BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0476 Length=87 Score E Sequences producing significant alignments: (Bits) Value gi|254230824|ref|ZP_04924151.1| hypothetical protein TBCG_00468 ... 168 2e-40 gi|167970702|ref|ZP_02552979.1| conserved transmembrane protein ... 168 3e-40 gi|15607617|ref|NP_214990.1| transmembrane protein [Mycobacteriu... 168 3e-40 gi|240169859|ref|ZP_04748518.1| transmembrane protein [Mycobacte... 150 4e-35 gi|183980825|ref|YP_001849116.1| transmembrane protein [Mycobact... 149 1e-34 gi|296168078|ref|ZP_06850144.1| transmembrane protein [Mycobacte... 149 1e-34 gi|254777111|ref|ZP_05218627.1| transmembrane protein [Mycobacte... 147 7e-34 gi|342859022|ref|ZP_08715676.1| transmembrane protein [Mycobacte... 146 8e-34 gi|41410067|ref|NP_962903.1| hypothetical protein MAP3969 [Mycob... 146 9e-34 gi|254819804|ref|ZP_05224805.1| transmembrane protein [Mycobacte... 145 2e-33 gi|118619639|ref|YP_907971.1| transmembrane protein [Mycobacteri... 143 8e-33 gi|15828328|ref|NP_302591.1| hypothetical protein ML2453 [Mycoba... 142 1e-32 gi|15214347|sp|Q9CB43.2|Y2453_MYCLE RecName: Full=Uncharacterize... 142 2e-32 gi|333989104|ref|YP_004521718.1| transmembrane protein [Mycobact... 113 8e-24 gi|120401824|ref|YP_951653.1| hypothetical protein Mvan_0809 [My... 107 8e-22 gi|315442343|ref|YP_004075222.1| hypothetical protein Mspyr1_068... 103 6e-21 gi|145220705|ref|YP_001131383.1| hypothetical protein Mflv_0099 ... 103 6e-21 gi|336460415|gb|EGO39313.1| Protein of unknown function (DUF2599... 99.0 2e-19 gi|118468340|ref|YP_885323.1| hypothetical protein MSMEG_0920 [M... 96.7 1e-18 gi|300782361|ref|YP_003762652.1| hypothetical protein AMED_0428 ... 77.4 7e-13 gi|108797624|ref|YP_637821.1| hypothetical protein Mmcs_0644 [My... 75.5 3e-12 gi|134103414|ref|YP_001109075.1| hypothetical protein SACE_6988 ... 75.1 3e-12 gi|226305079|ref|YP_002765037.1| hypothetical protein RER_15900 ... 73.6 8e-12 gi|302523791|ref|ZP_07276133.1| conserved hypothetical protein [... 72.4 2e-11 gi|257054327|ref|YP_003132159.1| hypothetical protein Svir_02500... 70.9 6e-11 gi|169631160|ref|YP_001704809.1| hypothetical protein MAB_4082c ... 70.9 6e-11 gi|256380755|ref|YP_003104415.1| hypothetical protein Amir_6772 ... 70.1 1e-10 gi|333918284|ref|YP_004491865.1| transmembrane protein [Amycolic... 69.7 1e-10 gi|84498443|ref|ZP_00997213.1| hypothetical protein JNB_16334 [J... 68.2 4e-10 gi|54027181|ref|YP_121423.1| hypothetical protein nfa52070 [Noca... 67.4 6e-10 gi|302552370|ref|ZP_07304712.1| conserved hypothetical protein [... 67.0 1e-09 gi|337766504|emb|CCB75215.1| putative membrane protein [Streptom... 66.6 1e-09 gi|256397329|ref|YP_003118893.1| hypothetical protein Caci_8229 ... 66.2 2e-09 gi|297158500|gb|ADI08212.1| hypothetical protein SBI_05092 [Stre... 64.7 4e-09 gi|312141147|ref|YP_004008483.1| integral membrane protein [Rhod... 64.7 4e-09 gi|326442442|ref|ZP_08217176.1| hypothetical protein SclaA2_1530... 64.3 6e-09 gi|254388549|ref|ZP_05003783.1| conserved hypothetical protein [... 64.3 6e-09 gi|302559933|ref|ZP_07312275.1| membrane protein [Streptomyces g... 63.2 1e-08 gi|111019096|ref|YP_702068.1| hypothetical protein RHA1_ro02103 ... 62.4 2e-08 gi|290959394|ref|YP_003490576.1| hypothetical protein SCAB_49861... 62.0 3e-08 gi|343925754|ref|ZP_08765269.1| hypothetical protein GOALK_050_0... 61.2 4e-08 gi|226361236|ref|YP_002779014.1| hypothetical protein ROP_18220 ... 61.2 5e-08 gi|345008311|ref|YP_004810665.1| hypothetical protein Strvi_0610... 60.1 1e-07 gi|297200610|ref|ZP_06918007.1| conserved hypothetical protein [... 59.3 2e-07 gi|302543612|ref|ZP_07295954.1| putative membrane protein [Strep... 59.3 2e-07 gi|291438800|ref|ZP_06578190.1| conserved hypothetical protein [... 59.3 2e-07 gi|21222596|ref|NP_628375.1| hypothetical protein SCO4200 [Strep... 59.3 2e-07 gi|239988823|ref|ZP_04709487.1| hypothetical protein SrosN1_1604... 58.9 2e-07 gi|329936214|ref|ZP_08286007.1| putative membrane protein [Strep... 57.4 7e-07 gi|182437782|ref|YP_001825501.1| hypothetical protein SGR_3989 [... 57.0 1e-06 >gi|254230824|ref|ZP_04924151.1| hypothetical protein TBCG_00468 [Mycobacterium tuberculosis C] gi|308231559|ref|ZP_07412911.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|308369402|ref|ZP_07417659.