BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0474
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607615|ref|NP_214988.1| transcriptional regulatory protein ... 282 1e-74
gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycob... 279 9e-74
gi|41410065|ref|NP_962901.1| hypothetical protein MAP3967 [Mycob... 239 1e-61
gi|240169857|ref|ZP_04748516.1| transcriptional regulatory prote... 236 1e-60
gi|183980823|ref|YP_001849114.1| transcriptional regulatory prot... 235 2e-60
gi|254819802|ref|ZP_05224803.1| transcriptional regulator, XRE f... 231 4e-59
gi|342859024|ref|ZP_08715678.1| transcriptional regulatory prote... 228 2e-58
gi|118619637|ref|YP_907969.1| transcriptional regulatory protein... 226 6e-58
gi|296168076|ref|ZP_06850142.1| PbsX family transcriptional regu... 222 1e-56
gi|333989102|ref|YP_004521716.1| transcriptional regulator [Myco... 202 1e-50
gi|108797622|ref|YP_637819.1| XRE family transcriptional regulat... 201 4e-50
gi|120401822|ref|YP_951651.1| XRE family transcriptional regulat... 196 7e-49
gi|118467518|ref|YP_885321.1| XRE family transcriptional regulat... 194 2e-48
gi|145220707|ref|YP_001131385.1| XRE family transcriptional regu... 186 7e-46
gi|169631162|ref|YP_001704811.1| transcriptional regulator [Myco... 179 2e-43
gi|333918282|ref|YP_004491863.1| XRE family transcriptional regu... 175 3e-42
gi|262200774|ref|YP_003271982.1| transcriptional regulator [Gord... 167 6e-40
gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containi... 165 2e-39
gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhod... 163 8e-39
gi|229490145|ref|ZP_04383992.1| transcriptional regulator, XRE f... 163 1e-38
gi|226305077|ref|YP_002765035.1| Xre family DNA-binding protein ... 163 1e-38
gi|343925752|ref|ZP_08765267.1| putative Xre family DNA-binding ... 162 2e-38
gi|111019098|ref|YP_702070.1| transcriptional regulator [Rhodoco... 161 3e-38
gi|226361238|ref|YP_002779016.1| Xre family DNA-binding protein ... 161 4e-38
gi|296141333|ref|YP_003648576.1| XRE family transcriptional regu... 159 1e-37
gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocar... 158 2e-37
gi|324997738|ref|ZP_08118850.1| XRE family transcriptional regul... 154 6e-36
gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietz... 153 9e-36
gi|331694466|ref|YP_004330705.1| helix-turn-helix domain-contain... 153 9e-36
gi|134103416|ref|YP_001109077.1| XRE family transcriptional regu... 150 5e-35
gi|300782359|ref|YP_003762650.1| XRE family transcriptional regu... 148 2e-34
gi|284028971|ref|YP_003378902.1| XRE family transcriptional regu... 148 3e-34
gi|302523789|ref|ZP_07276131.1| transcriptional regulator [Strep... 147 4e-34
gi|256380757|ref|YP_003104417.1| XRE family transcriptional regu... 145 2e-33
gi|312200129|ref|YP_004020190.1| hypothetical protein FraEuI1c_6... 143 1e-32
gi|336120380|ref|YP_004575165.1| putative Xre family DNA binding... 142 1e-32
gi|336179894|ref|YP_004585269.1| helix-turn-helix domain-contain... 141 3e-32
gi|257054325|ref|YP_003132157.1| Helix-turn-helix protein [Sacch... 141 3e-32
gi|269124926|ref|YP_003298296.1| XRE family transcriptional regu... 141 3e-32
gi|86739175|ref|YP_479575.1| XRE family transcriptional regulato... 140 7e-32
gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Fran... 140 7e-32
gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator ... 139 2e-31
gi|345008313|ref|YP_004810667.1| helix-turn-helix domain-contain... 138 3e-31
gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE f... 138 3e-31
gi|302543610|ref|ZP_07295952.1| PbsX family transcriptional regu... 137 4e-31
gi|328883993|emb|CCA57232.1| Transcriptional regulator, XRE fami... 137 5e-31
gi|158317899|ref|YP_001510407.1| XRE family transcriptional regu... 137 6e-31
gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyce... 136 8e-31
gi|297193564|ref|ZP_06910962.1| DNA-binding protein [Streptomyce... 136 1e-30
gi|317508728|ref|ZP_07966381.1| hypothetical protein HMPREF9336_... 135 2e-30
>gi|15607615|ref|NP_214988.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15839863|ref|NP_334900.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31791654|ref|NP_854147.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=140
Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF
Sbjct 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
Query 121 THQNEATREECPSDPTPTDD 140
THQNEATREECPSDPTPTDD
Sbjct 121 THQNEATREECPSDPTPTDD 140
>gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289693093|gb|EFD60522.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
Length=140
Score = 279 bits (714), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 139/140 (99%), Positives = 139/140 (99%), Gaps = 0/140 (0%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF
Sbjct 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
Query 121 THQNEATREECPSDPTPTDD 140
