BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0485 Length=438 Score E Sequences producing significant alignments: (Bits) Value gi|15607626|ref|NP_214999.1| transcriptional regulatory protein ... 858 0.0 gi|289573072|ref|ZP_06453299.1| transcriptional regulator [Mycob... 856 0.0 gi|340625511|ref|YP_004743963.1| putative transcriptional regula... 855 0.0 gi|254777102|ref|ZP_05218618.1| ROK family protein [Mycobacteriu... 673 0.0 gi|240169868|ref|ZP_04748527.1| putative transcriptional regulat... 669 0.0 gi|342859013|ref|ZP_08715667.1| ROK family protein [Mycobacteriu... 654 0.0 gi|41410076|ref|NP_962912.1| hypothetical protein MAP3978 [Mycob... 654 0.0 gi|336460433|gb|EGO39330.1| transcriptional regulator/sugar kina... 654 0.0 gi|296168087|ref|ZP_06850153.1| transcriptional regulatory prote... 638 0.0 gi|183980835|ref|YP_001849126.1| transcriptional regulatory prot... 625 4e-177 gi|118619648|ref|YP_907980.1| transcriptional regulatory protein... 618 7e-175 gi|315442355|ref|YP_004075234.1| transcriptional regulator/sugar... 558 7e-157 gi|169631138|ref|YP_001704787.1| hypothetical protein MAB_4059c ... 556 2e-156 gi|145220693|ref|YP_001131371.1| ROK family protein [Mycobacteri... 553 2e-155 gi|118469375|ref|YP_885335.1| ROK family protein [Mycobacterium ... 550 2e-154 gi|289744184|ref|ZP_06503562.1| transcriptional regulatory prote... 548 1e-153 gi|108797636|ref|YP_637833.1| ROK domain-containing protein [Myc... 536 2e-150 gi|333989114|ref|YP_004521728.1| transcriptional regulator [Myco... 519 4e-145 gi|298523963|ref|ZP_07011372.1| transcriptional regulatory prote... 503 2e-140 gi|120401841|ref|YP_951670.1| ROK family protein [Mycobacterium ... 476 3e-132 gi|226361167|ref|YP_002778945.1| NagC family transcriptional reg... 414 2e-113 gi|111019074|ref|YP_702046.1| ROK family transcriptional regulat... 410 2e-112 gi|229490556|ref|ZP_04384394.1| ROK family protein [Rhodococcus ... 400 2e-109 gi|226305098|ref|YP_002765056.1| NagC family transcriptional reg... 400 3e-109 gi|289748975|ref|ZP_06508353.1| transcriptional regulatory prote... 377 2e-102 gi|54022245|ref|YP_116487.1| putative transcriptional regulator ... 374 1e-101 gi|325674057|ref|ZP_08153747.1| ROK family transcriptional regul... 362 9e-98 gi|312141123|ref|YP_004008459.1| rok family protein [Rhodococcus... 362 9e-98 gi|254822046|ref|ZP_05227047.1| ROK family protein [Mycobacteriu... 355 9e-96 gi|333921555|ref|YP_004495136.1| putative ROK family transcripti... 347 3e-93 gi|343925370|ref|ZP_08764890.1| putative NagC family transcripti... 337 2e-90 gi|296394473|ref|YP_003659357.1| ROK family protein [Segniliparu... 333 4e-89 gi|317508249|ref|ZP_07965929.1| ROK family protein [Segniliparus... 330 3e-88 gi|326383578|ref|ZP_08205264.1| ROK family protein [Gordonia neo... 325 7e-87 gi|262204331|ref|YP_003275539.1| ROK family protein [Gordonia br... 318 8e-85 gi|296137968|ref|YP_003645211.1| ROK family protein [Tsukamurell... 313 3e-83 gi|262200803|ref|YP_003272011.1| ROK family protein [Gordonia br... 283 4e-74 gi|343925774|ref|ZP_08765289.1| putative NagC family transcripti... 263 6e-68 gi|326384029|ref|ZP_08205712.1| ROK family protein [Gordonia neo... 243 6e-62 gi|289568405|ref|ZP_06448632.1| transcriptional regulator [Mycob... 242 9e-62 gi|134099830|ref|YP_001105491.1| ROK family transcriptional regu... 229 1e-57 gi|257056317|ref|YP_003134149.1| transcriptional regulator/sugar... 224 3e-56 gi|254819813|ref|ZP_05224814.1| ROK family protein [Mycobacteriu... 219 9e-55 gi|213863348|ref|ZP_03386603.1| transcriptional regulator [Salmo... 164 4e-38 gi|302551425|ref|ZP_07303767.1| ROK-family transcriptional regul... 151 2e-34 gi|345002919|ref|YP_004805773.1| ROK family protein [Streptomyce... 146 8e-33 gi|256392953|ref|YP_003114517.1| ROK family protein [Catenulispo... 137 2e-30 gi|29831963|ref|NP_826597.1| transcriptional regulator [Streptom... 137 3e-30 gi|290960354|ref|YP_003491536.1| hypothetical protein SCAB_59791... 136 6e-30 gi|288919294|ref|ZP_06413629.1| ROK family protein [Frankia sp. ... 136 7e-30 >gi|15607626|ref|NP_214999.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839875|ref|NP_334912.1| NagC-related protein [Mycobacterium tuberculosis CDC1551] gi|31791665|ref|NP_854158.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] 70 more sequence titles Length=438 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/438 (99%), Positives = 438/438 (100%), Gaps = 0/438 (0%) Query 1 VYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 +YSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS Sbjct 1 MYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 Query 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS Sbjct 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 Query 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA Sbjct 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 Query 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY Sbjct 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 Query 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII Sbjct 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 Query 301 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG Sbjct 301 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 Query 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR Sbjct 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 Query 421 RSGALDARLQDTAPEALA 438 RSGALDARLQDTAPEALA Sbjct 421 RSGALDARLQDTAPEALA 438 >gi|289573072|ref|ZP_06453299.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289537503|gb|EFD42081.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length=438 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/438 (99%), Positives = 437/438 (99%), Gaps = 0/438 (0%) Query 1 VYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 +YSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS Sbjct 1 MYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 Query 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS Sbjct 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 Query 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA Sbjct 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 Query 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY Sbjct 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 Query 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII Sbjct 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 Query 301 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 PGIASRTRTGGSA AITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG Sbjct 301 PGIASRTRTGGSAIAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 Query 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR Sbjct 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 Query 421 RSGALDARLQDTAPEALA 438 RSGALDARLQDTAPEALA Sbjct 421 RSGALDARLQDTAPEALA 438 >gi|340625511|ref|YP_004743963.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340003701|emb|CCC42825.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] Length=438 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/438 (99%), Positives = 437/438 (99%), Gaps = 0/438 (0%) Query 1 VYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 +YSTNRTSQSLSR PGRKHQLRSHRY+MPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS Sbjct 1 MYSTNRTSQSLSRTPGRKHQLRSHRYIMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 Query 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS Sbjct 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 Query 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA Sbjct 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 Query 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY Sbjct 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 Query 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII Sbjct 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 Query 301 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG Sbjct 301 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 Query 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR Sbjct 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 Query 421 RSGALDARLQDTAPEALA 438 RSGALDARLQDTAPEALA Sbjct 421 RSGALDARLQDTAPEALA 438 >gi|254777102|ref|ZP_05218618.1| ROK family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=428 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/423 (83%), Positives = 372/423 (88%), Gaps = 1/423 (0%) Query 11 LSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNR 70 + PG K R ++PP+LH+ +SAAASVFRAVRLRGPVGRDVIA TSLSIATVNR Sbjct 1 MGHAPGPKPHRAVRRQIVPPALHIPESAAASVFRAVRLRGPVGRDVIANVTSLSIATVNR 60 Query 71 QVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRT 130 QVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRT Sbjct 61 QVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRT 120 Query 131 LDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLG 190 LDTVETPTPRN AG AL SLADSA YL+RW RRR LW+GV +GG VDSATG VDHPRLG Sbjct 121 LDTVETPTPRNPAGPALASLADSARCYLRRWHRRRPLWIGVAIGGTVDSATGQVDHPRLG 180 Query 191 WRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALM 250 WRQAPVG VLADALGLPVSVASHVDAMAGAEL+LGMRRF PSS TSLYVYARETVGYAL+ Sbjct 181 WRQAPVGQVLADALGLPVSVASHVDAMAGAELLLGMRRFLPSSPTSLYVYARETVGYALV 240 Query 251 IGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTG 310 IGGRVH P SGPGTIA LP HSE+LGGTGQLESTVSDEAV+A AR+LRI+P A R Sbjct 241 IGGRVHVPTSGPGTIATLPAHSELLGGTGQLESTVSDEAVVAVARQLRILP-FAPANRAS 299 Query 311 GSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEA 370 GSA I DLLRVARAGN+QA+ELLAER RVLG AVALLRD+LNPDE+VVGGQAFTEYPEA Sbjct 300 GSAAGIADLLRVARAGNEQARELLAERGRVLGEAVALLRDMLNPDELVVGGQAFTEYPEA 359 Query 371 MEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQ 430 MEQVEAAF A SVL PRDIR+T FGNRVQEAGAG VSLSGLYADPL A+RR+GALDARL+ Sbjct 360 MEQVEAAFAARSVLGPRDIRLTAFGNRVQEAGAGTVSLSGLYADPLSAMRRAGALDARLR 419 Query 431 DTA 433 + A Sbjct 420 EVA 422 >gi|240169868|ref|ZP_04748527.1| putative transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=433 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/438 (83%), Positives = 386/438 (89%), Gaps = 5/438 (1%) Query 1 VYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 ++ST T+ +P R + R +R V+PPSLHL+DSAAASVFRAVRLRGPVGRDVIA Sbjct 1 MHSTTLTTH----RPARGGRPRPYRQVVPPSLHLADSAAASVFRAVRLRGPVGRDVIANV 56 Query 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 