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002] 23 more sequence titles Length=95 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/87 (100%), Positives = 87/87 (100%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG Sbjct 9 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MAMSACASGVYLVDVRPKLLEIQGKSR Sbjct 69 MAMSACASGVYLVDVRPKLLEIQGKSR 95 >gi|167970702|ref|ZP_02552979.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|254549424|ref|ZP_05139871.1| hypothetical protein Mtube_03013 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294995983|ref|ZP_06801674.1| hypothetical protein Mtub2_16153 [Mycobacterium tuberculosis 210] gi|297632961|ref|ZP_06950741.1| hypothetical protein MtubK4_02501 [Mycobacterium tuberculosis KZN 4207] gi|297729936|ref|ZP_06959054.1| hypothetical protein MtubKR_02531 [Mycobacterium tuberculosis KZN R506] gi|313657265|ref|ZP_07814145.1| hypothetical protein MtubKV_02531 [Mycobacterium tuberculosis KZN V2475] gi|323721151|gb|EGB30213.1| membrane protein [Mycobacterium tuberculosis CDC1551A] Length=91 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 87/87 (100%), Positives = 87/87 (100%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG Sbjct 5 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 64 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MAMSACASGVYLVDVRPKLLEIQGKSR Sbjct 65 MAMSACASGVYLVDVRPKLLEIQGKSR 91 >gi|15607617|ref|NP_214990.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|31791656|ref|NP_854149.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|121636392|ref|YP_976615.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 45 more sequence titles Length=87 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 87/87 (100%), Positives = 87/87 (100%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG Sbjct 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MAMSACASGVYLVDVRPKLLEIQGKSR Sbjct 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 >gi|240169859|ref|ZP_04748518.1| transmembrane protein [Mycobacterium kansasii ATCC 12478] Length=91 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 78/87 (90%), Positives = 82/87 (95%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVAL SIL V GVLG Sbjct 5 MLVLQIAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALTSILGFVFGVLG 64 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQGKSR Sbjct 65 MAIAACAAGVYLVDVRPKLLEIQGKSR 91 >gi|183980825|ref|YP_001849116.1| transmembrane protein [Mycobacterium marinum M] gi|183174151|gb|ACC39261.1| conserved transmembrane protein [Mycobacterium marinum M] Length=95 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/87 (89%), Positives = 82/87 (95%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 +LVL +AVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVAL SIL V GVLG Sbjct 9 LLVLQIAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALTSILGFVFGVLG 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQGKSR Sbjct 69 MAIAACAAGVYLVDVRPKLLEIQGKSR 95 >gi|296168078|ref|ZP_06850144.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896885|gb|EFG76513.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=91 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/87 (89%), Positives = 81/87 (94%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILG AVAL SIL V GVLG Sbjct 5 MLVLQIAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGLAVALTSILSFVFGVLG 64 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQGKSR Sbjct 65 MAIAACAAGVYLVDVRPKLLEIQGKSR 91 >gi|254777111|ref|ZP_05218627.1| transmembrane protein [Mycobacterium avium subsp. avium ATCC 25291] Length=95 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 74/87 (86%), Positives = 81/87 (94%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTA+YAFVHAALQRPDAYTAADKLTKPVWL+ILG AVAL S+L V GVLG Sbjct 9 MLVLQIAVLVTAIYAFVHAALQRPDAYTAADKLTKPVWLLILGGAVALTSVLGYVFGVLG 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQGKSR Sbjct 69 MAIAACAAGVYLVDVRPKLLEIQGKSR 95 >gi|342859022|ref|ZP_08715676.1| transmembrane protein [Mycobacterium colombiense CECT 3035] gi|342133263|gb|EGT86466.1| transmembrane protein [Mycobacterium colombiense CECT 3035] Length=95 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 74/87 (86%), Positives = 81/87 (94%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTA+YAFVHAALQRPDAYTAA+KLTKPVWL+ILG AVAL SIL V GVLG Sbjct 