BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0474

Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607615|ref|NP_214988.1|  transcriptional regulatory protein ...   282    1e-74
gi|289752506|ref|ZP_06511884.1|  transcriptional regulator [Mycob...   279    9e-74
gi|41410065|ref|NP_962901.1|  hypothetical protein MAP3967 [Mycob...   239    1e-61
gi|240169857|ref|ZP_04748516.1|  transcriptional regulatory prote...   236    1e-60
gi|183980823|ref|YP_001849114.1|  transcriptional regulatory prot...   235    2e-60
gi|254819802|ref|ZP_05224803.1|  transcriptional regulator, XRE f...   231    4e-59
gi|342859024|ref|ZP_08715678.1|  transcriptional regulatory prote...   228    2e-58
gi|118619637|ref|YP_907969.1|  transcriptional regulatory protein...   226    6e-58
gi|296168076|ref|ZP_06850142.1|  PbsX family transcriptional regu...   222    1e-56
gi|333989102|ref|YP_004521716.1|  transcriptional regulator [Myco...   202    1e-50
gi|108797622|ref|YP_637819.1|  XRE family transcriptional regulat...   201    4e-50
gi|120401822|ref|YP_951651.1|  XRE family transcriptional regulat...   196    7e-49
gi|118467518|ref|YP_885321.1|  XRE family transcriptional regulat...   194    2e-48
gi|145220707|ref|YP_001131385.1|  XRE family transcriptional regu...   186    7e-46
gi|169631162|ref|YP_001704811.1|  transcriptional regulator [Myco...   179    2e-43
gi|333918282|ref|YP_004491863.1|  XRE family transcriptional regu...   175    3e-42
gi|262200774|ref|YP_003271982.1|  transcriptional regulator [Gord...   167    6e-40
gi|326384044|ref|ZP_08205727.1|  helix-turn-helix domain-containi...   165    2e-39
gi|312141149|ref|YP_004008485.1|  transcriptional regulator [Rhod...   163    8e-39
gi|229490145|ref|ZP_04383992.1|  transcriptional regulator, XRE f...   163    1e-38
gi|226305077|ref|YP_002765035.1|  Xre family DNA-binding protein ...   163    1e-38
gi|343925752|ref|ZP_08765267.1|  putative Xre family DNA-binding ...   162    2e-38
gi|111019098|ref|YP_702070.1|  transcriptional regulator [Rhodoco...   161    3e-38
gi|226361238|ref|YP_002779016.1|  Xre family DNA-binding protein ...   161    4e-38
gi|296141333|ref|YP_003648576.1|  XRE family transcriptional regu...   159    1e-37
gi|54027183|ref|YP_121425.1|  putative DNA-binding protein [Nocar...   158    2e-37
gi|324997738|ref|ZP_08118850.1|  XRE family transcriptional regul...   154    6e-36
gi|319948667|ref|ZP_08022789.1|  transcriptional regulator [Dietz...   153    9e-36
gi|331694466|ref|YP_004330705.1|  helix-turn-helix domain-contain...   153    9e-36
gi|134103416|ref|YP_001109077.1|  XRE family transcriptional regu...   150    5e-35
gi|300782359|ref|YP_003762650.1|  XRE family transcriptional regu...   148    2e-34
gi|284028971|ref|YP_003378902.1|  XRE family transcriptional regu...   148    3e-34
gi|302523789|ref|ZP_07276131.1|  transcriptional regulator [Strep...   147    4e-34
gi|256380757|ref|YP_003104417.1|  XRE family transcriptional regu...   145    2e-33
gi|312200129|ref|YP_004020190.1|  hypothetical protein FraEuI1c_6...   143    1e-32
gi|336120380|ref|YP_004575165.1|  putative Xre family DNA binding...   142    1e-32
gi|336179894|ref|YP_004585269.1|  helix-turn-helix domain-contain...   141    3e-32
gi|257054325|ref|YP_003132157.1|  Helix-turn-helix protein [Sacch...   141    3e-32
gi|269124926|ref|YP_003298296.1|  XRE family transcriptional regu...   141    3e-32
gi|86739175|ref|YP_479575.1|  XRE family transcriptional regulato...   140    7e-32
gi|111220424|ref|YP_711218.1|  putative DNA-binding protein [Fran...   140    7e-32
gi|311896864|dbj|BAJ29272.1|  putative transcriptional regulator ...   139    2e-31
gi|345008313|ref|YP_004810667.1|  helix-turn-helix domain-contain...   138    3e-31
gi|288923632|ref|ZP_06417738.1|  transcriptional regulator, XRE f...   138    3e-31
gi|302543610|ref|ZP_07295952.1|  PbsX family transcriptional regu...   137    4e-31
gi|328883993|emb|CCA57232.1|  Transcriptional regulator, XRE fami...   137    5e-31
gi|158317899|ref|YP_001510407.1|  XRE family transcriptional regu...   137    6e-31
gi|302535844|ref|ZP_07288186.1|  DNA-binding protein [Streptomyce...   136    8e-31
gi|297193564|ref|ZP_06910962.1|  DNA-binding protein [Streptomyce...   136    1e-30
gi|317508728|ref|ZP_07966381.1|  hypothetical protein HMPREF9336_...   135    2e-30


>gi|15607615|ref|NP_214988.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15839863|ref|NP_334900.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|31791654|ref|NP_854147.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=140

 Score =  282 bits (722),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF
Sbjct  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120

Query  121  THQNEATREECPSDPTPTDD  140
            THQNEATREECPSDPTPTDD
Sbjct  121  THQNEATREECPSDPTPTDD  140


>gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289693093|gb|EFD60522.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
Length=140

 Score =  279 bits (714),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 139/140 (99%), Positives = 139/140 (99%), Gaps = 0/140 (0%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF
Sbjct  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120