TSLSIATVNRQVIALL+AGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS Sbjct 57 TSLSIATVNRQVIALLDAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 116 Query 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 IVA DLFGRTLD VETPTP + AG AL SLADSA RYL+RW RRRALW GV +GG VD A Sbjct 117 IVAADLFGRTLDAVETPTPLSPAGTALGSLADSACRYLRRWHRRRALWAGVAIGGTVDGA 176 Query 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 TGHVDHPRLGW++APVGPVLADALGLPVSVASHVDAMAGAEL+LGMRRFAP SSTSLYVY Sbjct 177 TGHVDHPRLGWQRAPVGPVLADALGLPVSVASHVDAMAGAELLLGMRRFAPGSSTSLYVY 236 Query 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 ARETVGYAL+I GRVHCPASGPGTIA LP SE+LGGTGQLESTVSDEAVLAAARRLRI+ Sbjct 237 ARETVGYALVIDGRVHCPASGPGTIAGLPARSELLGGTGQLESTVSDEAVLAAARRLRIL 296 Query 301 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 P AS TR GSA A+TDLLR ARAGNQQA +LLAERARVLG +VALLRDLLNPDE+VVG Sbjct 297 PA-ASATRANGSAGAVTDLLRAARAGNQQAGDLLAERARVLGESVALLRDLLNPDELVVG 355 Query 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 GQAFTEYPE MEQVE AF A SVL PRDIRVT FGNRVQEAGAGIVSL GLYADPLGA+R Sbjct 356 GQAFTEYPEGMEQVEKAFAACSVLPPRDIRVTAFGNRVQEAGAGIVSLGGLYADPLGAMR 415 Query 421 RSGALDARLQDTAPEALA 438 R+GALD RL DT P ALA Sbjct 416 RAGALDTRLPDTEPGALA 433 >gi|342859013|ref|ZP_08715667.1| ROK family protein [Mycobacterium colombiense CECT 3035] gi|342133254|gb|EGT86457.1| ROK family protein [Mycobacterium colombiense CECT 3035] Length=416 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/411 (85%), Positives = 371/411 (91%), Gaps = 1/411 (0%) Query 25 RYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRER 84 R ++PP+L++ DSAAASVFRAVRLRGPVGRDVIAG TSLSIATVNRQVIALLEAGLLRER Sbjct 3 RQIVPPALNIPDSAAASVFRAVRLRGPVGRDVIAGVTSLSIATVNRQVIALLEAGLLRER 62 Query 85 ADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAG 144 ADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRN AG Sbjct 63 ADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNPAG 122 Query 145 AALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADAL 204 AL +LADSA RYL+RW RRR LWVGV +GG VD ATG VDHPRLGWRQAPVGPVLADAL Sbjct 123 PALATLADSARRYLRRWHRRRPLWVGVAIGGTVDGATGQVDHPRLGWRQAPVGPVLADAL 182 Query 205 GLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGT 264 GLPVSVASHVDAMAGAEL+LGMRRF PSS TSLYVYARETVGYAL+IGGRVH P SGPGT Sbjct 183 GLPVSVASHVDAMAGAELLLGMRRFLPSSPTSLYVYARETVGYALVIGGRVHVPTSGPGT 242 Query 265 IAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVAR 324 IA LP HSE+LGGTGQLESTVSDEAV+A AR+ RI+P A R GSAT I++LLRVAR Sbjct 243 IATLPAHSELLGGTGQLESTVSDEAVVAVARQQRILP-FAPANRPNGSATGISELLRVAR 301 Query 325 AGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVL 384 AGNQQAK+LLAER RVLG AVALLRD+LNPDE+VVGGQAFTEYPEAMEQVEAAF SVL Sbjct 302 AGNQQAKDLLAERGRVLGEAVALLRDMLNPDELVVGGQAFTEYPEAMEQVEAAFVERSVL 361 Query 385 APRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQDTAPE 435 PRDIR+T FGNRVQEAGAG VSLSGLYADPLGA+RR+GALDARL D + + Sbjct 362 GPRDIRLTAFGNRVQEAGAGTVSLSGLYADPLGAMRRAGALDARLHDVSSD 412 >gi|41410076|ref|NP_962912.1| hypothetical protein MAP3978 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464805|ref|YP_883794.1| ROK family protein [Mycobacterium avium 104] gi|41398909|gb|AAS06528.1| hypothetical protein MAP_3978 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118166092|gb|ABK66989.1| ROK family protein [Mycobacterium avium 104] Length=428 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/423 (83%), Positives = 373/423 (89%), Gaps = 1/423 (0%) Query 11 LSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNR 70 + PG K R ++PP+LH+ +SAAASVFRAVRLRGPVGRDVIA TSLSIATVNR Sbjct 1 MGHAPGPKPHRAVRRQIVPPALHIPESAAASVFRAVRLRGPVGRDVIANVTSLSIATVNR 60 Query 71 QVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRT 130 QVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRT Sbjct 61 QVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRT 120 Query 131 LDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLG 190 LDTVETPTPRN AG AL SLADSA RYL+RW RRR LW+GV +GG VDSATG VDHPRLG Sbjct 121 LDTVETPTPRNPAGPALASLADSARRYLRRWHRRRPLWIGVAIGGTVDSATGQVDHPRLG 180 Query 191 WRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALM 250 WRQAPVG VLADALGLPVSVASHVDAMAGAEL+LGMRRF PSS TSLYVYARETVGYAL+ Sbjct 181 WRQAPVGQVLADALGLPVSVASHVDAMAGAELLLGMRRFLPSSPTSLYVYARETVGYALV 240 Query 251 IGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTG 310 IGGRVH P SGPGTIA LP HSE+LGGTGQLESTVSDEAV+A AR+LRI+P A R Sbjct 241 IGGRVHVPTSGPGTIATLPAHSELLGGTGQLESTVSDEAVVAVARQLRILP-FAPANRAS 299 Query 311 GSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEA 370 GSA I DLLRVARAGN+QA+ELLAER RVLG AVALLRD+LNPDE+VVGGQAFTEYPEA Sbjct 300 GSAAGIADLLRVARAGNEQARELLAERGRVLGEAVALLRDMLNPDELVVGGQAFTEYPEA 359 Query 371 MEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQ 430 MEQVEAAF A SVL PRDIR+T FGNRVQEAGAG VSLSGLYADPL A+RR+GALDARL+ Sbjct 360 MEQVEAAFAARSVLGPRDIRLTAFGNRVQEAGAGTVSLSGLYADPLSAMRRAGALDARLR 419 Query 431 DTA 433 + A Sbjct 420 EVA 422 >gi|336460433|gb|EGO39330.1| transcriptional regulator/sugar kinase [Mycobacterium avium subsp. paratuberculosis S397] Length=444 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/425 (83%), Positives = 375/425 (89%), Gaps = 1/425 (0%) Query 9 QSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATV 68 +++ PG K R ++PP+LH+ +SAAASVFRAVRLRGPVGRDVIA TSLSIATV Sbjct 15 RAVGHAPGPKPHRAVRRQIVPPALHIPESAAASVFRAVRLRGPVGRDVIANVTSLSIATV 74 Query 69 NRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFG 128 NRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFG Sbjct 75 NRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFG 134 Query 129 RTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPR 188 RTLDTVETPTPRN AG AL SLADSA RYL+RW RRR LW+GV +GG VDSATG VDHPR Sbjct 135 RTLDTVETPTPRNPAGPALASLADSARRYLRRWHRRRPLWIGVAIGGTVDSATGQVDHPR 194 Query 189 LGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYA 248 LGWRQAPVG VLADALGLPVSVASHVDAMAGAEL+LGMRRF PSS TSLYVYARETVGYA Sbjct 195 LGWRQAPVGQVLADALGLPVSVASHVDAMAGAELLLGMRRFLPSSPTSLYVYARETVGYA 254 Query 249 LMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTR 308 L+IGGRVH P SGPGTIA LP HSE+LGGTGQLESTVSDEAV+A AR+LRI+P A R Sbjct 255 LVIGGRVHVPTSGPGTIATLPAHSELLGGTGQLESTVSDEAVVAVARQLRILP-FAPANR 313 Query 309 TGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYP 368 GSA I DLLRVARAGN+QA+ELLAER RVLG AVALLRD+LNPDE+VVGGQAFTEYP Sbjct 314 ASGSAAGIADLLRVARAGNEQARELLAERGRVLGEAVALLRDMLNPDELVVGGQAFTEYP 373 Query 369 EAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDAR 428 EAMEQVEAAF A SVL PRDIR+T FGNRVQEAGAG VSLSGLYADPL A+RR+GALDAR Sbjct 374 EAMEQVEAAFAARSVLGPRDIRLTAFGNRVQEAGAGTVSLSGLYADPLSAMRRAGALDAR 433 Query 429 LQDTA 433 L++ A Sbjct 434 LREVA 438 >gi|296168087|ref|ZP_06850153.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896894|gb|EFG76522.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=436 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/409 (84%), Positives = 366/409 (90%), Gaps = 4/409 (0%) Query 25 RYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRER 84 R ++PP+LH+ DSAAASVFRAVRLRGPVGRDVIAG TSLSIATVNRQVIALLEAGLLRER Sbjct 26 RQIVPPALHIPDSAAASVFRAVRLRGPVGRDVIAGVTSLSIATVNRQVIALLEAGLLRER 85 Query 85 ADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAG 144 ADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTP ++AG Sbjct 86 ADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPLSSAG 145 Query 145 AALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADAL 204 AL SL++SA RYL+RW RRR LWVGV +GG VD ATGHVDHPRLGWRQAPVGPVL DAL Sbjct 146 PALASLSESAARYLRRWHRRRPLWVGVAIGGTVDGATGHVDHPRLGWRQAPVGPVLGDAL 205 Query 205 GLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGT 264 GLPVSVASHVDAMAGAEL+LGMRRF PSS TSLYVYARETVGYAL+IGG VHCPASGPGT Sbjct 206 GLPVSVASHVDAMAGAELLLGMRRFLPSSPTSLYVYARETVGYALVIGGGVHCPASGPGT 265 Query 265 IAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVAR 324 IA LPVHSE LGGTGQLESTVSDEAVLAAA RLRI+P R A I DLLR+AR Sbjct 266 IATLPVHSEPLGGTGQLESTVSDEAVLAAACRLRILPA----GRANAPAAGIADLLRLAR 321 Query 325 AGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVL 384 AGN+ AK+LL ER RVLG AVALLRD+LNPDE+VVGGQAFTEYPEAM++VEAAF SVL Sbjct 322 AGNEGAKDLLDERGRVLGEAVALLRDMLNPDELVVGGQAFTEYPEAMQRVEAAFAERSVL 381 Query 385 APRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQDTA 433 APRDIRVTVFGNRVQEAGAG VSL GLYADPLGA+RR+GAL+ RL+D A Sbjct 382 APRDIRVTVFGNRVQEAGAGTVSLGGLYADPLGAMRRAGALNPRLRDAA 430 >gi|183980835|ref|YP_001849126.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174161|gb|ACC39271.1| transcriptional regulatory protein [Mycobacterium marinum M] Length=411 Score = 625 bits (1613), Expect = 4e-177, Method: Compositional matrix adjust. Identities = 347/412 (85%), Positives = 370/412 (90%), Gaps = 1/412 (0%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 ++ PSLHL+DSAAASVFRAVRLRGPVGRDVIA +TSLSIATVNRQVIALL+AGLLRERAD Sbjct 1 MVAPSLHLADSAAASVFRAVRLRGPVGRDVIATTTSLSIATVNRQVIALLDAGLLRERAD 60 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAA 146 LAVSGAIGRPRVPVEVNHEPFVTLG+HIGARTTSIVATDL GRTLDTVET TPR++A +A Sbjct 61 LAVSGAIGRPRVPVEVNHEPFVTLGLHIGARTTSIVATDLLGRTLDTVETATPRSSASSA 120 Query 147 LTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGL 206 L SLADSA RYL+RW RRRALWVGV +GG VD A+GHVDH RLGWRQAPVGP LADALGL Sbjct 121 LASLADSAGRYLRRWHRRRALWVGVAIGGTVDDASGHVDHQRLGWRQAPVGPALADALGL 180 Query 207 PVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIA 266 PVSVASHVDAMAGAEL+LG RR A SSTSLYVYARETVGYAL+I GRVHCPASGPGTIA Sbjct 181 PVSVASHVDAMAGAELLLGTRRLAGGSSTSLYVYARETVGYALVIDGRVHCPASGPGTIA 240 Query 267 PLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAG 326 LP HSE+LGGTGQLESTVSDEAVLAAARRLRII + RT GS TA+TDLLRVARAG Sbjct 241 GLPAHSELLGGTGQLESTVSDEAVLAAARRLRIIAA-TPQARTNGSVTAMTDLLRVARAG 299 Query 327 NQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLAP 386 NQQA+ELLAERARVLG VALLRD+LNPDE+VVGGQAFTEYPE M QVE AFTA SVLAP Sbjct 300 NQQARELLAERARVLGETVALLRDVLNPDELVVGGQAFTEYPEGMRQVEEAFTARSVLAP 359 Query 387 RDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQDTAPEALA 438 RDIRVT FGNRVQEAGAGIVSL GLYADP GA+RRSGAL+ RL+ PEA A Sbjct 360 RDIRVTSFGNRVQEAGAGIVSLGGLYADPRGAMRRSGALNTRLRQAEPEASA 411 >gi|118619648|ref|YP_907980.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571758|gb|ABL06509.