9 MLVLQIAVLVTAIYAFVHAALQRPDAYTAAEKLTKPVWLLILGGAVALTSILGFVFGVLG 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQGKSR Sbjct 69 MAIAACAAGVYLVDVRPKLLEIQGKSR 95 >gi|41410067|ref|NP_962903.1| hypothetical protein MAP3969 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118462747|ref|YP_883802.1| hypothetical protein MAV_4674 [Mycobacterium avium 104] gi|41398900|gb|AAS06519.1| hypothetical protein MAP_3969 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164034|gb|ABK64931.1| conserved hypothetical protein [Mycobacterium avium 104] Length=87 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/87 (86%), Positives = 81/87 (94%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTA+YAFVHAALQRPDAYTAADKLTKPVWL+ILG AVAL S+L V GVLG Sbjct 1 MLVLQIAVLVTAIYAFVHAALQRPDAYTAADKLTKPVWLLILGGAVALTSVLGYVFGVLG 60 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQGKSR Sbjct 61 MAIAACAAGVYLVDVRPKLLEIQGKSR 87 >gi|254819804|ref|ZP_05224805.1| transmembrane protein [Mycobacterium intracellulare ATCC 13950] Length=95 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/87 (86%), Positives = 80/87 (92%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTA+YAFVHAALQRPDAYTAADKLTKPVWL+IL AVAL SIL V GVLG Sbjct 9 MLVLQIAVLVTAIYAFVHAALQRPDAYTAADKLTKPVWLLILAGAVALTSILGFVFGVLG 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQGKSR Sbjct 69 MAIAACAAGVYLVDVRPKLLEIQGKSR 95 >gi|118619639|ref|YP_907971.1| transmembrane protein [Mycobacterium ulcerans Agy99] gi|118571749|gb|ABL06500.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99] Length=95 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 74/87 (86%), Positives = 80/87 (92%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 +LVL +AVLVTAVYA VHAA+QRPDAYTAADKLTKPVWLVILGAAVAL SIL V GVLG Sbjct 9 LLVLQIAVLVTAVYAIVHAAMQRPDAYTAADKLTKPVWLVILGAAVALTSILGFVFGVLG 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 MA++ACA+GVYLVDVRPKLLEIQ KSR Sbjct 69 MAIAACAAGVYLVDVRPKLLEIQDKSR 95 >gi|15828328|ref|NP_302591.1| hypothetical protein ML2453 [Mycobacterium leprae TN] gi|221230805|ref|YP_002504221.1| hypothetical protein MLBr_02453 [Mycobacterium leprae Br4923] gi|13094021|emb|CAC31970.1| conserved membrane protein [Mycobacterium leprae] gi|219933912|emb|CAR72552.1| conserved membrane protein [Mycobacterium leprae Br4923] Length=95 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 73/87 (84%), Positives = 81/87 (94%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTAVYAFVHAALQRPDAYTAA+KLTKPVWLVILGAAV+L SIL V GVLG Sbjct 9 MLVLQLAVLVTAVYAFVHAALQRPDAYTAAEKLTKPVWLVILGAAVSLTSILGFVFGVLG 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 + ++ACA+GVYLVDVRPKLL+IQGKSR Sbjct 69 IVIAACAAGVYLVDVRPKLLDIQGKSR 95 >gi|15214347|sp|Q9CB43.2|Y2453_MYCLE RecName: Full=Uncharacterized protein ML2453; Flags: Precursor Length=87 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/87 (84%), Positives = 81/87 (94%), Gaps = 0/87 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTAVYAFVHAALQRPDAYTAA+KLTKPVWLVILGAAV+L SIL V GVLG Sbjct 1 MLVLQLAVLVTAVYAFVHAALQRPDAYTAAEKLTKPVWLVILGAAVSLTSILGFVFGVLG 60 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 + ++ACA+GVYLVDVRPKLL+IQGKSR Sbjct 61 IVIAACAAGVYLVDVRPKLLDIQGKSR 87 >gi|333989104|ref|YP_004521718.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333485072|gb|AEF34464.1| transmembrane protein [Mycobacterium sp. JDM601] Length=76 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 57/80 (72%), Positives = 67/80 (84%), Gaps = 4/80 (5%) Query 8 VLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACA 67 + TAVYAFVHAA+QR DAYTAADKLTKPVWLVILG + +L VL V+GMA++ACA Sbjct 1 MFATAVYAFVHAAMQRADAYTAADKLTKPVWLVILG----VCGLLALVLQVMGMAIAACA 56 Query 68 SGVYLVDVRPKLLEIQGKSR 87 +GVYLVDVRP+LLE+QGKS Sbjct 57 AGVYLVDVRPRLLEVQGKSH 76 >gi|120401824|ref|YP_951653.1| hypothetical protein Mvan_0809 [Mycobacterium vanbaalenii PYR-1] gi|119954642|gb|ABM11647.1| conserved membrane protein [Mycobacterium vanbaalenii PYR-1] Length=93 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/87 (73%), Positives = 73/87 (84%), Gaps = 4/87 (4%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 + L +AVLVT+ YAFVHAA+QRPDAYTAADKLTKPVWLVILG V LA VLG+ G Sbjct 11 LFALQIAVLVTSAYAFVHAAMQRPDAYTAADKLTKPVWLVILGVGVLLAL----VLGITG 66 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 +A++A A+GVYLVDVRPK+LEIQGKSR