BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0497
Length=310
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607638|ref|NP_215011.1| transmembrane protein [Mycobacteriu... 607 7e-172
gi|289446042|ref|ZP_06435786.1| conserved membrane protein [Myco... 606 1e-171
gi|340625524|ref|YP_004743976.1| hypothetical protein MCAN_04981... 601 4e-170
gi|298523976|ref|ZP_07011385.1| conserved hypothetical protein [... 600 7e-170
gi|289756573|ref|ZP_06515951.1| LOW QUALITY PROTEIN: transmembra... 347 1e-93
gi|183980847|ref|YP_001849138.1| transmembrane protein [Mycobact... 296 2e-78
gi|118619659|ref|YP_907991.1| transmembrane protein [Mycobacteri... 296 3e-78
gi|254821071|ref|ZP_05226072.1| hypothetical protein MintA_14137... 285 7e-75
gi|254777092|ref|ZP_05218608.1| hypothetical protein MaviaA2_208... 281 1e-73
gi|41410086|ref|NP_962922.1| hypothetical protein MAP3988 [Mycob... 281 1e-73
gi|296168152|ref|ZP_06850173.1| transmembrane protein [Mycobacte... 280 1e-73
gi|118466176|ref|YP_883784.1| hypothetical protein MAV_4655 [Myc... 280 2e-73
gi|240171901|ref|ZP_04750560.1| transmembrane protein [Mycobacte... 274 1e-71
gi|336460457|gb|EGO39353.1| hypothetical protein MAPs_40600 [Myc... 274 1e-71
gi|342859001|ref|ZP_08715655.1| hypothetical protein MCOL_08993 ... 264 1e-68
gi|289748990|ref|ZP_06508368.1| transmembrane protein [Mycobacte... 264 1e-68
gi|15828314|ref|NP_302577.1| hypothetical protein ML2433 [Mycoba... 253 4e-65
gi|333989132|ref|YP_004521746.1| transmembrane protein [Mycobact... 231 8e-59
gi|467047|gb|AAA17231.1| B2168_C2_209 [Mycobacterium leprae] 177 1e-42
gi|126433269|ref|YP_001068960.1| hypothetical protein Mjls_0658 ... 157 2e-36
gi|108797645|ref|YP_637842.1| hypothetical protein Mmcs_0665 [My... 156 5e-36
gi|145220684|ref|YP_001131362.1| hypothetical protein Mflv_0078 ... 137 1e-30
gi|118470488|ref|YP_885343.1| hypothetical protein MSMEG_0940 [M... 128 1e-27
gi|120401849|ref|YP_951678.1| hypothetical protein Mvan_0834 [My... 117 2e-24
gi|229490533|ref|ZP_04384371.1| conserved hypothetical protein [... 87.4 2e-15
gi|467074|gb|AAA17258.1| B2168_C1_166 [Mycobacterium leprae] 87.4 2e-15
gi|312141107|ref|YP_004008443.1| integral membrane protein [Rhod... 82.0 1e-13
gi|325674083|ref|ZP_08153773.1| hypothetical protein HMPREF0724_... 81.6 1e-13
gi|111019057|ref|YP_702029.1| hypothetical protein RHA1_ro02064 ... 80.9 3e-13
gi|226361150|ref|YP_002778928.1| hypothetical protein ROP_17360 ... 80.5 3e-13
gi|226305114|ref|YP_002765072.1| hypothetical protein RER_16250 ... 77.4 3e-12
gi|343925950|ref|ZP_08765465.1| hypothetical protein GOALK_050_0... 75.5 1e-11
gi|54027154|ref|YP_121396.1| hypothetical protein nfa51800 [Noca... 73.9 3e-11
gi|262200996|ref|YP_003272204.1| hypothetical protein Gbro_1000 ... 69.7 6e-10
gi|169631091|ref|YP_001704740.1| hypothetical protein MAB_4012c ... 68.2 2e-09
gi|325002471|ref|ZP_08123583.1| hypothetical protein PseP1_27082... 65.9 8e-09
gi|319949794|ref|ZP_08023818.1| hypothetical protein ES5_09967 [... 64.7 2e-08
gi|326383058|ref|ZP_08204747.1| hypothetical protein SCNU_08976 ... 64.7 2e-08
gi|227832120|ref|YP_002833827.1| hypothetical protein cauri_0290... 62.0 1e-07
gi|302523822|ref|ZP_07276164.1| predicted protein [Streptomyces ... 60.1 5e-07
gi|259508532|ref|ZP_05751432.1| membrane protein [Corynebacteriu... 58.9 1e-06
gi|296138390|ref|YP_003645633.1| hypothetical protein Tpau_0657 ... 57.0 4e-06
gi|260579345|ref|ZP_05847227.1| membrane protein [Corynebacteriu... 55.8 8e-06
gi|68537001|ref|YP_251706.1| hypothetical protein jk1907 [Coryne... 55.8 9e-06
gi|256380730|ref|YP_003104390.1| hypothetical protein Amir_6747 ... 54.7 2e-05
gi|331699378|ref|YP_004335617.1| hypothetical protein Psed_5636 ... 53.9 4e-05
gi|334564440|ref|ZP_08517431.1| hypothetical protein CbovD2_0768... 53.1 5e-05
gi|284992959|ref|YP_003411513.1| hypothetical protein Gobs_4594 ... 46.2 0.007
gi|296394044|ref|YP_003658928.1| hypothetical protein Srot_1636 ... 46.2 0.007
gi|337289926|ref|YP_004628947.1| hypothetical protein CULC22_003... 45.8 0.008
>gi|15607638|ref|NP_215011.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15839889|ref|NP_334926.1| hypothetical protein MT0517 [Mycobacterium tuberculosis CDC1551]
gi|31791678|ref|NP_854171.1| transmembrane protein [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=310
Score = 607 bits (1565), Expect = 7e-172, Method: Compositional matrix adjust.
Identities = 310/310 (100%), Positives = 310/310 (100%), Gaps = 0/310 (0%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD
Sbjct 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
Query 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP
Sbjct 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
Query 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE
Sbjct 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
Query 181 AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA
Sbjct 181 AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
Query 241 VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT
Sbjct 241 VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
Query 301 LGPLALLQSG 310
LGPLALLQSG
Sbjct 301 LGPLALLQSG 310
>gi|289446042|ref|ZP_06435786.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
gi|289419000|gb|EFD16201.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
Length=310
Score = 606 bits (1563), Expect = 1e-171, Method: Compositional matrix adjust.
Identities = 309/310 (99%), Positives = 310/310 (100%), Gaps = 0/310 (0%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD
Sbjct 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
Query 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP
Sbjct 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
Query 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE
Sbjct 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
Query 181 AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA
Sbjct 181 AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
Query 241 VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
VAFGAGLFIAFDQLWRWNSIV+LVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT
Sbjct 241 VAFGAGLFIAFDQLWRWNSIVSLVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
Query 301 LGPLALLQSG 310
LGPLALLQSG
Sbjct 301 LGPLALLQSG 310
>gi|340625524|ref|YP_004743976.1| hypothetical protein MCAN_04981 [Mycobacterium canettii CIPT
140010059]
gi|340003714|emb|CCC42838.1| putative conserved transmembrane protein [Mycobacterium canettii
CIPT 140010059]
Length=310
Score = 601 bits (1550), Expect = 4e-170, Method: Compositional matrix adjust.
Identities = 308/310 (99%), Positives = 308/310 (99%), Gaps = 0/310 (0%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD
Sbjct 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
Query 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP
Sbjct 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
Query 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE
Sbjct 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
Query 181 AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
A T VREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA
Sbjct 181 AATGVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
Query 241 VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT
Sbjct 241 VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
Query 301 LGPLALLQSG 310
LGPLALLQSG
Sbjct 301 LGPLALLQSG 310
>gi|298523976|ref|ZP_07011385.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298493770|gb|EFI29064.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=356
Score = 600 bits (1548), Expect = 7e-170, Method: Compositional matrix adjust.