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length=411 Score = 618 bits (1593), Expect = 7e-175, Method: Compositional matrix adjust. Identities = 344/412 (84%), Positives = 368/412 (90%), Gaps = 1/412 (0%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 ++ PSLHL+DSAAASVFRAVRLRGPVGRDVIA +TSLSIATVNRQVIALL+AGLL ERAD Sbjct 1 MVAPSLHLADSAAASVFRAVRLRGPVGRDVIATTTSLSIATVNRQVIALLDAGLLWERAD 60 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAA 146 LAVSGAIGRPRVPVEVNHEPFVTLG+HIGARTTSIVATDL GRTLDTVET TPR++A +A Sbjct 61 LAVSGAIGRPRVPVEVNHEPFVTLGLHIGARTTSIVATDLLGRTLDTVETATPRSSASSA 120 Query 147 LTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGL 206 L SLADSA RYL+RW RRRALWVGV +GG VD A+GHVDH RLGWR APVGP LADALGL Sbjct 121 LASLADSAGRYLRRWHRRRALWVGVAIGGTVDDASGHVDHQRLGWRHAPVGPALADALGL 180 Query 207 PVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIA 266 PVSVASHVDAMAGAEL+LG RR A SSTSLYVYARETVGYAL+I GRVHCPASGPGTIA Sbjct 181 PVSVASHVDAMAGAELLLGTRRLAGGSSTSLYVYARETVGYALVIDGRVHCPASGPGTIA 240 Query 267 PLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAG 326 LP HSE+LGGTGQLESTVSDEAVLAAARRLRII + RT GS TA+TDLLRVARAG Sbjct 241 GLPAHSELLGGTGQLESTVSDEAVLAAARRLRIIAA-TPQARTNGSITAMTDLLRVARAG 299 Query 327 NQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLAP 386 NQQA+ELLAERARVLG VALLRD+LNPDE+VVGGQAFTEYPE M QV+ AFTA SVLAP Sbjct 300 NQQARELLAERARVLGETVALLRDVLNPDELVVGGQAFTEYPEGMRQVKEAFTARSVLAP 359 Query 387 RDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQDTAPEALA 438 RDIRVT FGNRVQEAGAGIVSL GLYADP GA+RRSGAL+ RL+ PEA A Sbjct 360 RDIRVTSFGNRVQEAGAGIVSLGGLYADPRGAMRRSGALNTRLRQAEPEASA 411 >gi|315442355|ref|YP_004075234.1| transcriptional regulator/sugar kinase [Mycobacterium sp. Spyr1] gi|315260658|gb|ADT97399.1| transcriptional regulator/sugar kinase [Mycobacterium sp. Spyr1] Length=440 Score = 558 bits (1438), Expect = 7e-157, Method: Compositional matrix adjust. Identities = 305/422 (73%), Positives = 336/422 (80%), Gaps = 8/422 (1%) Query 16 GRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIAL 75 GR Q H+ V P SL L ++AAASVF A R RGP+ RDVIA T LSIATVNRQV AL Sbjct 27 GRYPQALLHQIVAP-SLCLPEAAAASVFAAARQRGPIARDVIAQVTGLSIATVNRQVTAL 85 Query 76 LEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVE 135 L+AGLLRERADLAVSGAIGRPRVPVEVNHEPF+TLGIHIGARTTSIVA DLFGRTLD VE Sbjct 86 LDAGLLRERADLAVSGAIGRPRVPVEVNHEPFLTLGIHIGARTTSIVAADLFGRTLDVVE 145 Query 136 TPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAP 195 TPTPR A ALT +A SA RYL RW RRR LWVGV GG VDSATG++DHPRLGW AP Sbjct 146 TPTPRGAQAVALTPIAGSASRYLSRWHRRRPLWVGVATGGVVDSATGYLDHPRLGWADAP 205 Query 196 VGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRV 255 VGPVLA+ALGLPVSVASHVDAMAGAEL+LG RR ++TSLYVYARETVGYAL IGGRV Sbjct 206 VGPVLAEALGLPVSVASHVDAMAGAELLLGTRRRPGKAATSLYVYARETVGYALSIGGRV 265 Query 256 HCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATA 315 H P SGPGTIA LPV SE+LGGTGQLESTVSDEA+L AARR I+P G A+ Sbjct 266 HSPTSGPGTIASLPVRSELLGGTGQLESTVSDEALLTAARRAGIVP-------AEGPAST 318 Query 316 ITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVE 375 +T +LR AR GN+ A L+AERARVLG AVALLRD+LNPD++VVGGQAFTEYPE M VE Sbjct 319 LTAVLRAARKGNEHAVALIAERARVLGEAVALLRDMLNPDDLVVGGQAFTEYPEGMSIVE 378 Query 376 AAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQDTAPE 435 AF S L RDIR+T FGNRVQEAGAGIVSL GLYADP+ A+RR+ A + RL +P Sbjct 379 EAFNERSALGHRDIRLTAFGNRVQEAGAGIVSLGGLYADPIAAMRRALARNERLGSASPA 438 Query 436 AL 437 A+ Sbjct 439 AV 440 >gi|169631138|ref|YP_001704787.1| hypothetical protein MAB_4059c [Mycobacterium abscessus ATCC 19977] gi|169243105|emb|CAM64133.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=412 Score = 556 bits (1433), Expect = 2e-156, Method: Compositional matrix adjust. Identities = 295/412 (72%), Positives = 333/412 (81%), Gaps = 14/412 (3%) Query 13 RKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQV 72 R+P +HQ + PP+L++ DSAA+SVFRA R+RGPV RD IA T LSIATVNRQV Sbjct 6 RRPVSRHQ------IHPPALYIGDSAASSVFRAARVRGPVARDAIAQVTGLSIATVNRQV 59 Query 73 IALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLD 132 ALL+AGLLRERADLAVSGAIGRPRVPVE+NHEPF+TLGIHIGAR TSIVATDLFGRTLD Sbjct 60 TALLDAGLLRERADLAVSGAIGRPRVPVELNHEPFLTLGIHIGARATSIVATDLFGRTLD 119 Query 133 TVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWR 192 VETPTP GAAL SLA SA RYL RW RRR LWVGV GG VD G VDHPRLGW Sbjct 120 VVETPTPNGPQGAALASLAGSAQRYLARWHRRRPLWVGVATGGVVDGPAGTVDHPRLGWT 179 Query 193 QAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIG 252 +APVG V AD LGLPVSVASHVDAMAGAEL+LG+RRFA S TSLYVYARETVG+AL I Sbjct 180 EAPVGRVFADTLGLPVSVASHVDAMAGAELLLGLRRFAARSLTSLYVYARETVGFALAID 239 Query 253 GRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGS 312 GRVH P+SGPGTIA LPV SE+LGG+G+LE+TVSDEAVLAAAR+LRI+P G Sbjct 240 GRVHSPSSGPGTIAALPVDSELLGGSGKLETTVSDEAVLAAARKLRIVP--------AGD 291 Query 313 ATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAME 372 +++ + + AR GN+ A+ELL+ER RVLG +VALLRD+LNPDEV+VGGQAFTEYPE M Sbjct 292 GVSVSAVYKAARGGNESARELLSERGRVLGQSVALLRDILNPDEVIVGGQAFTEYPEVMN 351 Query 373 QVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGA 424 VE AF S L+ RDIRVT FGNRVQEAGAG+VSL GL+ADPLGA+RR+ A Sbjct 352 DVETAFLDRSTLSKRDIRVTAFGNRVQEAGAGVVSLGGLFADPLGAMRRASA 403 >gi|145220693|ref|YP_001131371.1| ROK family protein [Mycobacterium gilvum PYR-GCK] gi|145213179|gb|ABP42583.1| ROK family protein [Mycobacterium gilvum PYR-GCK] Length=440 Score = 553 bits (1426), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 303/437 (70%), Positives = 341/437 (79%), Gaps = 11/437 (2%) Query 4 TNRTSQSLSRKP---GRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 T + +++P GR Q H+ V P SL L ++AAASVF A R RGP+ RDVIA Sbjct 12 TTSAENAAAKRPAAGGRYPQALLHQIVAP-SLCLPEAAAASVFAAARQRGPIARDVIAQV 70 Query 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 T LSIATVNRQV ALL+AGLLRERADLAVSGAIGRPRVPVEVNHEPF+TLGIHIGARTTS Sbjct 71 TGLSIATVNRQVTALLDAGLLRERADLAVSGAIGRPRVPVEVNHEPFLTLGIHIGARTTS 130 Query 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 IVA DLFGRTLD VETPTPR ALT++A SA RYL RW RRR LWVGV GG VDSA Sbjct 131 IVAADLFGRTLDVVETPTPRGPQAVALTAIAGSASRYLSRWHRRRPLWVGVATGGVVDSA 190 Query 181 TGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVY 240 TG++DHPRLGW APVGPVLA+ LGLPVSVASHVDAMAGAEL+LG+RR ++T LYVY Sbjct 191 TGYLDHPRLGWADAPVGPVLAETLGLPVSVASHVDAMAGAELLLGVRRRPGKAATGLYVY 250 Query 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRII 300 ARETVGYAL IGGRVH P SGPGTIA LPV SE+LGGTGQLESTVSDEAVL AARR ++ Sbjct 251 ARETVGYALSIGGRVHSPTSGPGTIASLPVRSELLGGTGQLESTVSDEAVLTAARRAGVV 310 Query 301 PGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVG 360 P G A+ +T +LR AR G++ A L+AERARVLG AVALLRD+LNPD++VVG Sbjct 311 P-------ADGPASTVTAVLRAARQGDEHAVALIAERARVLGEAVALLRDMLNPDDLVVG 363 Query 361 GQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALR 420 GQAFTEYPE M VE AF S L RDIR+T FGNRVQEAGAGIVSL GLYADP+ A+R Sbjct 364 GQAFTEYPEGMSIVEEAFNERSALGHRDIRLTAFGNRVQEAGAGIVSLGGLYADPIAAMR 423 Query 421 RSGALDARLQDTAPEAL 437 R+ A + RL +P A+ Sbjct 424 RALARNERLGSASPAAV 440 >gi|118469375|ref|YP_885335.1| ROK family protein [Mycobacterium smegmatis str. MC2 155] gi|118170662|gb|ABK71558.1| ROK family protein [Mycobacterium smegmatis str. MC2 155] Length=399 Score = 550 bits (1416), Expect = 2e-154, Method: Compositional matrix adjust. Identities = 296/393 (76%), Positives = 326/393 (83%), Gaps = 10/393 (2%) Query 28 MPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADL 87 M PSL + D+AAASVF AVRLRGP+ RDVIA TSLSIATVNRQV ALLEAG+LRERADL Sbjct 1 MAPSLKVPDAAAASVFNAVRLRGPIARDVIAQHTSLSIATVNRQVTALLEAGVLRERADL 60 Query 88 AVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAAL 147 AVSGAIGRPRVPVEVNHEP++TLG+HIGA+TT+IVATDL GRTLD VETPTP AAL Sbjct 61 AVSGAIGRPRVPVEVNHEPYLTLGVHIGAKTTAIVATDLLGRTLDVVETPTPTGTQAAAL 120 Query 148 TSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLP 207 +LA SA RYL RW RRR LWVGV GG VDSATG++DHPRLGW APVGPVLA+ALGLP Sbjct 121 ATLASSARRYLSRWHRRRPLWVGVAAGGVVDSATGYLDHPRLGWADAPVGPVLAEALGLP 180 Query 208 VSVASHVDAMAGAELMLGMRRFAP---SSSTSLYVYARETVGYALMIGGRVHCPASGPGT 264 VS+ASHVDAMAGAEL+L RR +S TSLYVYARETVGYAL I GRVH PASGPGT Sbjct 181 VSMASHVDAMAGAELLLSGRRAENAGGASRTSLYVYARETVGYALSIDGRVHSPASGPGT 240 Query 265 IAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVAR 324 IA LP SE+LGGTGQLESTVSDEAVL AARRLRI+P G A+ + +LR AR Sbjct 241 IAGLPARSELLGGTGQLESTVSDEAVLNAARRLRIVP-------AEGPASTLPAVLRAAR 293 Query 325 AGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVL 384 GN++A ELLA+RARVLG AVALLRD+LNPDE+VVGGQAFTEYPE ME VEAAF S+L Sbjct 294 GGNEKAVELLADRARVLGEAVALLRDMLNPDELVVGGQAFTEYPEGMEAVEAAFAERSML 353 Query 385 APRDIRVTVFGNRVQEAGAGIVSLSGLYADPLG 417 PRDIR+T FGNRVQEAGAG+VSL GLYADP+G Sbjct 354 GPRDIRLTAFGNRVQEAGAGVVSLGGLYADPIG 386 >gi|289744184|ref|ZP_06503562.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289684712|gb|EFD52200.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] Length=276 Score = 548 bits (1411), Expect = 1e-153, Method: Compositional matrix adjust. Identities = 275/276 (99%), Positives = 276/276 (100%), Gaps = 0/276 (0%) Query 98 VPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRY 157 +PVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRY Sbjct 1 MPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRY 60 Query 158 LQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAM 217 LQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAM Sbjct 61 LQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAM 120 Query 218 AGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGG 277 AGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGG Sbjct 121 AGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGG 180 Query 278 TGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQAKELLAER 337 TGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQAKELLAER Sbjct 181 TGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQAKELLAER 240 Query 338 ARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQ 373 ARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQ Sbjct 241 ARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQ 276 >gi|108797636|ref|YP_637833.1| ROK domain-containing protein [Mycobacterium sp. MCS] gi|119866723|ref|YP_936675.1| ROK family protein [Mycobacterium sp. KMS] gi|126433260|ref|YP_001068951.1| ROK family protein [Mycobacterium sp. JLS] gi|108768055|gb|ABG06777.1| ROK domain containing protein [Mycobacterium sp. MCS] gi|119692812|gb|ABL89885.1| ROK family protein [Mycobacterium sp. KMS] gi|126233060|gb|ABN96460.1| ROK family protein [Mycobacterium sp. JLS] Length=436 Score = 536 bits (1382), Expect = 2e-150, Method: Compositional matrix adjust. Identities = 297/407 (73%), Positives = 332/407 (82%), Gaps = 10/407 (2%) Query 20 QLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAG 79 ++ R+V+ P+L ++D+AA+SVF A R+RGP+ RD IA T LSIATVNRQV ALL+A Sbjct 31 RITHQRHVVAPALKVADAAASSVFAAARMRGPIARDAIARVTGLSIATVNRQVSALLDAA 90 Query 80 LLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTP 139 +LRERADLAVSGAIGRPRVPVEVNHEPF+TLGIHIGA+TTSIVATDLFGRTLD VETPTP Sbjct 91 ILRERADLAVSGAIGRPRVPVEVNHEPFLTLGIHIGAKTTSIVATDLFGRTLDVVETPTP 150 Query 140 RNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPV 199 R AAL L+ SA +YL RW RRRALWVGV GG VD TGH+DHPRLGW APVGPV Sbjct 151 RGPQDAALAVLSASARKYLSRWHRRRALWVGVAAGGVVDGVTGHLDHPRLGWSHAPVGPV 210 Query 200 LADALGLPVSVASHVDAMAGAELMLGMRR--FAPSSSTSLYVYARETVGYALMIGGRVHC 257 LA++LGLPVSVASHVDAMAGAEL+LG RR AP SSTSLYVYARETVG+AL I GRVH Sbjct 211 LAESLGLPVSVASHVDAMAGAELLLGARRPTVAP-SSTSLYVYARETVGFALSIDGRVHS 269 Query 258 PASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAIT 317 P SGPGTIA LP SE+LGG+GQLESTVSDEAVL AARR RII G + + Sbjct 270 PTSGPGTIAALPAQSELLGGSGQLESTVSDEAVLTAARRQRIIAA-------DGPTSTMA 322 Query 318 DLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAA 377 +LR AR GN A+ LLAERARVLG AVALLRD+LNPD++VVGGQAFTEYPEAM VEAA Sbjct 323 AVLRAARQGNDAAQALLAERARVLGEAVALLRDMLNPDDLVVGGQAFTEYPEAMPLVEAA 382 Query 378 FTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGA 424 FTA SVL RDIR+T FGNRVQEAGAG+VSL GLYADP+ A+RRSGA Sbjct 383 FTARSVLPGRDIRLTTFGNRVQEAGAGVVSLGGLYADPIAAMRRSGA 429 >gi|333989114|ref|YP_004521728.