Sbjct 67 VAIAAVAAGVYLVDVRPKILEIQGKSR 93 >gi|315442343|ref|YP_004075222.1| hypothetical protein Mspyr1_06840 [Mycobacterium sp. Spyr1] gi|315260646|gb|ADT97387.1| Protein of unknown function (DUF2516) [Mycobacterium sp. Spyr1] Length=93 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/87 (71%), Positives = 73/87 (84%), Gaps = 4/87 (4%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 + L VAVLV +VY+FVHAA+QRPDAYTAADKLTKPVWLVILG V LA VLG+ G Sbjct 11 LFALQVAVLVASVYSFVHAAMQRPDAYTAADKLTKPVWLVILGVGVLLAL----VLGITG 66 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 +A++A A+GVY+VDVRPK+LE+QGKSR Sbjct 67 VAIAAVAAGVYIVDVRPKILEVQGKSR 93 >gi|145220705|ref|YP_001131383.1| hypothetical protein Mflv_0099 [Mycobacterium gilvum PYR-GCK] gi|145213191|gb|ABP42595.1| conserved membrane protein [Mycobacterium gilvum PYR-GCK] Length=108 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/87 (71%), Positives = 73/87 (84%), Gaps = 4/87 (4%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 + L VAVLV +VY+FVHAA+QRPDAYTAADKLTKPVWLVILG V LA VLG+ G Sbjct 26 LFALQVAVLVASVYSFVHAAMQRPDAYTAADKLTKPVWLVILGVGVLLAL----VLGITG 81 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 +A++A A+GVY+VDVRPK+LE+QGKSR Sbjct 82 VAIAAVAAGVYIVDVRPKILEVQGKSR 108 >gi|336460415|gb|EGO39313.1| Protein of unknown function (DUF2599)/Protein of unknown function (DUF2516) [Mycobacterium avium subsp. paratuberculosis S397] Length=230 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/61 (84%), Positives = 55/61 (91%), Gaps = 0/61 (0%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL +AVLVTA+YAFVHAALQRPDAYTAADKLTKPVWL+ILG AVAL S+L V GVLG Sbjct 1 MLVLQIAVLVTAIYAFVHAALQRPDAYTAADKLTKPVWLLILGGAVALTSVLGYVFGVLG 60 Query 61 M 61 M Sbjct 61 M 61 >gi|118468340|ref|YP_885323.1| hypothetical protein MSMEG_0920 [Mycobacterium smegmatis str. MC2 155] gi|118169627|gb|ABK70523.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=94 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/87 (66%), Positives = 65/87 (75%), Gaps = 3/87 (3%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 +LVL+ V VYA VHAA+QRPDAYTA KLTKPVWL+ILG + L +L G Sbjct 11 ILVLVALVFFVGVYALVHAAMQRPDAYTATGKLTKPVWLIILGVGLLLLLLLRDAFGA-- 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 A+SACA+GVYLVDVRPKLLEIQGKSR Sbjct 69 -AISACATGVYLVDVRPKLLEIQGKSR 94 >gi|300782361|ref|YP_003762652.1| hypothetical protein AMED_0428 [Amycolatopsis mediterranei U32] gi|299791875|gb|ADJ42250.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340523727|gb|AEK38932.1| hypothetical protein RAM_02200 [Amycolatopsis mediterranei S699] Length=97 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/75 (55%), Positives = 56/75 (75%), Gaps = 5/75 (6%) Query 12 AVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAM---SACAS 68 ++AFVHA LQR DAY+AAD+ TKP+W++I G A LA +L+PV+G GM + A+ Sbjct 19 GLFAFVHALLQRADAYSAADRKTKPIWMLITGGAT-LAMVLFPVMGP-GMIFYVPAMAAA 76 Query 69 GVYLVDVRPKLLEIQ 83 VY+VDVRPKL+E+Q Sbjct 77 LVYIVDVRPKLIEVQ 91 >gi|108797624|ref|YP_637821.1| hypothetical protein Mmcs_0644 [Mycobacterium sp. MCS] gi|119866711|ref|YP_936663.1| hypothetical protein Mkms_0657 [Mycobacterium sp. KMS] gi|126433248|ref|YP_001068939.1| hypothetical protein Mjls_0637 [Mycobacterium sp. JLS] gi|108768043|gb|ABG06765.1| conserved membrane protein [Mycobacterium sp. MCS] gi|119692800|gb|ABL89873.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126233048|gb|ABN96448.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=94 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/74 (68%), Positives = 57/74 (78%), Gaps = 3/74 (4%) Query 14 YAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLV 73 Y+FVHAA+QRPDAYTAA KLTKPVWL ILG V + + G A+ ACA+GVYLV Sbjct 24 YSFVHAAIQRPDAYTAAGKLTKPVWLAILGGGVLILLLF---RDAFGAAVCACAAGVYLV 80 Query 74 DVRPKLLEIQGKSR 87 DVRPK+LEIQGKSR Sbjct 81 DVRPKILEIQGKSR 94 >gi|134103414|ref|YP_001109075.1| hypothetical protein SACE_6988 [Saccharopolyspora erythraea NRRL 2338] gi|291006046|ref|ZP_06564019.1| hypothetical protein SeryN2_16110 [Saccharopolyspora erythraea NRRL 2338] gi|133916037|emb|CAM06150.1| hypothetical protein SACE_6988 [Saccharopolyspora erythraea NRRL 2338] Length=94 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/90 (50%), Positives = 60/90 (67%), Gaps = 9/90 (10%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILY----PVL 56 +L++ A + +YAFVHAALQR DA+TAADK+TKP WL I GA AL IL+ +L Sbjct 8 LLIIWGAGIPVGIYAFVHAALQRADAFTAADKMTKPAWLGITGAG-ALVLILFRGPMTIL 66 Query 57 GVLGMAMSACASGVYLVDVRPKLLEIQGKS 86 ++GM A VY+VDV+PK+ E+Q S Sbjct 67 WIIGM----VAVLVYIVDVKPKVTEVQKGS 92 >gi|226305079|ref|YP_002765037.1| hypothetical protein RER_15900 [Rhodococcus erythropolis PR4] gi|229490167|ref|ZP_04384014.