THQNEATREEC SDPTPTDD
Sbjct 121 THQNEATREECLSDPTPTDD 140
>gi|41410065|ref|NP_962901.1| hypothetical protein MAP3967 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463985|ref|YP_883804.1| XRE family transcriptional regulator [Mycobacterium avium 104]
gi|254777113|ref|ZP_05218629.1| transcriptional regulator, XRE family protein [Mycobacterium
avium subsp. avium ATCC 25291]
gi|41398898|gb|AAS06517.1| hypothetical protein MAP_3967 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|48928160|gb|AAT47758.1| possible transcriptional regulator [Mycobacterium avium]
gi|118165272|gb|ABK66169.1| transcriptional regulator, XRE family protein [Mycobacterium
avium 104]
gi|336460417|gb|EGO39315.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=138
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/135 (87%), Positives = 126/135 (94%), Gaps = 0/135 (0%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M+ EEKL+AKVS ASD+ASDIGSFIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct 1 MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK 60
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPS+ SQVRDAI+TDTAITERQKQILLDIYASF
Sbjct 61 PSADVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASF 120
Query 121 THQNEATREECPSDP 135
T QNEAT EECP+ P
Sbjct 121 TQQNEATHEECPTQP 135
>gi|240169857|ref|ZP_04748516.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=138
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/140 (88%), Positives = 127/140 (91%), Gaps = 2/140 (1%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M EEK AKVS+ S ASDIGSFIR+QRETA VSMRQLAERSGVSNPYLSQVERGLRK
Sbjct 1 MPPEEKFGAKVSSVTSR-ASDIGSFIRTQRETAQVSMRQLAERSGVSNPYLSQVERGLRK 59
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYA+F
Sbjct 60 PSADVLAQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYAAF 119
Query 121 THQNEATREECPSDPTPTDD 140
THQNEATREEC S P+ DD
Sbjct 120 THQNEATREEC-SSPSDIDD 138
>gi|183980823|ref|YP_001849114.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183174149|gb|ACC39259.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=138
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/140 (87%), Positives = 125/140 (90%), Gaps = 2/140 (1%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M EEKL AKVS +S ASDIGSFIR+QRE AHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct 1 MPGEEKLGAKVSAVSSK-ASDIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK 59
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPSETSQVRD IITDTAITERQKQILLDIYASF
Sbjct 60 PSADVLAQIAKALRVSAEVLYVRAGILEPSETSQVRDVIITDTAITERQKQILLDIYASF 119
Query 121 THQNEATREECPSDPTPTDD 140
T QNEA REEC S P+ DD
Sbjct 120 TQQNEAVREEC-SSPSEIDD 138
>gi|254819802|ref|ZP_05224803.1| transcriptional regulator, XRE family protein [Mycobacterium
intracellulare ATCC 13950]
Length=138
Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 113/131 (87%), Positives = 123/131 (94%), Gaps = 0/131 (0%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M+ EEKL+AKVS ASD+ASDIGSFIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct 1 MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK 60
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEP++ SQVRDAI+TDTAITERQKQILLDIYASF
Sbjct 61 PSADVLNQIAKALRVSAEVLYVRAGILEPTDKSQVRDAIVTDTAITERQKQILLDIYASF 120
Query 121 THQNEATREEC 131
T QNE+T EEC
Sbjct 121 TQQNESTDEEC 131
>gi|342859024|ref|ZP_08715678.1| transcriptional regulatory protein [Mycobacterium colombiense
CECT 3035]
gi|342133265|gb|EGT86468.1| transcriptional regulatory protein [Mycobacterium colombiense
CECT 3035]
Length=138
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/134 (84%), Positives = 125/134 (94%), Gaps = 0/134 (0%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M+ EEKL+AKVS AS+VASDIGSFIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct 1 MTPEEKLSAKVSNAASEVASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK 60
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPS+ SQVRDAI+TDTAITERQKQILLDIY+SF
Sbjct 61 PSADVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYSSF 120
Query 121 THQNEATREECPSD 134
T QNE+ +EE P++
Sbjct 121 TQQNESIQEESPTE 134
>gi|118619637|ref|YP_907969.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118571747|gb|ABL06498.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=138
Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/140 (85%), Positives = 123/140 (88%), Gaps = 2/140 (1%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M EEKL AKVS +S ASDIGSFIR+QRE AHVSMRQLAERSGVSNPYLSQVERGLRK
Sbjct 1 MPGEEKLGAKVSAVSSK-ASDIGSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK 59
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPSETSQVRD IITDTAITERQKQILLDIYASF
Sbjct 60 PSADVLAQIAKALRVSAEVLYVRAGILEPSETSQVRDVIITDTAITERQKQILLDIYASF 119
Query 121 THQNEATREECPSDPTPTDD 140
T QNEA EE S P+ DD
Sbjct 120 TQQNEAVCEEY-SSPSEIDD 138
