+ + Sbjct 210 EKLAKKLNLGATQIRHAEAILVDRLTDKHNVTVTYSRDMGDTQ-HSFDPETKRLYVSAMM 268 Query 222 SPGQQVFKMAAELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFH 281 PGQ F++A ELAYLE G I ++V G FTS SR LA GLA Y+AAA ++PY QFH Sbjct 269 RPGQIAFRLATELAYLEAGPTIRSLVELGNFTSDASRRLASRGLATYWAAALLMPYGQFH 328 Query 282 DVAENFRYDVERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATG 341 AE RYD+E L Y V YET+ HRLSTLQRPS+RGVPFTFVRVDRAGNMSKRQSA+G Sbjct 329 ASAEESRYDLEFLMREYGVGYETVCHRLSTLQRPSLRGVPFTFVRVDRAGNMSKRQSASG 388 Query 342 FHFSSSGGTCPLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFA 401 H S SGGTCPLWNVYETF+ PGKI+ QIAQMPDGR YLWVARTV + +G PGK FA Sbjct 389 LHLSGSGGTCPLWNVYETFSYPGKIMRQIAQMPDGRTYLWVARTVNHHRSAWGNPGKMFA 448 Query 402 IGLGCELRHAHRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDE 461 IGLGCELRHA R VY++GLDL + +AATPIG+GCR+C R CPQRAFP + R +D+D Sbjct 449 IGLGCELRHAQRTVYADGLDL--EDTSAATPIGSGCRLCPRTTCPQRAFPPIDRQVDIDA 506 Query 462 HRSTVSPY 469 HRS+VSPY Sbjct 507 HRSSVSPY 514 >gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302205396|gb|ADL09738.1| HTH-type transcriptional regulator [Corynebacterium pseudotuberculosis C231] gi|302329950|gb|ADL20144.1| HTH-type transcriptional regulator [Corynebacterium pseudotuberculosis 1002] gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium pseudotuberculosis I19] gi|341824060|gb|AEK91581.1| HTH-type transcriptional regulator [Corynebacterium pseudotuberculosis PAT10] Length=475 Score = 548 bits (1411), Expect = 1e-153, Method: Compositional matrix adjust. Identities = 277/478 (58%), Positives = 350/478 (74%), Gaps = 12/478 (2%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSR+RQLR ERG SQA LA LE+S SY+NQIEHDVRPLT+ VL RITEVFGVD Sbjct 1 MSKTYVGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA-IDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ D +RL+AE+ +V LD++L ID E++++V HP +A AVV +HRRYR Sbjct 61 ATFFSKDDASRLLAEVHDVMLDKELCPEDIDLQELSDLVDHHPDIARAVVEMHRRYRNVR 120 Query 120 AQLAAATEERFSDG-----SGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMH 174 +L+AAT+ R + + G+++MPH+EVRD+FY RQNYL LD AE ++A++ + Sbjct 121 DKLSAATDARLVNSLDETRTISGALSMPHDEVRDFFYARQNYLDDLDHTAEAISAELGIT 180 Query 175 HGDL-ARE--LTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMA 231 ++ A E L RL HGV I D+G T LH +D T L +S+ L GQ+ F++A Sbjct 181 TFNIRANEAALIDRLESRHGVTIKAGRDIGST-LHHFDTQTRVLTLSTRLITGQRAFRLA 239 Query 232 AELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDV 291 ELA+LE + IDA + D FTS E+RTLAR G+A+YFAAA +LPYR FH AE YD+ Sbjct 240 TELAFLEANERIDAYLADAYFTSKEARTLARRGIASYFAAAVMLPYRLFHAEAERSGYDI 299 Query 292 ERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTC 351 E L + V YETI HRLSTLQRP++RG+PFTFVRVDRAGN+SKRQSATGFHF+ +GGTC Sbjct 300 EYLCQMFGVGYETICHRLSTLQRPNLRGIPFTFVRVDRAGNISKRQSATGFHFTHAGGTC 359 Query 352 PLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHA 411 PLWNVYETF +PG I+ Q+AQMPDGRNYLWVARTV R+G+ GK F+IGLGCE RHA Sbjct 360 PLWNVYETFTSPGTIMRQLAQMPDGRNYLWVARTVRHHQGRFGETGKMFSIGLGCEARHA 419 Query 412 HRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 R VY+ GLD+ N A PIGAGCRVC R++C QRAFPA+ + + +D H S+V+PY Sbjct 420 ARTVYAHGLDVKTFAN--AVPIGAGCRVCTREDCAQRAFPAVNKLIAIDAHMSSVAPY 475 >gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length=468 Score = 546 bits (1407), Expect = 3e-153, Method: Compositional matrix adjust. Identities = 276/473 (59%), Positives = 347/473 (74%), Gaps = 9/473 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSR+RQLR ER SQA+LA L +S SY+NQIEHDVRPLTV VLLRITEVFGVD Sbjct 1 MSKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA-IDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ DD+RL+AE+++V D++L + ++ E++E+V HP +A +V++HRRYR Sbjct 61 ATFFSRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPTVARTLVDIHRRYRNVR 120 Query 120 AQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHH---G 176 +L+ AT+ R + +G +++MPH+EVRD+FY RQNYL LD AE L +++ + Sbjct 121 DKLSLATDSRRT--AGTQALSMPHDEVRDFFYARQNYLDELDLHAEALASKLNVSQFRIR 178 Query 177 DLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAY 236 D L RLTE HGV I + D LHR+D T ++S L+ GQ+ F+MAAEL + Sbjct 179 DTEAALAVRLTEKHGVEILTTPQM-DGTLHRFDSEEGTFRLASRLTEGQRAFRMAAELGF 237 Query 237 LEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA 296 LE G LIDA+V + FTS SR LA+ G+A+YFAAAT+LPY H AE YD+E L Sbjct 238 LEAGSLIDALVDEEPFTSEASRNLAKRGIASYFAAATILPYTTIHAEAEQSGYDLEYLCQ 297 Query 297 FYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV 356 + V YET+A RLSTLQRP+ RG+PFTFVRVDRAGNMSKRQSATG HFS+SGGTCPLWN+ Sbjct 298 VFGVGYETVASRLSTLQRPNKRGIPFTFVRVDRAGNMSKRQSATGVHFSNSGGTCPLWNI 357 Query 357 YETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVY 416 YETF+ PG I Q+AQMPDGRNYLW++R+V+ RYG K FAIGLGCE RHA R VY Sbjct 358 YETFSKPGVISRQVAQMPDGRNYLWISRSVQHHQGRYGDTNKLFAIGLGCEARHADRTVY 417 Query 417 SEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 +EGLDL GD +AATPIG GCR C R NC QRAFPA+ L++D HRS+V+PY Sbjct 418 AEGLDL-GDL-SAATPIGNGCRTCPRANCAQRAFPAINETLNIDAHRSSVAPY 468 >gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314] gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314] Length=474 Score = 542 bits (1396), Expect = 5e-152, Method: Compositional matrix adjust. Identities = 273/477 (58%), Positives = 344/477 (73%), Gaps = 11/477 (2%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 + KTYVGSR+RQLR ER SQA+LA L +S SY+NQIEHDVRPLTV VLLRITE FGVD Sbjct 1 MGKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLD-IAIDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ DD+RL+AE+++V LDR+++ +I+ E++EMV HP LA A+V +HRRYR Sbjct 61 ATFFSRDDDSRLLAEVQDVMLDREINPSSIELQELSEMVYNHPQLARAMVEMHRRYRNVR 120 Query 120 AQLAAATEERFSDGSGR----GSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHH 175 +L+ A + R + R +++MPHEEVRD+ Y RQNY LD AE + AQ+ Sbjct 121 DKLSIAVDNRHNSPEERRPIAEAVSMPHEEVRDFIYARQNYFDTLDRRAEAIAAQLGWQP 180 Query 176 GD---LARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAA 232 D + +TRRL H V I + VLH ++ T L + + L+PGQ+ F++A Sbjct 181 YDARAMEDAITRRLQLDHNVTIENSTE-ESGVLHHFNTETRVLNVHARLTPGQKAFRLAT 239 Query 233 ELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVE 292 EL YLE DLI+ +V DG +T+ E+RTLA G+A+YFAAA +LPY+ FH AE YD+E Sbjct 240 ELGYLEANDLIEGIVDDGHWTTPEARTLAIRGVASYFAAAVMLPYKLFHSEAERSGYDIE 299 Query 293 RLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCP 352 L + V YET AHRLSTLQRP++RG+PFTFVRVDRAGNMSKRQSATGFHF+ GGTCP Sbjct 300 YLGQVFGVGYETTAHRLSTLQRPNLRGIPFTFVRVDRAGNMSKRQSATGFHFTHYGGTCP 359 Query 353 LWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAH 412 LWNV+ETF NP K+L Q AQMPDGRNYLW++RTV AR+G GK FAIGLGCE RHA Sbjct 360 LWNVFETFTNPEKVLRQFAQMPDGRNYLWISRTVRHHQARFGDTGKLFAIGLGCEARHAD 419 Query 413 RLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 R VYS G +L D +T ATPIG+GCRVC R+NC QRAFP++ + +D+D H STV+PY Sbjct 420 RTVYSRGFNLQ-DLST-ATPIGSGCRVCTRENCAQRAFPSVHKRIDIDAHESTVAPY 474 >gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] Length=468 Score = 540 bits (1391), Expect = 2e-151, Method: Compositional matrix adjust. Identities = 274/473 (58%), Positives = 345/473 (73%), Gaps = 9/473 (1%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 +SKTYVGSR+RQLR ER SQA+LA L +S