BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0494
Length=242
Score E
Sequences producing significant alignments: (Bits) Value
gi|15839886|ref|NP_334923.1| GntR family transcriptional regulat... 478 5e-133
gi|254230842|ref|ZP_04924169.1| hypothetical protein TBCG_00487 ... 471 6e-131
gi|289568416|ref|ZP_06448643.1| transcriptional regulator, gntR-... 438 3e-121
gi|183980844|ref|YP_001849135.1| GntR family transcriptional reg... 379 2e-103
gi|118619656|ref|YP_907988.1| GntR family transcriptional regula... 379 2e-103
gi|240171897|ref|ZP_04750556.1| putative transcriptional regulat... 373 2e-101
gi|296168149|ref|ZP_06850170.1| GntR family transcriptional regu... 336 2e-90
gi|289756570|ref|ZP_06515948.1| LOW QUALITY PROTEIN: predicted p... 185 5e-45
gi|29899145|gb|AAP03112.1| putative transcriptional regulator [S... 112 6e-23
gi|467045|gb|AAA17229.1| B2168_C2_205 [Mycobacterium leprae] 104 1e-20
gi|126740909|ref|ZP_01756593.1| Pyruvate dehydrogenase complex r... 99.0 6e-19
gi|262199917|ref|YP_003271126.1| regulatory protein GntR HTH [Ha... 98.6 8e-19
gi|320010201|gb|ADW05051.1| GntR domain protein [Streptomyces fl... 96.3 3e-18
gi|159044518|ref|YP_001533312.1| putative pyruvate dehydrogenase... 94.4 1e-17
gi|92113862|ref|YP_573790.1| GntR family transcriptional regulat... 92.4 5e-17
gi|345008886|ref|YP_004811240.1| GntR domain-containing protein ... 91.3 1e-16
gi|114321432|ref|YP_743115.1| GntR family transcriptional regula... 90.5 2e-16
gi|300313520|ref|YP_003777612.1| transcription regulator protein... 89.4 4e-16
gi|291295830|ref|YP_003507228.1| GntR domain-containing protein ... 89.0 6e-16
gi|120403925|ref|YP_953754.1| regulatory protein GntR [Mycobacte... 88.6 7e-16
gi|226941757|ref|YP_002796831.1| PdhR [Laribacter hongkongensis ... 87.4 2e-15
gi|108799693|ref|YP_639890.1| GntR family transcriptional regula... 87.4 2e-15
gi|327440188|dbj|BAK16553.1| transcriptional regulator [Solibaci... 86.3 4e-15
gi|163738208|ref|ZP_02145624.1| GntR-like protein [Phaeobacter g... 86.3 4e-15
gi|307546140|ref|YP_003898619.1| GntR family transcriptional reg... 85.5 6e-15
gi|89895021|ref|YP_518508.1| hypothetical protein DSY2275 [Desul... 85.5 6e-15
gi|169630101|ref|YP_001703750.1| GntR family transcriptional reg... 85.5 6e-15
gi|111018059|ref|YP_701031.1| GntR family transcriptional regula... 85.1 7e-15
gi|290963031|ref|YP_003494213.1| GntR family transcriptional reg... 85.1 8e-15
gi|334342733|ref|YP_004555337.1| GntR domain-containing protein ... 84.3 1e-14
gi|271963654|ref|YP_003337850.1| GntR family transcriptional reg... 84.3 1e-14
gi|340625616|ref|YP_004744068.1| putative transcriptional regula... 84.0 2e-14
gi|339000166|ref|ZP_08638785.1| GntR family transcriptional regu... 84.0 2e-14
gi|344170578|emb|CCA82999.1| putative transcriptional regulatory... 84.0 2e-14
gi|344174237|emb|CCA86020.1| putative transcriptional regulatory... 83.6 2e-14
gi|226303639|ref|YP_002763597.1| GntR family transcriptional reg... 83.6 2e-14
gi|254471459|ref|ZP_05084861.1| pyruvate dehydrogenase complex r... 83.6 2e-14
gi|15607726|ref|NP_215100.1| GntR family transcriptional regulat... 83.6 2e-14
gi|295695141|ref|YP_003588379.1| GntR domain-containing protein ... 83.6 2e-14
gi|17545797|ref|NP_519199.1| transcriptional regulatory DNA-bind... 83.2 3e-14
gi|254254451|ref|ZP_04947768.1| regulatory protein GntR [Burkhol... 83.2 3e-14
gi|299067046|emb|CBJ38242.1| putative transcriptional regulatory... 83.2 3e-14
gi|297157740|gb|ADI07452.1| transcriptional regulator [Streptomy... 83.2 3e-14
gi|237816546|ref|ZP_04595538.1| GntR family transcriptional regu... 82.8 4e-14
gi|206590434|emb|CAQ37396.1| transcriptional regulatory dna-bind... 82.8 4e-14
gi|126435337|ref|YP_001071028.1| GntR family transcriptional reg... 82.8 4e-14
gi|304407106|ref|ZP_07388760.1| GntR domain protein [Paenibacill... 82.8 4e-14
gi|297250074|ref|ZP_06933775.1| GntR family transcriptional regu... 82.8 4e-14
gi|62316983|ref|YP_222836.1| GntR family transcriptional regulat... 82.8 4e-14
gi|83749283|ref|ZP_00946282.1| Transcriptional regulator, GntR f... 82.4 5e-14
>gi|15839886|ref|NP_334923.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31791675|ref|NP_854168.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97]
gi|57116742|ref|NP_215008.2| GntR family transcriptional regulator [Mycobacterium tuberculosis
H37Rv]
49 more sequence titles
gi|121636411|ref|YP_976634.1| GntR family transcriptional regulator [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148660262|ref|YP_001281785.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148821694|ref|YP_001286448.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
F11]
gi|167970682|ref|ZP_02552959.1| hypothetical transcriptional regulatory protein, gntR-family
[Mycobacterium tuberculosis H37Ra]
gi|224988883|ref|YP_002643570.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253797424|ref|YP_003030425.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 1435]
gi|254363457|ref|ZP_04979503.1| hypothetical transcriptional regulatory protein (probably gntR-family)
[Mycobacterium tuberculosis str. Haarlem]
gi|254549444|ref|ZP_05139891.1| transcriptional regulator, gntR-family protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|289441878|ref|ZP_06431622.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T46]
gi|289446039|ref|ZP_06435783.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
CPHL_A]
gi|289552746|ref|ZP_06441956.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 605]
gi|289573082|ref|ZP_06453309.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
K85]
gi|289744202|ref|ZP_06503580.1| transcriptional regulatory protein, gntR-family [Mycobacterium
tuberculosis 02_1987]
gi|289748987|ref|ZP_06508365.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T92]
gi|289752527|ref|ZP_06511905.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
EAS054]
gi|289760614|ref|ZP_06519992.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
gi|294996002|ref|ZP_06801693.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
210]
gi|297632981|ref|ZP_06950761.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
KZN 4207]
gi|297729956|ref|ZP_06959074.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
KZN R506]
gi|298523973|ref|ZP_07011382.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|313657285|ref|ZP_07814165.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
KZN V2475]
gi|339630565|ref|YP_004722207.1| GntR family transcriptional regulator [Mycobacterium africanum
GM041182]
gi|340625521|ref|YP_004743973.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|54039959|sp|P67740.1|Y505_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator
Mb0505
gi|54042800|sp|P67739.1|Y494_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
Rv0494/MT0514
gi|13880022|gb|AAK44737.1| transcriptional regulator, GntR family [Mycobacterium tuberculosis
CDC1551]
gi|31617261|emb|CAD93368.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY)
[Mycobacterium bovis AF2122/97]
gi|38490193|emb|CAB00955.2| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY)
[Mycobacterium tuberculosis H37Rv]
gi|121492058|emb|CAL70521.1| Probable transcriptional regulatory protein (probably gntR-family)
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|134148971|gb|EBA41016.1| hypothetical transcriptional regulatory protein (probably gntR-family)
[Mycobacterium tuberculosis str. Haarlem]
gi|148504414|gb|ABQ72223.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148720221|gb|ABR04846.1| hypothetical transcriptional regulatory protein, gntR-family
[Mycobacterium tuberculosis F11]
gi|224771996|dbj|BAH24802.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253318927|gb|ACT23530.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 1435]
gi|289414797|gb|EFD12037.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T46]
gi|289418997|gb|EFD16198.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
CPHL_A]
gi|289437378|gb|EFD19871.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 605]
gi|289537513|gb|EFD42091.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
K85]
gi|289684730|gb|EFD52218.1| transcriptional regulatory protein, gntR-family [Mycobacterium
tuberculosis 02_1987]
gi|289689574|gb|EFD57003.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T92]
gi|289693114|gb|EFD60543.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
EAS054]
gi|289708120|gb|EFD72136.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
gi|298493767|gb|EFI29061.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|326902322|gb|EGE49255.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
W-148]
gi|328457210|gb|AEB02633.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 4207]
gi|339329921|emb|CCC25571.1| putative transcriptional regulatory protein (probably GNTR-family)
[Mycobacterium africanum GM041182]
gi|340003711|emb|CCC42835.1| putative transcriptional regulatory protein (probably GNTR-family)
[Mycobacterium canettii CIPT 140010059]
gi|341600427|emb|CCC63097.1| probable transcriptional regulatory protein (probably gntR-family)
[Mycobacterium bovis BCG str. Moreau RDJ]
gi|344218313|gb|AEM98943.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
CTRI-2]
Length=242
Score = 478 bits (1229), Expect = 5e-133, Method: Compositional matrix adjust.