Identities = 307/310 (99%), Positives = 308/310 (99%), Gaps = 0/310 (0%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD
Sbjct 1 MTGPHPETESSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDD 60
Query 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP
Sbjct 61 HHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPP 120
Query 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE
Sbjct 121 QDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAE 180
Query 181 AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA
Sbjct 181 AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA 240
Query 241 VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT
Sbjct 241 VAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALIT 300
Query 301 LGPLALLQSG 310
LGPLAL+ G
Sbjct 301 LGPLALVAIG 310
>gi|289756573|ref|ZP_06515951.1| LOW QUALITY PROTEIN: transmembrane protein [Mycobacterium tuberculosis
T85]
gi|289712137|gb|EFD76149.1| LOW QUALITY PROTEIN: transmembrane protein [Mycobacterium tuberculosis
T85]
Length=234
Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/195 (99%), Positives = 193/195 (99%), Gaps = 0/195 (0%)
Query 116 PKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTE 175
P PPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTE
Sbjct 40 PSPPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTE 99
Query 176 VGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVL 235
VGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVL
Sbjct 100 VGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGALVVL 159
Query 236 QSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAV 295
QSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAV
Sbjct 160 QSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAV 219
Query 296 GALITLGPLALLQSG 310
GALITLGPLALLQSG
Sbjct 220 GALITLGPLALLQSG 234
>gi|183980847|ref|YP_001849138.1| transmembrane protein [Mycobacterium marinum M]
gi|183174173|gb|ACC39283.1| conserved transmembrane protein [Mycobacterium marinum M]
Length=354
Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 210/363 (58%), Positives = 233/363 (65%), Gaps = 62/363 (17%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETE + +QISVAELLAR G GAPA RRRRRRRGD+D+ITVAELTGEIPIIR
Sbjct 1 MTGPHSETEDT--KQISVAELLARNGNVGAPAVTRRRRRRRGDTDSITVAELTGEIPIIR 58
Query 59 DDHH--HAGPDAHA---------SQSPAANGRVQVGEAAPQSPAEPVA----------EQ 97
DDHH + P A A SQ+ NGRV+V E AP S +P + Q
Sbjct 59 DDHHDERSAPSAPAETTETVAPTSQAKPGNGRVEVDEPAPASRVQPESVVAPAEATEPPQ 118
Query 98 VAEEPT-----RTVYWSQPEPRWPKSPPQDRRESGPELSEYPRPLRHT-HSDRAPAGPPS 151
AEEP R YWS+PEPRWPKS P R ++GPE SEYPRPLRHT SD A GP
Sbjct 119 AAEEPAAGQAGRAAYWSEPEPRWPKSEPITRTKAGPERSEYPRPLRHTGDSDAAGQGP-- 176
Query 152 GAEHMSPDPVEHYPDLWVDVLDTEVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGA 211
GAE MSPDPV HY D VDV D+E AE+EV ++ R A+ + + G +
Sbjct 177 GAEDMSPDPVGHYGDTSVDVSDSE-----AESEVEDSAYVRSFLQASEGISDQALYGGQS 231
Query 212 AEARVARRALDVVPT------------------------LWRGALVVLQSILAVAFGAGL 247
VARR + P+ LWRG LVVLQSILAV FGAGL
Sbjct 232 LADEVARRRGESSPSTFDEEEAEADEEQGARPLSGKLAALWRGTLVVLQSILAVVFGAGL 291
Query 248 FIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLALL 307
FIAFDQLWRWNSIVALVLSV+VILGLVV VR VRKTEDI STLIAVAVGALITLGPLALL
Sbjct 292 FIAFDQLWRWNSIVALVLSVLVILGLVVGVRVVRKTEDIGSTLIAVAVGALITLGPLALL 351
Query 308 QSG 310
QSG
Sbjct 352 QSG 354
>gi|118619659|ref|YP_907991.1| transmembrane protein [Mycobacterium ulcerans Agy99]
gi|118571769|gb|ABL06520.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99]
Length=354
Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 210/363 (58%), Positives = 233/363 (65%), Gaps = 62/363 (17%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETE + +QISVAELLAR G GAPA RRRRRRRGD+D+ITVAELTGEIPIIR
Sbjct 1 MTGPHSETEDT--KQISVAELLARNGNVGAPAVTRRRRRRRGDTDSITVAELTGEIPIIR 58
Query 59 DDHH--HAGPDAHA---------SQSPAANGRVQVGEAAPQSPAEPVA----------EQ 97
DDHH + P A A SQ+ NGRV+V E AP S +P + Q
Sbjct 59 DDHHDERSAPSAPAETTETVAPTSQAKPGNGRVEVDEPAPASRVQPESVVAPAEATEPPQ 118
Query 98 VAEEPT-----RTVYWSQPEPRWPKSPPQDRRESGPELSEYPRPLRHT-HSDRAPAGPPS 151
AEEP R YWS+PEPRWPKS P R ++GPE SEYPRPLRHT SD A GP
Sbjct 119 AAEEPAAGQAGRAAYWSEPEPRWPKSEPITRTKAGPERSEYPRPLRHTGDSDAAGQGP-- 176
Query 152 GAEHMSPDPVEHYPDLWVDVLDTEVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGA 211
GAE MSPDPV HY D VDV D+E AE+EV ++ R A+ + + G +
Sbjct 177 GAEDMSPDPVGHYGDTSVDVSDSE-----AESEVEDSAYVRSFLQASEGISDQALYGGQS 231
Query 212 AEARVARRALDVVPT------------------------LWRGALVVLQSILAVAFGAGL 247
VARR + P+ LWRG LVVLQSILAV FGAGL
Sbjct 232 LADEVARRRGESSPSTFDEEEAEADEEQAARPLSGKLAALWRGTLVVLQSILAVVFGAGL 291
Query 248 FIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLALL 307
FIAFDQLWRWNSIVALVLSV+VILGLVV VR VRKTEDI STLIAVAVGALITLGPLALL
Sbjct 292 FIAFDQLWRWNSIVALVLSVLVILGLVVGVRVVRKTEDIGSTLIAVAVGALITLGPLALL 351
Query 308 QSG 310
QSG
Sbjct 352 QSG 354
>gi|254821071|ref|ZP_05226072.1| hypothetical protein MintA_14137 [Mycobacterium intracellulare
ATCC 13950]
Length=318
Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 202/333 (61%), Positives = 222/333 (67%), Gaps = 38/333 (11%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETES G R ISVAELLAR G GAPA RRRRRRRGDSDA+TVAELTGEIP++R
Sbjct 1 MTGPHSETESPGTRPISVAELLARNGTIGAPAVTRRRRRRRGDSDAVTVAELTGEIPVVR 60
Query 59 DDH--HHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVA-EQVAEEPTRTVYWSQPEPRW 115
DD H D + PA SPAE VA E V E+ +T YWS+PEPRW
Sbjct 61 DDDDAEHGATDTIEAVKPA------------DSPAEDVAAEPVTEDKPKTAYWSEPEPRW 108
Query 116 PKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTE 175
PKSPPQ +R GPE S YPRPL + A PSGAE MSPDP++HY D+ VDV+D++
Sbjct 109 PKSPPQPKRVPGPERSAYPRPLANG---TARPEEPSGAEDMSPDPMDHYADIPVDVMDSD 165
Query 176 VGEAEAETE----VREAQPGRGERHAA------AAAAGTDVEG-------DGAAEARVAR 218
V EAE E VR G AA AG+ G D AE AR
Sbjct 166 VREAEPALEDSAYVRSYLRSSGSLDEDLDEDGDAARAGSLDTGLLGLEDEDAHAEGADAR 225