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226184194|dbj|BAH32298.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229322915|gb|EEN88689.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=98 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/88 (55%), Positives = 59/88 (68%), Gaps = 3/88 (3%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 L L V LV AVYA VHA QRPDA+TA +KLTKP+WL IL A + PV G+LG Sbjct 12 FLALKVLALVGAVYAIVHAVRQRPDAFTAVNKLTKPIWLGILIVAALILLATSPV-GLLG 70 Query 61 MAMSACASGVYLVDVRPKLLEIQ-GKSR 87 + ++ A VYLVDVRP++ +IQ G SR Sbjct 71 I-IAVVAVCVYLVDVRPRVDDIQHGGSR 97 >gi|302523791|ref|ZP_07276133.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302432686|gb|EFL04502.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=96 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/78 (49%), Positives = 54/78 (70%), Gaps = 3/78 (3%) Query 12 AVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVL--GVLGMAMSACASG 69 ++AFVHA LQR DAY+AAD+ TKP+W++I G A LA +L+ + G + + A+ Sbjct 18 GLFAFVHALLQRADAYSAADRKTKPIWMLITGGAT-LALVLFQIQGPGFIFWVPAMAAAL 76 Query 70 VYLVDVRPKLLEIQGKSR 87 VY+VDVRPKL+E+Q R Sbjct 77 VYIVDVRPKLIEVQRGHR 94 >gi|257054327|ref|YP_003132159.1| hypothetical protein Svir_02500 [Saccharomonospora viridis DSM 43017] gi|256584199|gb|ACU95332.1| Protein of unknown function (DUF2516) [Saccharomonospora viridis DSM 43017] Length=99 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/85 (49%), Positives = 57/85 (68%), Gaps = 5/85 (5%) Query 2 LVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGM 61 LV+ A ++ ++AFVHA QR DA+TAAD+L+KP W+ I G A +A +L+ G GM Sbjct 10 LVIDWAGVLVGLFAFVHAVTQRADAFTAADRLSKPAWMAITGGAT-VAMLLFQFYGA-GM 67 Query 62 AM---SACASGVYLVDVRPKLLEIQ 83 + AS VY+VDVRPKL+E+Q Sbjct 68 IFWLAALVASLVYIVDVRPKLIEVQ 92 >gi|169631160|ref|YP_001704809.1| hypothetical protein MAB_4082c [Mycobacterium abscessus ATCC 19977] gi|169243127|emb|CAM64155.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=92 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/79 (54%), Positives = 55/79 (70%), Gaps = 2/79 (2%) Query 9 LVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACAS 68 L+ A+ A VHAA+Q DA+ AA+K TK W+VIL A L L P L +L ++A A+ Sbjct 16 LIAAIVALVHAAIQPADAFVAAEKQTKTTWVVILAGAAVLT--LIPGLELLTAGIAAVAA 73 Query 69 GVYLVDVRPKLLEIQGKSR 87 GVY VDVRP++LE+QGKSR Sbjct 74 GVYFVDVRPRVLEVQGKSR 92 >gi|256380755|ref|YP_003104415.1| hypothetical protein Amir_6772 [Actinosynnema mirum DSM 43827] gi|255925058|gb|ACU40569.1| hypothetical protein Amir_6772 [Actinosynnema mirum DSM 43827] Length=107 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/81 (47%), Positives = 51/81 (63%), Gaps = 3/81 (3%) Query 9 LVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMA--MSAC 66 L V+AF HA QR +AY AA+++TKP W+ I G ALA +L+ + G GM + Sbjct 27 LFAGVFAFAHAVTQRAEAYQAAERMTKPAWMGITGGG-ALALLLFSLNGAGGMFWLIGVT 85 Query 67 ASGVYLVDVRPKLLEIQGKSR 87 A VYLVDVRP+L+E+Q R Sbjct 86 AVSVYLVDVRPRLIEVQRGPR 106 >gi|333918284|ref|YP_004491865.1| transmembrane protein [Amycolicicoccus subflavus DQS3-9A1] gi|333480505|gb|AEF39065.1| Transmembrane protein [Amycolicicoccus subflavus DQS3-9A1] Length=93 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/86 (46%), Positives = 54/86 (63%), Gaps = 2/86 (2%) Query 2 LVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGM 61 L+L +A + +A VHA QRPDA+ A DKLTKPVWL ILG + ++ + +LG Sbjct 9 LLLTLAAIGAGAFAVVHAVRQRPDAFPAVDKLTKPVWLAILGVS-TFVLFVFNLPSLLGF 67 Query 62 AMSACASGVYLVDVRPKLLEIQGKSR 87 ++ A GVYL DVRP++ E+Q R Sbjct 68 -VAVIAIGVYLADVRPRVDEVQRGPR 92 >gi|84498443|ref|ZP_00997213.1| hypothetical protein JNB_16334 [Janibacter sp. HTCC2649] gi|84381186|gb|EAP97070.1| hypothetical protein JNB_16334 [Janibacter sp. HTCC2649] Length=108 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/87 (48%), Positives = 52/87 (60%), Gaps = 2/87 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASI-LYPVLGVL 59 ML L +A L V+AFVHA R DA+ AA K TK WL + G AV L + L + L Sbjct 12 MLALTIAALAVEVFAFVHALRTRADAFAAAGKRTKNFWLAVTGVAVLLGFVALGGAVLFL 71 Query 60 GMAMSACASGVYLVDVRPKLLEIQGKS 86 GM ++ A+GVYL DVRP + +QGK Sbjct 72 GM-IAVAAAGVYLADVRPAVESVQGKG 97 >gi|54027181|ref|YP_121423.1| hypothetical protein nfa52070 [Nocardia farcinica IFM 10152] gi|54018689|dbj|BAD60059.