>gi|296168076|ref|ZP_06850142.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896883|gb|EFG76511.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=142
Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/139 (80%), Positives = 125/139 (90%), Gaps = 3/139 (2%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M+ EEKL+AKVS ASD+ASDIG FIRSQRE A VS+RQLAE+SGVSNPYLSQVERGLRK
Sbjct 1 MAPEEKLSAKVSNAASDMASDIGGFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK 60
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSA+VL+QIAKALRVSAEVLYVRAGILEPS+ SQVRDAIITDTAITERQKQ+LLD+Y SF
Sbjct 61 PSAEVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIITDTAITERQKQVLLDVYTSF 120
Query 121 THQNEA---TREECPSDPT 136
T QNEA ++EEC ++ +
Sbjct 121 TQQNEAAESSKEECSTESS 139
>gi|333989102|ref|YP_004521716.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333485070|gb|AEF34462.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=130
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/131 (77%), Positives = 114/131 (88%), Gaps = 4/131 (3%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
MS ++KLAA VST A+DIGSFIR+QRE A VSMRQLA+++GVSNPYLSQ+ERGLRK
Sbjct 1 MSQDDKLAAVVST----AAADIGSFIRAQREAAQVSMRQLADKAGVSNPYLSQIERGLRK 56
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLY+RAGILEPSE S+VRDA+I+D AITERQKQ+LLDIY SF
Sbjct 57 PSADVLNQIAKALRVSAEVLYIRAGILEPSEKSEVRDAVISDAAITERQKQVLLDIYTSF 116
Query 121 THQNEATREEC 131
QNEA EE
Sbjct 117 VQQNEADGEET 127
>gi|108797622|ref|YP_637819.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
gi|119866709|ref|YP_936661.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
gi|126433246|ref|YP_001068937.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
gi|108768041|gb|ABG06763.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
gi|119692798|gb|ABL89871.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
gi|126233046|gb|ABN96446.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
Length=161
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/136 (75%), Positives = 113/136 (84%), Gaps = 4/136 (2%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
MS +E LAA V+ + A DIGSFIRSQRE A VS+RQLAE++GVSNPYLSQ+ERGLRK
Sbjct 1 MSQDENLAAVVT----NAAQDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK 56
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPSE QVRDAI++DTAITERQKQ+LLDIY SF
Sbjct 57 PSADVLNQIAKALRVSAEVLYVRAGILEPSEAGQVRDAILSDTAITERQKQVLLDIYTSF 116
Query 121 THQNEATREECPSDPT 136
QNE E +PT
Sbjct 117 CQQNEVAGSEVDEEPT 132
>gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
PYR-1]
Length=176
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 99/133 (75%), Positives = 112/133 (85%), Gaps = 4/133 (3%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M +E LAA +S+ A DIGSFIR+QRE A VS+RQLAE++GVSNPYLSQ+ERGLRK
Sbjct 1 MPQDENLAAVMSS----AAQDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK 56
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPSET++VRDAI+TDTAI ERQKQ+LLDIY SF
Sbjct 57 PSADVLNQIAKALRVSAEVLYVRAGILEPSETNEVRDAIVTDTAINERQKQVLLDIYTSF 116
Query 121 THQNEATREECPS 133
QNEA E S
Sbjct 117 CQQNEAVLAEAVS 129
>gi|118467518|ref|YP_885321.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis
str. MC2 155]
gi|118168805|gb|ABK69701.1| transcriptional regulator, XRE family protein [Mycobacterium
smegmatis str. MC2 155]
Length=142
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/140 (71%), Positives = 114/140 (82%), Gaps = 4/140 (2%)
Query 1 MSSEEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRK 60
M+ +E LAA VS + A DIGSFIR+QRE A VS+RQLAE++GVSNPYLSQ+ERGLRK
Sbjct 1 MAQDENLAAVVS----NAAQDIGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK 56
Query 61 PSADVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
PSADVL+QIAKALRVSAEVLYVRAGILEPSE S+VRDAI+ D +ITERQKQ+LLDIY SF
Sbjct 57 PSADVLNQIAKALRVSAEVLYVRAGILEPSEPSEVRDAIVNDVSITERQKQVLLDIYTSF 116
Query 121 THQNEATREECPSDPTPTDD 140
QNEA E + P+ D
Sbjct 117 RQQNEAAGEPEGAAVIPSPD 136
>gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK]
gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
Length=182
Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/121 (77%), Positives = 105/121 (87%), Gaps = 4/121 (3%)
Query 4 EEKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSA 63
+E LAA VS + A DIGSFIRSQRE A VS+RQLAE++GVSNPYLSQ+ERGLRKPSA
Sbjct 7 DENLAAVVS----NAAQDIGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSA 62
Query 64 DVLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQ 123
DVL+QIAKALRVSAEVLY++AGILEP +T++VRDAIITD AI ERQKQ+LLDIY SF Q
Sbjct 63 DVLNQIAKALRVSAEVLYIQAGILEPGDTNEVRDAIITDMAINERQKQVLLDIYTSFCQQ 122
Query 124 N 124
N
Sbjct 123 N 123
>gi|169631162|ref|YP_001704811.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977]
gi|169243129|emb|CAM64157.1| Possible transcriptional regulator [Mycobacterium abscessus]
Length=139
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/125 (72%), Positives = 106/125 (85%), Gaps = 1/125 (0%)