Query 219 RALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVR 278
A + LWR A+VVLQSILAVAFG GLF+AFDQLWRWNSIVALVLSV+VILGLVV VR
Sbjct 226 PAEGRLDALWRSAVVVLQSILAVAFGGGLFVAFDQLWRWNSIVALVLSVLVILGLVVGVR 285
Query 279 AVRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
VRKTEDIASTLIAVAVGALITLGPLAL LQSG
Sbjct 286 VVRKTEDIASTLIAVAVGALITLGPLALSLQSG 318
>gi|254777092|ref|ZP_05218608.1| hypothetical protein MaviaA2_20834 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=322
Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 196/332 (60%), Positives = 218/332 (66%), Gaps = 32/332 (9%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETES G R ISVAELLAR G GAPA RRRRRRRGDSDA+TVAELTGEIP+IR
Sbjct 1 MTGPHSETESPGTRPISVAELLARNGTIGAPAVTRRRRRRRGDSDAVTVAELTGEIPVIR 60
Query 59 DDHHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKS 118
DD P A + V AAP P AE VAE+ +T YWS+PEPRWPKS
Sbjct 61 DDEPDDQPGATDT----------VDTAAPAQPVAEPAEPVAEDEPKTPYWSEPEPRWPKS 110
Query 119 PPQDRRESGPELSEYPRPLRHTHSDRAPAGP-PSGAEHMSPDPVEHYPDLWVDVLDTEVG 177
PPQ +R GPE S YPRPL G SGAE MSPDP++HY D+ VDV+D+EV
Sbjct 111 PPQPKRAPGPERSAYPRPLPEPGPSANGTGRRSSGAEDMSPDPMDHYADIPVDVMDSEVR 170
Query 178 EAEAETEVREAQPGRGERHAAAAAAG--------------TDVEGDGA----AEARVARR 219
EAE E + +A TD + D A +A A
Sbjct 171 EAEPALEDSAYVRSYLQSDSALDDDLGEDLDDDHADAATLTDEDLDAAHLEDEDAEAAHP 230
Query 220 ALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRA 279
A + +WRG++VVLQSILAVAFGAGLF+AFDQLWRWNSIVALVLSV+VILGLVV VR
Sbjct 231 APGRLEAIWRGSVVVLQSILAVAFGAGLFVAFDQLWRWNSIVALVLSVLVILGLVVGVRV 290
Query 280 VRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
VRKTEDIASTLIAVAVGALITLGPLAL LQSG
Sbjct 291 VRKTEDIASTLIAVAVGALITLGPLALSLQSG 322
>gi|41410086|ref|NP_962922.1| hypothetical protein MAP3988 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398919|gb|AAS06538.1| hypothetical protein MAP_3988 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=322
Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 200/332 (61%), Positives = 221/332 (67%), Gaps = 32/332 (9%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETES G R ISVAELLAR G GAPA RRRRRRRGDSDA+TVAELTGEIP+IR
Sbjct 1 MTGPHSETESPGTRPISVAELLARNGTIGAPAVTRRRRRRRGDSDAVTVAELTGEIPVIR 60
Query 59 DDHHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKS 118
DD P A + V AAP P AE VAE+ +T YWS+PEPRWPKS
Sbjct 61 DDEPDDQPGATDT----------VDTAAPAQPVAESAEPVAEDEPKTPYWSEPEPRWPKS 110
Query 119 PPQDRRESGPELSEYPRPLRHTHSDRAPAGP-PSGAEHMSPDPVEHYPDLWVDVLDTEVG 177
PPQ +R GPE S YPRPL G SGAE MSPDP++HY D+ VDV+D+EV
Sbjct 111 PPQPKRAPGPERSAYPRPLPEPGPSANGTGRRSSGAEDMSPDPMDHYADIPVDVMDSEVR 170
Query 178 EAEAETE----VRE----------AQPGRGERHAAAAAAGTDVEGDGA----AEARVARR 219
EAE E VR + A AA TD + D A +A A
Sbjct 171 EAEPALEDSAYVRSYLQSDSALDDDLDEDLDDDHADAATLTDEDLDAAHLEDEDAEAAHP 230
Query 220 ALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRA 279
A + +WRG++VVLQSILAVAFGAGLF+AFDQLWRWNSIVALVLSV+VILGLVV VR
Sbjct 231 APGRLEAIWRGSVVVLQSILAVAFGAGLFVAFDQLWRWNSIVALVLSVLVILGLVVGVRV 290
Query 280 VRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
VRKTEDIASTLIAVAVGALITLGPLAL LQSG
Sbjct 291 VRKTEDIASTLIAVAVGALITLGPLALSLQSG 322
>gi|296168152|ref|ZP_06850173.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896830|gb|EFG76459.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=313
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 195/327 (60%), Positives = 219/327 (67%), Gaps = 31/327 (9%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETES G R ISVAELLA+ G GAPA RRRRRRRGDSDA+TVAELTGEIP+IR
Sbjct 1 MTGPHSETESPGTRPISVAELLAKNGTIGAPAVTRRRRRRRGDSDAVTVAELTGEIPVIR 60
Query 59 DDHHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKS 118
DD A+ P A GEAAP EQ ++ + YWSQPEPRWPKS
Sbjct 61 DDDEDPRTAGQATAEPVA------GEAAP--------EQRTDDQPASPYWSQPEPRWPKS 106
Query 119 PPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGE 178
P Q ++ GPE S YPRPL H + SGAE M+PDP++HY DL VDV+D+EV +
Sbjct 107 PSQPKKAPGPERSAYPRPLSHGEAGETNGAGQSGAEGMNPDPLDHYTDLPVDVMDSEVRD 166
Query 179 AEAETE----VR---EAQPGRGERHAAAAAAGTDVEGDG-AAEARVARRALDV------V 224
AE E VR + + AAG + D AEA A A DV +
Sbjct 167 AEPALEDSAYVRSYLQTDADEADEDIDPLAAGYQPDEDHVGAEAGRADAATDVHAGPGRL 226
Query 225 PTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTE 284
LWRG+LVV QSILAVAFGAGLF+AFD+LWRWNSIVALVLSV+VILGLVV VR VRKTE
Sbjct 227 EALWRGSLVVFQSILAVAFGAGLFVAFDELWRWNSIVALVLSVLVILGLVVGVRVVRKTE 286
Query 285 DIASTLIAVAVGALITLGPLAL-LQSG 310
DIASTLIAVAVGALITLGPLAL LQSG
Sbjct 287 DIASTLIAVAVGALITLGPLALSLQSG 313
>gi|118466176|ref|YP_883784.1| hypothetical protein MAV_4655 [Mycobacterium avium 104]
gi|118167463|gb|ABK68360.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=322
Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 200/332 (61%), Positives = 221/332 (67%), Gaps = 32/332 (9%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETES G R ISVAELLAR G GAPA RRRRRRRGDSDA+TVAELTGEIP+IR
Sbjct 1 MTGPHSETESPGTRPISVAELLARNGTIGAPAVTRRRRRRRGDSDAVTVAELTGEIPVIR 60
Query 59 DDHHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKS 118
DD P A + V AAP P AE VAE+ +T YWS+PEPRWPKS
Sbjct 61 DDEPDDQPGATDT----------VDTAAPAQPVAEPAEPVAEDEPKTPYWSEPEPRWPKS 110
Query 119 PPQDRRESGPELSEYPRPLRHTHSDRAPAGP-PSGAEHMSPDPVEHYPDLWVDVLDTEVG 177
PPQ +R GPE S YPRPL G SGAE MSPDP++HY D+ VDV+D+EV
Sbjct 111 PPQPKRAPGPERSAYPRPLPEPGPSANGTGRRSSGAEDMSPDPMDHYADIPVDVMDSEVR 170
Query 178 EAEAETE----VRE----------AQPGRGERHAAAAAAGTDVEGDGA----AEARVARR 219
EAE E VR + A AA TD + D A +A A
Sbjct 171 EAEPALEDSAYVRSYLQSDSALDDDLDEDLDDDHADAATLTDEDLDAAHLEDEDAEAAHP 230
Query 220 ALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRA 279
A + +WRG++VVLQSILAVAFGAGLF+AFDQLWRWNSIVALVLSV+VILGLVV VR
Sbjct 231 APGRLEAIWRGSVVVLQSILAVAFGAGLFVAFDQLWRWNSIVALVLSVLVILGLVVGVRV 290
Query 280 VRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
VRKTEDIASTLIAVAVGALITLGPLAL LQSG
