BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0494

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15839886|ref|NP_334923.1|  GntR family transcriptional regulat...   478    5e-133
gi|254230842|ref|ZP_04924169.1|  hypothetical protein TBCG_00487 ...   471    6e-131
gi|289568416|ref|ZP_06448643.1|  transcriptional regulator, gntR-...   438    3e-121
gi|183980844|ref|YP_001849135.1|  GntR family transcriptional reg...   379    2e-103
gi|118619656|ref|YP_907988.1|  GntR family transcriptional regula...   379    2e-103
gi|240171897|ref|ZP_04750556.1|  putative transcriptional regulat...   373    2e-101
gi|296168149|ref|ZP_06850170.1|  GntR family transcriptional regu...   336    2e-90 
gi|289756570|ref|ZP_06515948.1|  LOW QUALITY PROTEIN: predicted p...   185    5e-45 
gi|29899145|gb|AAP03112.1|  putative transcriptional regulator [S...   112    6e-23 
gi|467045|gb|AAA17229.1|  B2168_C2_205 [Mycobacterium leprae]          104    1e-20 
gi|126740909|ref|ZP_01756593.1|  Pyruvate dehydrogenase complex r...  99.0    6e-19 
gi|262199917|ref|YP_003271126.1|  regulatory protein GntR HTH [Ha...  98.6    8e-19 
gi|320010201|gb|ADW05051.1|  GntR domain protein [Streptomyces fl...  96.3    3e-18 
gi|159044518|ref|YP_001533312.1|  putative pyruvate dehydrogenase...  94.4    1e-17 
gi|92113862|ref|YP_573790.1|  GntR family transcriptional regulat...  92.4    5e-17 
gi|345008886|ref|YP_004811240.1|  GntR domain-containing protein ...  91.3    1e-16 
gi|114321432|ref|YP_743115.1|  GntR family transcriptional regula...  90.5    2e-16 
gi|300313520|ref|YP_003777612.1|  transcription regulator protein...  89.4    4e-16 
gi|291295830|ref|YP_003507228.1|  GntR domain-containing protein ...  89.0    6e-16 
gi|120403925|ref|YP_953754.1|  regulatory protein GntR [Mycobacte...  88.6    7e-16 
gi|226941757|ref|YP_002796831.1|  PdhR [Laribacter hongkongensis ...  87.4    2e-15 
gi|108799693|ref|YP_639890.1|  GntR family transcriptional regula...  87.4    2e-15 
gi|327440188|dbj|BAK16553.1|  transcriptional regulator [Solibaci...  86.3    4e-15 
gi|163738208|ref|ZP_02145624.1|  GntR-like protein [Phaeobacter g...  86.3    4e-15 
gi|307546140|ref|YP_003898619.1|  GntR family transcriptional reg...  85.5    6e-15 
gi|89895021|ref|YP_518508.1|  hypothetical protein DSY2275 [Desul...  85.5    6e-15 
gi|169630101|ref|YP_001703750.1|  GntR family transcriptional reg...  85.5    6e-15 
gi|111018059|ref|YP_701031.1|  GntR family transcriptional regula...  85.1    7e-15 
gi|290963031|ref|YP_003494213.1|  GntR family transcriptional reg...  85.1    8e-15 
gi|334342733|ref|YP_004555337.1|  GntR domain-containing protein ...  84.3    1e-14 
gi|271963654|ref|YP_003337850.1|  GntR family transcriptional reg...  84.3    1e-14 
gi|340625616|ref|YP_004744068.1|  putative transcriptional regula...  84.0    2e-14 
gi|339000166|ref|ZP_08638785.1|  GntR family transcriptional regu...  84.0    2e-14 
gi|344170578|emb|CCA82999.1|  putative transcriptional regulatory...  84.0    2e-14 
gi|344174237|emb|CCA86020.1|  putative transcriptional regulatory...  83.6    2e-14 
gi|226303639|ref|YP_002763597.1|  GntR family transcriptional reg...  83.6    2e-14 
gi|254471459|ref|ZP_05084861.1|  pyruvate dehydrogenase complex r...  83.6    2e-14 
gi|15607726|ref|NP_215100.1|  GntR family transcriptional regulat...  83.6    2e-14 
gi|295695141|ref|YP_003588379.1|  GntR domain-containing protein ...  83.6    2e-14 
gi|17545797|ref|NP_519199.1|  transcriptional regulatory DNA-bind...  83.2    3e-14 
gi|254254451|ref|ZP_04947768.1|  regulatory protein GntR [Burkhol...  83.2    3e-14 
gi|299067046|emb|CBJ38242.1|  putative transcriptional regulatory...  83.2    3e-14 
gi|297157740|gb|ADI07452.1|  transcriptional regulator [Streptomy...  83.2    3e-14 
gi|237816546|ref|ZP_04595538.1|  GntR family transcriptional regu...  82.8    4e-14 
gi|206590434|emb|CAQ37396.1|  transcriptional regulatory dna-bind...  82.8    4e-14 
gi|126435337|ref|YP_001071028.1|  GntR family transcriptional reg...  82.8    4e-14 
gi|304407106|ref|ZP_07388760.1|  GntR domain protein [Paenibacill...  82.8    4e-14 
gi|297250074|ref|ZP_06933775.1|  GntR family transcriptional regu...  82.8    4e-14 
gi|62316983|ref|YP_222836.1|  GntR family transcriptional regulat...  82.8    4e-14 
gi|83749283|ref|ZP_00946282.1|  Transcriptional regulator, GntR f...  82.4    5e-14 


>gi|15839886|ref|NP_334923.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|31791675|ref|NP_854168.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 gi|57116742|ref|NP_215008.2| GntR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 49 more sequence titles
 Length=242

 Score =  478 bits (1229),  Expect = 5e-133, Method: Compositional matrix adjust.
 Identities = 241/242 (99%), Positives = 242/242 (100%), Gaps = 0/242 (0%)

Query  1    LVEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR  60
            +VEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR
Sbjct  1    MVEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR  60

Query  61   QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI  120
            QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI
Sbjct  61   QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI  120

Query  121  GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE  180
            GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE
Sbjct  121  GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE  180

Query  181  HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD  240
            HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD
Sbjct  181  HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD  240

Query  241  RA  242
            RA
Sbjct  241  RA  242


>gi|254230842|ref|ZP_04924169.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C]
 gi|308231564|ref|ZP_07412931.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis 
SUMu001]
 gi|308369408|ref|ZP_07417681.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis 
SUMu002]
 26 more sequence titles
 Length=238

 Score =  471 bits (1211),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 238/238 (100%), Positives = 238/238 (100%), Gaps = 0/238 (0%)

Query  5    MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA  64
            MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA
Sbjct  1    MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA  60

Query  65   RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA  124
            RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA
Sbjct  61   RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA  120

Query  125  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184
            AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG
Sbjct  121  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  180

Query  185  GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA  242
            GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA
Sbjct  181  GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA  238


>gi|289568416|ref|ZP_06448643.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis 
T17]
 gi|289542170|gb|EFD45818.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis 
T17]
Length=224

 Score =  438 bits (1127),  Expect = 3e-121, Method: Compositional matrix adjust.
 Identities = 223/224 (99%), Positives = 224/224 (100%), Gaps = 0/224 (0%)

Query  19   VDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS  78
            +DERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS
Sbjct  1    MDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGS  60

Query  79   GSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCA  138
            GSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCA
Sbjct  61   GSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCA  120

Query  139  ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYDDAD  198
            ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYDDAD
Sbjct  121  ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYDDAD  180

Query  199  PVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA  242
            PVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA
Sbjct  181  PVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA  224


>gi|183980844|ref|YP_001849135.1| GntR family transcriptional regulator [Mycobacterium marinum 
M]
 gi|183174170|gb|ACC39280.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium 
marinum M]
Length=245

 Score =  379 bits (974),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 197/235 (84%), Positives = 210/235 (90%), Gaps = 0/235 (0%)

Query  5    MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA  64
            MNQSS+ QPPDRQRVDE+IAT+IADAILDGVFPPGS LPPER+LAE+LGVNRTSLRQGLA
Sbjct  1    MNQSSILQPPDRQRVDEQIATSIADAILDGVFPPGSALPPERELAEQLGVNRTSLRQGLA  60

Query  65   RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA  124
            RLQQMGLIE R GSG+VVRDP+ LTHPAVVEALVRKLGPDFLVE+LEIRAALGPLIGRLA
Sbjct  61   RLQQMGLIETRQGSGNVVRDPQSLTHPAVVEALVRKLGPDFLVEVLEIRAALGPLIGRLA  120

Query  125  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184
            A R++ EDAEAL AAL  V  ADTA ARQAADLAYFRVLIH TRNRALGLLYRWVE AFG
Sbjct  121  AERNSSEDAEALRAALAEVADADTAPARQAADLAYFRVLIHGTRNRALGLLYRWVEQAFG  180

Query  185  GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYR  239
            GREH LTGAY+DADPV+ DL AIN AVLAGDP  AAA VE YLNASALRM+  YR
Sbjct  181  GREHELTGAYEDADPVIADLTAINDAVLAGDPETAAAAVEGYLNASALRMIMCYR  235


>gi|118619656|ref|YP_907988.1| GntR family transcriptional regulator [Mycobacterium ulcerans 
Agy99]
 gi|118571766|gb|ABL06517.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium 
ulcerans Agy99]
Length=245