Query 11 VSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIA 70
++T S+ ASDIG FIR+QRE A VS+RQLAE++GVSNPYLSQ+ERGLR+PSA+VL+QIA
Sbjct 7 LATAVSNAASDIGGFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRRPSAEVLNQIA 66
Query 71 KALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN-EATRE 129
KALRVSAEVLYVRAGIL+ S+ S VRDAII DT ITERQKQ+LLD+Y+SF QN EA +
Sbjct 67 KALRVSAEVLYVRAGILDRSDASPVRDAIIADTFITERQKQVLLDVYSSFVQQNAEAQSD 126
Query 130 ECPSD 134
SD
Sbjct 127 VAESD 131
>gi|333918282|ref|YP_004491863.1| XRE family transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480503|gb|AEF39063.1| Transcriptional regulator, XRE family [Amycolicicoccus subflavus
DQS3-9A1]
Length=191
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/114 (72%), Positives = 98/114 (86%), Gaps = 0/114 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
S+ A DIGSFIR+QRE A VS+RQLAER+GVSNPYLSQ+ERGLRKPSA+VL QIAK LRV
Sbjct 78 SNAAQDIGSFIRAQRELAQVSLRQLAERAGVSNPYLSQIERGLRKPSAEVLGQIAKGLRV 137
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATRE 129
SAE LYVRAGILE ++S VRDA++ D + ERQKQ++L+IY SF H+NEA++E
Sbjct 138 SAEALYVRAGILEQRQSSPVRDAVLADATLNERQKQVILEIYNSFCHENEASQE 191
>gi|262200774|ref|YP_003271982.1| transcriptional regulator [Gordonia bronchialis DSM 43247]
gi|262084121|gb|ACY20089.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
Length=141
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/114 (72%), Positives = 94/114 (83%), Gaps = 0/114 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
++ A DIG+FIRSQR A VS+RQLAER+GVSNPYLSQ+ERGLRKPSADVL+QIAK LRV
Sbjct 27 ANAAQDIGAFIRSQRVAAEVSLRQLAERAGVSNPYLSQIERGLRKPSADVLAQIAKGLRV 86
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATRE 129
SAEVLYVRAGILE S VRDA+I D +I ERQKQ+LL+IY SF +N A E
Sbjct 87 SAEVLYVRAGILEERPASPVRDALIADDSINERQKQMLLEIYDSFRKENAAADE 140
>gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326197204|gb|EGD54395.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=156
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/109 (74%), Positives = 94/109 (87%), Gaps = 0/109 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
++ A DIG FIRSQR +A VS+RQLAER+GVSNPYLSQ+ERGLRKPSADVLSQIAK LRV
Sbjct 21 ANAAQDIGEFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERGLRKPSADVLSQIAKGLRV 80
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
SAEVLYVRAGILE S VRDA++ D++I+ERQKQ+LL+IY SF +N
Sbjct 81 SAEVLYVRAGILEARPASPVRDALLADSSISERQKQMLLEIYDSFRREN 129
>gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhodococcus equi 103S]
gi|325674029|ref|ZP_08153719.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|311890488|emb|CBH49806.1| putative transcriptional regulator [Rhodococcus equi 103S]
gi|325555294|gb|EGD24966.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=155
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 85/133 (64%), Positives = 102/133 (77%), Gaps = 3/133 (2%)
Query 8 AAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLS 67
AA+V A A DIGSFIRSQRE A VS+RQLA+ +GVSNPYLSQ+ERGLRKPSADVL+
Sbjct 11 AARVVAGA---AQDIGSFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERGLRKPSADVLA 67
Query 68 QIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEAT 127
QIAK LRVS+EVLYV+AGILE S VRDA++ D AITERQKQ+LL+IY SF +N+
Sbjct 68 QIAKGLRVSSEVLYVQAGILEQRPHSPVRDALLADGAITERQKQVLLEIYESFRRENDPH 127
Query 128 REECPSDPTPTDD 140
+ E +D+
Sbjct 128 QSESADQADASDE 140
>gi|229490145|ref|ZP_04383992.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
SK121]
gi|229322893|gb|EEN88667.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
SK121]
Length=168
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/113 (70%), Positives = 94/113 (84%), Gaps = 0/113 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
S A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSADVL+QIAK LRV
Sbjct 31 SSAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRV 90
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATR 128
S+EVLYV+AG LE S +RDA++ +TAI ERQKQ+LL+IY SF +NE++R
Sbjct 91 SSEVLYVQAGYLEQRPHSPIRDAVLAETAINERQKQVLLEIYDSFCRENESSR 143
>gi|226305077|ref|YP_002765035.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
gi|226184192|dbj|BAH32296.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
PR4]
Length=168
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/113 (70%), Positives = 94/113 (84%), Gaps = 0/113 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
S A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSADVL+QIAK LRV
Sbjct 31 SSAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRV 90
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATR 128
S+EVLYV+AG LE S +RDA++ +TAI ERQKQ+LL+IY SF +NE++R
Sbjct 91 SSEVLYVQAGYLEQRPHSPIRDAVLAETAINERQKQVLLEIYDSFCRENESSR 143
>gi|343925752|ref|ZP_08765267.1| putative Xre family DNA-binding protein [Gordonia alkanivorans