Sbjct 291 VRKTEDIASTLIAVAVGALITLGPLALSLQSG 322
>gi|240171901|ref|ZP_04750560.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=344
Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 191/349 (55%), Positives = 213/349 (62%), Gaps = 44/349 (12%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH +TE + +QISVAELLAR G GAPA RRRRRRRGDSD++TVAELTGEIPIIR
Sbjct 1 MTGPHSDTEDT--KQISVAELLARNGTIGAPAVTRRRRRRRGDSDSVTVAELTGEIPIIR 58
Query 59 DDHHHAG-------PDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTV---YW 108
+D P SQ RV+V E A SP EP YW
Sbjct 59 EDRRGKAETPAPTVPAEPPSQPKPGKPRVEVAEPARPSPPEPEPVAAEPAAEEPAMARYW 118
Query 109 SQPEPRWPKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLW 168
S+PEPRWP+S P RR+SGPE SEYPRPLRHT + SGAEHMSPDPV HY D
Sbjct 119 SEPEPRWPRSEPIARRKSGPERSEYPRPLRHTEEGDT-SEQQSGAEHMSPDPVGHYVDSS 177
Query 169 VDVLDTEVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPT-- 226
V+ +D V EAE + E R H AA + G + VARR + P
Sbjct 178 VEAIDVAVDEAEPVAD--ETAYARSYLHDVDGAAERTLFGGQSLADEVARRRGEAPPAVF 235
Query 227 ------------------------LWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVA 262
LWRG +VVLQSI+AV FGAGLFIAFDQLWRWNSIVA
Sbjct 236 DAERLDSDRADKTGSGRAPGALVALWRGTVVVLQSIMAVIFGAGLFIAFDQLWRWNSIVA 295
Query 263 LVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
LVLSV+VILGLVV+VR VRKTEDIASTLIAVAVGALIT GPL L LQ+G
Sbjct 296 LVLSVLVILGLVVAVRVVRKTEDIASTLIAVAVGALITWGPLVLSLQTG 344
>gi|336460457|gb|EGO39353.1| hypothetical protein MAPs_40600 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=328
Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 200/338 (60%), Positives = 221/338 (66%), Gaps = 38/338 (11%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETES G R ISVAELLAR G GAPA RRRRRRRGDSDA+TVAELTGEIP+IR
Sbjct 1 MTGPHSETESPGTRPISVAELLARNGTIGAPAVTRRRRRRRGDSDAVTVAELTGEIPVIR 60
Query 59 DDHHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKS 118
DD P A + V AAP P AE VAE+ +T YWS+PEPRWPKS
Sbjct 61 DDEPDDQPGATDT----------VDTAAPAQPVAESAEPVAEDEPKTPYWSEPEPRWPKS 110
Query 119 PPQDRRESGPEL------SEYPRPLRHTHSDRAPAGP-PSGAEHMSPDPVEHYPDLWVDV 171
PPQ +R GPE S YPRPL G SGAE MSPDP++HY D+ VDV
Sbjct 111 PPQPKRAPGPERAPGPERSAYPRPLPEPGPSANGTGRRSSGAEDMSPDPMDHYADIPVDV 170
Query 172 LDTEVGEAEAETE----VRE----------AQPGRGERHAAAAAAGTDVEGDGA----AE 213
+D+EV EAE E VR + A AA TD + D A +
Sbjct 171 MDSEVREAEPALEDSAYVRSYLQSDSALDDDLDEDLDDDHADAATLTDEDLDAAHLEDED 230
Query 214 ARVARRALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGL 273
A A A + +WRG++VVLQSILAVAFGAGLF+AFDQLWRWNSIVALVLSV+VILGL
Sbjct 231 AEAAHPAPGRLEAIWRGSVVVLQSILAVAFGAGLFVAFDQLWRWNSIVALVLSVLVILGL 290
Query 274 VVSVRAVRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
VV VR VRKTEDIASTLIAVAVGALITLGPLAL LQSG
Sbjct 291 VVGVRVVRKTEDIASTLIAVAVGALITLGPLALSLQSG 328
>gi|342859001|ref|ZP_08715655.1| hypothetical protein MCOL_08993 [Mycobacterium colombiense CECT
3035]
gi|342133242|gb|EGT86445.1| hypothetical protein MCOL_08993 [Mycobacterium colombiense CECT
3035]
Length=330
Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 191/337 (57%), Positives = 222/337 (66%), Gaps = 34/337 (10%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA--RRRRRRRGDSDAITVAELTGEIPIIR 58
MTGPH ETES G R ISVAELLAR G GAPA RRRRRRRGDSD++TVAELTG++P+IR
Sbjct 1 MTGPHSETESPGTRPISVAELLARNGTIGAPAVTRRRRRRRGDSDSVTVAELTGDLPVIR 60
Query 59 DDHHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPT-----RTVYWSQPEP 113
DD GP+A+ + + + +AAP PAEPVA Q A +P + YWS+PEP
Sbjct 61 DDDDEPGPNANETTT-----TIDAVDAAP--PAEPVARQAAADPVTKAAPKAPYWSEPEP 113
Query 114 RWPKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPP----SGAEHMSPDPVEHYPDLWV 169
RWPKSPPQ +R GPE SEYPRPL S + A SGAE MS DP++HY D+ V
Sbjct 114 RWPKSPPQPKRAPGPERSEYPRPLPEAGSSGSAANGTGQAGSGAEEMSFDPLDHYADIPV 173
Query 170 DVLDTEVGEAEAETE--------VREAQPGRGERHAAAAAAGT-------DVEGDGAAEA 214
DV+D+EV EAE E +R E + A G ++E A
Sbjct 174 DVMDSEVREAEPAVEDSAYVRSFLRSGDDEDDEDGSGPLATGVLGDDEHLELEDRHADAD 233
Query 215 RVARRALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLV 274
A +WRG +VVLQS+LAVAFG GLF+AFDQLWRWNS+VALVLSV+VILGLV
Sbjct 234 ADAHAEPGRFDAVWRGGVVVLQSMLAVAFGGGLFVAFDQLWRWNSLVALVLSVLVILGLV 293
Query 275 VSVRAVRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
VR VRKTEDIASTLIAVAVGALITLGPLAL LQSG
Sbjct 294 AGVRVVRKTEDIASTLIAVAVGALITLGPLALSLQSG 330
>gi|289748990|ref|ZP_06508368.1| transmembrane protein [Mycobacterium tuberculosis T92]
gi|289689577|gb|EFD57006.1| transmembrane protein [Mycobacterium tuberculosis T92]
Length=142
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)
Query 169 VDVLDTEVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLW 228
+DVLD EVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLW
Sbjct 1 MDVLDPEVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLW 60
Query 229 RGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIAS 288
RGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIAS
Sbjct 61 RGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIAS 120
Query 289 TLIAVAVGALITLGPLALLQSG 310
TLIAVAVGALITLGPLALLQSG
Sbjct 121 TLIAVAVGALITLGPLALLQSG 142
>gi|15828314|ref|NP_302577.1| hypothetical protein ML2433 [Mycobacterium leprae TN]
gi|221230791|ref|YP_002504207.1| hypothetical protein MLBr_02433 [Mycobacterium leprae Br4923]
gi|13638524|sp|P54580.2|Y2433_MYCLE RecName: Full=Uncharacterized protein ML2433
gi|13094007|emb|CAC31950.1| conserved membrane protein [Mycobacterium leprae]
gi|219933898|emb|CAR72532.1| conserved membrane protein [Mycobacterium leprae Br4923]
Length=355
Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 193/360 (54%), Positives = 213/360 (60%), Gaps = 55/360 (15%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA-RRRRRRRGDSDAITVAELTGEIPIIRD 59
MTGPH +TES R ISVAELLAR G GAPA RRRRRR DSDA+TVAELT +IPII D
Sbjct 1 MTGPHNDTESPHARPISVAELLARNGTIGAPAVSRRRRRRTDSDAVTVAELTCDIPIIHD 60
Query 60 DH----HHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVY-------W 108