 Score =  379 bits (973),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 197/235 (84%), Positives = 210/235 (90%), Gaps = 0/235 (0%)

Query  5    MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA  64
            MNQSS+ QPPDRQRVDE+IAT+IADAILDGVFPPGS LPPER+LAE+LGVNRTSLRQGLA
Sbjct  1    MNQSSILQPPDRQRVDEQIATSIADAILDGVFPPGSALPPERELAEQLGVNRTSLRQGLA  60

Query  65   RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA  124
            RLQQMGLIE R GSG+VVRDP+ LTHPAVVEALVRKLGPDFLVE+LEIRAALGPLIGRLA
Sbjct  61   RLQQMGLIETRQGSGNVVRDPQSLTHPAVVEALVRKLGPDFLVEVLEIRAALGPLIGRLA  120

Query  125  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184
            A R++ EDAEAL AAL  V  ADTA ARQAADLAYFRVLIH TRNRALGLLYRWVE AFG
Sbjct  121  AERNSSEDAEALRAALAEVADADTAPARQAADLAYFRVLIHGTRNRALGLLYRWVEQAFG  180

Query  185  GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYR  239
            GREH LTGAY+DADPV+ DL AIN AVLAGDP  AAA VE YLNASALRM+  YR
Sbjct  181  GREHDLTGAYEDADPVIADLTAINDAVLAGDPETAAAAVEGYLNASALRMIMCYR  235


>gi|240171897|ref|ZP_04750556.1| putative transcriptional regulatory protein [Mycobacterium kansasii 
ATCC 12478]
Length=244

 Score =  373 bits (957),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 201/240 (84%), Positives = 213/240 (89%), Gaps = 0/240 (0%)

Query  1    LVEPMNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLR  60
            +VEPMNQSS FQPPDR RVDE+IA +IADAILDGVFPPGSTLPPERDLA + GVNRTSLR
Sbjct  1    MVEPMNQSSAFQPPDRLRVDEQIAASIADAILDGVFPPGSTLPPERDLAAQFGVNRTSLR  60

Query  61   QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLI  120
            QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFL ELLEIRAALGPLI
Sbjct  61   QGLARLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLAELLEIRAALGPLI  120

Query  121  GRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVE  180
            GRLAA R TP+DA AL  AL  ++ AD AAARQAADLAYFRVLIHSTRNRALGLLYRWVE
Sbjct  121  GRLAAQRHTPDDAHALRDALAALRDADGAAARQAADLAYFRVLIHSTRNRALGLLYRWVE  180

Query  181  HAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRD  240
            HAFGGREH LTGAY+DA+PVL DLRAI  AVL  DP AA A VEAYL ASALRM+ +Y +
Sbjct  181  HAFGGREHELTGAYNDAEPVLADLRAITKAVLECDPVAAGAAVEAYLRASALRMIVAYTE  240


>gi|296168149|ref|ZP_06850170.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896827|gb|EFG76456.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=240

 Score =  336 bits (861),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 183/234 (79%), Positives = 198/234 (85%), Gaps = 0/234 (0%)

Query  5    MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA  64
            MNQSS  +P DRQRVDE+IA +IADAILDG FPPGS LPPER+LAE+LGVNRTSLRQGLA
Sbjct  1    MNQSSPLRPLDRQRVDEQIAASIADAILDGAFPPGSALPPERELAEQLGVNRTSLRQGLA  60

Query  65   RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA  124
            RLQQMGLIE RHGSG+VV DP+ LTHPAVVEALVRKLGP+FLVEL EIRAALGPLIGR A
Sbjct  61   RLQQMGLIEARHGSGNVVADPQALTHPAVVEALVRKLGPEFLVELFEIRAALGPLIGRSA  120

Query  125  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184
            A R  PEDA AL AAL  V++AD+ AARQAADLAYFRVLIH + NRAL LLYRWVEHAFG
Sbjct  121  ARRGAPEDAGALRAALAAVREADSPAARQAADLAYFRVLIHHSGNRALALLYRWVEHAFG  180

Query  185  GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
            GREH LT +YDDA PV+  L AI  AVLAGD AAAAA VE YL ASA RM+ SY
Sbjct  181  GREHELTASYDDAAPVVAGLTAITDAVLAGDEAAAAAAVEEYLRASAQRMILSY  234


>gi|289756570|ref|ZP_06515948.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis 
T85]
 gi|289712134|gb|EFD76146.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis 
T85]
Length=120

 Score =  185 bits (470),  Expect = 5e-45, Method: Compositional matrix adjust.
 Identities = 113/119 (95%), Positives = 115/119 (97%), Gaps = 0/119 (0%)

Query  124  AAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF  183
            +A RSTPEDA A C ALEV+QQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF
Sbjct  2    SAVRSTPEDAVAECTALEVMQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF  61

Query  184  GGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA  242
            GGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA
Sbjct  62   GGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDRA  120


>gi|29899145|gb|AAP03112.1| putative transcriptional regulator [Streptomyces griseochromogenes]
Length=239

 Score =  112 bits (279),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 82/222 (37%), Positives = 112/222 (51%), Gaps = 1/222 (0%)

Query  16   RQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVR  75
            R+ + + + + + + IL G  P GS LPPER LA+  GV RT+L+    RL Q GL+E R
Sbjct  17   RETIVDVLESRLREDILTGRHPAGSYLPPERTLADGYGVTRTTLKHAFGRLMQAGLLETR  76

Query  76   HGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEA  135
            HG G+ VRD   L    ++  LVR   PD++ E+ E+R ++G LI   AAAR T      
Sbjct  77   HGVGTRVRDYLRLGGADLLPMLVRH-SPDWIGEVFEVRHSIGALIAERAAARGTARQRAE  135

Query  136  LCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD  195
            L   L  V  A    A Q AD+   R L  +T NR   LL   + +A+     AL G + 
Sbjct  136  LRTLLAAVADAGDTDAVQLADIEVHRALARATGNRVYVLLTNTLFNAYLPVRAALQGPFT  195

Query  196  DADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKS  237
            DA      L  +  AV AGD   A    E YL A+   M++ 
Sbjct  196  DAHVAHGRLAPVVEAVAAGDAPGARRAAEQYLTATERIMLEG  237


>gi|467045|gb|AAA17229.1| B2168_C2_205 [Mycobacterium leprae]
Length=105

 Score =  104 bits (259),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 54/96 (57%), Positives = 64/96 (67%), Gaps = 0/96 (0%)

Query  98   VRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEALCAALEVVQQADTAAARQAADL  157
            +RKLG +FL+EL EIRAALG LIG L + RST +D EALC AL  +  A+TA ARQ A L
Sbjct  1    MRKLGSEFLIELFEIRAALGSLIGCLVSDRSTFDDVEALCVALAGMCGAETALARQVAYL  60

Query  158  AYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGA  193
            AYFR    +      G    WVEH FGGRE+ LTG+
Sbjct  61   AYFRSSSKAFATVCWGCCIVWVEHTFGGREYELTGS  96


>gi|126740909|ref|ZP_01756593.1| Pyruvate dehydrogenase complex repressor [Roseobacter sp. SK209-2-6]
 gi|126718009|gb|EBA14727.1| Pyruvate dehydrogenase complex repressor [Roseobacter sp. SK209-2-6]
Length=257

 Score = 99.0 bits (245),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 72/231 (32%), Positives = 108/231 (47%), Gaps = 8/231 (3%)

Query  5    MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA  64
            MN +S F P   + + E +   I   I+DG+   G  LP ER+LAE LGV+R  LR+ L 
Sbjct  1    MNDTSPFDPVGHESIAEAVVEQIETMIVDGILKEGRKLPSERELAEALGVSRPKLREALQ  60

Query  65   RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLA  124
             L+  GLI+VRHG GS +    G      + +L  + G  F  + LE R        RLA
Sbjct  61   TLEDRGLIKVRHGEGSFIASLTGRAMSPALLSLYARYGRAF-YDYLEYRREQEAFASRLA  119

Query  125  AARSTPEDAEALCAALEVVQQA---DTAAARQAADLAYFRVLIHSTRNRAL----GLLYR  177
            A R+T  D E L   +  +Q+A   D A A Q ADL     ++ +++N  L      +Y 
Sbjct  120  AERATQSDKERLIDIIGEMQRAWEEDDAEASQEADLKLHVAVVDASQNTTLIHMMASVYD  179

Query  178  WVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN  228
                        L       + +L   + I  +++ GDPA A A   ++++
Sbjct  180  LTRQGVFYNRQFLRTMDGTGEKLLEQHKEIAQSIIDGDPARAEAAARSHMD  230


>gi|262199917|ref|YP_003271126.1| regulatory protein GntR HTH [Haliangium ochraceum DSM 14365]
 gi|262083264|gb|ACY19233.1| regulatory protein GntR HTH [Haliangium ochraceum DSM 14365]
Length=261

 Score = 98.6 bits (244),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 75/229 (33%), Positives = 116/229 (51%), Gaps = 3/229 (1%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
            + +P ++QRV E I   + + IL G + PG+ LPPER+L++RLGVNR SLR+ L +L+ +
Sbjct  1    MLRPVEKQRVAEEIVEQLRELILTGRYEPGAKLPPERELSKRLGVNRASLREALKKLEHL  60