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=95 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/87 (51%), Positives = 58/87 (67%), Gaps = 1/87 (1%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 +LVL +A L ++A +HA QRPDA+TA DK TKP+WL ILG AV L + LG+L Sbjct 9 LLVLWLAALGATIFALIHAIRQRPDAFTAVDKQTKPIWLAILGVAVLLLLLSAGGLGLLA 68 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 +S A+G+YL DVRPK+ E+Q R Sbjct 69 F-VSIIATGIYLADVRPKVDEVQRGPR 94 >gi|302552370|ref|ZP_07304712.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302469988|gb|EFL33081.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length=115 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/87 (43%), Positives = 59/87 (68%), Gaps = 2/87 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 M +L +A++V + +A + AA++R DAY AADK TKP WL++LG A + ++L+P+L L Sbjct 13 MWLLSMALIVFSGFALIDAAVRREDAYRAADKKTKPFWLIVLGIAF-VVNLLFPILSFLP 71 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 + + A+ VY+VDVRP + + G R Sbjct 72 I-IGLIATIVYMVDVRPAIRALPGGGR 97 >gi|337766504|emb|CCB75215.1| putative membrane protein [Streptomyces cattleya NRRL 8057] Length=118 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/77 (54%), Positives = 54/77 (71%), Gaps = 2/77 (2%) Query 6 VAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSA 65 VA+LV +V AFV AA+ R DAY AADK TKP WLVILG + AL ++P+L L + + Sbjct 22 VALLVFSVVAFVDAAVHREDAYRAADKKTKPFWLVILGLS-ALVMGIFPLLSFLPV-IGL 79 Query 66 CASGVYLVDVRPKLLEI 82 A+ VY+VDVRP L ++ Sbjct 80 VATIVYMVDVRPALRQV 96 >gi|256397329|ref|YP_003118893.1| hypothetical protein Caci_8229 [Catenulispora acidiphila DSM 44928] gi|256363555|gb|ACU77052.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length=108 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/88 (48%), Positives = 56/88 (64%), Gaps = 10/88 (11%) Query 3 VLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVA---LASILYPVLGVL 59 ++ +AVLV + V AAL+R DAY AA KLTKP WL+IL A+A L +L+ ++GV+ Sbjct 16 IISLAVLVGQIVVLVDAALRREDAYRAAGKLTKPGWLIILTVAIAANMLLGLLFTIIGVV 75 Query 60 GMAMSACASGVYLVDVRPKLLEIQGKSR 87 +AM VY VDVRP L E+ G R Sbjct 76 -VAM------VYWVDVRPALKEVSGSKR 96 >gi|297158500|gb|ADI08212.1| hypothetical protein SBI_05092 [Streptomyces bingchenggensis BCW-1] Length=117 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/83 (44%), Positives = 52/83 (63%), Gaps = 6/83 (7%) Query 7 AVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILG--AAVALASILYPVLGVLGMAMS 64 +L+ ++ AF+ AA++R DAY AADK KP WL+ILG AAV ++ L ++G+ Sbjct 19 GLLLFSLCAFIDAAIRREDAYRAADKQNKPFWLIILGIAAAVNFFMGIFDFLPIIGL--- 75 Query 65 ACASGVYLVDVRPKLLEIQGKSR 87 A+ VY VDVRP L ++ G R Sbjct 76 -IATIVYFVDVRPALRQVSGGGR 97 >gi|312141147|ref|YP_004008483.1| integral membrane protein [Rhodococcus equi 103S] gi|325674031|ref|ZP_08153721.1| transmembrane protein [Rhodococcus equi ATCC 33707] gi|311890486|emb|CBH49804.1| putative integral membrane protein [Rhodococcus equi 103S] gi|325555296|gb|EGD24968.1| transmembrane protein [Rhodococcus equi ATCC 33707] Length=97 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/75 (50%), Positives = 52/75 (70%), Gaps = 2/75 (2%) Query 13 VYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYL 72 V+A HAA QR DA+TA DKL+KP+WL IL A++ L L+ + +LG+ ++ A VYL Sbjct 24 VFAIFHAARQRKDAFTAVDKLSKPIWLGILIASL-LVVFLFGAVHMLGI-IAVVAICVYL 81 Query 73 VDVRPKLLEIQGKSR 87 VDVRP++ +IQ R Sbjct 82 VDVRPRVDDIQRGPR 96 >gi|326442442|ref|ZP_08217176.1| hypothetical protein SclaA2_15309 [Streptomyces clavuligerus ATCC 27064] Length=116 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/82 (49%), Positives = 52/82 (64%), Gaps = 3/82 (3%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLV+ + LVT+V AF A R DA+ AADK TKP WL+ILG AVA+ L+ + L Sbjct 14 MLVVYLVFLVTSVTAFAMALFAREDAFRAADKQTKPFWLIILGIAVAVN--LFTSMLFLS 71 Query 61 MAMSACASGVYLVDVRPKLLEI 82 +A AS V+ VDVRP L ++ Sbjct 72 LA-GLIASIVFFVDVRPALAQV 92 >gi|254388549|ref|ZP_05003783.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294814038|ref|ZP_06772681.1| DUF2516 domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197702270|gb|EDY48082.