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333485082|gb|AEF34474.1| transcriptional regulatory protein [Mycobacterium sp. JDM601] Length=404 Score = 519 bits (1337), Expect = 4e-145, Method: Compositional matrix adjust. Identities = 292/393 (75%), Positives = 325/393 (83%), Gaps = 5/393 (1%) Query 30 PSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAV 89 PSLHL D+A A+VF AVR GP+ R+ IAG+TSLS+ATVNRQV ALLEAGLL ERADLA Sbjct 4 PSLHLPDTAGAAVFAAVRQGGPIAREAIAGATSLSVATVNRQVSALLEAGLLLERADLAT 63 Query 90 SGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTS 149 SGAIGRPR PV VNHEPF+ LG+HIGA+TTSIVATDL GRTLD VE PTP N A AL S Sbjct 64 SGAIGRPRRPVVVNHEPFLALGLHIGAKTTSIVATDLLGRTLDVVEIPTPANGAAPALAS 123 Query 150 LADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVS 209 LA SA RYL RW +RR LWVGV GGAVD ATG+VDHPRLGW APVGPVLA+ L LPVS Sbjct 124 LAASARRYLTRWGKRRPLWVGVATGGAVDRATGYVDHPRLGWTAAPVGPVLAEELRLPVS 183 Query 210 VASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIAPLP 269 VASHVDAMAGAEL+LG+RR SSTSLYVYARETVGYAL+IGGRVH PASGPGTIA LP Sbjct 184 VASHVDAMAGAELLLGVRRPVADSSTSLYVYARETVGYALVIGGRVHSPASGPGTIAGLP 243 Query 270 VHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQ 329 V SE+LGG+GQLESTVSDEAVLAAARRLRI+PG TG ++ A+T L+R ARAG+++ Sbjct 244 VSSELLGGSGQLESTVSDEAVLAAARRLRILPG-----GTGAASAAVTGLVREARAGDER 298 Query 330 AKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLAPRDI 389 A LL ERAR LG AVALLRD+LNPD++VVGGQ FTEYPE + +VE A SVL+ R I Sbjct 299 ATALLTERARALGEAVALLRDVLNPDDLVVGGQGFTEYPEGIAEVERAVAERSVLSGRTI 358 Query 390 RVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS 422 RVT FGNRVQEAGAG VSL GLYADP+GA+RRS Sbjct 359 RVTAFGNRVQEAGAGTVSLGGLYADPVGAMRRS 391 >gi|298523963|ref|ZP_07011372.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|298493757|gb|EFI29051.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] Length=265 Score = 503 bits (1296), Expect = 2e-140, Method: Compositional matrix adjust. Identities = 256/256 (100%), Positives = 256/256 (100%), Gaps = 0/256 (0%) Query 183 HVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYAR 242 HVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYAR Sbjct 10 HVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYAR 69 Query 243 ETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPG 302 ETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPG Sbjct 70 ETVGYALMIGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPG 129 Query 303 IASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQ 362 IASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQ Sbjct 130 IASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQ 189 Query 363 AFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS 422 AFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS Sbjct 190 AFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS 249 Query 423 GALDARLQDTAPEALA 438 GALDARLQDTAPEALA Sbjct 250 GALDARLQDTAPEALA 265 >gi|120401841|ref|YP_951670.1| ROK family protein [Mycobacterium vanbaalenii PYR-1] gi|119954659|gb|ABM11664.1| ROK family protein [Mycobacterium vanbaalenii PYR-1] Length=437 Score = 476 bits (1225), Expect = 3e-132, Method: Compositional matrix adjust. Identities = 285/412 (70%), Positives = 320/412 (78%), Gaps = 17/412 (4%) Query 19 HQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEA 78 H L H ++ P+L + ++AAA+V A R RGP+ RDVIA T LSIATVNRQV ALLE Sbjct 28 HALLHH--IVAPALRVPEAAAAAVLAAARQRGPIARDVIAQVTGLSIATVNRQVTALLEV 85 Query 79 GLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPT 138 GLLRERADLAVSGAIGRPRVPVEVNH PF+TLGIHIGARTTSIVATDL GRTLD VET T Sbjct 86 GLLRERADLAVSGAIGRPRVPVEVNHGPFLTLGIHIGARTTSIVATDLLGRTLDVVETAT 145 Query 139 PRNAAGAALTSLADSADRYLQRWRRRRA--------LWVGVTLGGAVDSATGHVDHPRLG 190 PR AAL ++A SA RYL R R LWVGV GG VDSATG+V+HPRLG Sbjct 146 PRGPQAAALAAVAGSARRYLSRPPRAGGAPRRRRRPLWVGVATGGVVDSATGYVNHPRLG 205 Query 191 WRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALM 250 W APVG VL +ALGLPVS+ASHVDAMAGAEL+LG+RR S+TSLYVYARETVGYAL Sbjct 206 WSDAPVGTVLGEALGLPVSLASHVDAMAGAELLLGVRRQPAKSTTSLYVYARETVGYALS 265 Query 251 IGGRVHCPASGPGTIAPLPVHSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTG 310 IGG+VH P+SGPGTIA LP SE+LGGTGQLESTVSDEAVL AAR+ I+ Sbjct 266 IGGQVHSPSSGPGTIAALPAFSELLGGTGQLESTVSDEAVLTAARKAGIVA-------AE 318 Query 311 GSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEA 370 G + +T +LR AR GN A L+AERARVLG AVALLRD+LNPD++VVGGQAFTEYPE Sbjct 319 GPTSTVTAVLRAARQGNAAAAALVAERARVLGEAVALLRDMLNPDDLVVGGQAFTEYPEG 378 Query 371 MEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS 422 M VE+AF A SVL RDIRVT FGNR+QEAGAGIVSL GLYADP+GA+RR+ Sbjct 379 MPLVESAFAARSVLPHRDIRVTAFGNRIQEAGAGIVSLGGLYADPIGAMRRA 430 >gi|226361167|ref|YP_002778945.1| NagC family transcriptional regulator [Rhodococcus opacus B4] gi|226239652|dbj|BAH50000.1| putative NagC family transcriptional regulator [Rhodococcus opacus B4] Length=403 Score = 414 bits (1064), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 223/406 (55%), Positives = 276/406 (68%), Gaps = 12/406 (2%) Query 22 RSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLL 81 R +++PP L +SD AA V R R RGP+ RDV A +T LSIATVNRQV ALL+ GLL Sbjct 3 RPRLHIVPPELRISDGPAAGVLRVARSRGPLSRDVAAKATGLSIATVNRQVSALLDLGLL 62 Query 82 RERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRN 141 RER DL SGAIGRPRVP EVNHEP++T+GIHIGA TSI+A+DL G+ L VE PTP+ Sbjct 63 RERGDLTPSGAIGRPRVPFEVNHEPYLTVGIHIGAVVTSIIASDLRGKVLGAVEVPTPQG 122 Query 142 AAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLA 201 A+ ALT +A SA + RW RRR LW GV LGG VD+ TG VDHPRLGW+ A VG ++A Sbjct 123 ASADALTGIARSARAFASRWHRRRPLWAGVALGGRVDAQTGVVDHPRLGWKSAQVGAIIA 182 Query 202 DALGLPVSVASHVDAMAGAELML--GMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPA 259 LGLPVSVA+HV+AMA +EL+L T LY YARET G A+ I GRVH P+ Sbjct 183 TGLGLPVSVAAHVEAMAASELLLTPDSEEGVAQGETGLYFYARETAGIAITIDGRVHTPS 242 Query 260 SGPGTIAPLPVHSEM---LGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAI 316 SGPG+IA LP S G G LE+T+SD AV++AA I+P R + Sbjct 243 SGPGSIAHLPTGSSAQCSCGSRGCLEATISDRAVISAALAAGILPESNQR-------PTM 295 Query 317 TDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEA 376 + L + A + + A E+L ERA+VLG VA+LRDL NPD V++GGQAFTEYP + V Sbjct 296 SALYKAASSDSAPAHEILVERAQVLGKTVAMLRDLFNPDRVILGGQAFTEYPAGIPHVAE 355 Query 377 AFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS 422 AF S L RDIR++ FGNRVQE + +VSLS +Y+DP+GA+RR+ Sbjct 356 AFAQASSLERRDIRISGFGNRVQEYASTVVSLSAIYSDPVGAMRRT 401 >gi|111019074|ref|YP_702046.1| ROK family transcriptional regulator [Rhodococcus jostii RHA1] gi|110818604|gb|ABG93888.1| possible transcriptional regulator, ROK family protein [Rhodococcus jostii RHA1] Length=424 Score = 410 bits (1055), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 225/411 (55%), Positives = 277/411 (68%), Gaps = 22/411 (5%) Query 22 RSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLL 81 R +++PP L +SD AA V R R RGP+ RDV A +T LSIATVNRQV ALL+ GLL Sbjct 24 RPRLHIVPPELRISDGPAAGVLRVARSRGPLSRDVAAKATGLSIATVNRQVSALLDLGLL 83 Query 82 RERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRN 141 RER DL SGAIGRPRVP EVNHEP++T+GIHIGA TSI+A+DL G+ L VE PTP+ Sbjct 84 RERGDLTPSGAIGRPRVPFEVNHEPYLTVGIHIGAVVTSIIASDLRGKVLGAVEVPTPQG 143 Query 142 AAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLA 201 A+ AL +A SA + RW RRR LW GV LGG VD TG VDHPRLGW+ A VG ++A Sbjct 144 ASADALAGIARSARAFASRWHRRRPLWAGVALGGRVDPQTGVVDHPRLGWKSAQVGAIIA 203 Query 202 DALGLPVSVASHVDAMAGAELMLGMRRFAPSS-------STSLYVYARETVGYALMIGGR 254 LGLPVSVA+HV+AMA +EL+L +P S T LY YARET G A+ I GR Sbjct 204 TGLGLPVSVAAHVEAMAASELLL-----SPDSEDGVAQGETGLYFYARETAGIAITIDGR 258 Query 255 VHCPASGPGTIAPLPVHSEM---LGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGG 311 VH P+SGPG+IA LP S G G LE+T+SD AV++AA I+ R Sbjct 259 VHTPSSGPGSIAHLPTGSSAQCSCGSRGCLEATISDRAVISAALDAGILAESNQR----- 313 Query 312 SATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAM 371 ++ L + A +G+ A ELL ERA+VLG VA+LRDL NPD V++GGQAFTEYP + Sbjct 314 --PTMSALYKAASSGSVPAHELLVERAQVLGKTVAMLRDLFNPDRVILGGQAFTEYPAGI 371 Query 372 EQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS 422 V AF S L RDIR++ FGNRVQE + +VSLS +Y+DP+GA+RR+ Sbjct 372 PHVAEAFAQASSLERRDIRISGFGNRVQEYASTVVSLSTIYSDPVGAMRRT 422 >gi|229490556|ref|ZP_04384394.1| ROK family protein [Rhodococcus erythropolis SK121] gi|229322376|gb|EEN88159.1| ROK family protein [Rhodococcus erythropolis SK121] Length=434 Score = 400 bits (1029), Expect = 2e-109, Method: Compositional matrix adjust. Identities = 218/410 (54%), Positives = 279/410 (69%), Gaps = 14/410 (3%) Query 22 RSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLL 81 R+ ++ P L ++D +A+V R R RGP+ RD A ++ LSIATVNRQV +LL+ G+L Sbjct 33 RTRTQIVAPELRIADGPSATVLRIARSRGPLSRDTAAKASGLSIATVNRQVTSLLDLGIL 92 Query 82 RERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRN 141 RERADL SGAIGRPRVP