NBRC 16433]
gi|343764103|dbj|GAA12193.1| putative Xre family DNA-binding protein [Gordonia alkanivorans
NBRC 16433]
Length=177
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 89/104 (86%), Gaps = 0/104 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
DIG+FIRSQR A VS+RQL+ER+GVSNPYLSQ+ERGLRKPSADVL+QIAK LRVSAEVL
Sbjct 59 DIGAFIRSQRVAAKVSLRQLSERAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSAEVL 118
Query 81 YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
YVRAGILE S VRDA+I D +I ERQKQ+LL+IY SF +N
Sbjct 119 YVRAGILEERPASPVRDALIADDSINERQKQMLLEIYESFRKEN 162
>gi|111019098|ref|YP_702070.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110818628|gb|ABG93912.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=168
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/111 (70%), Positives = 92/111 (83%), Gaps = 0/111 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
S+ A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSA+VL QIAK LRV
Sbjct 20 SNAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSAEVLGQIAKGLRV 79
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEA 126
S+EVLYV+AG LE +RDA++ DTAITERQKQ+LL+IY SF +NE+
Sbjct 80 SSEVLYVQAGYLEQRPHGPLRDALLADTAITERQKQVLLEIYESFCRENES 130
>gi|226361238|ref|YP_002779016.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
gi|226239723|dbj|BAH50071.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
Length=168
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/111 (70%), Positives = 92/111 (83%), Gaps = 0/111 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
S+ A DIG FIR+QRE A VSMRQLA+ +GVSNPYLSQ+ERGLRKPSA+VL QIAK LRV
Sbjct 20 SNAAHDIGGFIRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSAEVLGQIAKGLRV 79
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEA 126
S+EVLYV+AG LE +RDA++ DTAITERQKQ+LL+IY SF +NE+
Sbjct 80 SSEVLYVQAGYLEQRPHGPLRDALLADTAITERQKQVLLEIYESFCRENES 130
>gi|296141333|ref|YP_003648576.1| XRE family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296029467|gb|ADG80237.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
DSM 20162]
Length=128
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/113 (70%), Positives = 92/113 (82%), Gaps = 0/113 (0%)
Query 22 IGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVLY 81
+G FIR+QR A VS+RQLAE++GVSNPYLSQ+ERGLR+PSADVL QIAKALR+SAEVLY
Sbjct 16 LGEFIRAQRIAAEVSIRQLAEKAGVSNPYLSQIERGLRRPSADVLGQIAKALRLSAEVLY 75
Query 82 VRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSD 134
V+AGILE S VRDA+I DTAITERQKQ LL+IY SF +NE +E D
Sbjct 76 VQAGILEERPESPVRDALIADTAITERQKQALLEIYESFRRENETALKEINHD 128
>gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
gi|54018691|dbj|BAD60061.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
Length=136
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/111 (69%), Positives = 91/111 (82%), Gaps = 0/111 (0%)
Query 14 KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL 73
+ ++ A DIG FIR+QRE A VS+RQLA +GVSNPYLSQ+ERGLR PSA+VL+QIAKAL
Sbjct 9 RVANAAHDIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKAL 68
Query 74 RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
RVS+EVLYVRAG LE VRDA++ DT+ITERQKQ+LLDIY SF +N
Sbjct 69 RVSSEVLYVRAGYLEQRPHGPVRDALLADTSITERQKQVLLDIYESFRREN 119
>gi|324997738|ref|ZP_08118850.1| XRE family transcriptional regulator [Pseudonocardia sp. P1]
Length=163
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/104 (70%), Positives = 86/104 (83%), Gaps = 0/104 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
DIGS+IRSQRE A VSMRQLA +GVSNPYLSQVERGLRKPSA++L QIAK LR+SAE L
Sbjct 46 DIGSYIRSQREAAQVSMRQLARSAGVSNPYLSQVERGLRKPSAEILQQIAKGLRISAEAL 105
Query 81 YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
YVRAGILE +V DA++TD ++ERQK++LLD+Y SF +N
Sbjct 106 YVRAGILEERPAGKVTDAVLTDPTLSERQKRVLLDVYESFRREN 149
>gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4]
gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4]
Length=176
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/104 (71%), Positives = 88/104 (85%), Gaps = 0/104 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
DIGSFIR+QRE A VS+RQLAER+GVSNPYLSQ+ERGLRKPSA+VL QIA+ LR+SAEVL
Sbjct 62 DIGSFIRAQREAAQVSIRQLAERAGVSNPYLSQIERGLRKPSAEVLGQIARGLRLSAEVL 121
Query 81 YVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
Y RAGILE + S VRDAI+T +TERQ+++L++IY SF N
Sbjct 122 YARAGILELKQGSPVRDAILTAPDLTERQREVLVEIYESFLANN 165
>gi|331694466|ref|YP_004330705.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326949155|gb|AEA22852.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=149
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/121 (62%), Positives = 92/121 (77%), Gaps = 0/121 (0%)
Query 5 EKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD 64
EK +V DIGS+IRSQRE+A VS+RQLA+ +GVSNPYLSQVERGLRKPSA+
Sbjct 12 EKAVEQVGQAVGQAVDDIGSYIRSQRESAQVSLRQLAKVTGVSNPYLSQVERGLRKPSAE 71