Query  121  THQNEATREECPSDPTPTDD  140
            THQNEATREEC SDPTPTDD
Sbjct  121  THQNEATREECLSDPTPTDD  140


>gi|41410065|ref|NP_962901.1| hypothetical protein MAP3967 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463985|ref|YP_883804.1| XRE family transcriptional regulator [Mycobacterium avium 104]
 gi|254777113|ref|ZP_05218629.1| transcriptional regulator, XRE family protein [Mycobacterium 
avium subsp. avium ATCC 25291]
 gi|41398898|gb|AAS06517.1| hypothetical protein MAP_3967 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|48928160|gb|AAT47758.1| possible transcriptional regulator [Mycobacterium avium]
 gi|118165272|gb|ABK66169.1| transcriptional regulator, XRE family protein [Mycobacterium 
avium 104]
 gi|336460417|gb|EGO39315.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=138

 Score =  239 bits (609),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 117/135 (87%), Positives = 126/135 (94%), Gaps = 0/135 (0%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M+ EEKL+AKVS  ASD+ASDIGSFIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct  1    MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK  60

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPS+ SQVRDAI+TDTAITERQKQILLDIYASF
Sbjct  61   PSADVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASF  120

Query  121  THQNEATREECPSDP  135
            T QNEAT EECP+ P
Sbjct  121  TQQNEATHEECPTQP  135


>gi|240169857|ref|ZP_04748516.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 
12478]
Length=138

 Score =  236 bits (601),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 122/140 (88%), Positives = 127/140 (91%), Gaps = 2/140 (1%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M  EEK  AKVS+  S  ASDIGSFIR+QRETA VSMRQLAERSGVSNPYLSQVERGLRK
Sbjct  1    MPPEEKFGAKVSSVTSR-ASDIGSFIRTQRETAQVSMRQLAERSGVSNPYLSQVERGLRK  59

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYA+F
Sbjct  60   PSADVLAQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYAAF  119

Query  121  THQNEATREECPSDPTPTDD  140
            THQNEATREEC S P+  DD
Sbjct  120  THQNEATREEC-SSPSDIDD  138


>gi|183980823|ref|YP_001849114.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183174149|gb|ACC39259.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=138

 Score =  235 bits (599),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 121/140 (87%), Positives = 125/140 (90%), Gaps = 2/140 (1%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M  EEKL AKVS  +S  ASDIGSFIR+QRE AHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct  1    MPGEEKLGAKVSAVSSK-ASDIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK  59

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPSETSQVRD IITDTAITERQKQILLDIYASF
Sbjct  60   PSADVLAQIAKALRVSAEVLYVRAGILEPSETSQVRDVIITDTAITERQKQILLDIYASF  119

Query  121  THQNEATREECPSDPTPTDD  140
            T QNEA REEC S P+  DD
Sbjct  120  TQQNEAVREEC-SSPSEIDD  138


>gi|254819802|ref|ZP_05224803.1| transcriptional regulator, XRE family protein [Mycobacterium 
intracellulare ATCC 13950]
Length=138

 Score =  231 bits (588),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 113/131 (87%), Positives = 123/131 (94%), Gaps = 0/131 (0%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M+ EEKL+AKVS  ASD+ASDIGSFIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct  1    MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK  60

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEP++ SQVRDAI+TDTAITERQKQILLDIYASF
Sbjct  61   PSADVLNQIAKALRVSAEVLYVRAGILEPTDKSQVRDAIVTDTAITERQKQILLDIYASF  120

Query  121  THQNEATREEC  131
            T QNE+T EEC
Sbjct  121  TQQNESTDEEC  131


>gi|342859024|ref|ZP_08715678.1| transcriptional regulatory protein [Mycobacterium colombiense 
CECT 3035]
 gi|342133265|gb|EGT86468.1| transcriptional regulatory protein [Mycobacterium colombiense 
CECT 3035]
Length=138

 Score =  228 bits (581),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 112/134 (84%), Positives = 125/134 (94%), Gaps = 0/134 (0%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M+ EEKL+AKVS  AS+VASDIGSFIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct  1    MTPEEKLSAKVSNAASEVASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK  60

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPS+ SQVRDAI+TDTAITERQKQILLDIY+SF
Sbjct  61   PSADVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYSSF  120

Query  121  THQNEATREECPSD  134
            T QNE+ +EE P++
Sbjct  121  TQQNESIQEESPTE  134


>gi|118619637|ref|YP_907969.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118571747|gb|ABL06498.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=138

 Score =  226 bits (577),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 119/140 (85%), Positives = 123/140 (88%), Gaps = 2/140 (1%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M  EEKL AKVS  +S  ASDIGSFIR+QRE AHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct  1    MPGEEKLGAKVSAVSSK-ASDIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK  59

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPSETSQVRD IITDTAITERQKQILLDIYASF
Sbjct  60   PSADVLAQIAKALRVSAEVLYVRAGILEPSETSQVRDVIITDTAITERQKQILLDIYASF  119

Query  121  THQNEATREECPSDPTPTDD  140
            T QNEA  EE  S P+  DD
Sbjct  120  TQQNEAVCEEY-SSPSEIDD  138


>gi|296168076|ref|ZP_06850142.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896883|gb|EFG76511.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=142

 Score =  222 bits (566),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 110/139 (80%), Positives = 125/139 (90%), Gaps = 3/139 (2%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M+ EEKL+AKVS  ASD+ASDIG FIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct  1    MAPEEKLSAKVSNAASDMASDIGGFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK  60

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSA+VL+QIAKALRVSAEVLYVRAGILEPS+ SQVRDAIITDTAITERQKQ+LLD+Y SF
Sbjct  61   PSAEVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIITDTAITERQKQVLLDVYTSF  120