EVNHEP++T+GIHIGA TSI+A+D+ G+ L VE PTP Sbjct 93 RERADLTASGAIGRPRVPFEVNHEPYLTVGIHIGAVVTSIIASDIRGKVLGAVEIPTPAT 152 Query 142 AAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLA 201 + AL ++A SA + RW +RR L VGV +GG VDSATG VDHPRLGW+ A VG ++ Sbjct 153 NSAVALATIARSAKSFASRWHKRRPLAVGVAIGGRVDSATGVVDHPRLGWKGAKVGSIIG 212 Query 202 DALGLPVSVASHVDAMAGAELMLGMRRF-APS-SSTSLYVYARETVGYALMIGGRVHCPA 259 L LPVSVA+HV+AMA +EL+L R AP+ +T LY YARET G A+ GRVH P+ Sbjct 213 AGLDLPVSVAAHVEAMAASELLLSTDRAEAPTPGTTGLYFYARETAGIAITFEGRVHTPS 272 Query 260 SGPGTIAPLPVHSE---MLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSA-TA 315 SGPG+IA LP S G G LE+T+SD AV+A A ++S GS Sbjct 273 SGPGSIAHLPTGSSARCTCGAVGCLEATISDRAVVAQA--------LSSGAVIQGSERVT 324 Query 316 ITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVE 375 I D+ R A +G+ A ELL +RARVLG VA+LRDL NPD V++GGQAFT+YP + V Sbjct 325 IADVYRAASSGSIPAHELLVDRARVLGRTVAMLRDLFNPDRVILGGQAFTDYPAGVPHVA 384 Query 376 AAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGAL 425 AF+ S L +DIR+T FGNRVQE + +VSLS L+ADP A+RR+ A+ Sbjct 385 EAFSTASSLERKDIRITGFGNRVQEYASTVVSLSSLFADPAAAMRRASAV 434 >gi|226305098|ref|YP_002765056.1| NagC family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226184213|dbj|BAH32317.1| putative NagC family transcriptional regulator [Rhodococcus erythropolis PR4] Length=423 Score = 400 bits (1027), Expect = 3e-109, Method: Compositional matrix adjust. Identities = 218/410 (54%), Positives = 279/410 (69%), Gaps = 14/410 (3%) Query 22 RSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLL 81 R+ ++ P L ++D +A+V R R RGP+ RD A ++ LSIATVNRQV +LL+ G+L Sbjct 22 RTRTQIVVPELRIADGPSATVLRIARSRGPLSRDTAAKASGLSIATVNRQVTSLLDLGIL 81 Query 82 RERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRN 141 RERADL SGAIGRPRVP EVNHEP++T+GIHIGA TSI+A+D+ G+ L VE PTP Sbjct 82 RERADLTASGAIGRPRVPFEVNHEPYLTVGIHIGAVVTSIIASDIRGKVLGAVEIPTPAT 141 Query 142 AAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLA 201 + AL ++A SA + RW +RR L VGV +GG VDSATG VDHPRLGW+ A VG ++ Sbjct 142 NSAVALATIARSAKSFASRWHKRRPLAVGVAIGGRVDSATGVVDHPRLGWKGAKVGSIIG 201 Query 202 DALGLPVSVASHVDAMAGAELMLGMRRF-APS-SSTSLYVYARETVGYALMIGGRVHCPA 259 L LPVSVA+HV+AMA +EL+L R AP+ +T LY YARET G A+ GRVH P+ Sbjct 202 AGLDLPVSVAAHVEAMAASELLLSTDRAEAPTPGTTGLYFYARETAGIAITFEGRVHTPS 261 Query 260 SGPGTIAPLPVHSE---MLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSA-TA 315 SGPG+IA LP S G G LE+T+SD AV+A A ++S GS Sbjct 262 SGPGSIAHLPTGSSARCTCGAVGCLEATISDRAVVAQA--------LSSGAVIQGSERVT 313 Query 316 ITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVE 375 I D+ R A +G+ A ELL +RARVLG VA+LRDL NPD V++GGQAFT+YP + V Sbjct 314 IADVYRAASSGSIPAHELLVDRARVLGRTVAMLRDLFNPDRVILGGQAFTDYPAGVPHVA 373 Query 376 AAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGAL 425 AF+ S L +DIR+T FGNRVQE + +VSLS L+ADP A+RR+ A+ Sbjct 374 EAFSTASSLERKDIRITGFGNRVQEYASTVVSLSSLFADPAAAMRRASAV 423 >gi|289748975|ref|ZP_06508353.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] gi|289689562|gb|EFD56991.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] Length=192 Score = 377 bits (968), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 189/192 (99%), Positives = 190/192 (99%), Gaps = 0/192 (0%) Query 1 VYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 +YSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS Sbjct 1 MYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 Query 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS Sbjct 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 Query 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSA 180 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTL GAVD A Sbjct 121 IVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLDGAVDRA 180 Query 181 TGHVDHPRLGWR 192 TGHVDHPRLGWR Sbjct 181 TGHVDHPRLGWR 192 >gi|54022245|ref|YP_116487.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54013753|dbj|BAD55123.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=421 Score = 374 bits (961), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 216/407 (54%), Positives = 272/407 (67%), Gaps = 11/407 (2%) Query 20 QLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAG 79 ++R+ R V+PP L +SD+ AA+V RA GPV RD A +T LSIATVNRQV ALL AG Sbjct 17 RVRTPRPVLPPELRISDNPAAAVLRAA-TGGPVSRDNAARTTGLSIATVNRQVSALLAAG 75 Query 80 LLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTP 139 LLRER DL GA+GRPRVP EV+H+ ++TLGIHIGA T IVA DL GR + + TP Sbjct 76 LLRERPDLTTPGAVGRPRVPFEVDHDSYLTLGIHIGAAATKIVAADLRGRIIGGLAIATP 135 Query 140 RNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPV 199 + A T++A SA +L+RW RRRALW GV +GG VD +G VDHP LGW+ A +G V Sbjct 136 QTGQDFATTTIARSAKAFLRRWHRRRALWAGVAIGGRVDPVSGSVDHPALGWQGAQLGAV 195 Query 200 LADALGLPVSVASHVDAMAGAELMLGMRR--FAPSSSTSLYVYARETVGYALMIGGRVHC 257 LA+ L LP+SVA HV+AMA +EL+L + A L+ Y RET G A+ + GRVH Sbjct 196 LAEVLELPISVAPHVEAMAASELLLPTPQPDRAHERGAGLFFYVRETAGVAVTLDGRVHT 255 Query 258 PASGPGTIAPLPVHSEML---GGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSAT 314 P++GPG+IA LP S+++ G TG LE+TV D A++A A IIP + TGGS Sbjct 256 PSNGPGSIAHLPTGSDVVCACGRTGCLEATVGDRALVARAVGRGIIP---AHNGTGGS-- 310 Query 315 AITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQV 374 I DL R A G+ A ELL ERA +LG AVAL+ D+LNPD V++GGQAFT Y + V Sbjct 311 TIADLHRAAAEGSTAAHELLVERATILGNAVALVSDMLNPDRVILGGQAFTGYRPGVAHV 370 Query 375 EAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRR 421 AF + S L P DIR++ FG +VQE A + SLS LYADPL A+RR Sbjct 371 AKAFRSASALPPTDIRISGFGGKVQEFAAVVASLSALYADPLAAMRR 417 >gi|325674057|ref|ZP_08153747.1| ROK family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555322|gb|EGD24994.1| ROK family transcriptional regulator [Rhodococcus equi ATCC 33707] Length=433 Score = 362 bits (928), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 212/425 (50%), Positives = 283/425 (67%), Gaps = 18/425 (4%) Query 3 STNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTS 62 +++RT +S +P + + ++PP+L ++D AA+VFR GP+ RD +T Sbjct 18 TSSRTVRSTPPRPATRSR------IVPPTLGIADGPAAAVFRVAAAGGPISRDEATRATG 71 Query 63 LSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIV 122 SIATVNR V A++ AGLLRER DL +GA+GRPRVP EV+HE +T+GIHIGA TS++ Sbjct 72 SSIATVNRHVSAMIAAGLLRERPDLVAAGAVGRPRVPFEVDHESHLTVGIHIGAVVTSVI 131 Query 123 ATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATG 182 DL GR L +E PTPR A+ AAL ++ SA + RW RRR LWVGV +GG V+ TG Sbjct 132 TADLRGRILGAIEIPTPRGASDAALATITASARGFAARWHRRRPLWVGVAIGGRVEPETG 191 Query 183 HVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRR--FAPSSSTSLYVY 240 V+HPRLGW A VG ++ GLPVSVA+HV+AMA +EL+L +R A + LY Y Sbjct 192 LVEHPRLGWSGARVGDIVGAGFGLPVSVAAHVEAMAASELLLTPQRADNADARGGGLYFY 251 Query 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEM---LGGTGQLESTVSDEAVLAAARRL 297 ARETVG AL + G+VH P +GPG+IA LP S+ G TG LE+ VSD VL AARR Sbjct 252 ARETVGLALTLDGKVHTPTAGPGSIAHLPTASDAPCDCGATGCLEAAVSDRGVLLAARRA 311 Query 298 RIIPGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEV 357 ++ G + + R AR+G+ A+++L ERA+VLG AVA++RDL NPD V Sbjct 312 GVL-------AADGPLPPVATVYRAARSGSAAAQQILTERAQVLGRAVAMVRDLFNPDRV 364 Query 358 VVGGQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLG 417 ++GGQAFT+YPEA QV A + S +A D+R+T FGNRVQE AG+VSLS LY++PL Sbjct 365 ILGGQAFTDYPEAAPQVARALSEASRVAGADVRITGFGNRVQEHAAGVVSLSSLYSNPLA 424 Query 418 ALRRS 422 A+R++ Sbjct 425 AMRKA 429 >gi|312141123|ref|YP_004008459.1| rok family protein [Rhodococcus equi 103S] gi|311890462|emb|CBH49780.1| putative secreted ROK family protein [Rhodococcus equi 103S] Length=421 Score = 362 bits (928), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 212/425 (50%), Positives = 283/425 (67%), Gaps = 18/425 (4%) Query 3 STNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTS 62 +++RT +S +P + + ++PP+L ++D AA+VFR GP+ RD +T Sbjct 6 TSSRTVRSTPPRPATRSR------IVPPTLGIADGPAAAVFRVAAAGGPISRDEATRATG 59 Query 63 LSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIV 122 SIATVNR V A++ AGLLRER DL +GA+GRPRVP EV+HE +T+GIHIGA TS++ Sbjct 60 SSIATVNRHVSAMIAAGLLRERPDLVAAGAVGRPRVPFEVDHESHLTVGIHIGAVVTSVI 119 Query 123 ATDLFGRTLDTVETPTPRNAAGAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATG 182 DL GR L +E PTPR A+ AAL ++ SA + RW RRR LWVGV +GG V+ TG Sbjct 120 TADLRGRILGAIEIPTPRGASDAALATITASARGFAARWHRRRPLWVGVAIGGRVEPETG 179 Query 183 HVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRR--FAPSSSTSLYVY 240 V+HPRLGW A VG ++ GLPVSVA+HV+AMA +EL+L +R A + LY Y Sbjct 180 LVEHPRLGWSGARVGDIVGAGFGLPVSVAAHVEAMAASELLLTPQRADNADARGGGLYFY 239 Query 241 ARETVGYALMIGGRVHCPASGPGTIAPLPVHSEM---LGGTGQLESTVSDEAVLAAARRL 297 ARETVG AL + G+VH P +GPG+IA LP S+ G TG LE+ VSD VL AARR Sbjct 240 ARETVGLALTLDGKVHTPTAGPGSIAHLPTASDAPCDCGATGCLEAAVSDRGVLLAARRA 299 Query 298 RIIPGIASRTRTGGSATAITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEV 357 ++ G + + R AR+G+ A+++L ERA+VLG AVA++RDL NPD V Sbjct 300 GVL-------AADGPLPPVATVYRAARSGSAAAQQILTERAQVLGRAVAMVRDLFNPDRV 352 Query 358 VVGGQAFTEYPEAMEQVEAAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLG 417 ++GGQAFT+YPEA QV A + S +A D+R+T FGNRVQE AG+VSLS LY++PL Sbjct 353 ILGGQAFTDYPEAAPQVARALSEASRVAGADVRITGFGNRVQEHAAGVVSLSSLYSNPLA 412 Query 418 ALRRS 422 A+R++ Sbjct 413 AMRKA 417 >gi|254822046|ref|ZP_05227047.1| ROK family protein [Mycobacterium intracellulare ATCC 13950] Length=227 Score = 355 bits (911), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 181/220 (83%), Positives = 195/220 (89%), Gaps = 1/220 (0%) Query 212 SHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIAPLPVH 271 SHVDAMAGAEL+LGMRRF PSS TSLYVYARETVGYAL+IGGRVHCP+SGPGTIA LP Sbjct 1 SHVDAMAGAELLLGMRRFLPSSPTSLYVYARETVGYALVIGGRVHCPSSGPGTIASLPAQ 60 Query 272 SEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQAK 331 SE+LGGTGQLESTVSDEAV+A AR+ RI+P A R G AT I DLLRVARAGNQQAK Sbjct 61 SELLGGTGQLESTVSDEAVVAVARQQRILP-FAPANRANGPATGIADLLRVARAGNQQAK 119 Query 332 ELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLAPRDIRV 391 +LLAER RVLG AVALLRD+LNPDE+VVGGQAFTEYPEAMEQVEAAF A SVL PRDIR+ Sbjct 120 DLLAERGRVLGEAVALLRDMLNPDELVVGGQAFTEYPEAMEQVEAAFAARSVLGPRDIRL 179 Query 392 TVFGNRVQEAGAGIVSLSGLYADPLGALRRSGALDARLQD 431 T FGNRVQEAGAG VSLSGLYADPLGA+RR+GALDARL + Sbjct 180 TAFGNRVQEAGAGTVSLSGLYADPLGAMRRAGALDARLHE 219 >gi|333921555|ref|YP_004495136.1| putative ROK family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333483776|gb|AEF42336.1| Possible transcriptional regulator, ROK family protein [Amycolicicoccus subflavus