Query 65 VLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
+L QIAK LR+SAE LYV+AGIL+ S V DA++ D +TERQKQ+LLDIY SF ++
Sbjct 72 ILQQIAKGLRISAEALYVKAGILDERPASAVTDAVLADPLLTERQKQVLLDIYQSFRRES 131
Query 125 E 125
+
Sbjct 132 D 132
>gi|134103416|ref|YP_001109077.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291006044|ref|ZP_06564017.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133916039|emb|CAM06152.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea
NRRL 2338]
Length=148
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/116 (62%), Positives = 91/116 (79%), Gaps = 0/116 (0%)
Query 5 EKLAAKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD 64
E++ V+ + SD+G++IR+QR A +S+RQLA+R+GVSNPYLSQVERGLRKPSA+
Sbjct 2 ERVDKTVNKAVNQAVSDLGAYIRTQRGNAQISLRQLAKRAGVSNPYLSQVERGLRKPSAE 61
Query 65 VLSQIAKALRVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASF 120
+L QIAKALR+SAE LYV+AGILE E V DAI+ D + ERQKQ+LLDIY +F
Sbjct 62 ILQQIAKALRISAEALYVQAGILERREGGPVVDAILADPDLNERQKQVLLDIYGTF 117
>gi|300782359|ref|YP_003762650.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299791873|gb|ADJ42248.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340523725|gb|AEK38930.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=139
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/111 (63%), Positives = 88/111 (80%), Gaps = 0/111 (0%)
Query 14 KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL 73
K +D+ASDIG +IR QR TA +S+RQL++ +GVSNPYLSQ+ERG+RKPSA++L QIAK L
Sbjct 3 KVADIASDIGEYIRQQRNTAKISLRQLSKLAGVSNPYLSQIERGVRKPSAEILQQIAKGL 62
Query 74 RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
R+SAE LYV+AGIL+ V DAI D +TERQKQ+LLD+Y SF +N
Sbjct 63 RISAEALYVQAGILDLPTGGPVGDAIRADAELTERQKQVLLDVYESFRREN 113
>gi|284028971|ref|YP_003378902.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836]
gi|283808264|gb|ADB30103.1| transcriptional regulator, XRE family [Kribbella flavida DSM
17836]
Length=185
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/123 (58%), Positives = 93/123 (76%), Gaps = 7/123 (5%)
Query 9 AKVSTKASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQ 68
AK+S +A+ +G ++ QR A +S+RQL++ +GVSNPYLSQ+ERGLRKPSADVL Q
Sbjct 2 AKLSDRAAGAVGSVGEYLAEQRRHAQLSLRQLSDLAGVSNPYLSQIERGLRKPSADVLQQ 61
Query 69 IAKALRVSAEVLYVRAGILEPSETSQ-------VRDAIITDTAITERQKQILLDIYASFT 121
+AKALR+SAE LYVRAGIL+P + S V DAI+ D A+TERQK++LLD+YASF
Sbjct 62 LAKALRISAETLYVRAGILDPDDGSDGAGRATGVTDAILLDPALTERQKRVLLDVYASFV 121
Query 122 HQN 124
+N
Sbjct 122 REN 124
>gi|302523789|ref|ZP_07276131.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302432684|gb|EFL04500.1| transcriptional regulator [Streptomyces sp. AA4]
Length=141
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/113 (62%), Positives = 89/113 (79%), Gaps = 0/113 (0%)
Query 14 KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL 73
K +D+ASDIG +IR QR +A +S+RQL++ +GVSNPYLSQ+ERG+RKPSA++L QIAK L
Sbjct 13 KVADIASDIGEYIRQQRSSAKISLRQLSKLAGVSNPYLSQIERGVRKPSAEILQQIAKGL 72
Query 74 RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEA 126
R+SAE LYV+AGIL+ V DAI D +TERQKQ+LLD+Y SF +N A
Sbjct 73 RISAEALYVQAGILDLPTGGPVGDAIRADAELTERQKQVLLDVYESFRRENAA 125
>gi|256380757|ref|YP_003104417.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255925060|gb|ACU40571.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
43827]
Length=128
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/112 (60%), Positives = 88/112 (79%), Gaps = 0/112 (0%)
Query 16 SDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV 75
+D+ IG +I+ QR +A +S+RQL++ +GVSNPYLSQ+ERGLRKPSA++L QIAK LR+
Sbjct 10 ADLGRGIGDYIKEQRNSAKISLRQLSKLAGVSNPYLSQIERGLRKPSAEILQQIAKGLRI 69
Query 76 SAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEAT 127
SAE LYV AGIL+ E + DAI T + +TERQKQ+LLD+YASF +N AT
Sbjct 70 SAEALYVEAGILQQREGGALADAITTASDLTERQKQVLLDVYASFRRENAAT 121
>gi|312200129|ref|YP_004020190.1| hypothetical protein FraEuI1c_6336 [Frankia sp. EuI1c]
gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
Length=273
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/105 (62%), Positives = 86/105 (82%), Gaps = 1/105 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
++G +IR QR AH+S+RQLA+++GVSNPYLSQ+ERGLRKPSA++L QIAKALR+SAEVL
Sbjct 8 ELGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL 67
Query 81 YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN 124
YV+AGILE E + V A++ D +T RQKQ++LDIY +F +N
Sbjct 68 YVQAGILEEREGGEDVHAAVLADEVLTARQKQVILDIYDAFRREN 112
>gi|336120380|ref|YP_004575165.1| putative Xre family DNA binding protein [Microlunatus phosphovorus
NM-1]
gi|334688177|dbj|BAK37762.1| putative Xre family DNA binding protein [Microlunatus phosphovorus
NM-1]
Length=172
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/106 (64%), Positives = 87/106 (83%), Gaps = 2/106 (1%)
Query 22 IGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVLY 81