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294326637|gb|EFG08280.1| DUF2516 domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length=113 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/82 (49%), Positives = 52/82 (64%), Gaps = 3/82 (3%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLV+ + LVT+V AF A R DA+ AADK TKP WL+ILG AVA+ L+ + L Sbjct 11 MLVVYLVFLVTSVTAFAMALFAREDAFRAADKQTKPFWLIILGIAVAVN--LFTSMLFLS 68 Query 61 MAMSACASGVYLVDVRPKLLEI 82 +A AS V+ VDVRP L ++ Sbjct 69 LA-GLIASIVFFVDVRPALAQV 89 >gi|302559933|ref|ZP_07312275.1| membrane protein [Streptomyces griseoflavus Tu4000] gi|302477551|gb|EFL40644.1| membrane protein [Streptomyces griseoflavus Tu4000] Length=112 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/92 (43%), Positives = 55/92 (60%), Gaps = 12/92 (13%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILY-----PV 55 M +L +A++V + +A + AA +R DAY AADK TKP WL+ILG A + I PV Sbjct 10 MWLLSMALIVFSGFALIDAATRREDAYRAADKKTKPFWLIILGLAFVVNLIFNILSFLPV 69 Query 56 LGVLGMAMSACASGVYLVDVRPKLLEIQGKSR 87 +G++ A+ VY+VDVRP L + G R Sbjct 70 IGLI-------ATIVYMVDVRPALRGLPGGGR 94 >gi|111019096|ref|YP_702068.1| hypothetical protein RHA1_ro02103 [Rhodococcus jostii RHA1] gi|110818626|gb|ABG93910.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=97 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/87 (46%), Positives = 57/87 (66%), Gaps = 2/87 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 +LV+ + L A YA HAA QR DA+TA DKL+KP+WL IL A L +L+P + + G Sbjct 12 LLVIRIVALGGAAYALFHAARQRKDAFTAVDKLSKPIWLSIL-AVAFLVLLLFPAVQLFG 70 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 + ++ A VYLVDVRP++ ++Q R Sbjct 71 I-VAVVAVCVYLVDVRPRVDDVQRGPR 96 >gi|290959394|ref|YP_003490576.1| hypothetical protein SCAB_49861 [Streptomyces scabiei 87.22] gi|260648920|emb|CBG72034.1| putative membrane protein [Streptomyces scabiei 87.22] Length=118 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/82 (46%), Positives = 55/82 (68%), Gaps = 2/82 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 M +L +AV+ A +A + AA +R DA+ A DK TK WL+ILG A+ + S+L+P+L L Sbjct 14 MGLLQLAVIALAAFALIDAAFRREDAFRATDKQTKVFWLIILGIAL-VVSLLFPILSFLP 72 Query 61 MAMSACASGVYLVDVRPKLLEI 82 + + AS VY+VDVRP + +I Sbjct 73 I-IGLIASIVYIVDVRPAVRQI 93 >gi|343925754|ref|ZP_08765269.1| hypothetical protein GOALK_050_00490 [Gordonia alkanivorans NBRC 16433] gi|343764105|dbj|GAA12195.1| hypothetical protein GOALK_050_00490 [Gordonia alkanivorans NBRC 16433] Length=107 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/86 (47%), Positives = 56/86 (66%), Gaps = 2/86 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 MLVL V + AV A +HAA+QRPDA+ A D+ +K +W+ IL AA +L + + LG Sbjct 18 MLVLTVVAGIAAVVALIHAAIQRPDAFPAVDRQSKVIWVAILAAA-SLFIWFFGAVSFLG 76 Query 61 MAMSACASGVYLVDVRPKLLEIQGKS 86 + + A VYLVDVR ++ +IQGKS Sbjct 77 I-IGVVAMLVYLVDVRKRVDDIQGKS 101 >gi|226361236|ref|YP_002779014.1| hypothetical protein ROP_18220 [Rhodococcus opacus B4] gi|226239721|dbj|BAH50069.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=97 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/87 (45%), Positives = 57/87 (66%), Gaps = 2/87 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 +LV+ + L A +A HAA QR DA+TA DKL+KP+WL IL A L +L+P + + G Sbjct 12 LLVIRIVALGGAAFALFHAARQRKDAFTAVDKLSKPIWLSIL-AVAFLVLLLFPAVQLFG 70 Query 61 MAMSACASGVYLVDVRPKLLEIQGKSR 87 + ++ A VYLVDVRP++ ++Q R Sbjct 71 I-VAVVAVCVYLVDVRPRVDDVQRGPR 96 >gi|345008311|ref|YP_004810665.1| hypothetical protein Strvi_0610 [Streptomyces violaceusniger Tu 4113] gi|344034660|gb|AEM80385.1| Protein of unknown function DUF2516 [Streptomyces violaceusniger Tu 4113] Length=114 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/82 (42%), Positives = 53/82 (65%), Gaps = 12/82 (14%) Query 7 AVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASIL-----YPVLGVLGM 61 A+L+ +++AFV +A++R DAY AADK TK WL+ILG A A+ + P++G++ Sbjct 16 ALLLFSLFAFVDSAIRRDDAYRAADKQTKAFWLIILGLAAAVNFFMGILDFLPIIGLI-- 73 Query 62 AMSACASGVYLVDVRPKLLEIQ 83 A+ VY+VDVRP L ++ Sbjct 74 -----ATIVYIVDVRPALRQVS 90 >gi|297200610|ref|ZP_06918007.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197709741|gb|EDY53775.