Identities = 241/242 (99%), Positives = 242/242 (100%), Gaps = 0/242 (0%)
Query 1 LVEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR 60
+VEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR
Sbjct 1 MVEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR 60
Query 61 QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI 120
QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI
Sbjct 61 QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI 120
Query 121 GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE 180
GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE
Sbjct 121 GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE 180
Query 181 HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD 240
HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD
Sbjct 181 HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD 240
Query 241 RA 242
RA
Sbjct 241 RA 242
>gi|254230842|ref|ZP_04924169.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C]
gi|308231564|ref|ZP_07412931.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu001]
gi|308369408|ref|ZP_07417681.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu002]
26 more sequence titles
gi|308370425|ref|ZP_07421453.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu003]
gi|308371684|ref|ZP_07425823.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu004]
gi|308372907|ref|ZP_07430354.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu005]
gi|308374018|ref|ZP_07434540.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu006]
gi|308375172|ref|ZP_07442974.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu007]
gi|308376414|ref|ZP_07438763.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu008]
gi|308377437|ref|ZP_07479165.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu009]
gi|308378650|ref|ZP_07483359.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu010]
gi|308379792|ref|ZP_07487592.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu011]
gi|308395580|ref|ZP_07492095.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu012]
gi|124599901|gb|EAY58911.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C]
gi|308216811|gb|EFO76210.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu001]
gi|308327673|gb|EFP16524.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu002]
gi|308332024|gb|EFP20875.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu003]
gi|308335811|gb|EFP24662.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu004]
gi|308339416|gb|EFP28267.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu005]
gi|308343292|gb|EFP32143.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu006]
gi|308347187|gb|EFP36038.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu007]
gi|308351129|gb|EFP39980.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu008]
gi|308355759|gb|EFP44610.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu009]
gi|308359818|gb|EFP48669.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu010]
gi|308363621|gb|EFP52472.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu011]
gi|308367275|gb|EFP56126.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu012]
gi|323721170|gb|EGB30232.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|339293543|gb|AEJ45654.1| hypothetical protein CCDC5079_0464 [Mycobacterium tuberculosis
CCDC5079]
gi|339297184|gb|AEJ49294.1| hypothetical protein CCDC5180_0457 [Mycobacterium tuberculosis
CCDC5180]
Length=238
Score = 471 bits (1211), Expect = 6e-131, Method: Compositional matrix adjust.
Identities = 238/238 (100%), Positives = 238/238 (100%), Gaps = 0/238 (0%)
Query 5 MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA 64
MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA
Sbjct 1 MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA 60
Query 65 RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA 124
RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA
Sbjct 61 RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA 120
Query 125 AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 184
AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG
Sbjct 121 AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 180
Query 185 GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA 242
GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA
Sbjct 181 GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA 238
>gi|289568416|ref|ZP_06448643.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T17]
gi|289542170|gb|EFD45818.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T17]
Length=224
Score = 438 bits (1127), Expect = 3e-121, Method: Compositional matrix adjust.
Identities = 223/224 (99%), Positives = 224/224 (100%), Gaps = 0/224 (0%)
Query 19 VDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS 78
+DERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS
Sbjct 1 MDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS 60
Query 79 GSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCA 138
GSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCA
Sbjct 61 GSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCA 120
Query 139 ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYDDAD 198
ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYDDAD
Sbjct 121 ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYDDAD 180
Query 199 PVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA 242
PVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA
Sbjct 181 PVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA 224
>gi|183980844|ref|YP_001849135.1| GntR family transcriptional regulator [Mycobacterium marinum
M]
gi|183174170|gb|ACC39280.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium
marinum M]
Length=245
Score = 379 bits (974), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 197/235 (84%), Positives = 210/235 (90%), Gaps = 0/235 (0%)
Query 5 MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA 64
MNQSS+ QPPDRQRVDE+IAT+IADAILDGVFPPGS LPPER+LAE+LGVNRTSLRQGLA
Sbjct 1 MNQSSILQPPDRQRVDEQIATSIADAILDGVFPPGSALPPERELAEQLGVNRTSLRQGLA 60
Query 65 RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA 124
RLQQMGLIE R GSG+VVRDP+ LTHPAVVEALVRKLGPDFLVE+LEIRAALGPLIGRLA
Sbjct 61 RLQQMGLIETRQGSGNVVRDPQSLTHPAVVEALVRKLGPDFLVEVLEIRAALGPLIGRLA 120
Query 125 AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 184
A R++ EDAEAL AAL V ADTA ARQAADLAYFRVLIH TRNRALGLLYRWVE AFG
Sbjct 121 AERNSSEDAEALRAALAEVADADTAPARQAADLAYFRVLIHGTRNRALGLLYRWVEQAFG 180
Query 185 GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYR 239
GREH LTGAY+DADPV+ DL AIN AVLAGDP AAA VE YLNASALRM+ YR
Sbjct 181 GREHELTGAYEDADPVIADLTAINDAVLAGDPETAAAAVEGYLNASALRMIMCYR 235
>gi|118619656|ref|YP_907988.1| GntR family transcriptional regulator [Mycobacterium ulcerans
Agy99]
gi|118571766|gb|ABL06517.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium
ulcerans Agy99]
Length=245
Score = 379 bits (973), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 197/235 (84%), Positives = 210/235 (90%), Gaps = 0/235 (0%)
Query 5 MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA 64
MNQSS+ QPPDRQRVDE+IAT+IADAILDGVFPPGS LPPER+LAE+LGVNRTSLRQGLA
Sbjct 1 MNQSSILQPPDRQRVDEQIATSIADAILDGVFPPGSALPPERELAEQLGVNRTSLRQGLA 60
Query 65 RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA 124
RLQQMGLIE R GSG+VVRDP+ LTHPAVVEALVRKLGPDFLVE+LEIRAALGPLIGRLA
Sbjct 61 RLQQMGLIETRQGSGNVVRDPQSLTHPAVVEALVRKLGPDFLVEVLEIRAALGPLIGRLA 120
Query 125 AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 184
A R++ EDAEAL AAL V ADTA ARQAADLAYFRVLIH TRNRALGLLYRWVE AFG
Sbjct 121 AERNSSEDAEALRAALAEVADADTAPARQAADLAYFRVLIHGTRNRALGLLYRWVEQAFG 180
Query 185 GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYR 239
GREH LTGAY+DADPV+ DL AIN AVLAGDP AAA VE YLNASALRM+ YR
Sbjct 181 GREHDLTGAYEDADPVIADLTAINDAVLAGDPETAAAAVEGYLNASALRMIMCYR 235
>gi|240171897|ref|ZP_04750556.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=244
Score = 373 bits (957), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 201/240 (84%), Positives = 213/240 (89%), Gaps = 0/240 (0%)
Query 1 LVEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR 60
+VEPMNQSS FQPPDR RVDE+IA +IADAILDGVFPPGSTLPPERDLA + GVNRTSLR
Sbjct 1 MVEPMNQSSAFQPPDRLRVDEQIAASIADAILDGVFPPGSTLPPERDLAAQFGVNRTSLR 60
Query 61 QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI 120
QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFL ELLEIRAALGPLI
Sbjct 61 QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLAELLEIRAALGPLI 120
Query 121 GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE 180
GRLAA R TP+DA AL AL ++ AD AAARQAADLAYFRVLIHSTRNRALGLLYRWVE
Sbjct 121 GRLAAQRHTPDDAHALRDALAALRDADGAAARQAADLAYFRVLIHSTRNRALGLLYRWVE 180
Query 181 HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD 240
HAFGGREH LTGAY+DA+PVL DLRAI AVL DP AA A VEAYL ASALRM+ +Y +
Sbjct 181 HAFGGREHELTGAYNDAEPVLADLRAITKAVLECDPVAAGAAVEAYLRASALRMIVAYTE 240