DH H A AH AN V+V E A QSP EPV E + EP + W
Sbjct 61 DHADEQHLAATHAHR-----ANIGVRVVEPAAQSPLEPVCEGIVAEPPVDDHGHVPPGCW 115
Query 109 SQPEPRWPKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPS------GAEHMSPDPVE 162
S PEPRWPKSPP +G + S RPL H R P P S AE MSPDPVE
Sbjct 116 SAPEPRWPKSPPLTHLRTGLQRSACSRPLPHLGDVRHPVAPDSIAQKQSDAEGMSPDPVE 175
Query 163 HYPDLWVDVLDTEVGEAE----------------------AETEVREAQPGRGERHAAAA 200
+ D+ VDV+ +EV AE T E RG+ HAA
Sbjct 176 PFADIPVDVMGSEVRAAELVAEESAYARYNLQMSAGALFSGHTLTNELAERRGDEHAAGG 235
Query 201 --AAGTDVEGDG-------AAEARVARRALDVVPTLWRGALVVLQSILAVAFGAGLFIAF 251
A G D++ D A AR LWRG+L+VLQSILAV FGAGLF+AF
Sbjct 236 LLAVGIDLDEDHLDLHTDLAGITSPARGWQSRFEALWRGSLIVLQSILAVVFGAGLFVAF 295
Query 252 DQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLAL-LQSG 310
DQLWRWNSIVALVLSV+VILGLVV VR VR+TEDIASTLIAV VGALITLGPLAL LQSG
Sbjct 296 DQLWRWNSIVALVLSVLVILGLVVGVRVVRRTEDIASTLIAVVVGALITLGPLALSLQSG 355
>gi|333989132|ref|YP_004521746.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333485100|gb|AEF34492.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=344
Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 174/344 (51%), Positives = 206/344 (60%), Gaps = 41/344 (11%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAP--ARRRRRRRGDSDAITVAELTGEIPIIR 58
MT P P+ R ISVAELLA+ G G+P RRRRRRG++DA+TVAELTGEIPIIR
Sbjct 1 MTEPKPDPRDVETRPISVAELLAKNGTIGSPPVTGRRRRRRGNADAVTVAELTGEIPIIR 60
Query 59 DDHHHA-------GPDAHASQSPAANGRVQVGEAA----PQSPAEPVAEQVAEEPTRTVY 107
D+ PD + AA+G + +G A SPA EPT+
Sbjct 61 DEDGPPAPAAAAESPDDDETSDTAASGALPIGPAPGFVDEDSPATGPRPAERAEPTQR-- 118
Query 108 WSQPEPRWPKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPP--------SGAEHMSPD 159
S PEPRWPKSPPQ R GP+ S YPRP+R + A G P SGAE M PD
Sbjct 119 -SAPEPRWPKSPPQPPRTGGPQQSPYPRPMRRSDVPAAGNGRPAPADRSTGSGAERMRPD 177
Query 160 PVEHYPDLWVDVLDTEVGEAEA----ETEVRE--AQPGRGER----HAAAAAAGTDV--- 206
PV+ Y D+ +DV+DT+V EA+ VR ++ G ER A +AGTD+
Sbjct 178 PVDTYTDIELDVMDTDVREADLAVGDSAYVRSVLSKAGSAERPVRQDFEADSAGTDLADT 237
Query 207 ----EGDGAAEARVARRALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVA 262
+ GA + A P + G LVVLQSILAVAFG GLFIAFDQLWRWNSIVA
Sbjct 238 AGPADAAGAVASEPADDDYVGRPGVVGGLLVVLQSILAVAFGGGLFIAFDQLWRWNSIVA 297
Query 263 LVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLAL 306
LVL+V+V LGLV +V+AVRKT DI STLIAVAVG LITLGPLAL
Sbjct 298 LVLTVLVTLGLVAAVQAVRKTVDIVSTLIAVAVGLLITLGPLAL 341
>gi|467047|gb|AAA17231.1| B2168_C2_209 [Mycobacterium leprae]
Length=261
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/241 (54%), Positives = 142/241 (59%), Gaps = 38/241 (15%)
Query 108 WSQPEPRWPKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPS------GAEHMSPDPV 161
WS PEPRWPKSPP +G + S RPL H R P P S AE MSPDPV
Sbjct 21 WSAPEPRWPKSPPLTHLRTGLQRSACSRPLPHLGDVRHPVAPDSIAQKQSDAEGMSPDPV 80
Query 162 EHYPDLWVDVLDTEVGEAE----------------------AETEVREAQPGRGERHAAA 199
E + D+ VDV+ +EV AE T E RG+ HAA
Sbjct 81 EPFADIPVDVMGSEVRAAELVAEESAYARYNLQMSAGALFSGHTLTNELAERRGDEHAAG 140
Query 200 A--AAGTDVEGDG-------AAEARVARRALDVVPTLWRGALVVLQSILAVAFGAGLFIA 250
A G D++ D A AR LWRG+L+VLQSILAV FGAGLF+A
Sbjct 141 GLLAVGIDLDEDHLDLHTDLAGITSPARGWQSRFEALWRGSLIVLQSILAVVFGAGLFVA 200
Query 251 FDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLAL-LQS 309
FDQLWRWNSIVALVLSV+VILGLVV VR VR+TEDIASTLIAV VGALITLGPLAL LQS
Sbjct 201 FDQLWRWNSIVALVLSVLVILGLVVGVRVVRRTEDIASTLIAVVVGALITLGPLALSLQS 260
Query 310 G 310
G
Sbjct 261 G 261
>gi|126433269|ref|YP_001068960.1| hypothetical protein Mjls_0658 [Mycobacterium sp. JLS]
gi|126233069|gb|ABN96469.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=324
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 147/351 (42%), Positives = 178/351 (51%), Gaps = 74/351 (21%)
Query 5 HPETESSGNRQISVAELLARQGVTGAP--ARRRRRRRGDSDAITVAELTGEIPIIRDDHH 62
P+ SS R ISVAELLA+ G GAP RRRRRRG++DA+TVAELTGEIPI+ D
Sbjct 3 EPDNSSSSTRPISVAELLAKNGTIGAPPVGGRRRRRRGNADAVTVAELTGEIPIVTDRAS 62
Query 63 HAGPD-AHASQSPAANGRVQ----VGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPK 117
+ A + NG Q V E AP+ EP +VAE T + + P
Sbjct 63 DTREERADETARIPVNGATQEQETVTEPAPEDVVEPEVTEVAEFETEELDDVDVDEDIPL 122
Query 118 SPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVG 177
QD E GAE MSPDP+ + D+LD+++
Sbjct 123 E--QDTVEQDT----------------------VGAEDMSPDPLLDDDEEPADLLDSDLD 158
Query 178 E-AEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDV------------- 223
E A +E + + R +A + G G +ARR D
Sbjct 159 EPARERSETDDDELPSYLRSSAGP-----LFGGGTVADDLARRGKDADTATIDEHDDEDE 213
Query 224 ------------------------VPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNS 259
+ RGA +V Q I+AVAFGAGLFIAFDQLW+WN+
Sbjct 214 LDEHDLRDDTRDDLRDDDVEAGGRMSAFLRGAWIVGQCIIAVAFGAGLFIAFDQLWKWNN 273
Query 260 IVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLALLQSG 310
IVALVLSV+VILGLVV VR VRKTEDI STLIAVAVGAL+TLGPLALLQSG
Sbjct 274 IVALVLSVLVILGLVVGVRVVRKTEDIGSTLIAVAVGALVTLGPLALLQSG 324
>gi|108797645|ref|YP_637842.1| hypothetical protein Mmcs_0665 [Mycobacterium sp. MCS]
gi|119866732|ref|YP_936684.1| hypothetical protein Mkms_0678 [Mycobacterium sp. KMS]
gi|108768064|gb|ABG06786.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692821|gb|ABL89894.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=323
Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 148/354 (42%), Positives = 177/354 (50%), Gaps = 75/354 (21%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAP--ARRRRRRRGDSDAITVAELTGEIPIIR 58
MT P SS R ISVAELLA+ G GAP RRRRRRG++DA+TVAELTGEIPI+
Sbjct 1 MTEPD---NSSSTRPISVAELLAKNGTIGAPPVGGRRRRRRGNADAVTVAELTGEIPIVT 57
Query 59 DDHHHAGPD-AHASQSPAANGRVQ----VGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEP 113
D + A + NG Q V E AP+ EP +VAE T +
Sbjct 58 DRASDTREERADETARIPVNGATQEQETVTEPAPEDVVEPEVTEVAEFETEEPDDVDVDE 117
Query 114 RWPKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLD 173