Query  70   GLIEVRHGSGSVVRD---PEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAA  126
            GL+ +R G G+ V++     G+   + +  L     PD + + LE R   G  + RLAA 
Sbjct  61   GLVRIRQGDGTRVQNFMETGGIELVSYLLPLAPTSHPDLIRDTLEFRRIFGREVARLAAQ  120

Query  127  RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR  186
            R+  ED   +  A E  +   + +     D  ++  L   T N+ +GLL   V  A    
Sbjct  121  RARAEDIARVRVAAERAEGDVSKSELFDIDFEFYVALTACTGNQVMGLLINTVRDAVRSY  180

Query  187  EHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMV  235
               LT     A+ V    RA+  A+ A D   AA   + YL   A R++
Sbjct  181  TPVLTQLTTPAEAVRAHHRALLAAIEAHDVERAAHIADEYLGRGAERVL  229


>gi|320010201|gb|ADW05051.1| GntR domain protein [Streptomyces flavogriseus ATCC 33331]
Length=246

 Score = 96.3 bits (238),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 80/242 (34%), Positives = 123/242 (51%), Gaps = 18/242 (7%)

Query  8    SSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQ  67
            +S+ +P  R+     +A  + D + +G   PG+ LP ER LA+ LGV R+S+R  L+ L 
Sbjct  11   TSLLRPVVRESSVSEVAKRLLDHLSEGNLKPGTRLPAERQLADALGVARSSVRGALSALD  70

Query  68   QMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAAR  127
             +G+IE+R GSGS VR+      P  +   +  LG     +L+E+R  +  +  RLAA R
Sbjct  71   VLGIIEIRPGSGSYVREGTSEFLPRAINWGL-MLGQRRTQDLVEVRTFMEGMSARLAADR  129

Query  128  STPEDAEALCAALEVVQQADT-AAARQAADLAYFRVLIHSTRNRALG--------LLYRW  178
            ++ ED E L A LE +++A T   A   AD+A+     H  RN  L         LL  W
Sbjct  130  ASEEDVERLEAHLERMREAGTDVKAFIDADIAFHLETAHIARNTVLSDILHSIRALLQVW  189

Query  179  VEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
            +E A G  E  ++G   +   VL  +R       AGDP  A A +  ++  ++ R+  S 
Sbjct  190  MERA-GDIEGTVSGTLHEHGAVLDAIR-------AGDPEGADAAMAEHMRLASDRLRLSL  241

Query  239  RD  240
            R+
Sbjct  242  RE  243


>gi|159044518|ref|YP_001533312.1| putative pyruvate dehydrogenase complex repressor [Dinoroseobacter 
shibae DFL 12]
 gi|157912278|gb|ABV93711.1| putative pyruvate dehydrogenase complex repressor [Dinoroseobacter 
shibae DFL 12]
Length=260

 Score = 94.4 bits (233),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 65/172 (38%), Positives = 90/172 (53%), Gaps = 10/172 (5%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
            +FQP D   V + + T I D I+  V   G+ LP ERDLAE LGV+R  LR+ L RL+  
Sbjct  7    IFQPIDHDSVADAVVTQIEDLIVSRVLRQGARLPAERDLAEALGVSRPKLREALKRLEDE  66

Query  70   GLIEVRHGSGSVVRDPEGLTHPAVVEALV---RKLGPDFLVELLEIRAALGPLIGRLAAA  126
            GL+E R G GS V     LT+ A+  AL+    + G  F  E LE R        RLAA 
Sbjct  67   GLLETRKGEGSFVAQ---LTNTAMSPALLDLFSRHGEAFF-EYLEYRKEQEAFAARLAAE  122

Query  127  RSTPEDAEALC---AALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLL  175
            R T  DA+A+    A + + Q  D A A   +D+A+   ++ ++ N  L  +
Sbjct  123  RHTDFDAQAISQHLANMRIAQDRDDARASMESDIAFHSAIVDASHNTMLSHM  174


>gi|92113862|ref|YP_573790.1| GntR family transcriptional regulator [Chromohalobacter salexigens 
DSM 3043]
 gi|91796952|gb|ABE59091.1| transcriptional regulator, GntR family [Chromohalobacter salexigens 
DSM 3043]
Length=251

 Score = 92.4 bits (228),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 80/242 (34%), Positives = 119/242 (50%), Gaps = 38/242 (15%)

Query  17   QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH  76
            QR+  +IA  +   I DG FPPGS LPPERDLA++LGV+R S+R+ L  L+ +G++EVR 
Sbjct  9    QRLYRQIADQLQQLIRDGEFPPGSLLPPERDLAQQLGVSRASVREALIALEVVGIVEVRV  68

Query  77   GSGSVVRDPEGLTHPAVVEALVRK----LGPDFLVE-------------LLEIRAALGPL  119
            G G +V++ + +   +V++A  RK    L P+F  E             LL+ R  L P 
Sbjct  69   GHGVLVKEVDAMPPGSVMQAAARKEPWALDPEFASEIELNLDEEIPPFSLLQARRYLEPE  128

Query  120  IGRLAAARSTPEDAEALCAALE-VVQQADTAAARQAAD-LAYFRV-----------LIHS  166
               LAA  +T ED  A+ AALE  +   +      A D L + R+           LI  
Sbjct  129  NAALAAMNATDEDLSAIRAALERNIYDNNHGGGNLAGDRLLHIRIAEASGNAAYALLIKH  188

Query  167  TRNRALGLLYRWVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAY  226
                  G+++R ++  F       TG    +     D   +  A+ A DPAAA   +E +
Sbjct  189  LLGHQYGVMFRRLQELF-----METGMPQRSQ---EDHERLVAAIEARDPAAARQAMEVH  240

Query  227  LN  228
            L+
Sbjct  241  LD  242


>gi|345008886|ref|YP_004811240.1| GntR domain-containing protein [Streptomyces violaceusniger Tu 
4113]
 gi|344035235|gb|AEM80960.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
Length=260

 Score = 91.3 bits (225),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 81/227 (36%), Positives = 116/227 (52%), Gaps = 19/227 (8%)

Query  23   IATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGSVV  82
            +A  +   IL G  PPGS +PPER+LAE LGV+R S+R+ L  L   GL+  R GSG+VV
Sbjct  17   LAVGLERLILSGELPPGSRVPPERELAESLGVSRGSVREALRALASRGLVARRPGSGTVV  76

Query  83   RDPEGLTHPAVVEALVRKLGPDFLVELL---EIRAALGPLIGRLAAARSTPEDAEALCAA  139
             DP       ++ +     G D   ELL   E+RA + P +   AA R+TP D   L A 
Sbjct  77   LDPGATPRGDILAS-----GLDATAELLQVMEVRACIEPSVTARAARRATPADIVQLHAL  131

Query  140  LEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF-----GGREHALTGAY  194
            L+ +++  T       D  + R +   TRN    LL R ++  +     G RE +L+ A 
Sbjct  132  LDAMRREPTRREFTDLDRTFHRAIAQYTRN---PLLLRLLDRVYEIGEPGRRETSLSAAR  188

Query  195  DDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDR  241
              A   + + +AI  A+ A DP AA A  E +L+ S L  ++  R R
Sbjct  189  RRA--TIEEHQAILRAIEARDPEAARAASETHLD-SVLHRIEEQRRR  232


>gi|114321432|ref|YP_743115.1| GntR family transcriptional regulator [Alkalilimnicola ehrlichii 
MLHE-1]
 gi|114227826|gb|ABI57625.1| transcriptional regulator, GntR family [Alkalilimnicola ehrlichii 
MLHE-1]
Length=255

 Score = 90.5 bits (223),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 72/226 (32%), Positives = 106/226 (47%), Gaps = 23/226 (10%)

Query  18   RVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHG  77
            R+ + I   I + IL+GV  PG  LP ER+LA+ L V+R SLR+ L +L+  GL++ R G
Sbjct  10   RLSDSIIQQIEELILNGVLKPGDRLPAERELAQELDVSRPSLREALLKLEARGLLKARPG  69

Query  78   SGSVVRDPEGLTHPAVVEALVRKLG--PDFLVELLEIRAALGPLIGRLAAARSTPEDAEA  135
             G+ V D   +  P V E LV  L   P+   ++LE+R AL  +    AA R+T  D E 
Sbjct  70   GGTFVAD---IAAPTVTEPLVELLKDRPEATFQILELRHALEEMAAWYAAERATEADREI  126

Query  136  LCAALEVVQ-------------QADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHA  182
            +    E +              +AD       AD ++   LIH  R      L+  + ++
Sbjct  127  IRRRFEALMELYDTNDDPDLDAEADAEFHLAIADASHNVALIHVVRG-----LFSLLRNS  181

Query  183  FGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN  228
                 H L    +D  P+    RAI  A++AGD A A      +L 
Sbjct  182  ITRSLHQLKQRNEDYAPLREQHRAIYEAIMAGDAARAKEAANVHLT  227


>gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076305|gb|ADJ65704.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
Length=233

 Score = 89.4 bits (220),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 76/235 (33%), Positives = 124/235 (53%), Gaps = 17/235 (7%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
            +FQ    Q + + +A  + + I  G FP GS LP E  LA++ GV+RT +R+ +ARL+  
Sbjct  1    MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE  60