>gi|296168149|ref|ZP_06850170.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896827|gb|EFG76456.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=240
Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/234 (79%), Positives = 198/234 (85%), Gaps = 0/234 (0%)
Query 5 MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA 64
MNQSS +P DRQRVDE+IA +IADAILDG FPPGS LPPER+LAE+LGVNRTSLRQGLA
Sbjct 1 MNQSSPLRPLDRQRVDEQIAASIADAILDGAFPPGSALPPERELAEQLGVNRTSLRQGLA 60
Query 65 RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA 124
RLQQMGLIE RHGSG+VV DP+ LTHPAVVEALVRKLGP+FLVEL EIRAALGPLIGR A
Sbjct 61 RLQQMGLIEARHGSGNVVADPQALTHPAVVEALVRKLGPEFLVELFEIRAALGPLIGRSA 120
Query 125 AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 184
A R PEDA AL AAL V++AD+ AARQAADLAYFRVLIH + NRAL LLYRWVEHAFG
Sbjct 121 ARRGAPEDAGALRAALAAVREADSPAARQAADLAYFRVLIHHSGNRALALLYRWVEHAFG 180
Query 185 GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
GREH LT +YDDA PV+ L AI AVLAGD AAAAA VE YL ASA RM+ SY
Sbjct 181 GREHELTASYDDAAPVVAGLTAITDAVLAGDEAAAAAAVEEYLRASAQRMILSY 234
>gi|289756570|ref|ZP_06515948.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
T85]
gi|289712134|gb|EFD76146.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
T85]
Length=120
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/119 (95%), Positives = 115/119 (97%), Gaps = 0/119 (0%)
Query 124 AAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF 183
+A RSTPEDA A C ALEV+QQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF
Sbjct 2 SAVRSTPEDAVAECTALEVMQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF 61
Query 184 GGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA 242
GGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA
Sbjct 62 GGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA 120
>gi|29899145|gb|AAP03112.1| putative transcriptional regulator [Streptomyces griseochromogenes]
Length=239
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/222 (37%), Positives = 112/222 (51%), Gaps = 1/222 (0%)
Query 16 RQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVR 75
R+ + + + + + + IL G P GS LPPER LA+ GV RT+L+ RL Q GL+E R
Sbjct 17 RETIVDVLESRLREDILTGRHPAGSYLPPERTLADGYGVTRTTLKHAFGRLMQAGLLETR 76
Query 76 HGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEA 135
HG G+ VRD L ++ LVR PD++ E+ E+R ++G LI AAAR T
Sbjct 77 HGVGTRVRDYLRLGGADLLPMLVRH-SPDWIGEVFEVRHSIGALIAERAAARGTARQRAE 135
Query 136 LCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD 195
L L V A A Q AD+ R L +T NR LL + +A+ AL G +
Sbjct 136 LRTLLAAVADAGDTDAVQLADIEVHRALARATGNRVYVLLTNTLFNAYLPVRAALQGPFT 195
Query 196 DADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKS 237
DA L + AV AGD A E YL A+ M++
Sbjct 196 DAHVAHGRLAPVVEAVAAGDAPGARRAAEQYLTATERIMLEG 237
>gi|467045|gb|AAA17229.1| B2168_C2_205 [Mycobacterium leprae]
Length=105
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/96 (57%), Positives = 64/96 (67%), Gaps = 0/96 (0%)
Query 98 VRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCAALEVVQQADTAAARQAADL 157
+RKLG +FL+EL EIRAALG LIG L + RST +D EALC AL + A+TA ARQ A L
Sbjct 1 MRKLGSEFLIELFEIRAALGSLIGCLVSDRSTFDDVEALCVALAGMCGAETALARQVAYL 60
Query 158 AYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGA 193
AYFR + G WVEH FGGRE+ LTG+
Sbjct 61 AYFRSSSKAFATVCWGCCIVWVEHTFGGREYELTGS 96
>gi|126740909|ref|ZP_01756593.1| Pyruvate dehydrogenase complex repressor [Roseobacter sp. SK209-2-6]
gi|126718009|gb|EBA14727.1| Pyruvate dehydrogenase complex repressor [Roseobacter sp. SK209-2-6]
Length=257
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/231 (32%), Positives = 108/231 (47%), Gaps = 8/231 (3%)
Query 5 MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA 64
MN +S F P + + E + I I+DG+ G LP ER+LAE LGV+R LR+ L
Sbjct 1 MNDTSPFDPVGHESIAEAVVEQIETMIVDGILKEGRKLPSERELAEALGVSRPKLREALQ 60
Query 65 RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA 124
L+ GLI+VRHG GS + G + +L + G F + LE R RLA
Sbjct 61 TLEDRGLIKVRHGEGSFIASLTGRAMSPALLSLYARYGRAF-YDYLEYRREQEAFASRLA 119
Query 125 AARSTPEDAEALCAALEVVQQA---DTAAARQAADLAYFRVLIHSTRNRAL----GLLYR 177
A R+T D E L + +Q+A D A A Q ADL ++ +++N L +Y
Sbjct 120 AERATQSDKERLIDIIGEMQRAWEEDDAEASQEADLKLHVAVVDASQNTTLIHMMASVYD 179
Query 178 WVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN 228
L + +L + I +++ GDPA A A ++++
Sbjct 180 LTRQGVFYNRQFLRTMDGTGEKLLEQHKEIAQSIIDGDPARAEAAARSHMD 230
>gi|262199917|ref|YP_003271126.1| regulatory protein GntR HTH [Haliangium ochraceum DSM 14365]
gi|262083264|gb|ACY19233.1| regulatory protein GntR HTH [Haliangium ochraceum DSM 14365]
Length=261
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/229 (33%), Positives = 116/229 (51%), Gaps = 3/229 (1%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+ +P ++QRV E I + + IL G + PG+ LPPER+L++RLGVNR SLR+ L +L+ +
Sbjct 1 MLRPVEKQRVAEEIVEQLRELILTGRYEPGAKLPPERELSKRLGVNRASLREALKKLEHL 60
Query 70 GLIEVRHGSGSVVRD---PEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAA 126
GL+ +R G G+ V++ G+ + + L PD + + LE R G + RLAA
Sbjct 61 GLVRIRQGDGTRVQNFMETGGIELVSYLLPLAPTSHPDLIRDTLEFRRIFGREVARLAAQ 120
Query 127 RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR 186
R+ ED + A E + + + D ++ L T N+ +GLL V A
Sbjct 121 RARAEDIARVRVAAERAEGDVSKSELFDIDFEFYVALTACTGNQVMGLLINTVRDAVRSY 180
Query 187 EHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMV 235
LT A+ V RA+ A+ A D AA + YL A R++
Sbjct 181 TPVLTQLTTPAEAVRAHHRALLAAIEAHDVERAAHIADEYLGRGAERVL 229
>gi|320010201|gb|ADW05051.1| GntR domain protein [Streptomyces flavogriseus ATCC 33331]
Length=246
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/242 (34%), Positives = 123/242 (51%), Gaps = 18/242 (7%)
Query 8 SSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQ 67
+S+ +P R+ +A + D + +G PG+ LP ER LA+ LGV R+S+R L+ L
Sbjct 11 TSLLRPVVRESSVSEVAKRLLDHLSEGNLKPGTRLPAERQLADALGVARSSVRGALSALD 70
Query 68 QMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAAR 127
+G+IE+R GSGS VR+ P + + LG +L+E+R + + RLAA R
Sbjct 71 VLGIIEIRPGSGSYVREGTSEFLPRAINWGL-MLGQRRTQDLVEVRTFMEGMSARLAADR 129
Query 128 STPEDAEALCAALEVVQQADT-AAARQAADLAYFRVLIHSTRNRALG--------LLYRW 178
++ ED E L A LE +++A T A AD+A+ H RN L LL W
Sbjct 130 ASEEDVERLEAHLERMREAGTDVKAFIDADIAFHLETAHIARNTVLSDILHSIRALLQVW 189
Query 179 VEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+E A G E ++G + VL +R AGDP A A + ++ ++ R+ S
Sbjct 190 MERA-GDIEGTVSGTLHEHGAVLDAIR-------AGDPEGADAAMAEHMRLASDRLRLSL 241
Query 239 RD 240
R+
Sbjct 242 RE 243
>gi|159044518|ref|YP_001533312.1| putative pyruvate dehydrogenase complex repressor [Dinoroseobacter
shibae DFL 12]
gi|157912278|gb|ABV93711.1| putative pyruvate dehydrogenase complex repressor [Dinoroseobacter
shibae DFL 12]
Length=260
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/172 (38%), Positives = 90/172 (53%), Gaps = 10/172 (5%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+FQP D V + + T I D I+ V G+ LP ERDLAE LGV+R LR+ L RL+
Sbjct 7 IFQPIDHDSVADAVVTQIEDLIVSRVLRQGARLPAERDLAEALGVSRPKLREALKRLEDE 66
Query 70 GLIEVRHGSGSVVRDPEGLTHPAVVEALV---RKLGPDFLVELLEIRAALGPLIGRLAAA 126
GL+E R G GS V LT+ A+ AL+ + G F E LE R RLAA
Sbjct 67 GLLETRKGEGSFVAQ---LTNTAMSPALLDLFSRHGEAFF-EYLEYRKEQEAFAARLAAE 122
Query 127 RSTPEDAEALC---AALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLL 175
R T DA+A+ A + + Q D A A +D+A+ ++ ++ N L +
Sbjct 123 RHTDFDAQAISQHLANMRIAQDRDDARASMESDIAFHSAIVDASHNTMLSHM 174
>gi|92113862|ref|YP_573790.1| GntR family transcriptional regulator [Chromohalobacter salexigens
DSM 3043]
gi|91796952|gb|ABE59091.1| transcriptional regulator, GntR family [Chromohalobacter salexigens
DSM 3043]
Length=251
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/242 (34%), Positives = 119/242 (50%), Gaps = 38/242 (15%)
Query 17 QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH 76
QR+ +IA + I DG FPPGS LPPERDLA++LGV+R S+R+ L L+ +G++EVR
Sbjct 9 QRLYRQIADQLQQLIRDGEFPPGSLLPPERDLAQQLGVSRASVREALIALEVVGIVEVRV 68
Query 77 GSGSVVRDPEGLTHPAVVEALVRK----LGPDFLVE-------------LLEIRAALGPL 119
G G +V++ + + +V++A RK L P+F E LL+ R L P
Sbjct 69 GHGVLVKEVDAMPPGSVMQAAARKEPWALDPEFASEIELNLDEEIPPFSLLQARRYLEPE 128
Query 120 IGRLAAARSTPEDAEALCAALE-VVQQADTAAARQAAD-LAYFRV-----------LIHS 166
LAA +T ED A+ AALE + + A D L + R+ LI
Sbjct 129 NAALAAMNATDEDLSAIRAALERNIYDNNHGGGNLAGDRLLHIRIAEASGNAAYALLIKH 188
Query 167 TRNRALGLLYRWVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAY 226
G+++R ++ F TG + D + A+ A DPAAA +E +
Sbjct 189 LLGHQYGVMFRRLQELF-----METGMPQRSQ---EDHERLVAAIEARDPAAARQAMEVH 240
Query 227 LN 228
L+
Sbjct 241 LD 242
>gi|345008886|ref|YP_004811240.1| GntR domain-containing protein [Streptomyces violaceusniger Tu
4113]
gi|344035235|gb|AEM80960.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
Length=260
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/227 (36%), Positives = 116/227 (52%), Gaps = 19/227 (8%)
Query 23 IATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGSVV 82