DQS3-9A1] Length=420 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 203/402 (51%), Positives = 259/402 (65%), Gaps = 17/402 (4%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 V P S+S A++ R GP+ R+ A T SIATVNR V ALL AGLLRERAD Sbjct 18 VASPRFERSESPPAAILRVAVQEGPLARERAAQLTGSSIATVNRHVSALLSAGLLRERAD 77 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAA 146 L+ SGA+GRPRVP E NHEPF TLGIHIGA T++VA+D+ G+ L + TP A Sbjct 78 LSASGAVGRPRVPFETNHEPFATLGIHIGAAVTTLVASDIRGKLLGGIRIATPLGHQLTA 137 Query 147 LTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGL 206 L S+A SA + R+ RR+ LW G+ LGG VD +G HPRL W APVG V+ +ALG+ Sbjct 138 LASIAQSAASFTARF-RRQFLWAGIALGGRVDPRSGTATHPRLDWLDAPVGEVIGEALGV 196 Query 207 PVSVASHVDAMAGAELMLGMRRFAPSSS--TSLYVYARETVGYALMIGGRVHCPASGPGT 264 PVSV+ HV+AMA AEL+ + A S++ +SLY YARETVG AL + GRVH P SGPG+ Sbjct 197 PVSVSPHVEAMAAAELLFTPTQDAASANERSSLYFYARETVGTALTLDGRVHTPNSGPGS 256 Query 265 IAPLPVHSEM---LGGTGQLESTVSDEAVLA-AARRLRIIPGIASRTRTGGSATAITDLL 320 I+ P S + G G LE+TVSD+A++ R + P AS IT+L Sbjct 257 ISHFPTGSSVACPCGRNGCLEATVSDQAMIDRGIERGVLSPDTAS----------ITELH 306 Query 321 RVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTA 380 ARAG+ A +L ERA VLG VA+LRDL NPD+V++GGQAFT++PEAM +F Sbjct 307 HKARAGDPSATAILTERAEVLGQIVAMLRDLFNPDDVILGGQAFTQFPEAMPAFAQSFAR 366 Query 381 GSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRS 422 + L R++ VT FGNRVQE A V+LS L+ADPL AL+++ Sbjct 367 NTALLGRNVLVTGFGNRVQEHAAAAVALSVLHADPLAALQKA 408 >gi|343925370|ref|ZP_08764890.1| putative NagC family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343764636|dbj|GAA11816.1| putative NagC family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=387 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 198/398 (50%), Positives = 250/398 (63%), Gaps = 20/398 (5%) Query 26 YVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERA 85 +V P L LS+ AA V RA RL GP+ RD A T LSI+TVNRQV ALL+AGL+RERA Sbjct 2 HVSTPRLELSNKPAALVLRAARLAGPLFRDDAAERTGLSISTVNRQVSALLKAGLIRERA 61 Query 86 DLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPR-NAAG 144 DLA SGAIGRPR+P EVN F+TLGIHIG + TSI DL R + ++ PTP + Sbjct 62 DLAPSGAIGRPRLPFEVNLAEFLTLGIHIGYKVTSITTHDLLHRVVGAIQIPTPEADTPE 121 Query 145 AALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADAL 204 L ++ SA R+ +RW +R LWVGV LGG V + G VDHPRLGW APVG V+A+A+ Sbjct 122 ETLAAIGVSARRFAERWTGKRVLWVGVALGGRV-AEGGIVDHPRLGWEGAPVGRVIAEAV 180 Query 205 GLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGT 264 GLPVSVASHV+AMA AEL+L S+ LY YARE +G A +GG VH P +GP Sbjct 181 GLPVSVASHVEAMAAAELVLNP---VDEQSSFLYFYAREMLGIAFSVGGTVHTPTAGPPV 237 Query 265 IAPLPVHSEMLGG---TGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLR 321 I P + L TG+LE VSD ++ AAR L G S T + L Sbjct 238 IGHFPTGATTLLDPHRTGRLEPAVSDTGIVEAARAL------------GLSVTDVEGLHG 285 Query 322 VARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAG 381 +ARAG+ + L ERA VLG V L+ D+ NPD +++GGQAFT+YP ++ V A Sbjct 286 LARAGDATTRALFEERAEVLGRTVGLIADIFNPDHIILGGQAFTDYPTSLPTVARAVRET 345 Query 382 SVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGAL 419 S++A RD+RV+ G VQ+ AG VSL +Y+DPL A+ Sbjct 346 SIVAKRDVRVSHSGATVQQQAAGAVSLDAIYSDPLQAI 383 >gi|296394473|ref|YP_003659357.1| ROK family protein [Segniliparus rotundus DSM 44985] gi|296181620|gb|ADG98526.1| ROK family protein [Segniliparus rotundus DSM 44985] Length=446 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 200/404 (50%), Positives = 259/404 (65%), Gaps = 13/404 (3%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 V+ P L SD A++V A R +G V RDV+A ST LS+ATVNRQV+ALLEAGLLRERAD Sbjct 46 VVQPRLGFSDIPASAVLHAARGKGAVSRDVLAKSTDLSVATVNRQVVALLEAGLLRERAD 105 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAA 146 LA SG +GRPRVPVE++H P++ LG+++G + SIVA D+ G+ LD+ E PTPR A A Sbjct 106 LAPSGLVGRPRVPVEIDHAPYLVLGVYVGLNSVSIVAGDIRGKILDSAEFPTPRGNAQDA 165 Query 147 LTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGL 206 L +A SA +YL RW RRR LW GV G VD G P LGW+ AP+ ++ LGL Sbjct 166 LEQIASSARQYLARWPRRRPLWAGVASVGTVDPVLGTTTRPELGWKDAPLATAISAKLGL 225 Query 207 PVSVASHVDAMAGAELMLGMRRFAPSSS----TSLYVYARETVGYALMIGGRVHCPASGP 262 P S+A+ V+A+A AEL+L +S T+++ Y RE++G AL I GRV P SGP Sbjct 226 PTSLAAQVEAVAAAELLLPPSNHLATSPTRQRTTMHFYGRESLGTALTIDGRVRTPKSGP 285 Query 263 GTIAPLPVHSEML---GGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDL 319 GTIA LPV S++L G+G L VSD AV A R I G + R SA + D+ Sbjct 286 GTIARLPVRSKLLLGHDGSGALAEAVSDSAVALAWTR---ITGAKPQAR---SAQTVQDV 339 Query 320 LRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFT 379 +R A AG+ A ELL ER+R+ G + A+ L+NPDEVV+GGQAFT YP A QV AF Sbjct 340 IREAVAGDALAHELLRERSRLFGESAAIAASLVNPDEVVLGGQAFTAYPNAAAQVAEAFH 399 Query 380 AGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSG 423 S +R T G ++QE A V+LS ++ADP+GA R++G Sbjct 400 EASATPGVPVRATRLGAKIQEFAALAVALSSVWADPIGAWRQAG 443 >gi|317508249|ref|ZP_07965929.1| ROK family protein [Segniliparus rugosus ATCC BAA-974] gi|316253424|gb|EFV12814.1| ROK family protein [Segniliparus rugosus ATCC BAA-974] Length=412 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 199/404 (50%), Positives = 260/404 (65%), Gaps = 13/404 (3%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 V+ P L SD A++V A R +G V RDV+A ST LS+ATVNRQV+ALL+AGLLRERAD Sbjct 12 VVQPRLGFSDIPASAVLHAARGKGAVSRDVLAKSTDLSVATVNRQVVALLDAGLLRERAD 71 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAA 146 LA SG +GRPRVPVE++HEP++ LG+++G SIVA D+ G+ LD+ E TPR A Sbjct 72 LAPSGLVGRPRVPVEIDHEPYLVLGVYVGLNAVSIVAGDIRGKVLDSAEFATPRGNVKDA 131 Query 147 LTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGL 206 L +A SA +YL RW RRR LW GV G+VD +G LGW+ AP+ ++ LGL Sbjct 132 LEQIASSARQYLVRWPRRRPLWAGVASVGSVDPVSGTTSRAELGWKDAPLAGAISAKLGL 191 Query 207 PVSVASHVDAMAGAELMLGMRRFAPSSS----TSLYVYARETVGYALMIGGRVHCPASGP 262 P S+A V+A+A AEL+L +S T+L+ Y RE++G AL IGGRVH P SGP Sbjct 192 PTSLAVQVEAVAAAELLLPPSNHVVTSPVRERTTLHFYGRESLGTALTIGGRVHSPKSGP 251 Query 263 GTIAPLPVHSEML---GGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDL 319 GT+A LPV S++L G G L VSD A A RL G +R SA + D+ Sbjct 252 GTVAHLPVRSKLLLGHDGVGTLAEAVSDSAFALAWNRLT---GAKPHSR---SAQTVQDV 305 Query 320 LRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFT 379 +R A AG+ A+ELL ER+R+ G + A+ +NPDEVV+GGQA T YPEA EQV AF Sbjct 306 IRQAAAGDSVAQELLGERSRLFGESAAIAASFVNPDEVVLGGQALTAYPEAAEQVAKAFH 365 Query 380 AGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSG 423 S + +R T G++VQE A V+LS ++ADP+GA R++G Sbjct 366 EASAMPGVSVRATRLGSKVQEFAALAVALSAVWADPIGAWRQAG 409 >gi|326383578|ref|ZP_08205264.1| ROK family protein [Gordonia neofelifaecis NRRL B-59395] gi|326197662|gb|EGD54850.1| ROK family protein [Gordonia neofelifaecis NRRL B-59395] Length=425 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 192/398 (49%), Positives = 241/398 (61%), Gaps = 20/398 (5%) Query 26 YVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERA 85 +V L LS AAA V R R+ GPV RD A T LSI+TVNRQV ALL+AGL+RERA Sbjct 40 HVTTAKLQLSTKAAALVLRTARVSGPVFRDDAAALTGLSISTVNRQVSALLKAGLIRERA 99 Query 86 DLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPR-NAAG 144 DL GA+GRPRVP EVN + F+ +GIHIG + TSI DL R + PTP+ + Sbjct 100 DLTPPGAVGRPRVPFEVNTDGFLAVGIHIGYKVTSITTHDLEHRVAGAIAIPTPQADDPE 159 Query 145 AALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADAL 204 + + SA R+ RW +R LW GV +GG V G+VDHPRLGW PVG ++A+AL Sbjct 160 EVVAQIGASARRFADRWVGKRLLWAGVAIGGRVADG-GYVDHPRLGWEGVPVGRLVAEAL 218 Query 205 GLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGT 264 GLPVSVASHV+AMA AE ++ A S LY YARE VG A + G VH PA+GP T Sbjct 219 GLPVSVASHVEAMAAAEQVVNP---ADQSQNFLYFYAREMVGIAFSVDGTVHTPAAGPPT 275 Query 265 IAPLPVHSEML---GGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLR 321 I P + L TG+LE TVSD V+ AA+ G ++ +L Sbjct 276 IGHFPTGATKLLDPDRTGRLEQTVSDSGVVYAAQ------------TAGLEVDSVDELRT 323 Query 322 VARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAG 381 +AR G+ A E+L ER VLG VAL+ D+ NPD V++GGQAFT+YPEA+ V A A Sbjct 324 LARTGDTVANEILIERGEVLGRTVALISDIFNPDHVILGGQAFTDYPEALPAVSKALRAT 383 Query 382 SVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGAL 419 +V+ RD+RV VQ+ AG V+L +YADPL AL Sbjct 384 TVITKRDVRVARSAITVQQKAAGAVALDAIYADPLDAL 421 >gi|262204331|ref|YP_003275539.1| ROK family protein [Gordonia bronchialis DSM 43247] gi|262087678|gb|ACY23646.1| ROK family protein [Gordonia bronchialis DSM 43247] Length=396 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 195/404 (49%), Positives = 247/404 (62%), Gaps = 23/404 (5%) Query 26 YVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERA 85 +V P L LS AA V RA RL GP+ RD A T LSI+TVNRQV ALL AGL+RERA Sbjct 2 HVATPHLELSTKPAALVLRAARLSGPLFRDDAAARTGLSISTVNRQVGALLRAGLIRERA 61 Query 86 DLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTP-RNAAG 144 DLA +GAIGRPR+P E+N F+T+GIHIG + TSI DL R + ++ PTP + Sbjct 62 DLAPAGAIGRPRLPFEINVSDFLTVGIHIGLKVTSITTHDLLHRVVGAIQIPTPVAESPE 121 Query 145 AALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADAL 204 A L + SA R+ RW RR LW GV +GG V + VDHPRLGW+ APVG V+A+ L Sbjct 122 ATLAVIGASARRFAARWTGRRVLWAGVAIGGKVGTGGV-VDHPRLGWQGAPVGRVIAENL 180 Query 205 GLPVSVASHVDAMAGAELMLG------MRRFAPSSSTSLYVYARETVGYALMIGGRVHCP 258 GLPVSVASHV+AMA AEL++ + S+ LY YARE VG A +GG VH P Sbjct 181 GLPVSVASHVEAMAAAELVVNPDDASDPTKSDEEKSSFLYFYAREMVGVAFSVGGTVHTP 240 Query 259 ASGPGTIAPLPVHSEML---GGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATA 315 +GP I P + TGQLE TVSD ++ AA+ L G S + Sbjct 241 TAGPPVIGHFPTGATTRLDPTRTGQLEPTVSDTGIVEAAQAL------------GLSVSE 288 Query 316 ITDLLRVARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVE 375 I D+ +AR G+ A+E+L ERARVLG + L+ D+ NPD +++GGQAFT+YP + V Sbjct 289 IEDVHVLARDGDAVAREILEERARVLGRTIGLVADIFNPDHIILGGQAFTDYPATLPVVA 348 Query 376 AAFTAGSVLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGAL 419 A SV + RD+RV+ G VQ+ AG VSL +Y DPL A+ Sbjct 349 RAVRETSVSSKRDVRVSHSGATVQQQAAGAVSLDAIYNDPLEAV 392 >gi|296137968|ref|YP_003645211.1| ROK family protein [Tsukamurella paurometabola DSM 20162] gi|296026102|gb|ADG76872.1| ROK family protein [Tsukamurella paurometabola DSM 20162] Length=432 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 190/402 (48%), Positives = 250/402 (63%), Gaps = 18/402 (4%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 V PP L +S+ AA+V R +R G V RD I T LS ATVNRQV AL+EAGL+RERAD Sbjct 45 VFPPQLRVSEKPAAAVLRVIRRGGLVLRDEIVRETQLSAATVNRQVTALIEAGLVRERAD 104 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAA-GA 