Query  121  THQNEA---TREECPSDPT  136
            T QNEA   ++EEC ++ +
Sbjct  121  TQQNEAAESSKEECSTESS  139


>gi|333989102|ref|YP_004521716.1| transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333485070|gb|AEF34462.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=130

 Score =  202 bits (514),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 100/131 (77%), Positives = 114/131 (88%), Gaps = 4/131 (3%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            MS ++KLAA VST     A+DIGSFIR+QRE A VSMRQLA+++GVSNPYLSQ+ERGLRK
Sbjct  1    MSQDDKLAAVVST----AAADIGSFIRAQREAAQVSMRQLADKAGVSNPYLSQIERGLRK  56

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLY+RAGILEPSE S+VRDA+I+D AITERQKQ+LLDIY SF
Sbjct  57   PSADVLNQIAKALRVSAEVLYIRAGILEPSEKSEVRDAVISDAAITERQKQVLLDIYTSF  116

Query  121  THQNEATREEC  131
              QNEA  EE 
Sbjct  117  VQQNEADGEET  127


>gi|108797622|ref|YP_637819.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866709|ref|YP_936661.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433246|ref|YP_001068937.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768041|gb|ABG06763.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119692798|gb|ABL89871.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126233046|gb|ABN96446.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
Length=161

 Score =  201 bits (510),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 101/136 (75%), Positives = 113/136 (84%), Gaps = 4/136 (2%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            MS +E LAA V+    + A DIGSFIRSQRE A VS+RQLAE++GVSNPYLSQ+ERGLRK
Sbjct  1    MSQDENLAAVVT----NAAQDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK  56

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPSE  QVRDAI++DTAITERQKQ+LLDIY SF
Sbjct  57   PSADVLNQIAKALRVSAEVLYVRAGILEPSEAGQVRDAILSDTAITERQKQVLLDIYTSF  116

Query  121  THQNEATREECPSDPT  136
              QNE    E   +PT
Sbjct  117  CQQNEVAGSEVDEEPT  132


>gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii 
PYR-1]
 gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii 
PYR-1]
Length=176

 Score =  196 bits (499),  Expect = 7e-49, Method: Compositional matrix adjust.
 Identities = 99/133 (75%), Positives = 112/133 (85%), Gaps = 4/133 (3%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M  +E LAA +S+     A DIGSFIR+QRE A VS+RQLAE++GVSNPYLSQ+ERGLRK
Sbjct  1    MPQDENLAAVMSS----AAQDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK  56

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPSET++VRDAI+TDTAI ERQKQ+LLDIY SF
Sbjct  57   PSADVLNQIAKALRVSAEVLYVRAGILEPSETNEVRDAIVTDTAINERQKQVLLDIYTSF  116

Query  121  THQNEATREECPS  133
              QNEA   E  S
Sbjct  117  CQQNEAVLAEAVS  129


>gi|118467518|ref|YP_885321.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118168805|gb|ABK69701.1| transcriptional regulator, XRE family protein [Mycobacterium 
smegmatis str. MC2 155]
Length=142

 Score =  194 bits (494),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 99/140 (71%), Positives = 114/140 (82%), Gaps = 4/140 (2%)

Query  1    MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK  60
            M+ +E LAA VS    + A DIGSFIR+QRE A VS+RQLAE++GVSNPYLSQ+ERGLRK
Sbjct  1    MAQDENLAAVVS----NAAQDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK  56

Query  61   PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            PSADVL+QIAKALRVSAEVLYVRAGILEPSE S+VRDAI+ D +ITERQKQ+LLDIY SF
Sbjct  57   PSADVLNQIAKALRVSAEVLYVRAGILEPSEPSEVRDAIVNDVSITERQKQVLLDIYTSF  116

Query  121  THQNEATREECPSDPTPTDD  140
              QNEA  E   +   P+ D
Sbjct  117  RQQNEAAGEPEGAAVIPSPD  136


>gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
 gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
 gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK]
 gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
Length=182

 Score =  186 bits (473),  Expect = 7e-46, Method: Compositional matrix adjust.
 Identities = 92/121 (77%), Positives = 105/121 (87%), Gaps = 4/121 (3%)

Query  4    EEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSA  63
            +E LAA VS    + A DIGSFIRSQRE A VS+RQLAE++GVSNPYLSQ+ERGLRKPSA
Sbjct  7    DENLAAVVS----NAAQDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSA  62

Query  64   DVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQ  123
            DVL+QIAKALRVSAEVLY++AGILEP +T++VRDAIITD AI ERQKQ+LLDIY SF  Q
Sbjct  63   DVLNQIAKALRVSAEVLYIQAGILEPGDTNEVRDAIITDMAINERQKQVLLDIYTSFCQQ  122

Query  124  N  124
            N
Sbjct  123  N  123


>gi|169631162|ref|YP_001704811.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977]
 gi|169243129|emb|CAM64157.1| Possible transcriptional regulator [Mycobacterium abscessus]
Length=139

 Score =  179 bits (453),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 89/125 (72%), Positives = 106/125 (85%), Gaps = 1/125 (0%)

Query  11   VSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIA  70
            ++T  S+ ASDIG FIR+QRE A VS+RQLAE++GVSNPYLSQ+ERGLR+PSA+VL+QIA
Sbjct  7    LATAVSNAASDIGGFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRRPSAEVLNQIA  66

Query  71   KALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN-EATRE  129
            KALRVSAEVLYVRAGIL+ S+ S VRDAII DT ITERQKQ+LLD+Y+SF  QN EA  +
Sbjct  67   KALRVSAEVLYVRAGILDRSDASPVRDAIIADTFITERQKQVLLDVYSSFVQQNAEAQSD  126