+A + IL G PPGS +PPER+LAE LGV+R S+R+ L L GL+ R GSG+VV
Sbjct 17 LAVGLERLILSGELPPGSRVPPERELAESLGVSRGSVREALRALASRGLVARRPGSGTVV 76
Query 83 RDPEGLTHPAVVEALVRKLGPDFLVELL---EIRAALGPLIGRLAAARSTPEDAEALCAA 139
DP ++ + G D ELL E+RA + P + AA R+TP D L A
Sbjct 77 LDPGATPRGDILAS-----GLDATAELLQVMEVRACIEPSVTARAARRATPADIVQLHAL 131
Query 140 LEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF-----GGREHALTGAY 194
L+ +++ T D + R + TRN LL R ++ + G RE +L+ A
Sbjct 132 LDAMRREPTRREFTDLDRTFHRAIAQYTRN---PLLLRLLDRVYEIGEPGRRETSLSAAR 188
Query 195 DDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDR 241
A + + +AI A+ A DP AA A E +L+ S L ++ R R
Sbjct 189 RRA--TIEEHQAILRAIEARDPEAARAASETHLD-SVLHRIEEQRRR 232
>gi|114321432|ref|YP_743115.1| GntR family transcriptional regulator [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227826|gb|ABI57625.1| transcriptional regulator, GntR family [Alkalilimnicola ehrlichii
MLHE-1]
Length=255
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/226 (32%), Positives = 106/226 (47%), Gaps = 23/226 (10%)
Query 18 RVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHG 77
R+ + I I + IL+GV PG LP ER+LA+ L V+R SLR+ L +L+ GL++ R G
Sbjct 10 RLSDSIIQQIEELILNGVLKPGDRLPAERELAQELDVSRPSLREALLKLEARGLLKARPG 69
Query 78 SGSVVRDPEGLTHPAVVEALVRKLG--PDFLVELLEIRAALGPLIGRLAAARSTPEDAEA 135
G+ V D + P V E LV L P+ ++LE+R AL + AA R+T D E
Sbjct 70 GGTFVAD---IAAPTVTEPLVELLKDRPEATFQILELRHALEEMAAWYAAERATEADREI 126
Query 136 LCAALEVVQ-------------QADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHA 182
+ E + +AD AD ++ LIH R L+ + ++
Sbjct 127 IRRRFEALMELYDTNDDPDLDAEADAEFHLAIADASHNVALIHVVRG-----LFSLLRNS 181
Query 183 FGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN 228
H L +D P+ RAI A++AGD A A +L
Sbjct 182 ITRSLHQLKQRNEDYAPLREQHRAIYEAIMAGDAARAKEAANVHLT 227
>gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
gi|300076305|gb|ADJ65704.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
Length=233
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/235 (33%), Positives = 124/235 (53%), Gaps = 17/235 (7%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+FQ Q + + +A + + I G FP GS LP E LA++ GV+RT +R+ +ARL+
Sbjct 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60
Query 70 GLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARST 129
G++E R GSG V + G+ P ++ P+ +++++E+R A+ + AA R +
Sbjct 61 GVVEPRQGSGVFVTEQAGI-KPLRID-YTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRS 118
Query 130 PEDAEALCAALEVVQQADTAAARQ--AADLAYFRVLIHSTRN----RALGLLYRWVEHAF 183
ED +A+ AAL + D AA AAD+A+ R L +TRN + L L +++E A
Sbjct 119 AEDLQAIEAALAQI-GVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAAT 177
Query 184 G---GREHALTGAYDD-ADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRM 234
G E Y+D + V + AI A+ AGD AA + ++ +A R+
Sbjct 178 AVTRGNE----ARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228
>gi|291295830|ref|YP_003507228.1| GntR domain-containing protein [Meiothermus ruber DSM 1279]
gi|290470789|gb|ADD28208.1| GntR domain protein [Meiothermus ruber DSM 1279]
Length=227
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/217 (33%), Positives = 102/217 (48%), Gaps = 14/217 (6%)
Query 18 RVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHG 77
RV E++A + + DGV+ PG LP ERDLA R GV+R+S+R+ L L+ G +E+R G
Sbjct 6 RVSEKLAKDLEQLLQDGVWRPGDQLPGERDLASRFGVSRSSVREALRILELNGWVEIRQG 65
Query 78 SGSVVRDPEGLTHPAVVEALVRKL-----GPDFLVELLEIRAALGPLIGRLAAARSTPED 132
G+ V P E+ R+L DF++EL E+R L P + LAA RS P+
Sbjct 66 DGTRVASPS--------ESFGRRLRSRLHQEDFILELFEVRRILEPAVAALAAERSHPQG 117
Query 133 AEALCAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALT 191
L L Q A R D+ + + L +RN L + +E T
Sbjct 118 VARLEELLAQQQAAKEDLYRFVELDMFFHKTLADMSRNAVLSEIVSLLEVELRQIRLVST 177
Query 192 GAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN 228
L++ I A+ A DP AA + A+L+
Sbjct 178 AKRYRPQVTLSEHLRILEAIRASDPEAARQAMLAHLS 214
>gi|120403925|ref|YP_953754.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1]
gi|119956743|gb|ABM13748.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
PYR-1]
Length=240
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/227 (35%), Positives = 112/227 (50%), Gaps = 33/227 (14%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
+P +R+ V E + I +L G PG TLP ER LAE LGV+R ++R+ L RL G
Sbjct 3 LRPVNRRSVPEDVFDQIISDVLSGEMRPGETLPSERRLAEVLGVSRPAIREALKRLAAAG 62
Query 71 LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVEL------LEIRAALGPLIGRLA 124
LIEVR G + VRD A ++ L R L D ++L LE R GP + LA
Sbjct 63 LIEVRQGDATTVRD---FRRTAGLDLLPRLLIRDGDLDLAVVRSILETRLHNGPKVAELA 119
Query 125 AARSTPEDAEALCAALE-VVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF 183
A R PE ++ L A+ + +AD AA++ A L ++ ++ + A L++
Sbjct 120 AQRRGPELSDELNTAMRALADEADPVAAQRHA-LDFWDHIVDGADSIAFRLMF------- 171
Query 184 GGREHALTGAYDDADPVLTDL-----------RAINGAVLAGDPAAA 219
+ L Y+ A P L + RA+ AVLAGDPAAA
Sbjct 172 ----NTLRATYEPALPALATMMAAEVGRVDAYRAVAEAVLAGDPAAA 214
>gi|226941757|ref|YP_002796831.1| PdhR [Laribacter hongkongensis HLHK9]
gi|226716684|gb|ACO75822.1| PdhR [Laribacter hongkongensis HLHK9]
Length=257
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/241 (32%), Positives = 112/241 (47%), Gaps = 10/241 (4%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+QP R+ + I + ILDGV PG LPPER L+E+LGV+R SLR+ + ++
Sbjct 2 TYQPVRVPRLADAIVKELEAIILDGVLKPGDRLPPERQLSEQLGVSRASLREAIKQMAAR 61
Query 70 GLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARST 129
GL+E R G G+ V + T + ++ + P+ ++LE R + + LAA R+T
Sbjct 62 GLLESRQGGGTFVTNRLDRTFAGPWQEMLAQ-HPNLREDVLEFRRMMEGQVAALAAVRAT 120
Query 130 PEDAEALCA---ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR 186
D L LE Q D A + AD+A+ + + N L L +
Sbjct 121 EADRARLVRLYDELESACQGDDLARQSRADVAFHLGIADAAHNAMLAHLMAGLLDMLASN 180
Query 187 EHA-LTGAYDDADPV----LTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDR 241
H + + A PV L RAI AVLAG P A E +++ + S+RD
Sbjct 181 IHENVANLFHHAQPVAGQLLAQHRAIQEAVLAGRPDEARQAAEGHIH-FIHSTLTSWRDE 239
Query 242 A 242
A
Sbjct 240 A 240
>gi|108799693|ref|YP_639890.1| GntR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119868803|ref|YP_938755.1| GntR family transcriptional regulator [Mycobacterium sp. KMS]
gi|108770112|gb|ABG08834.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS]
gi|119694892|gb|ABL91965.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS]
Length=239
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/225 (34%), Positives = 109/225 (49%), Gaps = 27/225 (12%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
QP +R+ V E + I +L G PG TLP ER LAE LGV+R ++R+ L RL G
Sbjct 3 LQPVNRRSVPEDVFDQIVTEVLSGQMQPGQTLPSERRLAEVLGVSRPAIREALKRLAGAG 62
Query 71 LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGP-DFLV--ELLEIRAALGPLIGRLAAAR 127
LIEVR G + VRD ++ L+ + G D V +LE R GP + LAA R
Sbjct 63 LIEVRQGDATTVRDFRRTAGLDLLPRLLIRGGELDLTVVRSILETRLHNGPKVAELAAER 122
Query 128 STPEDAEALCAALEVVQ-QADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR 186
P AE L ++ ++ + D AA+Q A L ++ ++ + A L+Y
Sbjct 123 GGPGLAERLDETVDALEAETDPVAAQQLA-LTFWDHVVDGADSIAFRLMY---------- 171
Query 187 EHALTGAYDDADPVLTDL-----------RAINGAVLAGDPAAAA 220
+ L Y+ A P L + RA+ A++A DPA AA
Sbjct 172 -NTLRATYEPALPALATMMAEEVGRPDAYRAVTAAIVARDPAGAA 215
>gi|327440188|dbj|BAK16553.1| transcriptional regulator [Solibacillus silvestris StLB046]
Length=233
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/218 (30%), Positives = 104/218 (48%), Gaps = 6/218 (2%)
Query 15 DRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEV 74
++Q+V E I I I G+ G LPPER+LA + GV+RTS+R+ L L+ +E+
Sbjct 5 NKQKVYEIIIQKIQTEITAGILEAGEKLPPERELAVKYGVSRTSIREALRLLELSDFVEI 64
Query 75 RHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAE 134
R G G+ ++ E T + ++ K L E+LE+R L LAA R+T +D E
Sbjct 65 RPGDGTFIKTNEQQTIQQQLTSVALKTDQTTLYEMLELRLILESQCAALAALRATGQDIE 124
Query 135 ALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALG-LLYRWVEHAFG----GREHA 189
+ LE ++ D ADL + + + N L L+ + H R+H
Sbjct 125 KIARTLEAMKNTDDEEIGIQADLDFHMAIAAAANNSVLAQLISSFASHMRSTIEVTRKHR 184
Query 190 LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYL 227
L+ + A L + RAI A+ G+ A +E ++
Sbjct 185 LSSKENFA-RTLEEHRAIFIAISRGESDRAKVLMEDHI 221
>gi|163738208|ref|ZP_02145624.1| GntR-like protein [Phaeobacter gallaeciensis BS107]
gi|163743802|ref|ZP_02151175.1| pyruvate dehydrogenase complex repressor [Phaeobacter gallaeciensis
2.10]
gi|161382951|gb|EDQ07347.1| pyruvate dehydrogenase complex repressor [Phaeobacter gallaeciensis
2.10]
gi|161388824|gb|EDQ13177.1| GntR-like protein [Phaeobacter gallaeciensis BS107]
Length=256
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/227 (33%), Positives = 109/227 (49%), Gaps = 12/227 (5%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
FQ +++ + I IL G+ PG LP ER+LAERLGV+R SLR LA LQ G
Sbjct 3 FQKVQPEKLSASVVRQIEQFILRGILTPGERLPAERELAERLGVSRPSLRDALAELQDRG 62