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length=114 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/77 (45%), Positives = 53/77 (69%), Gaps = 2/77 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 M +L +A++V + +A AA++R DAY AADK TKP WL+ILG A + ++++ +L L Sbjct 10 MWLLSMALIVFSGFALFDAAIRREDAYRAADKKTKPFWLIILGLAF-VVNLIFNILSFLP 68 Query 61 MAMSACASGVYLVDVRP 77 + + A+ VY+VDVRP Sbjct 69 I-IGLVATIVYMVDVRP 84 >gi|302543612|ref|ZP_07295954.1| putative membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302461230|gb|EFL24323.1| putative membrane protein [Streptomyces himastatinicus ATCC 53653] Length=115 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/82 (40%), Positives = 52/82 (64%), Gaps = 12/82 (14%) Query 7 AVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASIL-----YPVLGVLGM 61 +L+ +++AFV + ++R DAY AA+K TKP W++ILG A A+ + P++G++ Sbjct 16 GLLLFSLFAFVDSVIRREDAYRAANKQTKPFWMIILGLAAAVNFFMGIMSFLPIIGLI-- 73 Query 62 AMSACASGVYLVDVRPKLLEIQ 83 A+ VY+VDVRP L +I Sbjct 74 -----ATIVYIVDVRPALRQIS 90 >gi|291438800|ref|ZP_06578190.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291341695|gb|EFE68651.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length=112 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/79 (44%), Positives = 54/79 (69%), Gaps = 2/79 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 M +L +A+++ + +A + AA +R DAY AADK TKP WL+ILG A + ++++ +L L Sbjct 10 MWLLSMALILFSGFALIDAATRREDAYRAADKKTKPFWLIILGLAF-VVNLIFNILSFLP 68 Query 61 MAMSACASGVYLVDVRPKL 79 + + A+ VY+VDVRP L Sbjct 69 I-IGLIATIVYMVDVRPAL 86 >gi|21222596|ref|NP_628375.1| hypothetical protein SCO4200 [Streptomyces coelicolor A3(2)] gi|289770222|ref|ZP_06529600.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|9857157|emb|CAC04036.1| putative membrane protein [Streptomyces coelicolor A3(2)] gi|289700421|gb|EFD67850.1| conserved hypothetical protein [Streptomyces lividans TK24] Length=113 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/77 (43%), Positives = 53/77 (69%), Gaps = 2/77 (2%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 M +L +A+++ + +A + AA +R DAY AADK TKP WL+ILG A + ++++ +L L Sbjct 10 MWLLSIALILFSGFALIDAATRREDAYRAADKKTKPFWLIILGLAF-VVNLIFNILSFLP 68 Query 61 MAMSACASGVYLVDVRP 77 + + A+ VY+VDVRP Sbjct 69 I-IGLIATIVYMVDVRP 84 >gi|239988823|ref|ZP_04709487.1| hypothetical protein SrosN1_16047 [Streptomyces roseosporus NRRL 11379] gi|291445814|ref|ZP_06585204.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291348761|gb|EFE75665.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length=114 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/73 (55%), Positives = 49/73 (68%), Gaps = 3/73 (4%) Query 10 VTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASG 69 V AV AFV AA R DAY AADK K WL+ILG AVA+ ++L P+L L +A AS Sbjct 19 VLAVVAFVFAATAREDAYRAADKKKKSFWLIILGIAVAV-NLLIPML-FLQLA-GVVASI 75 Query 70 VYLVDVRPKLLEI 82 V++VDVRP L E+ Sbjct 76 VFMVDVRPALKEV 88 >gi|329936214|ref|ZP_08286007.1| putative membrane protein [Streptomyces griseoaurantiacus M045] gi|329304324|gb|EGG48204.1| putative membrane protein [Streptomyces griseoaurantiacus M045] Length=137 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/79 (54%), Positives = 52/79 (66%), Gaps = 3/79 (3%) Query 1 MLVLLVAVLVTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLG 60 M +L A+LV AV A V AAL R DAY AADK TK WL+ILG VA+ ++L P+L L Sbjct 33 MWLLYTAMLVLAVVALVMAALFRDDAYRAADKKTKGFWLIILGVTVAV-NLLIPML-FLQ 90 Query 61 MAMSACASGVYLVDVRPKL 79 +A A+ V+ VDVRP L Sbjct 91 LA-GLVATIVFFVDVRPAL 108 >gi|182437782|ref|YP_001825501.1| hypothetical protein SGR_3989 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778416|ref|ZP_08237681.1| Protein of unknown function DUF2516 [Streptomyces cf. griseus XylebKG-1] gi|178466298|dbj|BAG20818.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658749|gb|EGE43595.1| Protein of unknown function DUF2516 [Streptomyces griseus XylebKG-1] Length=111 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/70 (56%), Positives = 47/70 (68%), Gaps = 3/70 (4%) Query 10 VTAVYAFVHAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASG 69 V AV AFV AA R DAY AADK K WL+ILG AVA+ ++L P+L L +A AS Sbjct 19 VLAVVAFVFAATAREDAYRAADKKKKSFWLIILGIAVAV-NLLIPML-FLQLA-GVVASI 75 Query 70 VYLVDVRPKL 79 V++VDVRP L Sbjct 76 VFMVDVRPAL 85 Lambda K H 0.327 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130552747860 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40