Query  130  ECPSD  134
               SD
Sbjct  127  VAESD  131


>gi|333918282|ref|YP_004491863.1| XRE family transcriptional regulator [Amycolicicoccus subflavus 
DQS3-9A1]
 gi|333480503|gb|AEF39063.1| Transcriptional regulator, XRE family [Amycolicicoccus subflavus 
DQS3-9A1]
Length=191

 Score =  175 bits (443),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 81/114 (72%), Positives = 98/114 (86%), Gaps = 0/114 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            S+ A DIGSFIR+QRE A VS+RQLAER+GVSNPYLSQ+ERGLRKPSA+VL QIAK LRV
Sbjct  78   SNAAQDIGSFIRAQRELAQVSLRQLAERAGVSNPYLSQIERGLRKPSAEVLGQIAKGLRV  137

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATRE  129
            SAE LYVRAGILE  ++S VRDA++ D  + ERQKQ++L+IY SF H+NEA++E
Sbjct  138  SAEALYVRAGILEQRQSSPVRDAVLADATLNERQKQVILEIYNSFCHENEASQE  191


>gi|262200774|ref|YP_003271982.1| transcriptional regulator [Gordonia bronchialis DSM 43247]
 gi|262084121|gb|ACY20089.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
Length=141

 Score =  167 bits (422),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 82/114 (72%), Positives = 94/114 (83%), Gaps = 0/114 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            ++ A DIG+FIRSQR  A VS+RQLAER+GVSNPYLSQ+ERGLRKPSADVL+QIAK LRV
Sbjct  27   ANAAQDIGAFIRSQRVAAEVSLRQLAERAGVSNPYLSQIERGLRKPSADVLAQIAKGLRV  86

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATRE  129
            SAEVLYVRAGILE    S VRDA+I D +I ERQKQ+LL+IY SF  +N A  E
Sbjct  87   SAEVLYVRAGILEERPASPVRDALIADDSINERQKQMLLEIYDSFRKENAAADE  140


>gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis 
NRRL B-59395]
 gi|326197204|gb|EGD54395.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis 
NRRL B-59395]
Length=156

 Score =  165 bits (418),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 80/109 (74%), Positives = 94/109 (87%), Gaps = 0/109 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            ++ A DIG FIRSQR +A VS+RQLAER+GVSNPYLSQ+ERGLRKPSADVLSQIAK LRV
Sbjct  21   ANAAQDIGEFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERGLRKPSADVLSQIAKGLRV  80

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            SAEVLYVRAGILE    S VRDA++ D++I+ERQKQ+LL+IY SF  +N
Sbjct  81   SAEVLYVRAGILEARPASPVRDALLADSSISERQKQMLLEIYDSFRREN  129


>gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325674029|ref|ZP_08153719.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 
33707]
 gi|311890488|emb|CBH49806.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325555294|gb|EGD24966.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 
33707]
Length=155

 Score =  163 bits (413),  Expect = 8e-39, Method: Compositional matrix adjust.
 Identities = 85/133 (64%), Positives = 102/133 (77%), Gaps = 3/133 (2%)

Query  8    AAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLS  67
            AA+V   A   A DIGSFIRSQRE A VS+RQLA+ +GVSNPYLSQ+ERGLRKPSADVL+
Sbjct  11   AARVVAGA---AQDIGSFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERGLRKPSADVLA  67

Query  68   QIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEAT  127
            QIAK LRVS+EVLYV+AGILE    S VRDA++ D AITERQKQ+LL+IY SF  +N+  
Sbjct  68   QIAKGLRVSSEVLYVQAGILEQRPHSPVRDALLADGAITERQKQVLLEIYESFRRENDPH  127

Query  128  REECPSDPTPTDD  140
            + E       +D+
Sbjct  128  QSESADQADASDE  140


>gi|229490145|ref|ZP_04383992.1| transcriptional regulator, XRE family [Rhodococcus erythropolis 
SK121]
 gi|229322893|gb|EEN88667.1| transcriptional regulator, XRE family [Rhodococcus erythropolis 
SK121]
Length=168

 Score =  163 bits (412),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 78/113 (70%), Positives = 94/113 (84%), Gaps = 0/113 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            S  A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSADVL+QIAK LRV
Sbjct  31   SSAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRV  90

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATR  128
            S+EVLYV+AG LE    S +RDA++ +TAI ERQKQ+LL+IY SF  +NE++R
Sbjct  91   SSEVLYVQAGYLEQRPHSPIRDAVLAETAINERQKQVLLEIYDSFCRENESSR  143


>gi|226305077|ref|YP_002765035.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226184192|dbj|BAH32296.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis 
PR4]
Length=168

 Score =  163 bits (412),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 78/113 (70%), Positives = 94/113 (84%), Gaps = 0/113 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            S  A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSADVL+QIAK LRV
Sbjct  31   SSAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRV  90

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATR  128
            S+EVLYV+AG LE    S +RDA++ +TAI ERQKQ+LL+IY SF  +NE++R
Sbjct  91   SSEVLYVQAGYLEQRPHSPIRDAVLAETAINERQKQVLLEIYDSFCRENESSR  143


>gi|343925752|ref|ZP_08765267.1| putative Xre family DNA-binding protein [Gordonia alkanivorans 
NBRC 16433]
 gi|343764103|dbj|GAA12193.1| putative Xre family DNA-binding protein [Gordonia alkanivorans 
NBRC 16433]
Length=177

 Score =  162 bits (409),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 89/104 (86%), Gaps = 0/104 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            DIG+FIRSQR  A VS+RQL+ER+GVSNPYLSQ+ERGLRKPSADVL+QIAK LRVSAEVL
Sbjct  59   DIGAFIRSQRVAAKVSLRQLSERAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSAEVL  118

Query  81   YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            YVRAGILE    S VRDA+I D +I ERQKQ+LL+IY SF  +N
Sbjct  119  YVRAGILEERPASPVRDALIADDSINERQKQMLLEIYESFRKEN  162