SY+NQIEHDVRPLTV VLL+ITE FGVD Sbjct 1 MSKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLKITEAFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA-IDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ DD+RL+AE+++V D+++ + ++ E++E+V HP +A +V++HRRYR Sbjct 61 ATFFSRDDDSRLLAEIQDVVQDQEICPSPVELQELSELVYNHPTVARTLVDIHRRYRNIR 120 Query 120 AQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRM---HHG 176 +L+ AT+ R SDGS +++MPH+EVRD+FY RQNYL LD AE + A++ + H Sbjct 121 DKLSLATDTRRSDGSQ--ALSMPHDEVRDFFYARQNYLDELDIHAEGIAAELGVTPFHIR 178 Query 177 DLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAY 236 D+ + L RLT HGV I D D LHR+D + TL ++S LS GQ+ F+MAAEL + Sbjct 179 DIEQSLNDRLTSQHGVEI-LTTDRMDGTLHRFDKDSGTLRLASRLSVGQRAFRMAAELGF 237 Query 237 LEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSA 296 LE G LI +V + FTS S LA+ G+ANY+AAAT+LPY H AE YDVE L Sbjct 238 LEAGGLISDLVDEEPFTSDASINLAKRGIANYYAAATLLPYNLIHSEAEQSGYDVEYLCN 297 Query 297 FYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNV 356 + V YETIA RLSTLQRP+ RG+PFTFVRVDRAGNMSKRQSATG HFS+SGGTCPLWNV Sbjct 298 VFGVGYETIASRLSTLQRPNRRGIPFTFVRVDRAGNMSKRQSATGVHFSNSGGTCPLWNV 357 Query 357 YETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVY 416 YE+F+ P I Q+AQMPDGRNYLWV+RTV R+G K F+IGLGCE RHA+R VY Sbjct 358 YESFSRPNTISRQLAQMPDGRNYLWVSRTVSYPQGRFGDTNKLFSIGLGCEARHANRTVY 417 Query 417 SEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 ++GL+L D ++ATPIGAGCR C R NC QRAFPA+ L +D HRS V+PY Sbjct 418 AQGLNL--DALSSATPIGAGCRTCPRQNCAQRAFPAINEQLVIDAHRSAVAPY 468 >gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R] gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R] Length=474 Score = 538 bits (1386), Expect = 7e-151, Method: Compositional matrix adjust. Identities = 272/477 (58%), Positives = 345/477 (73%), Gaps = 11/477 (2%) Query 1 VSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVD 60 + KTYVGSR+RQLR ER SQA+LA L +S SY+NQIEHDVRPLTV VLLRITE FGVD Sbjct 1 MGKTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVD 60 Query 61 ATFFASQDDTRLVAELREVTLDRDLDIA-IDPHEVAEMVSAHPGLACAVVNLHRRYRITT 119 ATFF+ DD+RL+AE+++V LDR+++ A ++ E++EMV HP LA A+V +H+RYR Sbjct 61 ATFFSRDDDSRLLAEVQDVMLDREINPANVELQELSEMVYNHPQLARAMVEMHQRYRNVR 120 Query 120 AQLAAATEERFSDGSGR----GSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHH 175 +L+ A + R + R +++MPHEEVRD+ Y RQNY ALD AE + AQ+ Sbjct 121 DKLSIAVDNRTNTPEERRPIAEAVSMPHEEVRDFIYARQNYFDALDRRAEAIAAQLGWQP 180 Query 176 GD---LARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAA 232 D + + RRL H V I + T LH +DP T L I + L+PGQ+ F+MA Sbjct 181 YDSRAMEDSIARRLQMDHDVTITSSKEESGT-LHHFDPETRLLTIHARLNPGQRAFRMAT 239 Query 233 ELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVE 292 EL YLE DLI+ +V DG +++ E+RTLA G+A+YFAAA +LPY+ FH AE YD+E Sbjct 240 ELGYLEANDLIEGIVDDGIWSTPEARTLAIRGVASYFAAAVMLPYKIFHAEAEKSGYDIE 299 Query 293 RLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCP 352 L + V YET AHRLSTLQRP++RG+PFTFVRVDRAGNMSKRQSATGFHF+ GGTCP Sbjct 300 YLGQLFGVGYETTAHRLSTLQRPNLRGIPFTFVRVDRAGNMSKRQSATGFHFTHYGGTCP 359 Query 353 LWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAH 412 LWNV+ETF NPG++L Q AQMPDGRNYLW++RTV AR+G+ K FAIGLGCE RHA Sbjct 360 LWNVFETFTNPGQVLRQFAQMPDGRNYLWISRTVRHHEARFGEVDKMFAIGLGCEARHAD 419 Query 413 RLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 R VYS G +L D +T ATPIG+GCRVC R+NC QRAFP++ +++D H ST++PY Sbjct 420 RTVYSRGFNLQ-DLST-ATPIGSGCRVCTRENCAQRAFPSVHGRINIDAHESTIAPY 474 Lambda K H 0.322 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1006914218534 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40