Query  70   GLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARST  129
            G++E R GSG  V +  G+  P  ++       P+ +++++E+R A+   +   AA R +
Sbjct  61   GVVEPRQGSGVFVTEQAGI-KPLRID-YTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRS  118

Query  130  PEDAEALCAALEVVQQADTAAARQ--AADLAYFRVLIHSTRN----RALGLLYRWVEHAF  183
             ED +A+ AAL  +   D AA     AAD+A+ R L  +TRN    + L  L +++E A 
Sbjct  119  AEDLQAIEAALAQI-GVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAAT  177

Query  184  G---GREHALTGAYDD-ADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRM  234
                G E      Y+D +  V  +  AI  A+ AGD  AA    + ++  +A R+
Sbjct  178  AVTRGNE----ARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL  228


>gi|291295830|ref|YP_003507228.1| GntR domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290470789|gb|ADD28208.1| GntR domain protein [Meiothermus ruber DSM 1279]
Length=227

 Score = 89.0 bits (219),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 70/217 (33%), Positives = 102/217 (48%), Gaps = 14/217 (6%)

Query  18   RVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHG  77
            RV E++A  +   + DGV+ PG  LP ERDLA R GV+R+S+R+ L  L+  G +E+R G
Sbjct  6    RVSEKLAKDLEQLLQDGVWRPGDQLPGERDLASRFGVSRSSVREALRILELNGWVEIRQG  65

Query  78   SGSVVRDPEGLTHPAVVEALVRKL-----GPDFLVELLEIRAALGPLIGRLAAARSTPED  132
             G+ V  P         E+  R+L       DF++EL E+R  L P +  LAA RS P+ 
Sbjct  66   DGTRVASPS--------ESFGRRLRSRLHQEDFILELFEVRRILEPAVAALAAERSHPQG  117

Query  133  AEALCAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALT  191
               L   L   Q A     R    D+ + + L   +RN  L  +   +E          T
Sbjct  118  VARLEELLAQQQAAKEDLYRFVELDMFFHKTLADMSRNAVLSEIVSLLEVELRQIRLVST  177

Query  192  GAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN  228
                     L++   I  A+ A DP AA   + A+L+
Sbjct  178  AKRYRPQVTLSEHLRILEAIRASDPEAARQAMLAHLS  214


>gi|120403925|ref|YP_953754.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1]
 gi|119956743|gb|ABM13748.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii 
PYR-1]
Length=240

 Score = 88.6 bits (218),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 79/227 (35%), Positives = 112/227 (50%), Gaps = 33/227 (14%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
             +P +R+ V E +   I   +L G   PG TLP ER LAE LGV+R ++R+ L RL   G
Sbjct  3    LRPVNRRSVPEDVFDQIISDVLSGEMRPGETLPSERRLAEVLGVSRPAIREALKRLAAAG  62

Query  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVEL------LEIRAALGPLIGRLA  124
            LIEVR G  + VRD       A ++ L R L  D  ++L      LE R   GP +  LA
Sbjct  63   LIEVRQGDATTVRD---FRRTAGLDLLPRLLIRDGDLDLAVVRSILETRLHNGPKVAELA  119

Query  125  AARSTPEDAEALCAALE-VVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF  183
            A R  PE ++ L  A+  +  +AD  AA++ A L ++  ++    + A  L++       
Sbjct  120  AQRRGPELSDELNTAMRALADEADPVAAQRHA-LDFWDHIVDGADSIAFRLMF-------  171

Query  184  GGREHALTGAYDDADPVLTDL-----------RAINGAVLAGDPAAA  219
                + L   Y+ A P L  +           RA+  AVLAGDPAAA
Sbjct  172  ----NTLRATYEPALPALATMMAAEVGRVDAYRAVAEAVLAGDPAAA  214


>gi|226941757|ref|YP_002796831.1| PdhR [Laribacter hongkongensis HLHK9]
 gi|226716684|gb|ACO75822.1| PdhR [Laribacter hongkongensis HLHK9]
Length=257

 Score = 87.4 bits (215),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 75/241 (32%), Positives = 112/241 (47%), Gaps = 10/241 (4%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
             +QP    R+ + I   +   ILDGV  PG  LPPER L+E+LGV+R SLR+ + ++   
Sbjct  2    TYQPVRVPRLADAIVKELEAIILDGVLKPGDRLPPERQLSEQLGVSRASLREAIKQMAAR  61

Query  70   GLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARST  129
            GL+E R G G+ V +    T     + ++ +  P+   ++LE R  +   +  LAA R+T
Sbjct  62   GLLESRQGGGTFVTNRLDRTFAGPWQEMLAQ-HPNLREDVLEFRRMMEGQVAALAAVRAT  120

Query  130  PEDAEALCA---ALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR  186
              D   L      LE   Q D  A +  AD+A+   +  +  N  L  L   +       
Sbjct  121  EADRARLVRLYDELESACQGDDLARQSRADVAFHLGIADAAHNAMLAHLMAGLLDMLASN  180

Query  187  EHA-LTGAYDDADPV----LTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSYRDR  241
             H  +   +  A PV    L   RAI  AVLAG P  A    E +++      + S+RD 
Sbjct  181  IHENVANLFHHAQPVAGQLLAQHRAIQEAVLAGRPDEARQAAEGHIH-FIHSTLTSWRDE  239

Query  242  A  242
            A
Sbjct  240  A  240


>gi|108799693|ref|YP_639890.1| GntR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868803|ref|YP_938755.1| GntR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108770112|gb|ABG08834.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS]
 gi|119694892|gb|ABL91965.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS]
Length=239

 Score = 87.4 bits (215),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 76/225 (34%), Positives = 109/225 (49%), Gaps = 27/225 (12%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
             QP +R+ V E +   I   +L G   PG TLP ER LAE LGV+R ++R+ L RL   G
Sbjct  3    LQPVNRRSVPEDVFDQIVTEVLSGQMQPGQTLPSERRLAEVLGVSRPAIREALKRLAGAG  62

Query  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGP-DFLV--ELLEIRAALGPLIGRLAAAR  127
            LIEVR G  + VRD        ++  L+ + G  D  V   +LE R   GP +  LAA R
Sbjct  63   LIEVRQGDATTVRDFRRTAGLDLLPRLLIRGGELDLTVVRSILETRLHNGPKVAELAAER  122

Query  128  STPEDAEALCAALEVVQ-QADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR  186
              P  AE L   ++ ++ + D  AA+Q A L ++  ++    + A  L+Y          
Sbjct  123  GGPGLAERLDETVDALEAETDPVAAQQLA-LTFWDHVVDGADSIAFRLMY----------  171

Query  187  EHALTGAYDDADPVLTDL-----------RAINGAVLAGDPAAAA  220
             + L   Y+ A P L  +           RA+  A++A DPA AA
Sbjct  172  -NTLRATYEPALPALATMMAEEVGRPDAYRAVTAAIVARDPAGAA  215


>gi|327440188|dbj|BAK16553.1| transcriptional regulator [Solibacillus silvestris StLB046]
Length=233

 Score = 86.3 bits (212),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 65/218 (30%), Positives = 104/218 (48%), Gaps = 6/218 (2%)

Query  15   DRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEV  74
            ++Q+V E I   I   I  G+   G  LPPER+LA + GV+RTS+R+ L  L+    +E+
Sbjct  5    NKQKVYEIIIQKIQTEITAGILEAGEKLPPERELAVKYGVSRTSIREALRLLELSDFVEI  64

Query  75   RHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAE  134
            R G G+ ++  E  T    + ++  K     L E+LE+R  L      LAA R+T +D E
Sbjct  65   RPGDGTFIKTNEQQTIQQQLTSVALKTDQTTLYEMLELRLILESQCAALAALRATGQDIE  124

Query  135  ALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALG-LLYRWVEHAFG----GREHA  189
             +   LE ++  D       ADL +   +  +  N  L  L+  +  H        R+H 
Sbjct  125  KIARTLEAMKNTDDEEIGIQADLDFHMAIAAAANNSVLAQLISSFASHMRSTIEVTRKHR  184

Query  190  LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYL  227
            L+   + A   L + RAI  A+  G+   A   +E ++
Sbjct  185  LSSKENFA-RTLEEHRAIFIAISRGESDRAKVLMEDHI  221


>gi|163738208|ref|ZP_02145624.1| GntR-like protein [Phaeobacter gallaeciensis BS107]
 gi|163743802|ref|ZP_02151175.1| pyruvate dehydrogenase complex repressor [Phaeobacter gallaeciensis 
2.10]
 gi|161382951|gb|EDQ07347.1| pyruvate dehydrogenase complex repressor [Phaeobacter gallaeciensis 
2.10]
 gi|161388824|gb|EDQ13177.1| GntR-like protein [Phaeobacter gallaeciensis BS107]
Length=256

 Score = 86.3 bits (212),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 73/227 (33%), Positives = 109/227 (49%), Gaps = 12/227 (5%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
            FQ    +++   +   I   IL G+  PG  LP ER+LAERLGV+R SLR  LA LQ  G
Sbjct  3    FQKVQPEKLSASVVRQIEQFILRGILTPGERLPAERELAERLGVSRPSLRDALAELQDRG  62