>gi|111019098|ref|YP_702070.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110818628|gb|ABG93912.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=168

 Score =  161 bits (407),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 77/111 (70%), Positives = 92/111 (83%), Gaps = 0/111 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            S+ A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSA+VL QIAK LRV
Sbjct  20   SNAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSAEVLGQIAKGLRV  79

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEA  126
            S+EVLYV+AG LE      +RDA++ DTAITERQKQ+LL+IY SF  +NE+
Sbjct  80   SSEVLYVQAGYLEQRPHGPLRDALLADTAITERQKQVLLEIYESFCRENES  130


>gi|226361238|ref|YP_002779016.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226239723|dbj|BAH50071.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
Length=168

 Score =  161 bits (407),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 77/111 (70%), Positives = 92/111 (83%), Gaps = 0/111 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            S+ A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSA+VL QIAK LRV
Sbjct  20   SNAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSAEVLGQIAKGLRV  79

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEA  126
            S+EVLYV+AG LE      +RDA++ DTAITERQKQ+LL+IY SF  +NE+
Sbjct  80   SSEVLYVQAGYLEQRPHGPLRDALLADTAITERQKQVLLEIYESFCRENES  130


>gi|296141333|ref|YP_003648576.1| XRE family transcriptional regulator [Tsukamurella paurometabola 
DSM 20162]
 gi|296029467|gb|ADG80237.1| transcriptional regulator, XRE family [Tsukamurella paurometabola 
DSM 20162]
Length=128

 Score =  159 bits (402),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 79/113 (70%), Positives = 92/113 (82%), Gaps = 0/113 (0%)

Query  22   IGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVLY  81
            +G FIR+QR  A VS+RQLAE++GVSNPYLSQ+ERGLR+PSADVL QIAKALR+SAEVLY
Sbjct  16   LGEFIRAQRIAAEVSIRQLAEKAGVSNPYLSQIERGLRRPSADVLGQIAKALRLSAEVLY  75

Query  82   VRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSD  134
            V+AGILE    S VRDA+I DTAITERQKQ LL+IY SF  +NE   +E   D
Sbjct  76   VQAGILEERPESPVRDALIADTAITERQKQALLEIYESFRRENETALKEINHD  128


>gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54018691|dbj|BAD60061.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
Length=136

 Score =  158 bits (400),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 76/111 (69%), Positives = 91/111 (82%), Gaps = 0/111 (0%)

Query  14   KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL  73
            + ++ A DIG FIR+QRE A VS+RQLA  +GVSNPYLSQ+ERGLR PSA+VL+QIAKAL
Sbjct  9    RVANAAHDIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKAL  68

Query  74   RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            RVS+EVLYVRAG LE      VRDA++ DT+ITERQKQ+LLDIY SF  +N
Sbjct  69   RVSSEVLYVRAGYLEQRPHGPVRDALLADTSITERQKQVLLDIYESFRREN  119


>gi|324997738|ref|ZP_08118850.1| XRE family transcriptional regulator [Pseudonocardia sp. P1]
Length=163

 Score =  154 bits (388),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 72/104 (70%), Positives = 86/104 (83%), Gaps = 0/104 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            DIGS+IRSQRE A VSMRQLA  +GVSNPYLSQVERGLRKPSA++L QIAK LR+SAE L
Sbjct  46   DIGSYIRSQREAAQVSMRQLARSAGVSNPYLSQVERGLRKPSAEILQQIAKGLRISAEAL  105

Query  81   YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            YVRAGILE     +V DA++TD  ++ERQK++LLD+Y SF  +N
Sbjct  106  YVRAGILEERPAGKVTDAVLTDPTLSERQKRVLLDVYESFRREN  149


>gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4]
 gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4]
Length=176

 Score =  153 bits (386),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 73/104 (71%), Positives = 88/104 (85%), Gaps = 0/104 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            DIGSFIR+QRE A VS+RQLAER+GVSNPYLSQ+ERGLRKPSA+VL QIA+ LR+SAEVL
Sbjct  62   DIGSFIRAQREAAQVSIRQLAERAGVSNPYLSQIERGLRKPSAEVLGQIARGLRLSAEVL  121

Query  81   YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            Y RAGILE  + S VRDAI+T   +TERQ+++L++IY SF   N
Sbjct  122  YARAGILELKQGSPVRDAILTAPDLTERQREVLVEIYESFLANN  165


>gi|331694466|ref|YP_004330705.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans 
CB1190]
 gi|326949155|gb|AEA22852.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans 
CB1190]
Length=149

 Score =  153 bits (386),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 74/121 (62%), Positives = 92/121 (77%), Gaps = 0/121 (0%)

Query  5    EKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD  64
            EK   +V         DIGS+IRSQRE+A VS+RQLA+ +GVSNPYLSQVERGLRKPSA+
Sbjct  12   EKAVEQVGQAVGQAVDDIGSYIRSQRESAQVSLRQLAKVTGVSNPYLSQVERGLRKPSAE  71

Query  65   VLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            +L QIAK LR+SAE LYV+AGIL+    S V DA++ D  +TERQKQ+LLDIY SF  ++
Sbjct  72   ILQQIAKGLRISAEALYVKAGILDERPASAVTDAVLADPLLTERQKQVLLDIYQSFRRES  131

Query  125  E  125
            +
Sbjct  132  D  132


>gi|134103416|ref|YP_001109077.1| XRE family transcriptional regulator [Saccharopolyspora erythraea 
NRRL 2338]
 gi|291006044|ref|ZP_06564017.1| XRE family transcriptional regulator [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133916039|emb|CAM06152.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea 
NRRL 2338]
Length=148

