BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0471c
Length=162
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607612|ref|NP_214985.1| hypothetical protein Rv0471c [Mycob... 321 2e-86
gi|289441853|ref|ZP_06431597.1| hypothetical protein TBLG_02596 ... 320 5e-86
gi|289446014|ref|ZP_06435758.1| conserved hypothetical protein [... 319 1e-85
gi|306806281|ref|ZP_07442949.1| hypothetical protein TMGG_03480 ... 318 1e-85
gi|289568390|ref|ZP_06448617.1| hypothetical protein TBJG_03494 ... 270 4e-71
gi|320159719|ref|YP_004172943.1| putative prenyltransferase [Ana... 59.3 2e-07
gi|88706563|ref|ZP_01104267.1| UbiA prenyltransferase [Congregib... 55.8 2e-06
gi|88798571|ref|ZP_01114155.1| 1,4-dihydroxy-2-naphthoate octapr... 49.3 2e-04
gi|39997062|ref|NP_953013.1| hypothetical protein GSU1964 [Geoba... 40.4 0.081
gi|298251774|ref|ZP_06975577.1| ATPase associated with various c... 37.4 0.78
gi|254514686|ref|ZP_05126747.1| UbiA prenyltransferase [gamma pr... 36.6 1.3
gi|343921262|gb|EGV31983.1| 1,4-dihydroxy-2-naphthoate octapreny... 35.8 2.1
gi|327310902|ref|YP_004337799.1| prenyltransferase [Thermoproteu... 35.0 3.7
gi|312129981|ref|YP_003997321.1| 1,4-dihydroxy-2-naphtoate preny... 33.9 8.8
>gi|15607612|ref|NP_214985.1| hypothetical protein Rv0471c [Mycobacterium tuberculosis H37Rv]
gi|15839860|ref|NP_334897.1| hypothetical protein MT0488 [Mycobacterium tuberculosis CDC1551]
gi|31791651|ref|NP_854144.1| hypothetical protein Mb0481c [Mycobacterium bovis AF2122/97]
60 more sequence titles
Length=162
Score = 321 bits (823), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE
Sbjct 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
Query 61 PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT
Sbjct 61 PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
Query 121 PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC
Sbjct 121 PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
>gi|289441853|ref|ZP_06431597.1| hypothetical protein TBLG_02596 [Mycobacterium tuberculosis T46]
gi|289748961|ref|ZP_06508339.1| hypothetical protein TBDG_01505 [Mycobacterium tuberculosis T92]
gi|289414772|gb|EFD12012.1| hypothetical protein TBLG_02596 [Mycobacterium tuberculosis T46]
gi|289689548|gb|EFD56977.1| hypothetical protein TBDG_01505 [Mycobacterium tuberculosis T92]
Length=162
Score = 320 bits (820), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 161/162 (99%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE
Sbjct 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
Query 61 PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
PGLDWRWLVLWW+SHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT
Sbjct 61 PGLDWRWLVLWWKSHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
Query 121 PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC
Sbjct 121 PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
>gi|289446014|ref|ZP_06435758.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418972|gb|EFD16173.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=162
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/162 (99%), Positives = 161/162 (99%), Gaps = 0/162 (0%)
Query 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE
Sbjct 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
Query 61 PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT
Sbjct 61 PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