P QD E GAE MSPDP+ + D+LD
Sbjct 118 DIPLE--QDTVEQDT----------------------VGAEDMSPDPLLDDDEEPADLLD 153
Query 174 TEVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDV---------- 223
+++ E E +Q E + ++ + G G +ARR D
Sbjct 154 SDLDEPARE----RSQTDDDELPSYLRSSAGPLFGGGTVADDLARRGKDADTATIDEHDD 209
Query 224 ---------------------------VPTLWRGALVVLQSILAVAFGAGLFIAFDQLWR 256
+ RGA +V Q I+AVAFGAGLFIAFDQLW+
Sbjct 210 EDELDEHDLRDDTRDDLRDDDVEAGGRMSAFLRGAWIVGQCIIAVAFGAGLFIAFDQLWK 269
Query 257 WNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLALLQSG 310
WN+IVALVLSV+VILGLVV VR VRKTEDI STLIAVAVGAL+TLGPLALLQSG
Sbjct 270 WNNIVALVLSVLVILGLVVGVRVVRKTEDIGSTLIAVAVGALVTLGPLALLQSG 323
>gi|145220684|ref|YP_001131362.1| hypothetical protein Mflv_0078 [Mycobacterium gilvum PYR-GCK]
gi|315442364|ref|YP_004075243.1| hypothetical protein Mspyr1_07060 [Mycobacterium sp. Spyr1]
gi|145213170|gb|ABP42574.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315260667|gb|ADT97408.1| hypothetical protein Mspyr1_07060 [Mycobacterium sp. Spyr1]
Length=433
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 77/88 (88%), Gaps = 4/88 (4%)
Query 223 VVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRK 282
+V LW ++ QS++AV FGAGLF+AFDQLW+WN+I+ALVLSV+VILGLVV VR VRK
Sbjct 350 LVSALW----IIGQSVIAVVFGAGLFVAFDQLWKWNNIIALVLSVLVILGLVVGVRLVRK 405
Query 283 TEDIASTLIAVAVGALITLGPLALLQSG 310
TEDI STLIAVAVGAL+TLGPLALLQSG
Sbjct 406 TEDIGSTLIAVAVGALVTLGPLALLQSG 433
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/55 (66%), Positives = 40/55 (73%), Gaps = 4/55 (7%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAP--ARRRRRRRGDSDAITVAELTGE 53
MTG E +S R ISVAELLA+ G GAP RRRRRRG+SDA+TVAELTGE
Sbjct 1 MTGT--EDSNSSTRPISVAELLAKNGTIGAPPVGGRRRRRRGNSDAVTVAELTGE 53
>gi|118470488|ref|YP_885343.1| hypothetical protein MSMEG_0940 [Mycobacterium smegmatis str.
MC2 155]
gi|118171775|gb|ABK72671.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=356
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/83 (75%), Positives = 70/83 (85%), Gaps = 0/83 (0%)
Query 227 LWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDI 286
L RG VV Q ++AVAFGAGLF+AFDQLW+WN+IVALVL V+VILGL VR VRKTEDI
Sbjct 273 LVRGLWVVAQCVIAVAFGAGLFVAFDQLWKWNTIVALVLGVLVILGLAGGVRVVRKTEDI 332
Query 287 ASTLIAVAVGALITLGPLALLQS 309
STL AVAVGAL+T GPLALLQ+
Sbjct 333 GSTLTAVAVGALVTFGPLALLQA 355
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/185 (38%), Positives = 88/185 (48%), Gaps = 32/185 (17%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAP--ARRRRRRRGDSDAITVAELTGEIPIIR 58
MTGP E + +R ISVAELLA+ G GAP RRRRRRG++DA+TVAELTGEIP+I
Sbjct 1 MTGP--EDSQTPSRPISVAELLAKNGTIGAPPVGGRRRRRRGNADAVTVAELTGEIPVIT 58
Query 59 DDHHHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVA--EQVAE---EPTRT-------- 105
DD + + V EA P P A E+ E P R
Sbjct 59 DDDSAPQTSRRQRERDTSLEETTVVEAVPAREEAPQAAPEKTPETEPRPARNGATPREAA 118
Query 106 VYWSQPEPRWPKSPPQD--------RRESGPELSEY-PRPLRHTHS----DRAPAGPPSG 152
V QP P + + RE PE E+ PRP R+ + + P+G +G
Sbjct 119 VVADQPAPDAGAARDAEADYDAHLKTREIDPEPVEFRPRPRRNQFASGTREYTPSG--TG 176
Query 153 AEHMS 157
AE MS
Sbjct 177 AEQMS 181
>gi|120401849|ref|YP_951678.1| hypothetical protein Mvan_0834 [Mycobacterium vanbaalenii PYR-1]
gi|119954667|gb|ABM11672.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=377
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/93 (75%), Positives = 77/93 (83%), Gaps = 4/93 (4%)
Query 218 RRALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSV 277
RR V LW +V Q I+AV FGAGLF+AFDQLW+WN+I+ALVLSV+VILGLVV V
Sbjct 289 RRMSSFVHGLW----IVGQCIIAVIFGAGLFVAFDQLWKWNNIIALVLSVLVILGLVVGV 344
Query 278 RAVRKTEDIASTLIAVAVGALITLGPLALLQSG 310
R VRKTEDI STLIAVAVGAL+TLGPLALLQSG
Sbjct 345 RVVRKTEDIGSTLIAVAVGALVTLGPLALLQSG 377
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/218 (33%), Positives = 95/218 (44%), Gaps = 42/218 (19%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAP--ARRRRRRRGDSDAITVAELTGEIPIIR 58
MTG +S R ISVAELLA+ G G+P RRRRRRG++DA+TVAELTGEIPI+R
Sbjct 1 MTGSD---DSYSTRPISVAELLAKNGTIGSPPVGGRRRRRRGNADAVTVAELTGEIPIVR 57
Query 59 DDH------HHAGPDAHASQSPAANGRVQVGEAAPQSP----AEPVAEQVAEEPTRTVYW 108
D P+ Q+ NG V EAA P EP + V E
Sbjct 58 PDEPTPVEEQPGEPEPEPEQATPTNGAVD--EAASVEPDGELVEPAEDTVTAEDENGETE 115
Query 109 SQPEPRWPKSPPQDRRESGPELSEYPRPLRHTHSDRAPAGPPS---------------GA 153
+ E P + E ++EY + ++ P+ A
Sbjct 116 PEAESAIEAEPELEDDEYAKAVAEYAAHMEQRGTEPEETAEPARRFGFGRFGRKSSTVDA 175
Query 154 EHMSPDPVEHYPDLWVDVLDTEV----GEAEAETEVRE 187
E +PDPV+ D LD++V E ETE+ +
Sbjct 176 EQWTPDPVDE------DTLDSDVEIDTDEDLTETEIED 207
>gi|229490533|ref|ZP_04384371.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229322353|gb|EEN88136.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=372
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/152 (41%), Positives = 90/152 (60%), Gaps = 9/152 (5%)
Query 162 EHYPDLWVDVLDTEVGEAE--AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARR 219
E +L + D +VGEAE A ++ +A ++A A +DVE + AAE R
Sbjct 227 EESTELIDKIADADVGEAESTAVVDLVKAPAVDDGAKKSSAVAESDVEAESAAEETGERN 286
Query 220 ALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRA 279
++ W A++ Q ++A+ G +F F++LW VALVL+++VI+GLV VR
Sbjct 287 SIR----EW--AVLAGQVVVALIVGGAMFKGFEKLWDMLPWVALVLALIVIVGLVAVVRV 340
Query 280 VRKTEDIASTLIAVAVGALITLGPLA-LLQSG 310
+RKT+DI S +IAV VG ++TLGPLA LL SG
Sbjct 341 LRKTDDITSFVIAVVVGMIVTLGPLAFLLTSG 372
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/104 (41%), Positives = 56/104 (54%), Gaps = 9/104 (8%)
Query 13 NRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDDHHHAGPDAHASQ 72
++QISVAELL R G +R RRRRG + I+VAELTGEIPI+R A + + +
Sbjct 5 SQQISVAELLKRNG-QSVESRGGRRRRGVAGGISVAELTGEIPIVRQSGSRAAAEPESGE 63
Query 73 SPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWP 116
A +AP +PAE VAE T ++P P+ P
Sbjct 64 PAAQPEAAAPENSAPSAPAEAVAE--------TAKSAEPAPKVP 99
>gi|467074|gb|AAA17258.1| B2168_C1_166 [Mycobacterium leprae]