Query  71   LIEVRHGSGSVVRDPEGLTH-PAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARST  129
            L+  R G+G  V D  G    PA+V+        + + + L  R  +  L    AA   +
Sbjct  63   LLVSRAGAGVFVADVLGSAFSPALVQLFASH--DEAVFDYLSFRRDMEGLAAERAAKYGS  120

Query  130  PEDAEALCAALEVVQQA-DTAAARQAA--DLAYFRVLIHSTRNRALGLLYRWV-----EH  181
              D E +    E ++QA D A + +AA  D  +   ++ ++ N  +  + R +     E 
Sbjct  121  DYDLEVIQTIFEKMEQAGDPATSEEAAALDAQFHSAIMDASHNVVMLHMMRSMFELLREG  180

Query  182  AFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN  228
             F  R   +   +   D +L    AIN A+ A DP+AA A VE +L+
Sbjct  181  VFYNRR-VMFQQHTTRDALLAQHSAINAALQARDPSAARAAVETHLD  226


>gi|307546140|ref|YP_003898619.1| GntR family transcriptional regulator [Halomonas elongata DSM 
2581]
 gi|307218164|emb|CBV43434.1| GntR domain protein [Halomonas elongata DSM 2581]
Length=251

 Score = 85.5 bits (210),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 57/141 (41%), Positives = 81/141 (58%), Gaps = 17/141 (12%)

Query  17   QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH  76
            QR+  +IA  +   I DG FPPGS LPPERDLA++LGV+R S+R+ L  L+ +G++EVR 
Sbjct  9    QRLYRQIADQLQQLIRDGEFPPGSLLPPERDLAQQLGVSRASVREALIALEVVGIVEVRV  68

Query  77   GSGSVVRDPEGLTHPAVVEALVRK----LGPDFLVE-------------LLEIRAALGPL  119
            G G +V++ + +   +V+ A  RK    L P+F  E             LL+ R  L P 
Sbjct  69   GHGVLVKEVDAMPPGSVMRAAARKEPWALDPEFASEIELNLDEEIPPFSLLQARRYLEPE  128

Query  120  IGRLAAARSTPEDAEALCAAL  140
               LAA  ++  D EA+ AAL
Sbjct  129  NAALAAMNASDADLEAIRAAL  149


>gi|89895021|ref|YP_518508.1| hypothetical protein DSY2275 [Desulfitobacterium hafniense Y51]
 gi|89334469|dbj|BAE84064.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=243

 Score = 85.5 bits (210),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 57/171 (34%), Positives = 90/171 (53%), Gaps = 6/171 (3%)

Query  5    MNQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLA  64
            M  S   +P   +++ E I   I   ++ G   PG  LP ERDLA RL V+R S+R+ L+
Sbjct  1    MEGSMDLKPIKTKKIYEEIIEQIRVLVVKGDLKPGDRLPSERDLAVRLNVSRASVREALS  60

Query  65   RLQQMGLIEVRHGSGSVVRDPEGLTHPAVVEAL--VRKLGPDFLVELLEIRAALGPLIGR  122
             L+ MGL+E+R G G+ ++    +   +VV  L  V  +  D ++ELLE+R  L      
Sbjct  61   ALEMMGLLEIRSGEGTYIK---KINLDSVVTPLTWVLSMEKDTILELLEVRKMLEGQTVT  117

Query  123  LAAARSTPEDAEALCAALEVVQ-QADTAAARQAADLAYFRVLIHSTRNRAL  172
            LAA R+T +D   L  AL+ +     T    + ADL +   +  +++N+ L
Sbjct  118  LAAKRATSDDLRELEGALKAMHDDVQTGQLGEEADLRFHYAVARASKNKIL  168


>gi|169630101|ref|YP_001703750.1| GntR family transcriptional regulator [Mycobacterium abscessus 
ATCC 19977]
 gi|169242068|emb|CAM63096.1| Putative transcriptional regulator, GntR family [Mycobacterium 
abscessus]
Length=242

 Score = 85.5 bits (210),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 60/179 (34%), Positives = 96/179 (54%), Gaps = 7/179 (3%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
             QP  RQ + + I + +A  +L G   PG TLP ER LAE LGV+R ++R+ L RL++ G
Sbjct  3    LQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLERSG  62

Query  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDF----LVELLEIRAALGPLIGRLAAA  126
            LI++R G  +V+RD        V+  L+   G D     L  ++E RA +GP + RLAA 
Sbjct  63   LIQIRQGGSTVIRDYRSDAGFDVLPLLL-AYGGDVDRRTLASVIEARAIIGPQVARLAAQ  121

Query  127  RS--TPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF  183
            R+  TP  A+ L A    ++  D    R    L ++ ++I +  + A  L++  +  ++
Sbjct  122  RAHQTPGVADRLRAMTSELEAEDDPLQRMWQALGFWELVIDTADSIAFRLVFNTMRDSY  180


>gi|111018059|ref|YP_701031.1| GntR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817589|gb|ABG92873.1| transcriptional regulator, GntR family protein [Rhodococcus jostii 
RHA1]
Length=247

 Score = 85.1 bits (209),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 57/177 (33%), Positives = 93/177 (53%), Gaps = 3/177 (1%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
            +F+P  R+     +   I   +L G    G  LP ER LAE  GV+R ++R+ + +L Q 
Sbjct  4    MFEPIARKSASTEVFDQITARVLGGDLAAGDALPSERRLAEAFGVSRPAIREAIQKLAQA  63

Query  70   GLIEVRHGSGSVVRDPEGLTHPAVV-EALVRKLGPDFLV--ELLEIRAALGPLIGRLAAA  126
            GL+EVR G  + VRD      P ++ + LVR   PD+ V   +LE R  +G  + RLAA 
Sbjct  64   GLVEVRQGDATSVRDFRQHGGPELLSQLLVRDGVPDWAVVRSVLEARRMIGVQVARLAAG  123

Query  127  RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF  183
            R+T E   AL  A++ +       A+Q   LA++  ++ +  + A  L++  + +A+
Sbjct  124  RATDESGAALRDAVDHLASDSDPVAQQVGALAFWERVVDTADSIAFRLIFNSLRNAY  180


>gi|290963031|ref|YP_003494213.1| GntR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260652557|emb|CBG75690.1| putative gntR-famly transcriptional regulator [Streptomyces scabiei 
87.22]
Length=249

 Score = 85.1 bits (209),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 74/205 (37%), Positives = 104/205 (51%), Gaps = 14/205 (6%)

Query  31   ILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGSVVRDPEGLTH  90
            I+ G +PPGS + P +     LGV++T +R+ L  L   GL+E +   G+ +R       
Sbjct  21   IIRGDYPPGSVVDPVK-FETELGVSKTVVREALRVLASKGLLESKQKRGTTIRPRADWN-  78

Query  91   PAVVEALVRKLGPD-----FLVELLEIRAALGPLIGRLAAARSTPEDAEALCAALEVVQQ  145
              +   L+R  G       FL +L E+RA + P   RLAA R TP D +AL  AL+ +  
Sbjct  79   -LLDSDLLRWQGSSAPTDGFLEDLAEVRAIVEPAGARLAATRRTPADLDALRRALDAMAA  137

Query  146  ADT-AAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGA--YDDADPVLT  202
            A T A A   ADLA+ R L+ +  N  L  +   +E     R+  + GA  + D+ PV  
Sbjct  138  AGTDAEAMVEADLAFHRALLEAAHNELLSRMEVVIEAGLRVRDRIVHGALHFSDSIPVHQ  197

Query  203  DLRAINGAVLAGDPAAAAATVEAYL  227
            DL     AV AGDP AA A VE+ L
Sbjct  198  DLLT---AVEAGDPDAAVAAVESLL  219


>gi|334342733|ref|YP_004555337.1| GntR domain-containing protein [Sphingobium chlorophenolicum 
L-1]
 gi|334103408|gb|AEG50831.1| GntR domain protein [Sphingobium chlorophenolicum L-1]
Length=244

 Score = 84.3 bits (207),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 61/170 (36%), Positives = 86/170 (51%), Gaps = 11/170 (6%)

Query  9    SVFQPPDR--QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARL  66
            S +Q  D   + V E+IAT        G++PPG  LPPERDLA  LGV R +LR+GL +L
Sbjct  12   SAWQAVDTLVREVKEKIAT--------GIWPPGYRLPPERDLAADLGVARNTLRRGLKQL  63

Query  67   QQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAA  126
            +  G IE   G GS V +         +EAL+ +       +++EIR  L P    LAA 
Sbjct  64   EGEGHIERHVGRGSFVAEQRS-DRDLSIEALIARAIDASPADIIEIRVLLEPWAASLAAM  122

Query  127  RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLY  176
            R++ +D   +   +E  QQ    +A    D  +   +I ST NR L  L+
Sbjct  123  RASAQDLVTIRECVEKCQQVTDLSAFAYWDAKFHEAIIASTGNRLLECLF  172


>gi|271963654|ref|YP_003337850.1| GntR family transcriptional regulator [Streptosporangium roseum 
DSM 43021]
 gi|270506829|gb|ACZ85107.1| GntR family transcriptional regulator [Streptosporangium roseum 
DSM 43021]
Length=255

 Score = 84.3 bits (207),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 62/175 (36%), Positives = 92/175 (53%), Gaps = 7/175 (4%)