Query 71 LIEVRHGSGSVVRDPEGLTH-PAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARST 129
L+ R G+G V D G PA+V+ + + + L R + L AA +
Sbjct 63 LLVSRAGAGVFVADVLGSAFSPALVQLFASH--DEAVFDYLSFRRDMEGLAAERAAKYGS 120
Query 130 PEDAEALCAALEVVQQA-DTAAARQAA--DLAYFRVLIHSTRNRALGLLYRWV-----EH 181
D E + E ++QA D A + +AA D + ++ ++ N + + R + E
Sbjct 121 DYDLEVIQTIFEKMEQAGDPATSEEAAALDAQFHSAIMDASHNVVMLHMMRSMFELLREG 180
Query 182 AFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN 228
F R + + D +L AIN A+ A DP+AA A VE +L+
Sbjct 181 VFYNRR-VMFQQHTTRDALLAQHSAINAALQARDPSAARAAVETHLD 226
>gi|307546140|ref|YP_003898619.1| GntR family transcriptional regulator [Halomonas elongata DSM
2581]
gi|307218164|emb|CBV43434.1| GntR domain protein [Halomonas elongata DSM 2581]
Length=251
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/141 (41%), Positives = 81/141 (58%), Gaps = 17/141 (12%)
Query 17 QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH 76
QR+ +IA + I DG FPPGS LPPERDLA++LGV+R S+R+ L L+ +G++EVR
Sbjct 9 QRLYRQIADQLQQLIRDGEFPPGSLLPPERDLAQQLGVSRASVREALIALEVVGIVEVRV 68
Query 77 GSGSVVRDPEGLTHPAVVEALVRK----LGPDFLVE-------------LLEIRAALGPL 119
G G +V++ + + +V+ A RK L P+F E LL+ R L P
Sbjct 69 GHGVLVKEVDAMPPGSVMRAAARKEPWALDPEFASEIELNLDEEIPPFSLLQARRYLEPE 128
Query 120 IGRLAAARSTPEDAEALCAAL 140
LAA ++ D EA+ AAL
Sbjct 129 NAALAAMNASDADLEAIRAAL 149
>gi|89895021|ref|YP_518508.1| hypothetical protein DSY2275 [Desulfitobacterium hafniense Y51]
gi|89334469|dbj|BAE84064.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=243
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/171 (34%), Positives = 90/171 (53%), Gaps = 6/171 (3%)
Query 5 MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA 64
M S +P +++ E I I ++ G PG LP ERDLA RL V+R S+R+ L+
Sbjct 1 MEGSMDLKPIKTKKIYEEIIEQIRVLVVKGDLKPGDRLPSERDLAVRLNVSRASVREALS 60
Query 65 RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEAL--VRKLGPDFLVELLEIRAALGPLIGR 122
L+ MGL+E+R G G+ ++ + +VV L V + D ++ELLE+R L
Sbjct 61 ALEMMGLLEIRSGEGTYIK---KINLDSVVTPLTWVLSMEKDTILELLEVRKMLEGQTVT 117
Query 123 LAAARSTPEDAEALCAALEVVQ-QADTAAARQAADLAYFRVLIHSTRNRAL 172
LAA R+T +D L AL+ + T + ADL + + +++N+ L
Sbjct 118 LAAKRATSDDLRELEGALKAMHDDVQTGQLGEEADLRFHYAVARASKNKIL 168
>gi|169630101|ref|YP_001703750.1| GntR family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169242068|emb|CAM63096.1| Putative transcriptional regulator, GntR family [Mycobacterium
abscessus]
Length=242
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/179 (34%), Positives = 96/179 (54%), Gaps = 7/179 (3%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
QP RQ + + I + +A +L G PG TLP ER LAE LGV+R ++R+ L RL++ G
Sbjct 3 LQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLERSG 62
Query 71 LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDF----LVELLEIRAALGPLIGRLAAA 126
LI++R G +V+RD V+ L+ G D L ++E RA +GP + RLAA
Sbjct 63 LIQIRQGGSTVIRDYRSDAGFDVLPLLL-AYGGDVDRRTLASVIEARAIIGPQVARLAAQ 121
Query 127 RS--TPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF 183
R+ TP A+ L A ++ D R L ++ ++I + + A L++ + ++
Sbjct 122 RAHQTPGVADRLRAMTSELEAEDDPLQRMWQALGFWELVIDTADSIAFRLVFNTMRDSY 180
>gi|111018059|ref|YP_701031.1| GntR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110817589|gb|ABG92873.1| transcriptional regulator, GntR family protein [Rhodococcus jostii
RHA1]
Length=247
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/177 (33%), Positives = 93/177 (53%), Gaps = 3/177 (1%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+F+P R+ + I +L G G LP ER LAE GV+R ++R+ + +L Q
Sbjct 4 MFEPIARKSASTEVFDQITARVLGGDLAAGDALPSERRLAEAFGVSRPAIREAIQKLAQA 63
Query 70 GLIEVRHGSGSVVRDPEGLTHPAVV-EALVRKLGPDFLV--ELLEIRAALGPLIGRLAAA 126
GL+EVR G + VRD P ++ + LVR PD+ V +LE R +G + RLAA
Sbjct 64 GLVEVRQGDATSVRDFRQHGGPELLSQLLVRDGVPDWAVVRSVLEARRMIGVQVARLAAG 123
Query 127 RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF 183
R+T E AL A++ + A+Q LA++ ++ + + A L++ + +A+
Sbjct 124 RATDESGAALRDAVDHLASDSDPVAQQVGALAFWERVVDTADSIAFRLIFNSLRNAY 180
>gi|290963031|ref|YP_003494213.1| GntR family transcriptional regulator [Streptomyces scabiei 87.22]
gi|260652557|emb|CBG75690.1| putative gntR-famly transcriptional regulator [Streptomyces scabiei
87.22]
Length=249
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/205 (37%), Positives = 104/205 (51%), Gaps = 14/205 (6%)
Query 31 ILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGSVVRDPEGLTH 90
I+ G +PPGS + P + LGV++T +R+ L L GL+E + G+ +R
Sbjct 21 IIRGDYPPGSVVDPVK-FETELGVSKTVVREALRVLASKGLLESKQKRGTTIRPRADWN- 78
Query 91 PAVVEALVRKLGPD-----FLVELLEIRAALGPLIGRLAAARSTPEDAEALCAALEVVQQ 145
+ L+R G FL +L E+RA + P RLAA R TP D +AL AL+ +
Sbjct 79 -LLDSDLLRWQGSSAPTDGFLEDLAEVRAIVEPAGARLAATRRTPADLDALRRALDAMAA 137
Query 146 ADT-AAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGA--YDDADPVLT 202
A T A A ADLA+ R L+ + N L + +E R+ + GA + D+ PV
Sbjct 138 AGTDAEAMVEADLAFHRALLEAAHNELLSRMEVVIEAGLRVRDRIVHGALHFSDSIPVHQ 197
Query 203 DLRAINGAVLAGDPAAAAATVEAYL 227
DL AV AGDP AA A VE+ L
Sbjct 198 DLLT---AVEAGDPDAAVAAVESLL 219
>gi|334342733|ref|YP_004555337.1| GntR domain-containing protein [Sphingobium chlorophenolicum
L-1]
gi|334103408|gb|AEG50831.1| GntR domain protein [Sphingobium chlorophenolicum L-1]
Length=244
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/170 (36%), Positives = 86/170 (51%), Gaps = 11/170 (6%)
Query 9 SVFQPPDR--QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARL 66
S +Q D + V E+IAT G++PPG LPPERDLA LGV R +LR+GL +L
Sbjct 12 SAWQAVDTLVREVKEKIAT--------GIWPPGYRLPPERDLAADLGVARNTLRRGLKQL 63
Query 67 QQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAA 126
+ G IE G GS V + +EAL+ + +++EIR L P LAA
Sbjct 64 EGEGHIERHVGRGSFVAEQRS-DRDLSIEALIARAIDASPADIIEIRVLLEPWAASLAAM 122
Query 127 RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLY 176
R++ +D + +E QQ +A D + +I ST NR L L+
Sbjct 123 RASAQDLVTIRECVEKCQQVTDLSAFAYWDAKFHEAIIASTGNRLLECLF 172
>gi|271963654|ref|YP_003337850.1| GntR family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270506829|gb|ACZ85107.1| GntR family transcriptional regulator [Streptosporangium roseum
DSM 43021]
Length=255
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/175 (36%), Positives = 92/175 (53%), Gaps = 7/175 (4%)
Query 7 QSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARL 66
QSSV P Q V +A + A+ G + PG LP ER+LA L V+R ++R+ + RL
Sbjct 11 QSSVLSPVKVQSVATEVADRLMTAVAIGDYLPGERLPGERELATILDVSRATVREAIGRL 70
Query 67 QQMGLIEVRHG--SGSVVRDPEGLTHPAVVEALVRKLGPDF--LVELLEIRAALGPLIGR 122
Q +G++E++ G G+ VR A A+ R L P + L +L ++R + L+ R
Sbjct 71 QAVGIVEIKRGRTGGAYVRTS---WTEATASAVRRTLLPRWPELEQLFDLRCLVEGLVAR 127
Query 123 LAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYR 177
AA R T ED A+ AL+ QA T QAAD A+ ++ +T N + L R
Sbjct 128 TAALRRTDEDLAAMRVALDGYAQARTLGQEQAADAAFHGAVLAATGNPKISALSR 182
>gi|340625616|ref|YP_004744068.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340003806|emb|CCC42932.1| putative transcriptional regulatory protein (GNTR-family) [Mycobacterium
canettii CIPT 140010059]
Length=240
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/240 (32%), Positives = 110/240 (46%), Gaps = 12/240 (5%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
QP R+ V E + IA +L G PPG LP ER LAE LGV+R ++R+ L RL G
Sbjct 3 LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG 62
Query 71 LIEVRHGSGSVVRDPEGLTHPAVVEALVR------KLGPDFLVELLEIRAALGPLIGRLA 124
L+EVR G + VRD A ++ L R +L + +LE R P + LA
Sbjct 63 LVEVRQGDVTTVRD---FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELA 119
Query 125 AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 184
A R+ PE AE L +L + + Q L ++ ++ S + L+Y A+
Sbjct 120 AERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYE 179
Query 185 GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYL---NASALRMVKSYRDR 241
ALT A +D R + A+ +GDP A + L N S + ++ S R
Sbjct 180 PTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLDSQASR 239
>gi|339000166|ref|ZP_08638785.1| GntR family transcriptional regulator [Halomonas sp. TD01]
gi|338762943|gb|EGP17956.1| GntR family transcriptional regulator [Halomonas sp. TD01]
Length=257
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/219 (32%), Positives = 105/219 (48%), Gaps = 22/219 (10%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+ P +QR+ + I + IL+G PG LPPER+LAER GV+R SLR+ + +L
Sbjct 2 TYPPLRQQRLADVITERLEAMILEGSLKPGQRLPPERELAERFGVSRPSLREAIQKLAAR 61
Query 70 GLIEVRHGSGSVVRDP--EGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAAR 127
GL+ R G G+ V + G T P ++E L R +F ++LLE R A+ + AA R
Sbjct 62 GLLTSRQGGGTFVNETLNSGYTDP-LLEMLSRH--NEFHLDLLEFRDAMEGISAYYAALR 118
Query 128 STPEDAEALCAALEVV----------QQA--DTAAARQAADLAYFRVLIHSTRNRALGLL 175
STP D L E + Q+A D A A+ A+ +L+H+ R +
Sbjct 119 STPADKAVLIQRFEELDGGFVGANPAQEAKLDAAFHLAIAEAAHNVLLLHTIRG-----I 173
Query 176 YRWVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAG 214
+ +E + L D ++ RA+ A+L G
Sbjct 174 FHLLEQSIVDNLAHLFAKPDSRSQLMKQHRALLDAILEG 212