Length=118
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/107 (61%), Positives = 70/107 (66%), Gaps = 10/107 (9%)
Query 1 MTGPHPETESSGNRQISVAELLARQGVTGAPA-RRRRRRRGDSDAITVAELTGEIPIIRD 59
MTGPH +TES R ISVAELLAR G GAPA RRRRRR DSDA+TVAELT +IPII D
Sbjct 1 MTGPHNDTESPHARPISVAELLARNGTIGAPAVSRRRRRRTDSDAVTVAELTCDIPIIHD 60
Query 60 DH----HHAGPDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEP 102
DH H A AH AN V+V E A QSP EPV E + EP
Sbjct 61 DHADEQHLAATHAH-----RANIGVRVVEPAAQSPLEPVCEGIVAEP 102
>gi|312141107|ref|YP_004008443.1| integral membrane protein [Rhodococcus equi 103S]
gi|311890446|emb|CBH49764.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=371
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/79 (51%), Positives = 57/79 (73%), Gaps = 0/79 (0%)
Query 231 ALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
A+++ Q +AV GA +F F++LW +VAL+L+V+VI+GLV VR +R+T+DIAS +
Sbjct 291 AVLLGQGAVAVVAGALMFKGFEKLWDMLPMVALILAVLVIVGLVAMVRILRRTDDIASLV 350
Query 291 IAVAVGALITLGPLALLQS 309
IAV G +TLGPLA L S
Sbjct 351 IAVVAGVFVTLGPLAFLLS 369
>gi|325674083|ref|ZP_08153773.1| hypothetical protein HMPREF0724_11555 [Rhodococcus equi ATCC
33707]
gi|325555348|gb|EGD25020.1| hypothetical protein HMPREF0724_11555 [Rhodococcus equi ATCC
33707]
Length=366
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/79 (51%), Positives = 57/79 (73%), Gaps = 0/79 (0%)
Query 231 ALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
A+++ Q +AV GA +F F++LW +VAL+L+V+VI+GLV VR +R+T+DIAS +
Sbjct 286 AVLLGQGAVAVVAGALMFKGFEKLWDMLPMVALILAVLVIVGLVAMVRILRRTDDIASLV 345
Query 291 IAVAVGALITLGPLALLQS 309
IAV G +TLGPLA L S
Sbjct 346 IAVVAGVFVTLGPLAFLLS 364
Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 45/122 (37%), Positives = 56/122 (46%), Gaps = 20/122 (16%)
Query 8 TESSGNRQ-ISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIR-------- 58
TE G+ Q ISVAELLAR G RRRRG I+VAELTGE +R
Sbjct 2 TEPEGDSQAISVAELLARNGQRVGAGGGGRRRRGVKGGISVAELTGEFQAVRAATPETPD 61
Query 59 -DDHHHAGPDAHA-------SQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQ 110
+ PD A +++PAA V G AP++PA V EP + +
Sbjct 62 AETPETQAPDTQAPEATTPETKAPAAEAPVD-GAPAPETPA--VESTAVAEPAKKPESEK 118
Query 111 PE 112
PE
Sbjct 119 PE 120
>gi|111019057|ref|YP_702029.1| hypothetical protein RHA1_ro02064 [Rhodococcus jostii RHA1]
gi|110818587|gb|ABG93871.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=413
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/77 (50%), Positives = 57/77 (75%), Gaps = 0/77 (0%)
Query 231 ALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
A+++ Q ++AV GA LF F++LW VAL+L+++VI+GLV VR +R+T+DI S +
Sbjct 333 AVLIGQGVVAVIAGALLFKGFEKLWDVFPWVALILALLVIVGLVAMVRVLRRTDDITSFV 392
Query 291 IAVAVGALITLGPLALL 307
IAV VG ++TLGPLA +
Sbjct 393 IAVVVGMIVTLGPLAFM 409
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/47 (58%), Positives = 34/47 (73%), Gaps = 1/47 (2%)
Query 13 NRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRD 59
++QISV+ELL R G +R RRRRG I+VAELTGEIP++RD
Sbjct 5 SQQISVSELLKRNG-QQVESRGGRRRRGVKGGISVAELTGEIPVVRD 50
>gi|226361150|ref|YP_002778928.1| hypothetical protein ROP_17360 [Rhodococcus opacus B4]
gi|226239635|dbj|BAH49983.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=403
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/77 (50%), Positives = 57/77 (75%), Gaps = 0/77 (0%)
Query 231 ALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
A+++ Q ++AV GA LF F++LW VAL+L+++VI+GLV VR +R+T+DI S +
Sbjct 323 AVLIGQGVVAVIAGALLFKGFEKLWDVFPWVALILALLVIVGLVAMVRILRRTDDITSFV 382
Query 291 IAVAVGALITLGPLALL 307
IAV VG ++TLGPLA +
Sbjct 383 IAVVVGMIVTLGPLAFM 399
Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/47 (58%), Positives = 35/47 (75%), Gaps = 1/47 (2%)
Query 13 NRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRD 59
++QISV+ELL R G +R RRRRG + I+VAELTGEIP++RD
Sbjct 5 SQQISVSELLKRNG-QQVESRGGRRRRGVAGGISVAELTGEIPVVRD 50
>gi|226305114|ref|YP_002765072.1| hypothetical protein RER_16250 [Rhodococcus erythropolis PR4]
gi|226184229|dbj|BAH32333.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
Length=372
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/152 (40%), Positives = 89/152 (59%), Gaps = 9/152 (5%)
Query 162 EHYPDLWVDVLDTEVGEAE--AETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARR 219
E +L + D + GEAE A ++ +A ++A A +DVE + AAE R
Sbjct 227 EESTELIDKIADADAGEAESTAVVDLVKAPAVDDSAKKSSAVAESDVEAEPAAEEAGERN 286
Query 220 ALDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRA 279
++ W A++ Q ++A+ G +F F++LW VALVL+++VI+GLV VR
Sbjct 287 SI----REW--AVLAGQVVVALIVGGAMFKGFEKLWDMLPWVALVLALIVIVGLVAVVRV 340
Query 280 VRKTEDIASTLIAVAVGALITLGPLA-LLQSG 310
+RKT+DI S +IAV VG ++TLGPLA LL SG
Sbjct 341 LRKTDDITSFVIAVVVGMIVTLGPLAFLLTSG 372
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/53 (55%), Positives = 35/53 (67%), Gaps = 1/53 (1%)
Query 13 NRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDDHHHAG 65
++QISVAELL R G +R RRRRG + I+VAELTGEIPI+R A
Sbjct 5 SQQISVAELLKRNG-QSVESRGGRRRRGVAGGISVAELTGEIPIVRQSGSRAA 56
>gi|343925950|ref|ZP_08765465.1| hypothetical protein GOALK_050_02460 [Gordonia alkanivorans NBRC
16433]
gi|343764301|dbj|GAA12391.1| hypothetical protein GOALK_050_02460 [Gordonia alkanivorans NBRC
16433]
Length=595
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/76 (49%), Positives = 54/76 (72%), Gaps = 0/76 (0%)
Query 232 LVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLI 291
L+ Q+++ + G GLF F +LWRWN ALVL+V+VI G+V VR+T+D+ +TL+
Sbjct 518 LIFGQAVVGLVVGIGLFWGFTELWRWNPYFALVLAVLVIFGIVTLSHVVRRTKDLTTTLL 577
Query 292 AVAVGALITLGPLALL 307
A+ VG L+T+GPL LL
Sbjct 578 ALGVGLLVTIGPLVLL 593
Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 52/139 (38%), Positives = 65/139 (47%), Gaps = 23/139 (16%)
Query 13 NRQISVAELLARQGVTGAPA-----RRRRRRRGDSDAITVAELTGEIPIIRD------DH 61