 Score =  150 bits (380),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 71/116 (62%), Positives = 91/116 (79%), Gaps = 0/116 (0%)

Query  5    EKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD  64
            E++   V+   +   SD+G++IR+QR  A +S+RQLA+R+GVSNPYLSQVERGLRKPSA+
Sbjct  2    ERVDKTVNKAVNQAVSDLGAYIRTQRGNAQISLRQLAKRAGVSNPYLSQVERGLRKPSAE  61

Query  65   VLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF  120
            +L QIAKALR+SAE LYV+AGILE  E   V DAI+ D  + ERQKQ+LLDIY +F
Sbjct  62   ILQQIAKALRISAEALYVQAGILERREGGPVVDAILADPDLNERQKQVLLDIYGTF  117


>gi|300782359|ref|YP_003762650.1| XRE family transcriptional regulator [Amycolatopsis mediterranei 
U32]
 gi|299791873|gb|ADJ42248.1| XRE family transcriptional regulator [Amycolatopsis mediterranei 
U32]
 gi|340523725|gb|AEK38930.1| XRE family transcriptional regulator [Amycolatopsis mediterranei 
S699]
Length=139

 Score =  148 bits (374),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 69/111 (63%), Positives = 88/111 (80%), Gaps = 0/111 (0%)

Query  14   KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL  73
            K +D+ASDIG +IR QR TA +S+RQL++ +GVSNPYLSQ+ERG+RKPSA++L QIAK L
Sbjct  3    KVADIASDIGEYIRQQRNTAKISLRQLSKLAGVSNPYLSQIERGVRKPSAEILQQIAKGL  62

Query  74   RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            R+SAE LYV+AGIL+      V DAI  D  +TERQKQ+LLD+Y SF  +N
Sbjct  63   RISAEALYVQAGILDLPTGGPVGDAIRADAELTERQKQVLLDVYESFRREN  113


>gi|284028971|ref|YP_003378902.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283808264|gb|ADB30103.1| transcriptional regulator, XRE family [Kribbella flavida DSM 
17836]
Length=185

 Score =  148 bits (373),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 71/123 (58%), Positives = 93/123 (76%), Gaps = 7/123 (5%)

Query  9    AKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQ  68
            AK+S +A+     +G ++  QR  A +S+RQL++ +GVSNPYLSQ+ERGLRKPSADVL Q
Sbjct  2    AKLSDRAAGAVGSVGEYLAEQRRHAQLSLRQLSDLAGVSNPYLSQIERGLRKPSADVLQQ  61

Query  69   IAKALRVSAEVLYVRAGILEPSETSQ-------VRDAIITDTAITERQKQILLDIYASFT  121
            +AKALR+SAE LYVRAGIL+P + S        V DAI+ D A+TERQK++LLD+YASF 
Sbjct  62   LAKALRISAETLYVRAGILDPDDGSDGAGRATGVTDAILLDPALTERQKRVLLDVYASFV  121

Query  122  HQN  124
             +N
Sbjct  122  REN  124


>gi|302523789|ref|ZP_07276131.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302432684|gb|EFL04500.1| transcriptional regulator [Streptomyces sp. AA4]
Length=141

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 69/113 (62%), Positives = 89/113 (79%), Gaps = 0/113 (0%)

Query  14   KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL  73
            K +D+ASDIG +IR QR +A +S+RQL++ +GVSNPYLSQ+ERG+RKPSA++L QIAK L
Sbjct  13   KVADIASDIGEYIRQQRSSAKISLRQLSKLAGVSNPYLSQIERGVRKPSAEILQQIAKGL  72

Query  74   RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEA  126
            R+SAE LYV+AGIL+      V DAI  D  +TERQKQ+LLD+Y SF  +N A
Sbjct  73   RISAEALYVQAGILDLPTGGPVGDAIRADAELTERQKQVLLDVYESFRRENAA  125


>gi|256380757|ref|YP_003104417.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 
43827]
 gi|255925060|gb|ACU40571.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 
43827]
Length=128

 Score =  145 bits (366),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 67/112 (60%), Positives = 88/112 (79%), Gaps = 0/112 (0%)

Query  16   SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75
            +D+   IG +I+ QR +A +S+RQL++ +GVSNPYLSQ+ERGLRKPSA++L QIAK LR+
Sbjct  10   ADLGRGIGDYIKEQRNSAKISLRQLSKLAGVSNPYLSQIERGLRKPSAEILQQIAKGLRI  69

Query  76   SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEAT  127
            SAE LYV AGIL+  E   + DAI T + +TERQKQ+LLD+YASF  +N AT
Sbjct  70   SAEALYVEAGILQQREGGALADAITTASDLTERQKQVLLDVYASFRRENAAT  121


>gi|312200129|ref|YP_004020190.1| hypothetical protein FraEuI1c_6336 [Frankia sp. EuI1c]
 gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
Length=273

 Score =  143 bits (360),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 65/105 (62%), Positives = 86/105 (82%), Gaps = 1/105 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            ++G +IR QR  AH+S+RQLA+++GVSNPYLSQ+ERGLRKPSA++L QIAKALR+SAEVL
Sbjct  8    ELGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL  67

Query  81   YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN  124
            YV+AGILE  E  + V  A++ D  +T RQKQ++LDIY +F  +N
Sbjct  68   YVQAGILEEREGGEDVHAAVLADEVLTARQKQVILDIYDAFRREN  112


>gi|336120380|ref|YP_004575165.1| putative Xre family DNA binding protein [Microlunatus phosphovorus 
NM-1]
 gi|334688177|dbj|BAK37762.1| putative Xre family DNA binding protein [Microlunatus phosphovorus 
NM-1]
Length=172

 Score =  142 bits (359),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 67/106 (64%), Positives = 87/106 (83%), Gaps = 2/106 (1%)