>gi|344170578|emb|CCA82999.1| putative transcriptional regulatory dna-binding transcription
regulator protein [blood disease bacterium R229]
Length=255
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/229 (32%), Positives = 108/229 (48%), Gaps = 11/229 (4%)
Query 17 QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH 76
Q + E + I I G PG LP E +L LGV+RT +R+ ++RLQ LIE RH
Sbjct 15 QSLAETVVDHIGQRIASGSLRPGDKLPTESELMGALGVSRTVVREAISRLQAKALIETRH 74
Query 77 GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL 136
G GS V +P A ++ D L +LE+R AL LAA R+TPED L
Sbjct 75 GIGSFVLEPRA---EASIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL 130
Query 137 CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNR----ALGLLYRW--VEHAFGGREHA 189
+AL+ +Q AA DL + + H+TRN+ LG L + + +
Sbjct 131 RSALDTFEQDQANGNDSAASDLRFHLAIAHATRNQHFVAVLGQLGKTLILRSRIAPTQVG 190
Query 190 LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+ V + R+I A+ DP AA A + +L+ S R+ +++
Sbjct 191 YLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH 239
>gi|344174237|emb|CCA86020.1| putative transcriptional regulatory dna-binding transcription
regulator protein [Ralstonia syzygii R24]
Length=255
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/229 (32%), Positives = 108/229 (48%), Gaps = 11/229 (4%)
Query 17 QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH 76
Q + E + I I G PG LP E +L LGV+RT +R+ ++RLQ LIE RH
Sbjct 15 QSLAETVVDHIGQRIASGSLRPGDKLPTESELMGTLGVSRTVVREAISRLQAKALIETRH 74
Query 77 GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL 136
G GS V +P A ++ D L +LE+R AL LAA R+TPED L
Sbjct 75 GIGSFVLEPRA---EAALQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL 130
Query 137 CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNR----ALGLLYRWV--EHAFGGREHA 189
+AL+ +Q AA DL + + H+TRN+ LG L + + +
Sbjct 131 RSALDTFEQDQANGNDSAASDLRFHLAIAHATRNQHFVAVLGQLGKTLIPRSRIAPTQVG 190
Query 190 LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+ V + R+I A+ DP AA A + +L+ S R+ +++
Sbjct 191 YLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH 239
>gi|226303639|ref|YP_002763597.1| GntR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226182754|dbj|BAH30858.1| putative GntR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=240
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/223 (32%), Positives = 109/223 (49%), Gaps = 5/223 (2%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+FQP R + I+ +L G G LP ER LAE GV+R ++R+ + +L Q
Sbjct 1 MFQPVARTSASGAVFDQISVKVLAGELAAGEALPSERKLAEAFGVSRPAVREAIQKLAQA 60
Query 70 GLIEVRHGSGSVVRDPEGLTHPAVV-EALVRKLGPDFLV--ELLEIRAALGPLIGRLAAA 126
GL+EVR G + VRD P ++ + LVR PD V +LE R +GP I LAA
Sbjct 61 GLVEVRQGESTSVRDFRRQAGPELLPQLLVRDGVPDLTVVRSVLETRELMGPQIAVLAAR 120
Query 127 RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR 186
R + E A L A++ + + Q LA++ V++ S + A L++ + A+
Sbjct 121 RISAESARELDTAVDQLGATEDPVELQDRALAFWDVVVDSADSIAFRLIFNSLRAAYEPA 180
Query 187 EHALTGAYDDADPVLTDL-RAINGAVLAGDPAAAAATVEAYLN 228
AL A+ TDL R + A+ + D + A A+ L+
Sbjct 181 MTALASVM-VAEVGQTDLYRKLASAITSHDESTAEASAAQLLH 222
>gi|254471459|ref|ZP_05084861.1| pyruvate dehydrogenase complex repressor [Pseudovibrio sp. JE062]
gi|211959605|gb|EEA94803.1| pyruvate dehydrogenase complex repressor [Pseudovibrio sp. JE062]
Length=261
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/169 (34%), Positives = 86/169 (51%), Gaps = 8/169 (4%)
Query 9 SVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQ 68
++F+P D V + + I IL GV G+ LP ERD++ER+GV+R +R+ L RL+
Sbjct 6 NLFEPIDHDTVVDSVTEQIEGLILAGVLKEGTKLPSERDISERMGVSRPKVREALKRLED 65
Query 69 MGLIEVRHGSGSVVRDP--EGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAA 126
LI +RHG GS + P PA++ + R + LE R RLAA
Sbjct 66 SNLITIRHGEGSFIA-PLISAAMSPALINLISRNQTA--FYDYLEYRRVQEGFAARLAAE 122
Query 127 RSTPEDAEALCAALEVVQQADTAA---ARQAADLAYFRVLIHSTRNRAL 172
R+T D E L A LE ++ A A A + D+A+ ++ ++ N L
Sbjct 123 RATKLDLERLEAILENLRDAQARADDIASKKNDIAFHLAIVDASHNAML 171
>gi|15607726|ref|NP_215100.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
H37Rv]
gi|15839988|ref|NP_335025.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31791768|ref|NP_854261.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97]
80 more sequence titles
gi|121636504|ref|YP_976727.1| GntR family transcriptional regulator [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148660355|ref|YP_001281878.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148821788|ref|YP_001286542.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
F11]
gi|167969009|ref|ZP_02551286.1| hypothetical transcriptional regulatory protein, gntR-family
[Mycobacterium tuberculosis H37Ra]
gi|224988976|ref|YP_002643663.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253797520|ref|YP_003030521.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 1435]
gi|254230926|ref|ZP_04924253.1| hypothetical protein TBCG_00582 [Mycobacterium tuberculosis C]
gi|254363544|ref|ZP_04979590.1| hypothetical transcriptional regulatory protein (gntR-family)
[Mycobacterium tuberculosis str. Haarlem]
gi|254549541|ref|ZP_05139988.1| transcriptional regulator, gntR-family protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|289441975|ref|ZP_06431719.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T46]
gi|289446139|ref|ZP_06435883.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
CPHL_A]
gi|289552839|ref|ZP_06442049.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 605]
gi|289568519|ref|ZP_06448746.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T17]
gi|289573186|ref|ZP_06453413.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
K85]
gi|289744300|ref|ZP_06503678.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
02_1987]
gi|289749083|ref|ZP_06508461.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T92]
gi|289752625|ref|ZP_06512003.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
EAS054]
gi|289756665|ref|ZP_06516043.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
T85]
gi|289760705|ref|ZP_06520083.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|294996098|ref|ZP_06801789.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
210]
gi|297633080|ref|ZP_06950860.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
KZN 4207]
gi|297730058|ref|ZP_06959176.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
KZN R506]
gi|298524073|ref|ZP_07011482.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|306774690|ref|ZP_07413027.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu001]
gi|306781580|ref|ZP_07419917.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu002]
gi|306783228|ref|ZP_07421550.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu003]
gi|306787600|ref|ZP_07425922.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu004]
gi|306794364|ref|ZP_07432666.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu005]
gi|306796334|ref|ZP_07434636.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu006]
gi|306802194|ref|ZP_07438862.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu008]
gi|306806401|ref|ZP_07443069.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu007]
gi|306966601|ref|ZP_07479262.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu009]
gi|306970794|ref|ZP_07483455.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu010]
gi|307078517|ref|ZP_07487687.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu011]
gi|307083081|ref|ZP_07492194.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu012]
gi|313657385|ref|ZP_07814265.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
KZN V2475]
gi|339630654|ref|YP_004722296.1| GntR family transcriptional regulator [Mycobacterium africanum
GM041182]
gi|54039981|sp|P67742.1|Y601_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator
Mb0601
gi|54042801|sp|P67741.1|Y586_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
Rv0586/MT0615
gi|2222772|emb|CAB09952.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (GNTR-FAMILY) [Mycobacterium
tuberculosis H37Rv]
gi|13880130|gb|AAK44839.1| transcriptional regulator, GntR family [Mycobacterium tuberculosis
CDC1551]
gi|31617355|emb|CAD93463.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (GNTR-FAMILY) [Mycobacterium
bovis AF2122/97]
gi|121492151|emb|CAL70616.1| Probable transcriptional regulatory protein (gntR-family) [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124599985|gb|EAY58995.1| hypothetical protein TBCG_00582 [Mycobacterium tuberculosis C]
gi|134149058|gb|EBA41103.1| hypothetical transcriptional regulatory protein (gntR-family)
[Mycobacterium tuberculosis str. Haarlem]
gi|148504507|gb|ABQ72316.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148720315|gb|ABR04940.1| hypothetical transcriptional regulatory protein, gntR-family
[Mycobacterium tuberculosis F11]