Query  7    QSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARL  66
            QSSV  P   Q V   +A  +  A+  G + PG  LP ER+LA  L V+R ++R+ + RL
Sbjct  11   QSSVLSPVKVQSVATEVADRLMTAVAIGDYLPGERLPGERELATILDVSRATVREAIGRL  70

Query  67   QQMGLIEVRHG--SGSVVRDPEGLTHPAVVEALVRKLGPDF--LVELLEIRAALGPLIGR  122
            Q +G++E++ G   G+ VR        A   A+ R L P +  L +L ++R  +  L+ R
Sbjct  71   QAVGIVEIKRGRTGGAYVRTS---WTEATASAVRRTLLPRWPELEQLFDLRCLVEGLVAR  127

Query  123  LAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYR  177
             AA R T ED  A+  AL+   QA T    QAAD A+   ++ +T N  +  L R
Sbjct  128  TAALRRTDEDLAAMRVALDGYAQARTLGQEQAADAAFHGAVLAATGNPKISALSR  182


>gi|340625616|ref|YP_004744068.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340003806|emb|CCC42932.1| putative transcriptional regulatory protein (GNTR-family) [Mycobacterium 
canettii CIPT 140010059]
Length=240

 Score = 84.0 bits (206),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 76/240 (32%), Positives = 110/240 (46%), Gaps = 12/240 (5%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
             QP  R+ V E +   IA  +L G  PPG  LP ER LAE LGV+R ++R+ L RL   G
Sbjct  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62

Query  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVR------KLGPDFLVELLEIRAALGPLIGRLA  124
            L+EVR G  + VRD       A ++ L R      +L    +  +LE R    P +  LA
Sbjct  63   LVEVRQGDVTTVRD---FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELA  119

Query  125  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184
            A R+ PE AE L  +L  +   +     Q   L ++  ++ S  +    L+Y     A+ 
Sbjct  120  AERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYE  179

Query  185  GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYL---NASALRMVKSYRDR  241
                ALT     A    +D R +  A+ +GDP  A    +  L   N S + ++ S   R
Sbjct  180  PTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLDSQASR  239


>gi|339000166|ref|ZP_08638785.1| GntR family transcriptional regulator [Halomonas sp. TD01]
 gi|338762943|gb|EGP17956.1| GntR family transcriptional regulator [Halomonas sp. TD01]
Length=257

 Score = 84.0 bits (206),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 69/219 (32%), Positives = 105/219 (48%), Gaps = 22/219 (10%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
             + P  +QR+ + I   +   IL+G   PG  LPPER+LAER GV+R SLR+ + +L   
Sbjct  2    TYPPLRQQRLADVITERLEAMILEGSLKPGQRLPPERELAERFGVSRPSLREAIQKLAAR  61

Query  70   GLIEVRHGSGSVVRDP--EGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAAR  127
            GL+  R G G+ V +    G T P ++E L R    +F ++LLE R A+  +    AA R
Sbjct  62   GLLTSRQGGGTFVNETLNSGYTDP-LLEMLSRH--NEFHLDLLEFRDAMEGISAYYAALR  118

Query  128  STPEDAEALCAALEVV----------QQA--DTAAARQAADLAYFRVLIHSTRNRALGLL  175
            STP D   L    E +          Q+A  D A     A+ A+  +L+H+ R      +
Sbjct  119  STPADKAVLIQRFEELDGGFVGANPAQEAKLDAAFHLAIAEAAHNVLLLHTIRG-----I  173

Query  176  YRWVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAG  214
            +  +E +       L    D    ++   RA+  A+L G
Sbjct  174  FHLLEQSIVDNLAHLFAKPDSRSQLMKQHRALLDAILEG  212


>gi|344170578|emb|CCA82999.1| putative transcriptional regulatory dna-binding transcription 
regulator protein [blood disease bacterium R229]
Length=255

 Score = 84.0 bits (206),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 73/229 (32%), Positives = 108/229 (48%), Gaps = 11/229 (4%)

Query  17   QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH  76
            Q + E +   I   I  G   PG  LP E +L   LGV+RT +R+ ++RLQ   LIE RH
Sbjct  15   QSLAETVVDHIGQRIASGSLRPGDKLPTESELMGALGVSRTVVREAISRLQAKALIETRH  74

Query  77   GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL  136
            G GS V +P      A ++        D L  +LE+R AL      LAA R+TPED   L
Sbjct  75   GIGSFVLEPRA---EASIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL  130

Query  137  CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNR----ALGLLYRW--VEHAFGGREHA  189
             +AL+  +Q        AA DL +   + H+TRN+     LG L +   +       +  
Sbjct  131  RSALDTFEQDQANGNDSAASDLRFHLAIAHATRNQHFVAVLGQLGKTLILRSRIAPTQVG  190

Query  190  LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
                 +    V  + R+I  A+   DP AA A +  +L+ S  R+ +++
Sbjct  191  YLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH  239


>gi|344174237|emb|CCA86020.1| putative transcriptional regulatory dna-binding transcription 
regulator protein [Ralstonia syzygii R24]
Length=255

 Score = 83.6 bits (205),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 73/229 (32%), Positives = 108/229 (48%), Gaps = 11/229 (4%)

Query  17   QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH  76
            Q + E +   I   I  G   PG  LP E +L   LGV+RT +R+ ++RLQ   LIE RH
Sbjct  15   QSLAETVVDHIGQRIASGSLRPGDKLPTESELMGTLGVSRTVVREAISRLQAKALIETRH  74

Query  77   GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL  136
            G GS V +P      A ++        D L  +LE+R AL      LAA R+TPED   L
Sbjct  75   GIGSFVLEPRA---EAALQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL  130

Query  137  CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNR----ALGLLYRWV--EHAFGGREHA  189
             +AL+  +Q        AA DL +   + H+TRN+     LG L + +         +  
Sbjct  131  RSALDTFEQDQANGNDSAASDLRFHLAIAHATRNQHFVAVLGQLGKTLIPRSRIAPTQVG  190

Query  190  LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
                 +    V  + R+I  A+   DP AA A +  +L+ S  R+ +++
Sbjct  191  YLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH  239


>gi|226303639|ref|YP_002763597.1| GntR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
 gi|226182754|dbj|BAH30858.1| putative GntR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
Length=240

 Score = 83.6 bits (205),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 71/223 (32%), Positives = 109/223 (49%), Gaps = 5/223 (2%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
            +FQP  R      +   I+  +L G    G  LP ER LAE  GV+R ++R+ + +L Q 
Sbjct  1    MFQPVARTSASGAVFDQISVKVLAGELAAGEALPSERKLAEAFGVSRPAVREAIQKLAQA  60

Query  70   GLIEVRHGSGSVVRDPEGLTHPAVV-EALVRKLGPDFLV--ELLEIRAALGPLIGRLAAA  126
            GL+EVR G  + VRD      P ++ + LVR   PD  V   +LE R  +GP I  LAA 
Sbjct  61   GLVEVRQGESTSVRDFRRQAGPELLPQLLVRDGVPDLTVVRSVLETRELMGPQIAVLAAR  120

Query  127  RSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR  186
            R + E A  L  A++ +   +     Q   LA++ V++ S  + A  L++  +  A+   
Sbjct  121  RISAESARELDTAVDQLGATEDPVELQDRALAFWDVVVDSADSIAFRLIFNSLRAAYEPA  180

Query  187  EHALTGAYDDADPVLTDL-RAINGAVLAGDPAAAAATVEAYLN  228
              AL      A+   TDL R +  A+ + D + A A+    L+
Sbjct  181  MTALASVM-VAEVGQTDLYRKLASAITSHDESTAEASAAQLLH  222


>gi|254471459|ref|ZP_05084861.1| pyruvate dehydrogenase complex repressor [Pseudovibrio sp. JE062]
 gi|211959605|gb|EEA94803.1| pyruvate dehydrogenase complex repressor [Pseudovibrio sp. JE062]
Length=261

 Score = 83.6 bits (205),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 57/169 (34%), Positives = 86/169 (51%), Gaps = 8/169 (4%)

Query  9    SVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQ  68
            ++F+P D   V + +   I   IL GV   G+ LP ERD++ER+GV+R  +R+ L RL+ 
Sbjct  6    NLFEPIDHDTVVDSVTEQIEGLILAGVLKEGTKLPSERDISERMGVSRPKVREALKRLED  65

Query  69   MGLIEVRHGSGSVVRDP--EGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAA  126
              LI +RHG GS +  P       PA++  + R        + LE R        RLAA 
Sbjct  66   SNLITIRHGEGSFIA-PLISAAMSPALINLISRNQTA--FYDYLEYRRVQEGFAARLAAE  122

Query  127  RSTPEDAEALCAALEVVQQADTAA---ARQAADLAYFRVLIHSTRNRAL  172
            R+T  D E L A LE ++ A   A   A +  D+A+   ++ ++ N  L
Sbjct  123  RATKLDLERLEAILENLRDAQARADDIASKKNDIAFHLAIVDASHNAML  171


>gi|15607726|ref|NP_215100.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|15839988|ref|NP_335025.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|31791768|ref|NP_854261.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=240

 Score = 83.6 bits (205),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 72/224 (33%), Positives = 103/224 (46%), Gaps = 9/224 (4%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
             QP  R+ V E +   IA  +L G  PPG  LP ER LAE LGV+R ++R+ L RL   G
Sbjct  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62