145 A SG +GRPR+P+EV+ + LGIHIG R +++ D+ G+ + ++ PTP + G Sbjct 105 RAASGVVGRPRLPLEVDPTGPLALGIHIGFRVSTVTMHDVSGKIVGAIQIPTPESGEPGE 164 Query 146 ALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALG 205 L+ +A SA R+L RW R L G+ +GG VD DHPRLGW+ +G L+ A+G Sbjct 165 VLSVIATSARRFLARWDGRTILGAGIAIGGRVDDRGVVADHPRLGWKDVALGERLSGAIG 224 Query 206 LPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTI 265 LPV+VA HV+AMA AEL L S ++LY Y RETVG AL + G VH P SGP TI Sbjct 225 LPVTVAPHVEAMAAAELHLS--ESLESQGSTLYFYGRETVGVALALHGAVHSPKSGPHTI 282 Query 266 APLPVHSEML---GGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRV 322 LP + L GTG+LE V+D AV+ AA+ + +A RT + DL ++ Sbjct 283 GHLPTRNVTLLDPRGTGRLEDAVTDTAVVEAAQ----VQKLAVRT--------VADLHKL 330 Query 323 ARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGS 382 A GN AK ++AER RVLG A AL+ D+ NPD +++GGQAFT+YP + V AA A S Sbjct 331 AEGGNATAKAIIAERGRVLGEAAALVADIFNPDRLILGGQAFTDYPAILPHVSAALKATS 390 Query 383 VLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRRSGA 424 R +RV+ G RVQ+ AG +L G+YADPLGA+ R+ A Sbjct 391 AEPSRAVRVSGAGGRVQQQAAGAAALDGVYADPLGAIARATA 432 >gi|262200803|ref|YP_003272011.1| ROK family protein [Gordonia bronchialis DSM 43247] gi|262084150|gb|ACY20118.1| ROK family protein [Gordonia bronchialis DSM 43247] Length=374 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 176/397 (45%), Positives = 234/397 (59%), Gaps = 33/397 (8%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 V+P +L ++ + AA+V AVR+ GP+ RD I +T LS ATVNRQV AL GL+ ER D Sbjct 4 VVPATLQVTSTPAAAVLHAVRMGGPMTRDHITSTTGLSAATVNRQVHALAAHGLIVERPD 63 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAA 146 L GAIGRP+ P+ ++ + G+HIGAR T + DL GRTL + TP A AA Sbjct 64 LTDPGAIGRPKNPLTIDRDSLCVAGMHIGARRTVLAIADLGGRTLYSHAVLTPEGEASAA 123 Query 147 LTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGL 206 + +L R+ RR LW GV +GGAVD+ TG V HP LGWRQ +G LA+ALG+ Sbjct 124 VDALCALLAELAGRFSGRRLLWGGVAIGGAVDTETGVVSHPVLGWRQQRIGARLAEALGV 183 Query 207 PVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIA 266 PVSV HV+AMA AEL+L R + L+ YARET G A+ + GRVH P G GTIA Sbjct 184 PVSVCEHVEAMAAAELLLTSPR--ADDGSGLFFYARETAGMAMTLDGRVHVPQRGAGTIA 241 Query 267 PLPVHSEMLGG---TGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVA 323 LPV + +L G +L+ + DE LAAA RL + + D Sbjct 242 HLPVQAPVLLGDDAQARLQDVIGDEPALAAATRLGV---------------GVDD----- 281 Query 324 RAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSV 383 ++ ERAR+LG VA++RD++NPD +VV G AF +P + V+AAF + Sbjct 282 -------PRIVDERARLLGRCVAMIRDVINPDSIVVAGDAFAAHPAGLAPVQAAFDEATT 334 Query 384 LA-PRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGAL 419 LA P +I + FG RVQEA A +V+LS +YADP+ A+ Sbjct 335 LAWPLEISPSRFGVRVQEASAIVVALSVIYADPVAAV 371 >gi|343925774|ref|ZP_08765289.1| putative NagC family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343764125|dbj|GAA12215.1| putative NagC family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=434 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 177/397 (45%), Positives = 232/397 (59%), Gaps = 33/397 (8%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 V+P +L L+ + AA+V A+R+ GPV RD +A +T LS AT+NRQV AL GL+ ER D Sbjct 64 VIPAALQLTSTPAAAVLHAIRIGGPVTRDQLASTTGLSAATINRQVHALAAHGLVAERPD 123 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAA 146 LA IGRP+ P+ ++ + G+HIGAR + +V DL GRTL + TP A Sbjct 124 LAGPKTIGRPKNPLTIDRDSLCVAGLHIGARRSVLVIADLGGRTLHSHAVLTPSGDQQEA 183 Query 147 LTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGL 206 + L R+ RR LW GV LGGAVD+ TG VDH LGW Q PVG LA L Sbjct 184 IEQLCARLAELAGRFGGRRLLWGGVALGGAVDAETGVVDHRVLGWHQLPVGETLAARLDT 243 Query 207 PVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIA 266 PVSV HV+AMA AEL+L R A S T L+ YARET G A+ + GRVH P G GTIA Sbjct 244 PVSVCEHVEAMAAAELLLAGSRDA--SGTGLFFYARETAGMAMTLEGRVHVPERGAGTIA 301 Query 267 PLPVHSEML--GGTG-QLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVA 323 LPV + +L G T +L++ + D+A AAA RL I P Sbjct 302 HLPVSAPVLAPGHTRVRLQNVIGDDAAQAAAHRLGIDP---------------------- 339 Query 324 RAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSV 383 + ++ ERARVLG AVA++RD++NPD +VV G AF+ +P + V+AAF S Sbjct 340 -----DSSRIVDERARVLGEAVAMIRDVINPDTIVVAGDAFSAHPHGLAPVQAAFDEAST 394 Query 384 LA-PRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGAL 419 L P +I + FG VQE+ A +V+LS +YADP+ A+ Sbjct 395 LDRPLEIAPSRFGVHVQESAAVVVALSVIYADPIAAV 431 >gi|326384029|ref|ZP_08205712.1| ROK family protein [Gordonia neofelifaecis NRRL B-59395] gi|326197189|gb|EGD54380.1| ROK family protein [Gordonia neofelifaecis NRRL B-59395] Length=378 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 177/399 (45%), Positives = 228/399 (58%), Gaps = 35/399 (8%) Query 27 VMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERAD 86 V+ L AA+V AVR+ P RD + T LS ATVNRQV ALLEAGL+ ER D Sbjct 6 VVAAPLRFGTGPAAAVLNAVRVGAPATRDRLVADTGLSAATVNRQVNALLEAGLVIERPD 65 Query 87 LAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNA---A 143 L +GRP++P+ ++ + F G+HIGAR T++V D+ GRTL + T A A Sbjct 66 LLGHTGVGRPKLPLTLDRDRFCVAGMHIGARRTALVIADVGGRTLYSHAIRTQELAGVDA 125 Query 144 GAALTSLADSADRYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADA 203 GAA+ L D R+ RR LW G LGG VD ATG VDH L WR+ P+G L A Sbjct 126 GAAVERLCDLLAELAGRFSGRRVLWAGAALGGVVDDATGVVDHTILKWRRQPLGDRLHAA 185 Query 204 LGLPVSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPG 263 LG+PVSV+ HV AMA AEL+L S +SL+ YARETVG AL+I G VH PA G G Sbjct 186 LGVPVSVSEHVQAMAAAELLL--SSTVERSGSSLFFYARETVGMALIIDGEVHQPARGAG 243 Query 264 TIAPLPVHSEMLGG--TGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLR 321 TIA L V +L L+S + AV AAA RL + S++A+ D Sbjct 244 TIAGLRVQPGVLATEPVAPLQSVIGTAAVKAAAARLGV----------EASSSAVAD--- 290 Query 322 VARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAG 381 +RARVLG AVA +RD+LNPD + V G AF+ +P + V+AAF A Sbjct 291 --------------DRARVLGEAVATMRDVLNPDAITVAGDAFSAHPHGLAPVQAAFDAA 336 Query 382 SVLA-PRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGAL 419 ++L P +I T FG +V ++ A V+LS +YADPLG + Sbjct 337 TLLPRPLEIVPTCFGVQVPDSAAVAVALSAVYADPLGVV 375 >gi|289568405|ref|ZP_06448632.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289542158|gb|EFD45807.1| transcriptional regulator [Mycobacterium tuberculosis T17] Length=130 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 122/123 (99%), Positives = 123/123 (100%), Gaps = 0/123 (0%) Query 1 VYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 +YSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS Sbjct 1 MYSTNRTSQSLSRKPGRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGS 60 Query 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS Sbjct 61 TSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTS 120 Query 121 IVA 123 IVA Sbjct 121 IVA 123 >gi|134099830|ref|YP_001105491.1| ROK family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006135|ref|ZP_06564108.1| ROK family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912453|emb|CAM02566.1| possible transcriptional regulator, ROK family [Saccharopolyspora erythraea NRRL 2338] Length=397 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 163/388 (43%), Positives = 215/388 (56%), Gaps = 18/388 (4%) Query 36 DSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGR 95 ++ AA V A+R GP+ R I+ SLS+ATV+RQV AL E GL+RE +L GAIGR Sbjct 19 EANAALVLGAIRQEGPLSRAAISRRVSLSMATVSRQVAALAELGLVREVPELTRHGAIGR 78 Query 96 PRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSAD 155 PRVPV+++ G+HIG TT+ DL G L + PTPR+A AL ++A+ Sbjct 79 PRVPVDIDDSSIAACGVHIGVTTTTCGLADLRGGLLCSDRIPTPRSAPEDALATIAERVR 138 Query 156 RYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVD 215 L+ R + +G+ GG VD A G VDH RLGWR P +L A GLPV + HV Sbjct 139 ALLRCRPERTVVGLGLATGGRVDIAEGLVDHDRLGWRAVPARTLLESATGLPVHLDGHVP 198 Query 216 AMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIAPLPVHSEM- 274 AMA AE++ G R AP S LY YARE VG A+ + GR H G IA LP+ + Sbjct 199 AMANAEVLFGPGR-APRS--LLYFYAREVVGVAIAVDGRPHRGPGRAGDIAHLPIGGDQR 255 Query 275 --LGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQAKE 332 G TG LE+TVS+EAV A +I R G A AG+ A Sbjct 256 CRCGRTGCLEATVSEEAVTRRAVEAGVI--AEPDMRLLGEAD---------DAGDPVASR 304 Query 333 LLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLAPRDI-RV 391 LLAERA+ +G AVA+LRD+++PD VV+GGQA T+ P+ ++ + +F A + L ++ + Sbjct 305 LLAERAQAIGRAVAMLRDVVDPDAVVLGGQAITDAPDYVDDLLHSFAAHTALPGGELPAI 364 Query 392 TVFGNRVQEAGAGIVSLSGLYADPLGAL 419 T FG VQ A L LY P L Sbjct 365 TRFGPDVQAVAACTSVLGRLYGHPYALL 392 >gi|257056317|ref|YP_003134149.1| transcriptional regulator/sugar kinase [Saccharomonospora viridis DSM 43017] gi|256586189|gb|ACU97322.1| transcriptional regulator/sugar kinase [Saccharomonospora viridis DSM 43017] Length=396 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 160/385 (42%), Positives = 215/385 (56%), Gaps = 18/385 (4%) Query 36 DSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGR 95 ++ AA+V A+R GP+ R IA TSLS+ TV+RQV L+E GLL E D ++G +GR Sbjct 20 EANAAAVLSAIRAYGPLSRRAIARHTSLSMPTVSRQVSTLIELGLLSELPDPPLTGEVGR 79 Query 96 PRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSAD 155 P VPV++N + G+HIG TT+ + L G LD+ PTP A L +A + Sbjct 80 PTVPVDLNSDVIAACGVHIGVTTTTYGLSTLRGELLDSERIPTPSGAPEEVLRRIAREVE 139 Query 156 RYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVD 215 +L W RR + VG+ +GG VD G +DH LGW P ++ + LPV V HV Sbjct 140 AFLGDWPERRIIGVGLAIGGQVDVERGLLDHEPLGWHGVPARTIMEEITALPVYVDGHVP 199 Query 216 AMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHCPASGPGTIAPLPVHSEML 275 AMA AEL+ G A + ++LY YARE VG A+ +GG +H G+IA LPV S++L Sbjct 200 AMATAELLFGE---ATHARSALYFYAREMVGAAVAVGGVLHRGPGQSGSIAHLPVGSDVL 256 Query 276 ---GGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQAKE 332 G TG LE+TVS+ +VL A R G+ R I L VA AG+ A Sbjct 257 CPCGRTGCLEATVSERSVLERAVR----AGVLDRPD-------IRTLHEVAAAGDAIAHR 305 Query 333 LLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLAPRDIR-V 391 +L ERA LG AVALLRD++NP+ VV+ GQA T+ P ++ V A+ +VL R + V Sbjct 306 ILTERAHALGRAVALLRDIVNPELVVLAGQAITDAPAYLDAVYGAYADTTVLPDRGLMTV 365 Query 392 TVFGNRVQEAGAGIVSLSGLYADPL 416 T FG VQ A L+ LY P Sbjct 366 TRFGPDVQAMAACAGLLARLYERPF 390 >gi|254819813|ref|ZP_05224814.1| ROK family protein [Mycobacterium intracellulare ATCC 13950] Length=147 Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 112/126 (89%), Positives = 117/126 (93%), Gaps = 0/126 (0%) Query 16 GRKHQLRSHRYVMPPSLHLSDSAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIAL 75 G+K R ++PP+LH+ DSAAASVFRAVRLRGPVGRDVIAG TSLSIATVNRQVIAL Sbjct 21 GQKGHRSVRRQIVPPALHIPDSAAASVFRAVRLRGPVGRDVIAGVTSLSIATVNRQVIAL 80 Query 76 LEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVE 135 LEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVE Sbjct 81 LEAGLLRERADLAVSGAIGRPRVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVE 140 Query 136 TPTPRN 141 TPTPRN Sbjct 141 TPTPRN 146 >gi|213863348|ref|ZP_03386603.