gi|224772089|dbj|BAH24895.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253319023|gb|ACT23626.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 1435]
gi|289414894|gb|EFD12134.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T46]
gi|289419097|gb|EFD16298.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
CPHL_A]
gi|289437471|gb|EFD19964.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 605]
gi|289537617|gb|EFD42195.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
K85]
gi|289542273|gb|EFD45921.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T17]
gi|289684828|gb|EFD52316.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
02_1987]
gi|289689670|gb|EFD57099.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
T92]
gi|289693212|gb|EFD60641.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
EAS054]
gi|289708211|gb|EFD72227.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289712229|gb|EFD76241.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
T85]
gi|298493867|gb|EFI29161.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|308216589|gb|EFO75988.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu001]
gi|308325674|gb|EFP14525.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu002]
gi|308331896|gb|EFP20747.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu003]
gi|308335683|gb|EFP24534.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu004]
gi|308337262|gb|EFP26113.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu005]
gi|308343187|gb|EFP32038.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu006]
gi|308347054|gb|EFP35905.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu007]
gi|308350997|gb|EFP39848.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu008]
gi|308355631|gb|EFP44482.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu009]
gi|308359586|gb|EFP48437.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu010]
gi|308363514|gb|EFP52365.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu011]
gi|308367195|gb|EFP56046.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
SUMu012]
gi|323720938|gb|EGB30003.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|326902418|gb|EGE49351.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
W-148]
gi|328457303|gb|AEB02726.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
KZN 4207]
gi|339293629|gb|AEJ45740.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
CCDC5079]
gi|339297270|gb|AEJ49380.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
CCDC5180]
gi|339330010|emb|CCC25665.1| putative transcriptional regulatory protein (GNTR-family) [Mycobacterium
africanum GM041182]
gi|341600520|emb|CCC63190.1| probable transcriptional regulatory protein (gntR-family) [Mycobacterium
bovis BCG str. Moreau RDJ]
gi|344218407|gb|AEM99037.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
CTRI-2]
Length=240
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/224 (33%), Positives = 103/224 (46%), Gaps = 9/224 (4%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
QP R+ V E + IA +L G PPG LP ER LAE LGV+R ++R+ L RL G
Sbjct 3 LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG 62
Query 71 LIEVRHGSGSVVRDPEGLTHPAVVEALVR------KLGPDFLVELLEIRAALGPLIGRLA 124
L+EVR G + VRD A ++ L R +L + +LE R P + LA
Sbjct 63 LVEVRQGDVTTVRD---FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELA 119
Query 125 AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 184
A R+ PE AE L +L + + Q L ++ ++ S + L+Y A+
Sbjct 120 AERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYE 179
Query 185 GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN 228
ALT A +D R + A+ +GDP A + L
Sbjct 180 PTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLE 223
>gi|295695141|ref|YP_003588379.1| GntR domain-containing protein [Bacillus tusciae DSM 2912]
gi|295410743|gb|ADG05235.1| GntR domain protein [Bacillus tusciae DSM 2912]
Length=236
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/177 (33%), Positives = 92/177 (52%), Gaps = 5/177 (2%)
Query 10 VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM 69
+FQ ++V E I I + +++ G +P E LAE LGV+R+SLR+ L L +
Sbjct 1 MFQSVRHKKVFEEILDQIKEMLVNEQLSVGQRIPSEIRLAETLGVSRSSLREALRILDVL 60
Query 70 GLIEVRHGSGSVVR--DPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAAR 127
G+IE + G G+V+R DPE L + + LV G V+L E R A+ LAAAR
Sbjct 61 GIIEAKTGEGTVIRKADPENLKN---LMTLVAVSGGIDTVDLYEARCAIEVEAAMLAAAR 117
Query 128 STPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG 184
T ED + AL+ + + A A +D + R ++ +++N L ++ ++ G
Sbjct 118 HTAEDLRTMERALKEMDECRDAEASAHSDYLFHRAIVRASQNDVLKMMMSFISDLLG 174
>gi|17545797|ref|NP_519199.1| transcriptional regulatory DNA-binding transcription regulator
protein [Ralstonia solanacearum GMI1000]
gi|17428091|emb|CAD14780.1| probable transcriptional regulatory dna-binding transcription
regulator protein [Ralstonia solanacearum GMI1000]
Length=255
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/229 (32%), Positives = 106/229 (47%), Gaps = 11/229 (4%)
Query 17 QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH 76
Q + E + I I G PG LP E +L LGV+RT +R+ ++RLQ LIE RH
Sbjct 15 QSLAEAVVDHIGQRIASGSLRPGDKLPTESELMGMLGVSRTVVREAISRLQAKALIETRH 74
Query 77 GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL 136
G GS V +P T ++ D L +LE+R AL LAA R+TPED L
Sbjct 75 GIGSFVLEPRAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL 130
Query 137 CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH------A 189
AL+ +Q + + AA DL + + H+TRN+ + + R
Sbjct 131 RNALDAFEQDQASGSDSAASDLRFHLAIAHATRNQHFVAVLDQLGKTLIPRSRIAPTQVG 190
Query 190 LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+ V + R+I A+ DP AA A + +L+ S R+ +++
Sbjct 191 YLNTPESRATVSREHRSIYEAISRQDPEAARAAMRMHLSNSRERLRRAH 239
>gi|254254451|ref|ZP_04947768.1| regulatory protein GntR [Burkholderia dolosa AUO158]
gi|124899096|gb|EAY70939.1| regulatory protein GntR [Burkholderia dolosa AUO158]
Length=253
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/242 (32%), Positives = 112/242 (47%), Gaps = 26/242 (10%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
QP +R+ ++IA + + I G FPPGS LPPER+LAE+ GV+RTS+R+ L L+ G
Sbjct 3 IQPIQNRRLYQQIADKLGEMIESGTFPPGSYLPPERELAEQFGVSRTSVREALIALEVRG 62
Query 71 LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVE-------------------LLE 111
+ VR G G VR PE PAV RK+ P +VE LL+
Sbjct 63 RVSVRVGDGVKVRYPEAAAAPAVDRD--RKVAPFTIVEIDPELGIALDLDTEIPPFALLQ 120
Query 112 IRAALGPLIGRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLI-HSTRNR 170
R + P LAA + E + A Q+ + + + F + I ++ N
Sbjct 121 ARRLIEPEAASLAAKHGSDAQIEGIHDAFLRNQEDNRSGSLTHPGDRLFHIRIAEASDNP 180
Query 171 ALGLLYR-WVEHAFGGREHALTGAYDDAD-PVLTDL--RAINGAVLAGDPAAAAATVEAY 226
A L+ + + H + L Y D P ++L RAI A+ A DP AA + +
Sbjct 181 AYALMIKQLLAHKYDPMFQRLQSLYMPNDMPHRSELEHRAILDAIRARDPEAARRAMAGH 240
Query 227 LN 228
L+
Sbjct 241 LD 242
>gi|299067046|emb|CBJ38242.1| putative transcriptional regulatory dna-binding transcription
regulator protein [Ralstonia solanacearum CMR15]
Length=255
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/229 (32%), Positives = 106/229 (47%), Gaps = 11/229 (4%)
Query 17 QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH 76
Q + E + I I G PG LP E +L LGV+RT +R+ ++RLQ LIE RH
Sbjct 15 QSLAEAVVDHIGQRIASGSLRPGDKLPTESELMGTLGVSRTVVREAISRLQAKALIETRH 74
Query 77 GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL 136
G GS V +P T ++ D L +LE+R AL LAA R+TPED L
Sbjct 75 GIGSFVLEPRAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL 130
Query 137 CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH------A 189
+AL+ +Q + AA DL + + H+TRN+ + + R
Sbjct 131 RSALDAFEQDQASGNDSAASDLRFHLAIAHATRNQHFVAVLDQLGKTLIPRSRIAPTQVG 190
Query 190 LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+ V + R+I A+ DP AA A + +L+ S R+ +++
Sbjct 191 YLNTPESRATVSREHRSIYEAISRQDPEAARAAMRMHLSNSRERLRRAH 239
>gi|297157740|gb|ADI07452.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
Length=257
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/245 (32%), Positives = 118/245 (49%), Gaps = 26/245 (10%)
Query 6 NQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLAR 65
N +++ +P R+ +A + D + +G PG+ LP ER LAE L V R+S+R L+
Sbjct 9 NFTALLRPVVRESSVSEVAKRLLDHLSEGHLKPGTRLPAERQLAEALNVARSSVRGALSA 68
Query 66 LQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAA 125
L +G+IE+R GSGS VR P + + LG +L+E+R + + RLAA
Sbjct 69 LDVLGIIEIRPGSGSYVRAGTSEFLPRAINWGL-MLGQRRTHDLVEVRTFMEAMSARLAA 127
Query 126 ARSTPEDAEALCAALEVVQQ----------ADTAAARQAADLAYFRVL---IHSTRNRAL 172
R+ D E L A LE +++ AD A + A +A VL +HS R+
Sbjct 128 ERAEDTDVERLEAHLERMREAGGDVTAFIDADIAFHLETATIARNTVLSDILHSIRS--- 184
Query 173 GLLYRWVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASAL 232
LL W+E A G E + G + +L +R GDP AA + ++ ++
Sbjct 185 -LLQVWMERA-GDIEGTVAGTLKEHGAILQAIR-------DGDPQAAERAMAEHMQCASE 235
Query 233 RMVKS 237
R+ S
Sbjct 236 RLWSS 240
>gi|237816546|ref|ZP_04595538.1| GntR family transcriptional regulator [Brucella abortus str.