+G FI SQR A +S+RQLAE++GVSNPYLSQ+ERGLRKPSA+VL Q++KALRVSAE LY
Sbjct 16 LGEFIASQRRAAELSLRQLAEQTGVSNPYLSQIERGLRKPSAEVLQQLSKALRVSAETLY 75
Query 82 VRAGILEPSE--TSQVRDAIITDTAITERQKQILLDIYASFTHQNE 125
V+AGIL+P + + V A++ D AITERQK++L+D+Y SF +NE
Sbjct 76 VKAGILDPDDHPATTVETAVLADLAITERQKRVLIDVYQSFVKENE 121
>gi|336179894|ref|YP_004585269.1| helix-turn-helix domain-containing protein [Frankia symbiont
of Datisca glomerata]
gi|334860874|gb|AEH11348.1| helix-turn-helix domain protein [Frankia symbiont of Datisca
glomerata]
Length=267
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/105 (63%), Positives = 88/105 (84%), Gaps = 1/105 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
D+G FIR QR+ AH+S+RQLA ++GVSNPYLSQ+ERGLRKPSA++L QIAKALR+SAEVL
Sbjct 8 DLGDFIRDQRKAAHISVRQLARQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL 67
Query 81 YVRAGIL-EPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
YV+AGIL E + S V A++ D+ +TERQKQ++++IY +F +N
Sbjct 68 YVQAGILDERASDSDVTAAVLADSTLTERQKQVIVEIYDAFRKEN 112
>gi|257054325|ref|YP_003132157.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
gi|256584197|gb|ACU95330.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
Length=156
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/122 (56%), Positives = 91/122 (75%), Gaps = 3/122 (2%)
Query 14 KASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKAL 73
+ + + DIG++IR QR A +S+RQL++ +GVSNPYLSQ+ERGLRKPSA++L QIAK L
Sbjct 29 RVASLGKDIGAYIRQQRNHAKISLRQLSKLAGVSNPYLSQIERGLRKPSAEILQQIAKGL 88
Query 74 RVSAEVLYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQN---EATREE 130
R+SAE LYV+AGIL+ V DA+ D ++TERQKQ+LLD+Y SF +N EA E+
Sbjct 89 RISAEALYVQAGILDRPVGGPVVDAVRADASLTERQKQVLLDVYESFLRENQGMEAAGEQ 148
Query 131 CP 132
P
Sbjct 149 RP 150
>gi|269124926|ref|YP_003298296.1| XRE family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268309884|gb|ACY96258.1| transcriptional regulator, XRE family [Thermomonospora curvata
DSM 43183]
Length=145
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/112 (64%), Positives = 87/112 (78%), Gaps = 2/112 (1%)
Query 15 ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR 74
S V S IG +IR QR+ A +S+RQLA+ SG+SNPYLSQ+ERGLRKPSA++L QIAK LR
Sbjct 3 GSKVGS-IGEYIREQRQRAKISLRQLADVSGISNPYLSQIERGLRKPSAEILQQIAKGLR 61
Query 75 VSAEVLYVRAGILEPSET-SQVRDAIITDTAITERQKQILLDIYASFTHQNE 125
+SAE LYV+AGILE E + V+ AI D +TERQKQ+LLDIY SF +NE
Sbjct 62 ISAEALYVQAGILEDREADTDVQTAIRADLNLTERQKQVLLDIYESFRRENE 113
>gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3]
gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
Length=325
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/105 (61%), Positives = 88/105 (84%), Gaps = 1/105 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
D+G FIR QR +A +S+RQLA+++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct 71 DLGDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 130
Query 81 YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN 124
YV+AGILE + + V A++ D +++ERQKQ++LDIY +F +N
Sbjct 131 YVQAGILEERQGEENVMAAVLADESLSERQKQVVLDIYEAFCREN 175
>gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a]
gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni ACN14a]
Length=328
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/105 (62%), Positives = 86/105 (82%), Gaps = 1/105 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
D+G FIR QR A +S+RQLA+++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct 8 DLGDFIRDQRRAAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67
Query 81 YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN 124
YV+AGILE + V AI+ D +++ERQKQ++LDIY +F +N
Sbjct 68 YVQAGILEERHGGEDVMAAILADDSLSERQKQVVLDIYEAFCTEN 112
>gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
Length=128
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/124 (57%), Positives = 87/124 (71%), Gaps = 2/124 (1%)
Query 15 ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR 74
AS +G +IR QR +A S+RQLAE +GVSNPYLSQ+ERGLRKPSA++L QIAKALR
Sbjct 2 ASLNVGSLGEYIREQRRSAQYSLRQLAEVAGVSNPYLSQIERGLRKPSAEILQQIAKALR 61
Query 75 VSAEVLYVRAGILE--PSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECP 132
+SAE LYV+AGILE E +R AI+ D I ERQKQ LL +Y +F +N+ RE
Sbjct 62 ISAETLYVQAGILEERGEEGPGLRAAILADPLIGERQKQALLSVYEAFLQENQENRENRA 121
Query 133 SDPT 136
P+
Sbjct 122 GRPS 125
>gi|345008313|ref|YP_004810667.1| helix-turn-helix domain-containing protein [Streptomyces violaceusniger
Tu 4113]
gi|344034662|gb|AEM80387.1| helix-turn-helix domain protein [Streptomyces violaceusniger
Tu 4113]
Length=140
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/127 (56%), Positives = 94/127 (75%), Gaps = 3/127 (2%)
Query 15 ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR 74
AS ++G F+R QR +A +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA++L Q+AKALR
Sbjct 2 ASLNVGNLGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALR 61