Query  22   IGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVLY  81
            +G FI SQR  A +S+RQLAE++GVSNPYLSQ+ERGLRKPSA+VL Q++KALRVSAE LY
Sbjct  16   LGEFIASQRRAAELSLRQLAEQTGVSNPYLSQIERGLRKPSAEVLQQLSKALRVSAETLY  75

Query  82   VRAGILEPSE--TSQVRDAIITDTAITERQKQILLDIYASFTHQNE  125
            V+AGIL+P +   + V  A++ D AITERQK++L+D+Y SF  +NE
Sbjct  76   VKAGILDPDDHPATTVETAVLADLAITERQKRVLIDVYQSFVKENE  121


>gi|336179894|ref|YP_004585269.1| helix-turn-helix domain-containing protein [Frankia symbiont 
of Datisca glomerata]
 gi|334860874|gb|AEH11348.1| helix-turn-helix domain protein [Frankia symbiont of Datisca 
glomerata]
Length=267

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 66/105 (63%), Positives = 88/105 (84%), Gaps = 1/105 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            D+G FIR QR+ AH+S+RQLA ++GVSNPYLSQ+ERGLRKPSA++L QIAKALR+SAEVL
Sbjct  8    DLGDFIRDQRKAAHISVRQLARQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL  67

Query  81   YVRAGIL-EPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            YV+AGIL E +  S V  A++ D+ +TERQKQ++++IY +F  +N
Sbjct  68   YVQAGILDERASDSDVTAAVLADSTLTERQKQVIVEIYDAFRKEN  112


>gi|257054325|ref|YP_003132157.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
 gi|256584197|gb|ACU95330.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
Length=156

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 68/122 (56%), Positives = 91/122 (75%), Gaps = 3/122 (2%)

Query  14   KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL  73
            + + +  DIG++IR QR  A +S+RQL++ +GVSNPYLSQ+ERGLRKPSA++L QIAK L
Sbjct  29   RVASLGKDIGAYIRQQRNHAKISLRQLSKLAGVSNPYLSQIERGLRKPSAEILQQIAKGL  88

Query  74   RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN---EATREE  130
            R+SAE LYV+AGIL+      V DA+  D ++TERQKQ+LLD+Y SF  +N   EA  E+
Sbjct  89   RISAEALYVQAGILDRPVGGPVVDAVRADASLTERQKQVLLDVYESFLRENQGMEAAGEQ  148

Query  131  CP  132
             P
Sbjct  149  RP  150


>gi|269124926|ref|YP_003298296.1| XRE family transcriptional regulator [Thermomonospora curvata 
DSM 43183]
 gi|268309884|gb|ACY96258.1| transcriptional regulator, XRE family [Thermomonospora curvata 
DSM 43183]
Length=145

 Score =  141 bits (355),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 71/112 (64%), Positives = 87/112 (78%), Gaps = 2/112 (1%)

Query  15   ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR  74
             S V S IG +IR QR+ A +S+RQLA+ SG+SNPYLSQ+ERGLRKPSA++L QIAK LR
Sbjct  3    GSKVGS-IGEYIREQRQRAKISLRQLADVSGISNPYLSQIERGLRKPSAEILQQIAKGLR  61

Query  75   VSAEVLYVRAGILEPSET-SQVRDAIITDTAITERQKQILLDIYASFTHQNE  125
            +SAE LYV+AGILE  E  + V+ AI  D  +TERQKQ+LLDIY SF  +NE
Sbjct  62   ISAEALYVQAGILEDREADTDVQTAIRADLNLTERQKQVLLDIYESFRRENE  113


>gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
Length=325

 Score =  140 bits (353),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 64/105 (61%), Positives = 88/105 (84%), Gaps = 1/105 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            D+G FIR QR +A +S+RQLA+++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct  71   DLGDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL  130

Query  81   YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN  124
            YV+AGILE  +  + V  A++ D +++ERQKQ++LDIY +F  +N
Sbjct  131  YVQAGILEERQGEENVMAAVLADESLSERQKQVVLDIYEAFCREN  175


>gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a]
 gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni ACN14a]
Length=328

 Score =  140 bits (353),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 65/105 (62%), Positives = 86/105 (82%), Gaps = 1/105 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            D+G FIR QR  A +S+RQLA+++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct  8    DLGDFIRDQRRAAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL  67

Query  81   YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN  124
            YV+AGILE     + V  AI+ D +++ERQKQ++LDIY +F  +N
Sbjct  68   YVQAGILEERHGGEDVMAAILADDSLSERQKQVVLDIYEAFCTEN  112


>gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
Length=128

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 70/124 (57%), Positives = 87/124 (71%), Gaps = 2/124 (1%)

Query  15   ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR  74
            AS     +G +IR QR +A  S+RQLAE +GVSNPYLSQ+ERGLRKPSA++L QIAKALR
Sbjct  2    ASLNVGSLGEYIREQRRSAQYSLRQLAEVAGVSNPYLSQIERGLRKPSAEILQQIAKALR  61

Query  75   VSAEVLYVRAGILE--PSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECP  132
            +SAE LYV+AGILE    E   +R AI+ D  I ERQKQ LL +Y +F  +N+  RE   
Sbjct  62   ISAETLYVQAGILEERGEEGPGLRAAILADPLIGERQKQALLSVYEAFLQENQENRENRA  121

Query  133  SDPT  136
              P+
Sbjct  122  GRPS  125


>gi|345008313|ref|YP_004810667.1| helix-turn-helix domain-containing protein [Streptomyces violaceusniger 
Tu 4113]
 gi|344034662|gb|AEM80387.1| helix-turn-helix domain protein [Streptomyces violaceusniger 
Tu 4113]
Length=140

 Score =  138 bits (348),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 71/127 (56%), Positives = 94/127 (75%), Gaps = 3/127 (2%)