Query  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVR------KLGPDFLVELLEIRAALGPLIGRLA  124
            L+EVR G  + VRD       A ++ L R      +L    +  +LE R    P +  LA
Sbjct  63   LVEVRQGDVTTVRD---FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELA  119

Query  125  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184
            A R+ PE AE L  +L  +   +     Q   L ++  ++ S  +    L+Y     A+ 
Sbjct  120  AERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYE  179

Query  185  GREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLN  228
                ALT     A    +D R +  A+ +GDP  A    +  L 
Sbjct  180  PTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLE  223


>gi|295695141|ref|YP_003588379.1| GntR domain-containing protein [Bacillus tusciae DSM 2912]
 gi|295410743|gb|ADG05235.1| GntR domain protein [Bacillus tusciae DSM 2912]
Length=236

 Score = 83.6 bits (205),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 57/177 (33%), Positives = 92/177 (52%), Gaps = 5/177 (2%)

Query  10   VFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQM  69
            +FQ    ++V E I   I + +++     G  +P E  LAE LGV+R+SLR+ L  L  +
Sbjct  1    MFQSVRHKKVFEEILDQIKEMLVNEQLSVGQRIPSEIRLAETLGVSRSSLREALRILDVL  60

Query  70   GLIEVRHGSGSVVR--DPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAAR  127
            G+IE + G G+V+R  DPE L +   +  LV   G    V+L E R A+      LAAAR
Sbjct  61   GIIEAKTGEGTVIRKADPENLKN---LMTLVAVSGGIDTVDLYEARCAIEVEAAMLAAAR  117

Query  128  STPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184
             T ED   +  AL+ + +   A A   +D  + R ++ +++N  L ++  ++    G
Sbjct  118  HTAEDLRTMERALKEMDECRDAEASAHSDYLFHRAIVRASQNDVLKMMMSFISDLLG  174


>gi|17545797|ref|NP_519199.1| transcriptional regulatory DNA-binding transcription regulator 
protein [Ralstonia solanacearum GMI1000]
 gi|17428091|emb|CAD14780.1| probable transcriptional regulatory dna-binding transcription 
regulator protein [Ralstonia solanacearum GMI1000]
Length=255

 Score = 83.2 bits (204),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 71/229 (32%), Positives = 106/229 (47%), Gaps = 11/229 (4%)

Query  17   QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH  76
            Q + E +   I   I  G   PG  LP E +L   LGV+RT +R+ ++RLQ   LIE RH
Sbjct  15   QSLAEAVVDHIGQRIASGSLRPGDKLPTESELMGMLGVSRTVVREAISRLQAKALIETRH  74

Query  77   GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL  136
            G GS V +P   T    ++        D L  +LE+R AL      LAA R+TPED   L
Sbjct  75   GIGSFVLEPRAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL  130

Query  137  CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH------A  189
              AL+  +Q   + +  AA DL +   + H+TRN+    +   +      R         
Sbjct  131  RNALDAFEQDQASGSDSAASDLRFHLAIAHATRNQHFVAVLDQLGKTLIPRSRIAPTQVG  190

Query  190  LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
                 +    V  + R+I  A+   DP AA A +  +L+ S  R+ +++
Sbjct  191  YLNTPESRATVSREHRSIYEAISRQDPEAARAAMRMHLSNSRERLRRAH  239


>gi|254254451|ref|ZP_04947768.1| regulatory protein GntR [Burkholderia dolosa AUO158]
 gi|124899096|gb|EAY70939.1| regulatory protein GntR [Burkholderia dolosa AUO158]
Length=253

 Score = 83.2 bits (204),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 76/242 (32%), Positives = 112/242 (47%), Gaps = 26/242 (10%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
             QP   +R+ ++IA  + + I  G FPPGS LPPER+LAE+ GV+RTS+R+ L  L+  G
Sbjct  3    IQPIQNRRLYQQIADKLGEMIESGTFPPGSYLPPERELAEQFGVSRTSVREALIALEVRG  62

Query  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVE-------------------LLE  111
             + VR G G  VR PE    PAV     RK+ P  +VE                   LL+
Sbjct  63   RVSVRVGDGVKVRYPEAAAAPAVDRD--RKVAPFTIVEIDPELGIALDLDTEIPPFALLQ  120

Query  112  IRAALGPLIGRLAAARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLI-HSTRNR  170
             R  + P    LAA   +    E +  A    Q+ + + +        F + I  ++ N 
Sbjct  121  ARRLIEPEAASLAAKHGSDAQIEGIHDAFLRNQEDNRSGSLTHPGDRLFHIRIAEASDNP  180

Query  171  ALGLLYR-WVEHAFGGREHALTGAYDDAD-PVLTDL--RAINGAVLAGDPAAAAATVEAY  226
            A  L+ +  + H +      L   Y   D P  ++L  RAI  A+ A DP AA   +  +
Sbjct  181  AYALMIKQLLAHKYDPMFQRLQSLYMPNDMPHRSELEHRAILDAIRARDPEAARRAMAGH  240

Query  227  LN  228
            L+
Sbjct  241  LD  242


>gi|299067046|emb|CBJ38242.1| putative transcriptional regulatory dna-binding transcription 
regulator protein [Ralstonia solanacearum CMR15]
Length=255

 Score = 83.2 bits (204),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 71/229 (32%), Positives = 106/229 (47%), Gaps = 11/229 (4%)

Query  17   QRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRH  76
            Q + E +   I   I  G   PG  LP E +L   LGV+RT +R+ ++RLQ   LIE RH
Sbjct  15   QSLAEAVVDHIGQRIASGSLRPGDKLPTESELMGTLGVSRTVVREAISRLQAKALIETRH  74

Query  77   GSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL  136
            G GS V +P   T    ++        D L  +LE+R AL      LAA R+TPED   L
Sbjct  75   GIGSFVLEPRAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDLTGL  130

Query  137  CAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH------A  189
             +AL+  +Q   +    AA DL +   + H+TRN+    +   +      R         
Sbjct  131  RSALDAFEQDQASGNDSAASDLRFHLAIAHATRNQHFVAVLDQLGKTLIPRSRIAPTQVG  190

Query  190  LTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
                 +    V  + R+I  A+   DP AA A +  +L+ S  R+ +++
Sbjct  191  YLNTPESRATVSREHRSIYEAISRQDPEAARAAMRMHLSNSRERLRRAH  239


>gi|297157740|gb|ADI07452.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
Length=257

 Score = 83.2 bits (204),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 76/245 (32%), Positives = 118/245 (49%), Gaps = 26/245 (10%)

Query  6    NQSSVFQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLAR  65
            N +++ +P  R+     +A  + D + +G   PG+ LP ER LAE L V R+S+R  L+ 
Sbjct  9    NFTALLRPVVRESSVSEVAKRLLDHLSEGHLKPGTRLPAERQLAEALNVARSSVRGALSA  68

Query  66   LQQMGLIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAA  125
            L  +G+IE+R GSGS VR       P  +   +  LG     +L+E+R  +  +  RLAA
Sbjct  69   LDVLGIIEIRPGSGSYVRAGTSEFLPRAINWGL-MLGQRRTHDLVEVRTFMEAMSARLAA  127

Query  126  ARSTPEDAEALCAALEVVQQ----------ADTAAARQAADLAYFRVL---IHSTRNRAL  172
             R+   D E L A LE +++          AD A   + A +A   VL   +HS R+   
Sbjct  128  ERAEDTDVERLEAHLERMREAGGDVTAFIDADIAFHLETATIARNTVLSDILHSIRS---  184

Query  173  GLLYRWVEHAFGGREHALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASAL  232
             LL  W+E A G  E  + G   +   +L  +R        GDP AA   +  ++  ++ 
Sbjct  185  -LLQVWMERA-GDIEGTVAGTLKEHGAILQAIR-------DGDPQAAERAMAEHMQCASE  235

Query  233  RMVKS  237
            R+  S
Sbjct  236  RLWSS  240


>gi|237816546|ref|ZP_04595538.1| GntR family transcriptional regulator [Brucella abortus str. 
2308 A]
 gi|237787359|gb|EEP61575.1| GntR family transcriptional regulator [Brucella abortus str. 
2308 A]
Length=270

 Score = 82.8 bits (203),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 73/227 (33%), Positives = 106/227 (47%), Gaps = 22/227 (9%)

Query  21   ERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGS  80
            E IA  I   ILDG F  GS LP ER+L+   GV+R  +R+ L++L+  GL+E R GSG 
Sbjct  42   EEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGSGV  101

Query  81   VVRDPEGLT----HPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL  136
             V D          P VVE          L +L+E+  A+     R+AA   TPED + +
Sbjct  102  FVIDESNQKAFRIQPLVVEE------AQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQI  155

Query  137  CAALEVVQQADTA-AARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD  195
              AL  ++ A  +   R   D A+   ++ +T N     L + +E  +G R H +  A  
Sbjct  156  KRALIGLEYAIISDKLRDEEDYAFHDAIVIATHNPHFIALCKHLE--YGAR-HVIRQART  212

Query  196  DADPVLTDL--------RAINGAVLAGDPAAAAATVEAYLNASALRM  234
            +    L D+        +AI  A+  GDP  A    E +L  +  RM
Sbjct  213  NTRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM  259