Query 75 VSAEVLYVRAGILEP--SETSQVRDAIITDTAITERQKQILLDIYASFTHQNE-ATREEC 131
+SAE LYV+AGIL+ E ++VR I+ D +I ERQKQ+LL IY SF +N T +
Sbjct 62 ISAETLYVQAGILDERDREETEVRSVILADPSINERQKQVLLQIYESFRKENGLQTASDD 121
Query 132 PSDPTPT 138
SDP+ T
Sbjct 122 LSDPSDT 128
>gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=284
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/119 (57%), Positives = 88/119 (74%), Gaps = 1/119 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
D+G FIR QR A +S+RQLA ++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct 8 DVGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67
Query 81 YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSDPTPT 138
YV+AGILE E + + A+ D +TERQKQ+++DIY +F +N T + P T
Sbjct 68 YVQAGILEEREGGEDLIAAVHADDTLTERQKQVIVDIYDAFRRENALTGASSGAKPAET 126
>gi|302543610|ref|ZP_07295952.1| PbsX family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|302461228|gb|EFL24321.1| PbsX family transcriptional regulator [Streptomyces himastatinicus
ATCC 53653]
Length=133
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/112 (60%), Positives = 86/112 (77%), Gaps = 2/112 (1%)
Query 15 ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR 74
AS ++G F+R QR TA +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA++L Q+AKALR
Sbjct 2 ASLNVGNLGDFLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALR 61
Query 75 VSAEVLYVRAGILEP--SETSQVRDAIITDTAITERQKQILLDIYASFTHQN 124
+SAE LYV+AGIL+ E ++VR I+ D I ERQKQ+LL IY SF +N
Sbjct 62 ISAETLYVQAGILDERDREETEVRSVILADPTINERQKQVLLQIYESFRKEN 113
>gi|328883993|emb|CCA57232.1| Transcriptional regulator, XRE family [Streptomyces venezuelae
ATCC 10712]
Length=138
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/112 (60%), Positives = 86/112 (77%), Gaps = 2/112 (1%)
Query 15 ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR 74
AS ++G ++R QR TA +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA+VL Q+AKALR
Sbjct 2 ASLNVGNLGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALR 61
Query 75 VSAEVLYVRAGILEPSETSQV--RDAIITDTAITERQKQILLDIYASFTHQN 124
+SAE LYVRAGIL+ E ++ R I+ D +I ERQKQ+LL IY SF +N
Sbjct 62 ISAETLYVRAGILDEKERDELETRAVILADPSINERQKQVLLQIYDSFRKEN 113
>gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
Length=277
Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/105 (61%), Positives = 84/105 (80%), Gaps = 1/105 (0%)
Query 21 DIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEVL 80
D+G FIR QR A +S+RQLA ++GVSNPYLSQ+ERGLR+PSA++L QIAKALR+SAEVL
Sbjct 8 DVGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67
Query 81 YVRAGILEPSETSQ-VRDAIITDTAITERQKQILLDIYASFTHQN 124
YV+AGILE E + + A+ D +TERQKQ+++DIY +F +N
Sbjct 68 YVQAGILEEREGGEDLLAAVHADETLTERQKQVIVDIYDAFRREN 112
>gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C]
gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C]
Length=145
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/117 (55%), Positives = 88/117 (76%), Gaps = 2/117 (1%)
Query 20 SDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEV 79
++G ++R QR A +S+RQLA+ +GVSNPYLSQ+ERGLRKPSAD+L Q+AKALR+SAE
Sbjct 13 GNLGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAET 72
Query 80 LYVRAGILEPSETSQV--RDAIITDTAITERQKQILLDIYASFTHQNEATREECPSD 134
LYV+AGIL+ + +V R I++D +I ERQKQ+LL IY +F +N +E P +
Sbjct 73 LYVQAGILDERDRDEVETRAVILSDPSINERQKQVLLQIYDAFRKENALEADEAPGE 129
>gi|297193564|ref|ZP_06910962.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
gi|197718161|gb|EDY62069.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
Length=151
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/112 (59%), Positives = 85/112 (76%), Gaps = 2/112 (1%)
Query 15 ASDVASDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALR 74
AS ++G ++R QR A +S+RQLA+ +GVSNPYLSQ+ERGLRKPSA+VL Q+AKALR
Sbjct 8 ASLNVGNLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALR 67
Query 75 VSAEVLYVRAGILEPSETSQV--RDAIITDTAITERQKQILLDIYASFTHQN 124
+SAE LYVRAGIL+ E ++ R I+ D +I ERQKQ+LL IY SF +N
Sbjct 68 ISAETLYVRAGILDEQERDELETRAVILADPSINERQKQVLLQIYESFRKEN 119
>gi|317508728|ref|ZP_07966381.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC
BAA-974]
gi|316252976|gb|EFV12393.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC
BAA-974]
Length=137
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/117 (56%), Positives = 85/117 (73%), Gaps = 0/117 (0%)
Query 20 SDIGSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRVSAEV 79
DIG FIR+QRE A VS+RQLA+R+GVSNPYLSQ+ERGLR PSA V+ QIAKALR+SAE
Sbjct 15 GDIGEFIRTQRELAQVSLRQLAQRAGVSNPYLSQIERGLRNPSAQVMGQIAKALRLSAEA 74
Query 80 LYVRAGILEPSETSQVRDAIITDTAITERQKQILLDIYASFTHQNEATREECPSDPT 136
L +A +L E S+VR+A++ D +ITERQK+ L+ +Y +F + R+ P
Sbjct 75 LGTQAELLAEREPSRVREAVLADESITERQKEALVQVYEAFVQETSRARDLLRDQPN 131
Lambda K H
0.310 0.123 0.321
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130895291376
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40