Query  15   ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR  74
            AS    ++G F+R QR +A +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA++L Q+AKALR
Sbjct  2    ASLNVGNLGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALR  61

Query  75   VSAEVLYVRAGILEP--SETSQVRDAIITDTAITERQKQILLDIYASFTHQNE-ATREEC  131
            +SAE LYV+AGIL+    E ++VR  I+ D +I ERQKQ+LL IY SF  +N   T  + 
Sbjct  62   ISAETLYVQAGILDERDREETEVRSVILADPSINERQKQVLLQIYESFRKENGLQTASDD  121

Query  132  PSDPTPT  138
             SDP+ T
Sbjct  122  LSDPSDT  128


>gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=284

 Score =  138 bits (348),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 67/119 (57%), Positives = 88/119 (74%), Gaps = 1/119 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            D+G FIR QR  A +S+RQLA ++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct  8    DVGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL  67

Query  81   YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSDPTPT  138
            YV+AGILE  E  + +  A+  D  +TERQKQ+++DIY +F  +N  T     + P  T
Sbjct  68   YVQAGILEEREGGEDLIAAVHADDTLTERQKQVIVDIYDAFRRENALTGASSGAKPAET  126


>gi|302543610|ref|ZP_07295952.1| PbsX family transcriptional regulator [Streptomyces hygroscopicus 
ATCC 53653]
 gi|302461228|gb|EFL24321.1| PbsX family transcriptional regulator [Streptomyces himastatinicus 
ATCC 53653]
Length=133

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 67/112 (60%), Positives = 86/112 (77%), Gaps = 2/112 (1%)

Query  15   ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR  74
            AS    ++G F+R QR TA +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA++L Q+AKALR
Sbjct  2    ASLNVGNLGDFLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALR  61

Query  75   VSAEVLYVRAGILEP--SETSQVRDAIITDTAITERQKQILLDIYASFTHQN  124
            +SAE LYV+AGIL+    E ++VR  I+ D  I ERQKQ+LL IY SF  +N
Sbjct  62   ISAETLYVQAGILDERDREETEVRSVILADPTINERQKQVLLQIYESFRKEN  113


>gi|328883993|emb|CCA57232.1| Transcriptional regulator, XRE family [Streptomyces venezuelae 
ATCC 10712]
Length=138

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 67/112 (60%), Positives = 86/112 (77%), Gaps = 2/112 (1%)

Query  15   ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR  74
            AS    ++G ++R QR TA +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA+VL Q+AKALR
Sbjct  2    ASLNVGNLGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALR  61

Query  75   VSAEVLYVRAGILEPSETSQV--RDAIITDTAITERQKQILLDIYASFTHQN  124
            +SAE LYVRAGIL+  E  ++  R  I+ D +I ERQKQ+LL IY SF  +N
Sbjct  62   ISAETLYVRAGILDEKERDELETRAVILADPSINERQKQVLLQIYDSFRKEN  113


>gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
Length=277

 Score =  137 bits (344),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 64/105 (61%), Positives = 84/105 (80%), Gaps = 1/105 (0%)

Query  21   DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL  80
            D+G FIR QR  A +S+RQLA ++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct  8    DVGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL  67

Query  81   YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN  124
            YV+AGILE  E  + +  A+  D  +TERQKQ+++DIY +F  +N
Sbjct  68   YVQAGILEEREGGEDLLAAVHADETLTERQKQVIVDIYDAFRREN  112


>gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C]
 gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C]
Length=145

 Score =  136 bits (343),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 64/117 (55%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  20   SDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEV  79
             ++G ++R QR  A +S+RQLA+ +GVSNPYLSQ+ERGLRKPSAD+L Q+AKALR+SAE 
Sbjct  13   GNLGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAET  72

Query  80   LYVRAGILEPSETSQV--RDAIITDTAITERQKQILLDIYASFTHQNEATREECPSD  134
            LYV+AGIL+  +  +V  R  I++D +I ERQKQ+LL IY +F  +N    +E P +
Sbjct  73   LYVQAGILDERDRDEVETRAVILSDPSINERQKQVLLQIYDAFRKENALEADEAPGE  129


>gi|297193564|ref|ZP_06910962.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718161|gb|EDY62069.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
Length=151

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 66/112 (59%), Positives = 85/112 (76%), Gaps = 2/112 (1%)

Query  15   ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR  74
            AS    ++G ++R QR  A +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA+VL Q+AKALR
Sbjct  8    ASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALR  67

Query  75   VSAEVLYVRAGILEPSETSQV--RDAIITDTAITERQKQILLDIYASFTHQN  124
            +SAE LYVRAGIL+  E  ++  R  I+ D +I ERQKQ+LL IY SF  +N
Sbjct  68   ISAETLYVRAGILDEQERDELETRAVILADPSINERQKQVLLQIYESFRKEN  119


>gi|317508728|ref|ZP_07966381.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316252976|gb|EFV12393.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC 
BAA-974]
Length=137

 Score =  135 bits (340),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 65/117 (56%), Positives = 85/117 (73%), Gaps = 0/117 (0%)

Query  20   SDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEV  79
             DIG FIR+QRE A VS+RQLA+R+GVSNPYLSQ+ERGLR PSA V+ QIAKALR+SAE 
Sbjct  15   GDIGEFIRTQRELAQVSLRQLAQRAGVSNPYLSQIERGLRNPSAQVMGQIAKALRLSAEA  74

Query  80   LYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSDPT  136
            L  +A +L   E S+VR+A++ D +ITERQK+ L+ +Y +F  +    R+     P 
Sbjct  75   LGTQAELLAEREPSRVREAVLADESITERQKEALVQVYEAFVQETSRARDLLRDQPN  131



Lambda     K      H
   0.310    0.123    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130895291376




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40