Query 121 PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
PRRTTSCGSP RALEPTTPRWARAVGRSCWRRSPTGCCAPRC
Sbjct 121 PRRTTSCGSPARALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
>gi|306806281|ref|ZP_07442949.1| hypothetical protein TMGG_03480 [Mycobacterium tuberculosis SUMu007]
gi|306966477|ref|ZP_07479138.1| hypothetical protein TMIG_01365 [Mycobacterium tuberculosis SUMu009]
gi|308347290|gb|EFP36141.1| hypothetical protein TMGG_03480 [Mycobacterium tuberculosis SUMu007]
gi|308355873|gb|EFP44724.1| hypothetical protein TMIG_01365 [Mycobacterium tuberculosis SUMu009]
Length=162
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/162 (99%), Positives = 161/162 (99%), Gaps = 0/162 (0%)
Query 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE
Sbjct 1 MPDAGAGSRLRSWAYALRTTNPPADGPTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGE 60
Query 61 PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT
Sbjct 61 PGLDWRWLVLWWESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTT 120
Query 121 PRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
RRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC
Sbjct 121 LRRTTSCGSPERALEPTTPRWARAVGRSCWRRSPTGCCAPRC 162
>gi|289568390|ref|ZP_06448617.1| hypothetical protein TBJG_03494 [Mycobacterium tuberculosis T17]
gi|289542143|gb|EFD45792.1| hypothetical protein TBJG_03494 [Mycobacterium tuberculosis T17]
Length=136
Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 27 PTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGEPGLDWRWLVLWWESHAPHIANNLMND 86
PTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGEPGLDWRWLVLWW+SHAPHIANNLMND
Sbjct 1 PTDTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGEPGLDWRWLVLWWKSHAPHIANNLMND 60
Query 87 LYDTDVGTDSATYARARYAQHPAATGANRAAYTTPRRTTSCGSPERALEPTTPRWARAVG 146
LYDTDVGTDSATYARARYAQHPAATGANRAAYTTPRRTTSCGSPERALEPTTPRWARAVG
Sbjct 61 LYDTDVGTDSATYARARYAQHPAATGANRAAYTTPRRTTSCGSPERALEPTTPRWARAVG 120
Query 147 RSCWRRSPTGCCAPRC 162
RSCWRRSPTGCCAPRC
Sbjct 121 RSCWRRSPTGCCAPRC 136
>gi|320159719|ref|YP_004172943.1| putative prenyltransferase [Anaerolinea thermophila UNI-1]
gi|319993572|dbj|BAJ62343.1| putative prenyltransferase [Anaerolinea thermophila UNI-1]
Length=335
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/85 (42%), Positives = 45/85 (53%), Gaps = 1/85 (1%)
Query 29 DTVTRWLVVTRAAVLPMTLVSGLVAGLLAIGEPGLDWRWLVLWWESHA-PHIANNLMNDL 87
D ++RWL+ TRAAVL MT S + GLLA + + +L H NNL+NDL
Sbjct 27 DVISRWLISTRAAVLIMTFTSATIGGLLAARDGKFNLVLWLLVALGLVLAHALNNLLNDL 86
Query 88 YDTDVGTDSATYARARYAQHPAATG 112
D + G D Y RA+Y HP G
Sbjct 87 TDYERGIDENNYFRAQYGPHPLQQG 111
>gi|88706563|ref|ZP_01104267.1| UbiA prenyltransferase [Congregibacter litoralis KT71]
gi|88699275|gb|EAQ96390.1| UbiA prenyltransferase [Congregibacter litoralis KT71]
Length=329
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (42%), Positives = 45/85 (53%), Gaps = 7/85 (8%)
Query 32 TRWLVVTRAAVLPMTLVSGLVAGLLA----IGEPGLDWRWLVLWWESHAPHIANNLMNDL 87
RWL+ R++VL MTL+S + GLLA G+ GL WL+ H NNL+NDL
Sbjct 29 VRWLLAVRSSVLFMTLMSATLGGLLAWREGAGDLGL---WLLCMLGLMLAHATNNLLNDL 85
Query 88 YDTDVGTDSATYARARYAQHPAATG 112
D+ G DS Y R +Y H G
Sbjct 86 TDSARGVDSGNYYRNQYGIHVLEDG 110
>gi|88798571|ref|ZP_01114155.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Reinekea sp.
MED297]
gi|88778671|gb|EAR09862.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Reinekea sp.