>gi|206590434|emb|CAQ37396.1| transcriptional regulatory dna-binding protein [Ralstonia solanacearum 
MolK2]
Length=255

 Score = 82.8 bits (203),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 74/232 (32%), Positives = 108/232 (47%), Gaps = 19/232 (8%)

Query  22   RIATTIADAILD--------GVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIE  73
            R A ++A+A++D        G   PG  LP E +L   LGV+RT +R+ ++RLQ   LIE
Sbjct  12   RRAQSLAEAVVDHVRQRIASGALRPGDKLPTESELMAALGVSRTVVREAISRLQAKALIE  71

Query  74   VRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDA  133
             RHG GS V +P   T    ++        D L  +LE+R AL      LAA R+TPED 
Sbjct  72   TRHGIGSFVLEPPAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDL  127

Query  134  EALCAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH----  188
             AL  AL+  +Q        AA DL +   + HSTRN     +   +      R      
Sbjct  128  AALRNALDTFEQDQAQGNDSAASDLRFHLAIAHSTRNPHFVAVLDQLGKTLIPRSQIAPP  187

Query  189  --ALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
                    +    V  + R+I  A+   DP AA A +  +L+ S  R+ +++
Sbjct  188  QVGYLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH  239


>gi|126435337|ref|YP_001071028.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126235137|gb|ABN98537.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
Length=239

 Score = 82.8 bits (203),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 72/214 (34%), Positives = 105/214 (50%), Gaps = 5/214 (2%)

Query  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70
             QP +R+ V E +   I   +L G   PG TLP ER LAE LGV+R ++R+ L RL   G
Sbjct  3    LQPVNRRSVPEDVFDQIVTEVLSGQMQPGQTLPSERRLAEVLGVSRPAIREALKRLAGAG  62

Query  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVRKLGP-DFLV--ELLEIRAALGPLIGRLAAAR  127
            LIEVR G  + VRD        ++  L+ + G  D  V   +LE R   GP +  LAA R
Sbjct  63   LIEVRQGDATTVRDFRRTAGLDLLPRLLMRGGELDLTVVRSILETRLHNGPKVAELAAER  122

Query  128  STPEDAEALCAALE-VVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGR  186
              P  A  L   ++ ++ + D  AA+Q A L ++  ++    + A  L+Y  +   +   
Sbjct  123  GGPSLAGRLDETVDALLTETDPVAAQQLA-LTFWDHVVDGADSIAFRLMYNTLRATYEPA  181

Query  187  EHALTGAYDDADPVLTDLRAINGAVLAGDPAAAA  220
              AL     +        RA+  A++A DPA AA
Sbjct  182  LPALAAMMAEEVGRPDAYRAVTAAIVARDPAGAA  215


>gi|304407106|ref|ZP_07388760.1| GntR domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304344093|gb|EFM09933.1| GntR domain protein [Paenibacillus curdlanolyticus YK9]
Length=236

 Score = 82.8 bits (203),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 70/230 (31%), Positives = 109/230 (48%), Gaps = 8/230 (3%)

Query  15   DRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEV  74
            D++   E I   I   I  G    G  LP  ++++ER GV R+++R+ L+ L+ MGLIE+
Sbjct  7    DKRNHYEEITEQIKALIGSGKLKVGDKLPSTKEMSERFGVGRSTMREALSGLKAMGLIEI  66

Query  75   RHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAE  134
            R G G  V   + L  P+   A +R  G   L ELLE R AL      +AAA+ +  D E
Sbjct  67   RQGGGCRVVREQPLAEPSSALASMRLDGTSLL-ELLEARQALEISNASIAAAKRSESDIE  125

Query  135  AL-CAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGG-----REH  188
             L     ++V+ A   AA +  D+A+ + + H+T N  L  L+  +           R  
Sbjct  126  QLRLIVADMVEAAGDDAAGERLDVAFHQAIAHATGNSILVQLFDTITQQTESAIRDVRRA  185

Query  189  ALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
             +      AD +L +   I  A+  GD A A + +  +L   A R+V  +
Sbjct  186  EMYANRAVADQLLCEHNIICEAIATGDEALAGSAMREHLQHVA-RIVNKH  234


>gi|297250074|ref|ZP_06933775.1| GntR family transcriptional regulator [Brucella abortus bv. 5 
str. B3196]
 gi|297173943|gb|EFH33307.1| GntR family transcriptional regulator [Brucella abortus bv. 5 
str. B3196]
Length=255

 Score = 82.8 bits (203),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 73/227 (33%), Positives = 106/227 (47%), Gaps = 22/227 (9%)

Query  21   ERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGS  80
            E IA  I   ILDG F  GS LP ER+L+   GV+R  +R+ L++L+  GL+E R GSG 
Sbjct  27   EEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGSGV  86

Query  81   VVRDPEGLT----HPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL  136
             V D          P VVE          L +L+E+  A+     R+AA   TPED + +
Sbjct  87   FVIDESNQKAFRIQPLVVEE------AQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQI  140

Query  137  CAALEVVQQADTA-AARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD  195
              AL  ++ A  +   R   D A+   ++ +T N     L + +E  +G R H +  A  
Sbjct  141  KRALIGLEYAIISDKLRDEEDYAFHDAIVIATHNPHFIALCKHLE--YGAR-HVIRQART  197

Query  196  DADPVLTDL--------RAINGAVLAGDPAAAAATVEAYLNASALRM  234
            +    L D+        +AI  A+  GDP  A    E +L  +  RM
Sbjct  198  NTRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM  244


>gi|62316983|ref|YP_222836.1| GntR family transcriptional regulator [Brucella abortus bv. 1 
str. 9-941]
 gi|83268978|ref|YP_418269.1| GntR family regulatory protein [Brucella melitensis biovar Abortus 
2308]
 gi|189022255|ref|YP_001931996.1| Bacterial regulatory protein, GntR family [Brucella abortus S19]
 11 more sequence titles
 Length=246

 Score = 82.8 bits (203),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 73/227 (33%), Positives = 106/227 (47%), Gaps = 22/227 (9%)

Query  21   ERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSGS  80
            E IA  I   ILDG F  GS LP ER+L+   GV+R  +R+ L++L+  GL+E R GSG 
Sbjct  18   EEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGSGV  77

Query  81   VVRDPEGLT----HPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDAEAL  136
             V D          P VVE          L +L+E+  A+     R+AA   TPED + +
Sbjct  78   FVIDESNQKAFRIQPLVVEE------AQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQI  131

Query  137  CAALEVVQQADTA-AARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFGGREHALTGAYD  195
              AL  ++ A  +   R   D A+   ++ +T N     L + +E  +G R H +  A  
Sbjct  132  KRALIGLEYAIISDKLRDEEDYAFHDAIVIATHNPHFIALCKHLE--YGAR-HVIRQART  188

Query  196  DADPVLTDL--------RAINGAVLAGDPAAAAATVEAYLNASALRM  234
            +    L D+        +AI  A+  GDP  A    E +L  +  RM
Sbjct  189  NTRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRM  235


>gi|83749283|ref|ZP_00946282.1| Transcriptional regulator, GntR family [Ralstonia solanacearum 
UW551]
 gi|207743575|ref|YP_002259967.1| transcriptional regulatory dna-binding protein [Ralstonia solanacearum 
IPO1609]
 gi|83724064|gb|EAP71243.1| Transcriptional regulator, GntR family [Ralstonia solanacearum 
UW551]
 gi|206594974|emb|CAQ61901.1| transcriptional regulatory dna-binding protein [Ralstonia solanacearum 
IPO1609]
Length=255

 Score = 82.4 bits (202),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 74/232 (32%), Positives = 108/232 (47%), Gaps = 19/232 (8%)

Query  22   RIATTIADAILD--------GVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIE  73
            R A ++A+A++D        G   PG  LP E +L   LGV+RT +R+ ++RLQ   LIE
Sbjct  12   RRAQSLAEAVVDHVRQRIASGALRPGDKLPTESELMAALGVSRTVVREAISRLQAKALIE  71

Query  74   VRHGSGSVVRDPEGLTHPAVVEALVRKLGPDFLVELLEIRAALGPLIGRLAAARSTPEDA  133
             RHG GS V +P   T    ++        D L  +LE+R AL      LAA R+TPED 
Sbjct  72   TRHGIGSFVLEPPAET---AIQLGAASTLQDILA-MLELRVALETECAGLAAQRATPEDL  127

Query  134  EALCAALEVVQQADTAAARQAA-DLAYFRVLIHSTRNRALGLLYRWVEHAFGGREH----  188
             AL  AL+  +Q        AA DL +   + HSTRN     +   +      R      
Sbjct  128  AALRNALDTFEQDQAEGNDSAASDLRFHLAIAHSTRNPHFVAVLDQLGKTLIPRSRIAPP  187

Query  189  --ALTGAYDDADPVLTDLRAINGAVLAGDPAAAAATVEAYLNASALRMVKSY  238
                    +    V  + R+I  A+   DP AA A +  +L+ S  R+ +++
Sbjct  188  QVGYLNTPESRATVSREHRSIYEAISRKDPEAARAAMRMHLSNSRERLRRAH  239



Lambda     K      H
   0.319    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 333756066840




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40