2308 A]
gi|237787359|gb|EEP61575.1| GntR family transcriptional regulator [Brucella abortus str.
2308 A]
Length=270
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/227 (33%), Positives = 106/227 (47%), Gaps = 22/227 (9%)
Query 21 ERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGS 80
E IA I ILDG F GS LP ER+L+ GV+R +R+ L++L+ GL+E R GSG
Sbjct 42 EEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGSGV 101
Query 81 VVRDPEGLT----HPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL 136
V D P VVE L +L+E+ A+ R+AA TPED + +
Sbjct 102 FVIDESNQKAFRIQPLVVEE------AQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQI 155
Query 137 CAALEVVQQADTA-AARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD 195
AL ++ A + R D A+ ++ +T N L + +E +G R H + A
Sbjct 156 KRALIGLEYAIISDKLRDEEDYAFHDAIVIATHNPHFIALCKHLE--YGAR-HVIRQART 212
Query 196 DADPVLTDL--------RAINGAVLAGDPAAAAATVEAYLNASALRM 234
+ L D+ +AI A+ GDP A E +L + RM
Sbjct 213 NTRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM 259
>gi|206590434|emb|CAQ37396.1| transcriptional regulatory dna-binding protein [Ralstonia solanacearum
MolK2]
Length=255
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/232 (32%), Positives = 108/232 (47%), Gaps = 19/232 (8%)
Query 22 RIATTIADAILD--------GVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIE 73
R A ++A+A++D G PG LP E +L LGV+RT +R+ ++RLQ LIE
Sbjct 12 RRAQSLAEAVVDHVRQRIASGALRPGDKLPTESELMAALGVSRTVVREAISRLQAKALIE 71
Query 74 VRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDA 133
RHG GS V +P T ++ D L +LE+R AL LAA R+TPED
Sbjct 72 TRHGIGSFVLEPPAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDL 127
Query 134 EALCAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH---- 188
AL AL+ +Q AA DL + + HSTRN + + R
Sbjct 128 AALRNALDTFEQDQAQGNDSAASDLRFHLAIAHSTRNPHFVAVLDQLGKTLIPRSQIAPP 187
Query 189 --ALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+ V + R+I A+ DP AA A + +L+ S R+ +++
Sbjct 188 QVGYLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH 239
>gi|126435337|ref|YP_001071028.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126235137|gb|ABN98537.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
Length=239
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/214 (34%), Positives = 105/214 (50%), Gaps = 5/214 (2%)
Query 11 FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG 70
QP +R+ V E + I +L G PG TLP ER LAE LGV+R ++R+ L RL G
Sbjct 3 LQPVNRRSVPEDVFDQIVTEVLSGQMQPGQTLPSERRLAEVLGVSRPAIREALKRLAGAG 62
Query 71 LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGP-DFLV--ELLEIRAALGPLIGRLAAAR 127
LIEVR G + VRD ++ L+ + G D V +LE R GP + LAA R
Sbjct 63 LIEVRQGDATTVRDFRRTAGLDLLPRLLMRGGELDLTVVRSILETRLHNGPKVAELAAER 122
Query 128 STPEDAEALCAALE-VVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR 186
P A L ++ ++ + D AA+Q A L ++ ++ + A L+Y + +
Sbjct 123 GGPSLAGRLDETVDALLTETDPVAAQQLA-LTFWDHVVDGADSIAFRLMYNTLRATYEPA 181
Query 187 EHALTGAYDDADPVLTDLRAINGAVLAGDPAAAA 220
AL + RA+ A++A DPA AA
Sbjct 182 LPALAAMMAEEVGRPDAYRAVTAAIVARDPAGAA 215
>gi|304407106|ref|ZP_07388760.1| GntR domain protein [Paenibacillus curdlanolyticus YK9]
gi|304344093|gb|EFM09933.1| GntR domain protein [Paenibacillus curdlanolyticus YK9]
Length=236
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/230 (31%), Positives = 109/230 (48%), Gaps = 8/230 (3%)
Query 15 DRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEV 74
D++ E I I I G G LP ++++ER GV R+++R+ L+ L+ MGLIE+
Sbjct 7 DKRNHYEEITEQIKALIGSGKLKVGDKLPSTKEMSERFGVGRSTMREALSGLKAMGLIEI 66
Query 75 RHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAE 134
R G G V + L P+ A +R G L ELLE R AL +AAA+ + D E
Sbjct 67 RQGGGCRVVREQPLAEPSSALASMRLDGTSLL-ELLEARQALEISNASIAAAKRSESDIE 125
Query 135 AL-CAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGG-----REH 188
L ++V+ A AA + D+A+ + + H+T N L L+ + R
Sbjct 126 QLRLIVADMVEAAGDDAAGERLDVAFHQAIAHATGNSILVQLFDTITQQTESAIRDVRRA 185
Query 189 ALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+ AD +L + I A+ GD A A + + +L A R+V +
Sbjct 186 EMYANRAVADQLLCEHNIICEAIATGDEALAGSAMREHLQHVA-RIVNKH 234
>gi|297250074|ref|ZP_06933775.1| GntR family transcriptional regulator [Brucella abortus bv. 5
str. B3196]
gi|297173943|gb|EFH33307.1| GntR family transcriptional regulator [Brucella abortus bv. 5
str. B3196]
Length=255
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/227 (33%), Positives = 106/227 (47%), Gaps = 22/227 (9%)
Query 21 ERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGS 80
E IA I ILDG F GS LP ER+L+ GV+R +R+ L++L+ GL+E R GSG
Sbjct 27 EEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGSGV 86
Query 81 VVRDPEGLT----HPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL 136
V D P VVE L +L+E+ A+ R+AA TPED + +
Sbjct 87 FVIDESNQKAFRIQPLVVEE------AQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQI 140
Query 137 CAALEVVQQADTA-AARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD 195
AL ++ A + R D A+ ++ +T N L + +E +G R H + A
Sbjct 141 KRALIGLEYAIISDKLRDEEDYAFHDAIVIATHNPHFIALCKHLE--YGAR-HVIRQART 197
Query 196 DADPVLTDL--------RAINGAVLAGDPAAAAATVEAYLNASALRM 234
+ L D+ +AI A+ GDP A E +L + RM
Sbjct 198 NTRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM 244
>gi|62316983|ref|YP_222836.1| GntR family transcriptional regulator [Brucella abortus bv. 1
str. 9-941]
gi|83268978|ref|YP_418269.1| GntR family regulatory protein [Brucella melitensis biovar Abortus
2308]
gi|189022255|ref|YP_001931996.1| Bacterial regulatory protein, GntR family [Brucella abortus S19]
11 more sequence titles
Length=246
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/227 (33%), Positives = 106/227 (47%), Gaps = 22/227 (9%)
Query 21 ERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGS 80
E IA I ILDG F GS LP ER+L+ GV+R +R+ L++L+ GL+E R GSG
Sbjct 18 EEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGSGV 77
Query 81 VVRDPEGLT----HPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL 136
V D P VVE L +L+E+ A+ R+AA TPED + +
Sbjct 78 FVIDESNQKAFRIQPLVVEE------AQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQI 131
Query 137 CAALEVVQQADTA-AARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD 195
AL ++ A + R D A+ ++ +T N L + +E +G R H + A
Sbjct 132 KRALIGLEYAIISDKLRDEEDYAFHDAIVIATHNPHFIALCKHLE--YGAR-HVIRQART 188
Query 196 DADPVLTDL--------RAINGAVLAGDPAAAAATVEAYLNASALRM 234
+ L D+ +AI A+ GDP A E +L + RM
Sbjct 189 NTRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM 235
>gi|83749283|ref|ZP_00946282.1| Transcriptional regulator, GntR family [Ralstonia solanacearum
UW551]
gi|207743575|ref|YP_002259967.1| transcriptional regulatory dna-binding protein [Ralstonia solanacearum
IPO1609]
gi|83724064|gb|EAP71243.1| Transcriptional regulator, GntR family [Ralstonia solanacearum
UW551]
gi|206594974|emb|CAQ61901.1| transcriptional regulatory dna-binding protein [Ralstonia solanacearum
IPO1609]
Length=255
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/232 (32%), Positives = 108/232 (47%), Gaps = 19/232 (8%)
Query 22 RIATTIADAILD--------GVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIE 73
R A ++A+A++D G PG LP E +L LGV+RT +R+ ++RLQ LIE
Sbjct 12 RRAQSLAEAVVDHVRQRIASGALRPGDKLPTESELMAALGVSRTVVREAISRLQAKALIE 71
Query 74 VRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDA 133
RHG GS V +P T ++ D L +LE+R AL LAA R+TPED
Sbjct 72 TRHGIGSFVLEPPAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDL 127
Query 134 EALCAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH---- 188
AL AL+ +Q AA DL + + HSTRN + + R
Sbjct 128 AALRNALDTFEQDQAEGNDSAASDLRFHLAIAHSTRNPHFVAVLDQLGKTLIPRSRIAPP 187
Query 189 --ALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY 238
+ V + R+I A+ DP AA A + +L+ S R+ +++
Sbjct 188 QVGYLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH 239
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 333756066840
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40