MED297]
Length=333
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (38%), Positives = 39/83 (47%), Gaps = 1/83 (1%)
Query 31 VTRWLVVTRAAVLPMTLVSGLVAGLLAIGEPGLDWRWLVLWWESHA-PHIANNLMNDLYD 89
+ RW + +R+AV MTL S L+ LLA+ DW VL H NNL+ND D
Sbjct 32 LKRWFIASRSAVFIMTLFSALIGLLLAVPAATFDWLNAVLVTIGLVLAHATNNLINDWTD 91
Query 90 TDVGTDSATYARARYAQHPAATG 112
G D Y R +Y P G
Sbjct 92 YRKGVDRDNYFRTQYGPQPLEAG 114
>gi|39997062|ref|NP_953013.1| hypothetical protein GSU1964 [Geobacter sulfurreducens PCA]
gi|39983952|gb|AAR35340.1| hypothetical protein GSU1964 [Geobacter sulfurreducens PCA]
Length=360
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 1/44 (2%)
Query 71 WWESHAPHIANNL-MNDLYDTDVGTDSATYARARYAQHPAATGA 113
+++ H HIANN+ N L+ DVGTD+ R R +H A +G
Sbjct 117 YYDIHMRHIANNVDHNRLFLIDVGTDTLEIGRQRIEEHNAGSGV 160
>gi|298251774|ref|ZP_06975577.1| ATPase associated with various cellular activities AAA_5 [Ktedonobacter
racemifer DSM 44963]
gi|297546366|gb|EFH80234.1| ATPase associated with various cellular activities AAA_5 [Ktedonobacter
racemifer DSM 44963]
Length=786
Score = 37.4 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 27/85 (32%), Positives = 38/85 (45%), Gaps = 9/85 (10%)
Query 61 PGLD----WRWLVLWW----ESHAPHIANNLMNDLYDTDVGTDSATYARARYAQHPAATG 112
PGLD W +W E + AN L+ + +D+ TDS+T A R + +
Sbjct 214 PGLDFIPYWSEFFFYWVLQQEQSSKAGANTLIKEDDPSDLLTDSSTQA-GRVQERSSDWS 272
Query 113 ANRAAYTTPRRTTSCGSPERALEPT 137
N+ YTTP T P L+PT
Sbjct 273 GNKEGYTTPSFDTKLIIPNEPLKPT 297
>gi|254514686|ref|ZP_05126747.1| UbiA prenyltransferase [gamma proteobacterium NOR5-3]
gi|219676929|gb|EED33294.1| UbiA prenyltransferase [gamma proteobacterium NOR5-3]
Length=288
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (43%), Positives = 19/35 (55%), Gaps = 0/35 (0%)
Query 78 HIANNLMNDLYDTDVGTDSATYARARYAQHPAATG 112
H NNL+NDL D+ G D+ Y R +Y H G
Sbjct 35 HATNNLLNDLTDSSRGIDAGNYYRNQYGVHVLEDG 69
>gi|343921262|gb|EGV31983.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Thiorhodococcus
drewsii AZ1]
Length=306
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/69 (38%), Positives = 38/69 (56%), Gaps = 4/69 (5%)
Query 31 VTRWLVVTRAAVLPMTLVSGLVAGL-LAIGEPGLDWRWLVL--WWESHAPHIANNLMNDL 87
+TRW+ R LP+T V+ +VAG+ +A+ E G W+ L + A I NL ND
Sbjct 20 LTRWIAAARPKTLPLT-VTPVVAGIAIAVAETGSLSLWIALCTLLGAVAIQIGTNLYNDA 78
Query 88 YDTDVGTDS 96
D + GTD+
Sbjct 79 SDFERGTDT 87
>gi|327310902|ref|YP_004337799.1| prenyltransferase [Thermoproteus uzoniensis 768-20]
gi|326947381|gb|AEA12487.1| prenyltransferase [Thermoproteus uzoniensis 768-20]
Length=294
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/51 (38%), Positives = 26/51 (51%), Gaps = 5/51 (9%)
Query 78 HIANNLMNDLYDTDVGTDSATYARARYAQHPAATGANRAAYTTPRRTTSCG 128
H A N++ND YDT G D+ T A Y HP +G +PR+ + G
Sbjct 53 HAAVNVINDYYDTIRGVDTPTSPTALYRPHPLLSG-----LFSPRQALAVG 98
>gi|312129981|ref|YP_003997321.1| 1,4-dihydroxy-2-naphtoate prenyltransferase [Leadbetterella byssophila
DSM 17132]
gi|311906527|gb|ADQ16968.1| 1,4-dihydroxy-2-naphtoate prenyltransferase [Leadbetterella byssophila
DSM 17132]
Length=292
Score = 33.9 bits (76), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/70 (32%), Positives = 33/70 (48%), Gaps = 5/70 (7%)
Query 31 VTRWLVVTRAAVLPMTLVSGLVAGLLAIGEPGLDWRWLVLWWE---SHAPHIANNLMNDL 87
+ +W+ R LP+ L S L+ G LA + +RW V W + + +N ND
Sbjct 1 MKKWISAARLRTLPLALSSILMGGFLA--QSVFMFRWDVFLWAVITTILLQVMSNFANDY 58
Query 88 YDTDVGTDSA 97
DT G DS+
Sbjct 59 GDTQNGADSS 68
Lambda K H
0.319 0.131 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130518307686
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40