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length=83 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/83 (99%), Positives = 82/83 (99%), Gaps = 0/83 (0%) Query 169 VGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRR 228 VGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMR Sbjct 1 VGVTLGGAVDSATGHVDHPRLGWRQAPVGPVLADALGLPVSVASHVDAMAGAELMLGMRG 60 Query 229 FAPSSSTSLYVYARETVGYALMI 251 FAPSSSTSLYVYARETVGYALMI Sbjct 61 FAPSSSTSLYVYARETVGYALMI 83 >gi|302551425|ref|ZP_07303767.1| ROK-family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302469043|gb|EFL32136.1| ROK-family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length=399 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 135/390 (35%), Positives = 180/390 (47%), Gaps = 27/390 (6%) Query 37 SAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRP 96 ++A+ V R+V GPV R IA T LS A+V E GL+RE A L S +GRP Sbjct 24 TSASVVLRSVLEHGPVARSTIARLTGLSPASVTDYCARFAELGLIRESAVLRRSRGVGRP 83 Query 97 RVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADR 156 +PV+++ FV G+H+ T++ DL GR + E L AD Sbjct 84 HLPVDLDDSRFVVGGVHVAVPYTTVALLDLRGRVVARREVKHEGTEPAQVLARAADGLRA 143 Query 157 YLQRWRRRRALWVGVTLGGAVDSATGH-VDHPRLGWRQAPVGPVLADALGLPVSVASHVD 215 L AL VG GG VD +G V+HP LGWR+ PV VL GLPV V H Sbjct 144 LLAGAPGSTALGVGFAAGGWVDRDSGTVVEHPLLGWREVPVREVLGGHTGLPVHVDGHAR 203 Query 216 AMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHC-PASGPGTIAPLPV---- 270 A+ AE + G R S + L+++A V A VH P S G IA LPV Sbjct 204 ALVNAERLFGGAR---GSRSVLHLFAGNVVDAAFATNDEVHHGPRSQAGAIAHLPVPGGT 260 Query 271 HSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQA 330 S G G L+ +S+ + AR ++ G+ G +A AG+ A Sbjct 261 ESCDCGRVGCLQEELSERTLCRQAREAGVVDGVNPMHVVGAAA-----------AGDPVA 309 Query 331 KELLAERARVLGGAVALLRDLLNPDEVVVG--GQAFTEYPEAMEQVEAAFTAGSVLAPRD 388 LL ER+R +G AV LL D+LNP+ VVV G + E A + E + ++P Sbjct 310 VRLLLERSRRVGRAVGLLLDVLNPERVVVTEIGVMYREDCLAALREEVETGRAATVSP-- 367 Query 389 IRVTVFGNRVQEAGAGIVSLSGLYADPLGA 418 F + V G V+L LY DPLGA Sbjct 368 ---ISFPDSVLAVAGGSVALDVLYRDPLGA 394 >gi|345002919|ref|YP_004805773.1| ROK family protein [Streptomyces sp. SirexAA-E] gi|344318545|gb|AEN13233.1| ROK family protein [Streptomyces sp. SirexAA-E] Length=417 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 132/395 (34%), Positives = 179/395 (46%), Gaps = 29/395 (7%) Query 37 SAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRP 96 S SV A+ GPV R +A T LS A+V V LL GL+RE A+ +GRP Sbjct 29 SGTGSVLGAILDHGPVARSTVARLTGLSPASVTGHVGQLLSRGLVRESAETTGPRGLGRP 88 Query 97 RVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADR 156 VPVE++ F+ G HI +++ DL GR + P L LA R Sbjct 89 HVPVEIDTARFLVAGAHIAVAHSTVSLMDLRGRVVAEERKPHRDTDPRRVLDDLAARLPR 148 Query 157 YL-QRWRRRRALWVGVTLGGAVDSATG-HVDHPRLGWRQAPVGPVLADALGLPVSVASHV 214 R+ L +GV G VD+A G VDHP LGW PV +L A GLPV V SH Sbjct 149 LTAAHAAGRQVLALGVATGHRVDTAAGVVVDHPHLGWCAVPVREILTAATGLPVHVDSHS 208 Query 215 DAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVH-CPASGPGTIAPLPV--- 270 A+A AE M G + ++++ ++ V A G +H P SG G++A LP+ Sbjct 209 RALARAEQMFGE---VSTRASTVLLFVGAVVDAAFATSGELHRGPRSGAGSVAHLPLGAG 265 Query 271 -----HSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARA 325 S G TG L+S VS+ A++ A + G +LL A A Sbjct 266 GSGDAESCGCGRTGCLQSEVSERAMIRRAAEQSLYVGT------------FQELLDHALA 313 Query 326 GNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLA 385 G +A +L RAR++G A ALL D+ +P+ +VV PE + + S + Sbjct 314 GEPRAVDLFRRRARLVGRAAALLLDMFDPECLVVVEPGAGRLPECLADLREEVGMRSSVC 373 Query 386 PRDIRVTV---FGNRVQEAGAGIVSLSGLYADPLG 417 R V F V G V+L LY DPLG Sbjct 374 DDPERAVVPSSFTGSVLATAGGAVALGALYTDPLG 408 >gi|256392953|ref|YP_003114517.1| ROK family protein [Catenulispora acidiphila DSM 44928] gi|256359179|gb|ACU72676.1| ROK family protein [Catenulispora acidiphila DSM 44928] Length=416 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 129/401 (33%), Positives = 185/401 (47%), Gaps = 31/401 (7%) Query 37 SAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRP 96 ++A + R V GP R I T LS A++ L+ GLLR+ D S +GRP Sbjct 32 ASAGGILRTVLGHGPAARSTIGRLTGLSPASMTGYCTELIGLGLLRDLPDQTQSNGLGRP 91 Query 97 RVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADR 156 +PV+++ V +HI ++ DL GR L + P + A +A +++ +A Sbjct 92 HLPVDIDTARHVVGAVHIAVPHVTVAVLDLRGRVLASRRIP---HLARSADSTVRHAARC 148 Query 157 YLQRWRRRRA----LWVGVTLGGAVDSATG-HVDHPRLGWRQAPVGPVLADALGLPVSVA 211 L+ R+ A L +GV GG VD TG V+H LGW Q + +L + GLPV V Sbjct 149 LLELLRQDGAGAAPLGIGVACGGWVDQETGVVVEHTMLGWSQVRIRDLLREHTGLPVYVD 208 Query 212 SHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHC-PASGPGTIAPLPV 270 H A+ E + G R A S L+++ V A +G H P S G IA L + Sbjct 209 GHSRALLHGERLFGAARGAES---VLHLFVGNVVEAAFALGDAAHYGPRSQAGAIAHLRL 265 Query 271 HSEM----LGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAG 326 G TG ++ VS+ V A A ++P LL AR G Sbjct 266 ADSTEHCPCGRTGCFQAAVSERTVTARAVESGVVP-----------VHDFPALLTAARTG 314 Query 327 NQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGS---V 383 ++ A +LL ERAR++G A+L D+ +P+ VVV QA T P A+ + A A S + Sbjct 315 HRAALDLLVERARLVGQGAAMLIDVFDPELVVVAEQAVTTLPSALAALRAEVAASSRTRI 374 Query 384 LAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLG-ALRRSG 423 A + + F G V L+ LY DPL A RRSG Sbjct 375 DAASAVVPSSFAGNTLAIAGGSVILNALYRDPLAVAPRRSG 415 >gi|29831963|ref|NP_826597.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29609080|dbj|BAC73132.1| putative ROK-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length=410 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 130/387 (34%), Positives = 175/387 (46%), Gaps = 23/387 (5%) Query 37 SAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRP 96 ++A++V R+V GPV R +A T LS A+V E GLL E + SG +GRP Sbjct 35 TSASAVLRSVLEHGPVARSTVARLTGLSPASVTDYCARFAELGLLHEASVPRRSGGVGRP 94 Query 97 RVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADR 156 VPV+++ FV G+H+ T++ DL GR + R L AD Sbjct 95 HVPVDLDDSRFVVGGVHVAVPYTTVALLDLRGRVVAERRLKHDRTEPSLVLARAADGLAA 154 Query 157 YLQRWRRRRALWVGVTLGGAVDSATGH-VDHPRLGWRQAPVGPVLADALGLPVSVASHVD 215 L R L VGV GG VD +G V+HP LGWR PV VL GLPV V H Sbjct 155 LLSAAADRTPLGVGVAAGGWVDRDSGTIVEHPLLGWRDIPVRDVLGAHTGLPVQVDGHAR 214 Query 216 AMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHC-PASGPGTIAPLPV---- 270 A+ GAE + G R S + L+++ V A VH P S G IA LP+ Sbjct 215 ALVGAERLFGRAR---GSRSLLHLFVGNVVDAAFATNDEVHHGPRSQAGAIAHLPLRGGA 271 Query 271 HSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQA 330 + G G L+ +S+ A+ AR + G+ ++ A G+ A Sbjct 272 ETCDCGRVGCLQVELSERALCRRARAAGLAVGVNP-----------VRVVEAAAGGDPVA 320 Query 331 KELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGSVLAPRDIR 390 LL ERAR++G A LL D+LNPD VVV + + + A A + Sbjct 321 VRLLVERARMIGRAAGLLLDILNPDTVVVTEIGIIHREDCLAALREAVGPQRAAA---VV 377 Query 391 VTVFGNRVQEAGAGIVSLSGLYADPLG 417 T F + V G V+L LY DPLG Sbjct 378 PTSFPDSVLAVAGGSVALDVLYRDPLG 404 >gi|290960354|ref|YP_003491536.1| hypothetical protein SCAB_59791 [Streptomyces scabiei 87.22] gi|260649880|emb|CBG72996.1| putative membrane protein [Streptomyces scabiei 87.22] Length=429 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 136/399 (35%), Positives = 182/399 (46%), Gaps = 39/399 (9%) Query 37 SAAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRP 96 ++A+ V R+V GPV R IA T LS A+V GLLRE + GRP Sbjct 47 TSASVVLRSVLEHGPVARSNIARVTGLSPASVTDYCARFTGLGLLREAEPPRRAKGTGRP 106 Query 97 RVPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLD--------TVETPTPRNAAGAALT 148 VP++++ FV G+H+ T++ DL GR ++ T P AAG L Sbjct 107 HVPLDLDDSRFVVGGVHVAVPYTTVALLDLRGRVVEERRLKHGTTDPAPVLARAAG-ELR 165 Query 149 SLADSADRYLQRWRRRRALWVGVTLGGAVDSATGH-VDHPRLGWRQAPVGPVLADALGLP 207 +L D+A R L VG GG VD TG V+HP LGWR+ PV +L GLP Sbjct 166 ALLDAAPDC-------RPLAVGFAAGGWVDRETGTVVEHPLLGWREVPVREILGALTGLP 218 Query 208 VSVASHVDAMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVHC-PASGPGTIA 266 V V H A+ GAE + G R S + L ++ V A VH P S G IA Sbjct 219 VHVDGHARALVGAEQLFGRAR---GSRSVLQLFVGNMVDAAFATNDEVHHGPRSQAGAIA 275 Query 267 --PLPVHSE--MLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRV 322 PLP +E G TG L++ +S+ + AR +I G + +L Sbjct 276 HLPLPGGTEPCACGRTGCLQAELSERTLCRRARAAGVIDG-----------SNPMRVLEA 324 Query 323 ARAGNQQAKELLAERARVLGGAVALLRDLLNPDEVVVGGQAFTEYPEAMEQVEAAFTAGS 382 A G+ A LL ERAR++G AV LL D+LNP+ V V + + + Sbjct 325 AAGGDAVAAGLLVERARLVGRAVELLLDVLNPETVTVTEIGIIGREDCLAALRETVGPDR 384 Query 383 VLAPRDIRVTVFGNRVQEAGAGIVSLSGLYADPLGALRR 421 A + T F + V G V+L LY DPLGAL R Sbjct 385 AAA---VGPTSFPDSVLAVAGGAVALDVLYRDPLGALAR 420 >gi|288919294|ref|ZP_06413629.1| ROK family protein [Frankia sp. EUN1f] gi|288349288|gb|EFC83530.1| ROK family protein [Frankia sp. EUN1f] Length=441 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 117/329 (36%), Positives = 164/329 (50%), Gaps = 22/329 (6%) Query 38 AAASVFRAVRLRGPVGRDVIAGSTSLSIATVNRQVIALLEAGLLRERADLAVSGAIGRPR 97 +AA+V RAV GPV R I +T LS A V+RQ L+ G+LRE A GRP Sbjct 35 SAAAVLRAVLDHGPVARSFIGSATGLSPAAVSRQTADLISLGVLRELPAAACGPRAGRPS 94 Query 98 VPVEVNHEPFVTLGIHIGARTTSIVATDLFGRTLDTVETPTPRNAAGAALTSLADSADRY 157 VP++V+ + + G+HI + DL GRT+ E P +AA + +A R+ Sbjct 95 VPIDVDTDTHLACGVHIAVPMLTFGLVDLRGRTVAREELPHSGDAA-ELINLIARGLPRF 153 Query 158 LQRWR-RRRALWVGVTLGGAVDSATGH-VDHPRLGWRQAPVGPVLADALGLPVSVASHVD 215 LQR RRR L +GV GG VD TG V+H LGWR +GP+LA GLPV V SH Sbjct 154 LQRHAGRRRVLGLGVVTGGHVDGRTGTVVEHEPLGWRNLQLGPLLAARTGLPVRVDSHAH 213 Query 216 AMAGAELMLGMRRFAPSSSTSLYVYARETVGYALMIGGRVH-CPASGPGTIAPLPV---- 270 A+A AE++ G R + S+ ++++ V A+ G VH S G +A LPV Sbjct 214 ALAEAEILFGEPR---ARSSLVHLFVGNVVDAAIATEGVVHRGLRSAAGGVAHLPVPGAR 270 Query 271 HSEMLGGTGQLESTVSDEAVLAAARRLRIIPGIASRTRTGGSATAITDLLRVARAGNQQA 330 G G ++++SD A+L A I+P L + AG A Sbjct 271 QPCPCGERGCAQASLSDRALLVKAVERGILPRPDPML-----------LQQAVAAGEPAA 319 Query 331 KELLAERARVLGGAVALLRDLLNPDEVVV 359 EL+ R + VA L D+L+P+ +V+ Sbjct 320 VELVRRRLGDIAKVVATLLDMLDPELLVL 348 Lambda K H 0.318 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 897400889630 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40