+R ISV+ELLAR G R RRR G +++V+ELTGEIP I D D
Sbjct 9 SRPISVSELLARSQAAGGTTPTRRDGRGRRRAGRDGSVSVSELTGEIPKITDAPATQADE 68
Query 62 HHAGPDAHAS--QSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQP---EPRWP 116
A D +AS PA +V APQ+ V EQ EP T +P EP P
Sbjct 69 KPASADENASAQTEPAVVEASEV--EAPQAKTAEV-EQPEAEPAETASTPEPSASEPSAP 125
Query 117 KSPPQDRRESGPELSEYPR 135
+S + SGP +PR
Sbjct 126 ESSARTESPSGP----FPR 140
>gi|54027154|ref|YP_121396.1| hypothetical protein nfa51800 [Nocardia farcinica IFM 10152]
gi|54018662|dbj|BAD60032.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=548
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/74 (52%), Positives = 50/74 (68%), Gaps = 0/74 (0%)
Query 236 QSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAV 295
QS A G +F F+++W VAL L+++VILGLV VR +R+T+DI ST+IAV V
Sbjct 473 QSTGAAVAGMLMFKGFERMWEMLPWVALALAMIVILGLVALVRILRRTDDILSTVIAVVV 532
Query 296 GALITLGPLALLQS 309
G +TLGPLA L S
Sbjct 533 GIFVTLGPLAFLLS 546
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 54/157 (35%), Positives = 73/157 (47%), Gaps = 21/157 (13%)
Query 10 SSGNRQISVAELLARQGVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDDHHHAGPDAH 69
S ++Q+SVAELLAR G A RRRR I+VAELTG++P+IR+ H+ A
Sbjct 2 SEESKQLSVAELLARNGREAASGGGRRRRA--GRGISVAELTGDLPVIREGGSHSAHSAA 59
Query 70 ASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPPQDRRESGPE 129
++PA G P S P E+ + P PEP P SGP
Sbjct 60 DDEAPAEPAAFDSGGFVPSSFDSPAPERDSFAP--------PEPA--TELPTHSPISGP- 108
Query 130 LSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPD 166
++ Y PL AP P+G+ H +P E P+
Sbjct 109 ITRY-NPL-------APPSEPTGSRHGAPAASEPAPE 137
>gi|262200996|ref|YP_003272204.1| hypothetical protein Gbro_1000 [Gordonia bronchialis DSM 43247]
gi|262084343|gb|ACY20311.1| hypothetical protein Gbro_1000 [Gordonia bronchialis DSM 43247]
Length=429
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/78 (48%), Positives = 54/78 (70%), Gaps = 0/78 (0%)
Query 232 LVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLI 291
+V+ Q + +A G GLF F +LW+W+ ALVL+V+VI G+V VR+T D+ +TL+
Sbjct 351 IVIGQIVAGLAIGIGLFWGFTELWKWSVYFALVLAVVVIFGIVTFAHLVRRTRDLPTTLL 410
Query 292 AVAVGALITLGPLALLQS 309
A+ VG L+T+GPL LL S
Sbjct 411 ALGVGLLVTIGPLVLLAS 428
>gi|169631091|ref|YP_001704740.1| hypothetical protein MAB_4012c [Mycobacterium abscessus ATCC
19977]
gi|169243058|emb|CAM64086.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=418
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/135 (39%), Positives = 73/135 (55%), Gaps = 0/135 (0%)
Query 173 DTEVGEAEAETEVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGAL 232
D + + + E E++E G A+ DVE + +A + + T +G
Sbjct 279 DYDENDYQLEHELQELVNEHGSPVDTEASQLADVETEKKTDAEAKAERKEKIKTYLQGGW 338
Query 233 VVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIA 292
+ Q +LA A GAGLF F +LW WN +ALVL V+ I LV S+ +RKT D+ S LIA
Sbjct 339 IAAQYLLAAAAGAGLFFGFRELWSWNQGIALVLGVLFIAILVASLWVIRKTVDLISILIA 398
Query 293 VAVGALITLGPLALL 307
+ VGALI GPL L+
Sbjct 399 IVVGALIAFGPLVLM 413
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/47 (66%), Positives = 36/47 (77%), Gaps = 1/47 (2%)
Query 14 RQISVAELLARQGVT-GAPARRRRRRRGDSDAITVAELTGEIPIIRD 59
R +SVAELLAR G G + RRR RG++DAI VAELTGEIP+IRD
Sbjct 9 RPVSVAELLARNGAAEGKISGHRRRMRGNADAIPVAELTGEIPVIRD 55
>gi|325002471|ref|ZP_08123583.1| hypothetical protein PseP1_27082 [Pseudonocardia sp. P1]
Length=358
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (43%), Positives = 50/76 (66%), Gaps = 0/76 (0%)
Query 232 LVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLI 291
+V+ Q I GAG+++ F LW IVAL L+V++ +GLV+ VRA+ + +D+ +TL
Sbjct 279 VVIAQWIGGAVAGAGIWVLFRFLWFSFPIVALALAVVLTVGLVLGVRALLRNDDLKTTLF 338
Query 292 AVAVGALITLGPLALL 307
AV VG L+T+ P L+
Sbjct 339 AVLVGLLLTVSPAILV 354
>gi|319949794|ref|ZP_08023818.1| hypothetical protein ES5_09967 [Dietzia cinnamea P4]
gi|319436553|gb|EFV91649.1| hypothetical protein ES5_09967 [Dietzia cinnamea P4]
Length=211
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/76 (47%), Positives = 49/76 (65%), Gaps = 1/76 (1%)
Query 232 LVVLQSILAVAF-GAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
L+++ +LA A GA LFI F LW + VAL L+++VI+GLV VR +R++ D S
Sbjct 132 LILVAQVLASAVAGAALFIGFQLLWNNLTWVALALAIVVIVGLVAMVRVLRRSNDTVSIA 191
Query 291 IAVAVGALITLGPLAL 306
+AV VG +T GPL L
Sbjct 192 LAVIVGLGVTCGPLLL 207
>gi|326383058|ref|ZP_08204747.1| hypothetical protein SCNU_08976 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198194|gb|EGD55379.1| hypothetical protein SCNU_08976 [Gordonia neofelifaecis NRRL
B-59395]
Length=271
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (44%), Positives = 49/72 (69%), Gaps = 1/72 (1%)
Query 236 QSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAV 295
+ ++ +A GAGLF F +LW+ +AL+L+V+VI +V +RK D+ +TL+A+ V
Sbjct 199 EVVIGLAAGAGLFWGFTELWKRYIYLALILAVVVIFAIVTFAHVLRK-RDLPTTLLALGV 257
Query 296 GALITLGPLALL 307
G L+T+GPL LL
Sbjct 258 GMLVTIGPLVLL 269
>gi|227832120|ref|YP_002833827.1| hypothetical protein cauri_0290 [Corynebacterium aurimucosum
ATCC 700975]
gi|262184029|ref|ZP_06043450.1| hypothetical protein CaurA7_08558 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453136|gb|ACP31889.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=279
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/309 (29%), Positives = 133/309 (44%), Gaps = 44/309 (14%)
Query 11 SGNRQISVAELLARQ-----GVTGAPARRRRRRRGDSDAITVAELTGEIPIIRDDHHHAG 65
+ +Q++VAELLAR G +P RRRRR D I+VAELTG + ++
Sbjct 2 ADKKQLTVAELLARNAKDRPGEEKSP--RRRRRSLDEGGISVAELTGNLEKVK------- 52
Query 66 PDAHASQSPAANGRVQVGEAAPQSPAEPVAEQVAEEPTRTVYWSQPEPRWPKSPPQDRRE 125
A+ + A + V + E AP PA P E E P + +P P+ + D+ +
Sbjct 53 ----ATPAEAKHSNVSIDETAPVIPA-PKKESKEETPKKEAPKQEPAPKKAEKNADDKAQ 107
Query 126 SGPELSEYPRPLRHTHSDRAPAGPPSGAEHMSPDPVEHYPDLWVDVLDTEVGEAEAET-- 183
+ PA PS + V+ P+ D + E E + T
Sbjct 108 AA----------------TVPAEKPSDDDTRVIQKVKDKPEQKADAKEAEKPEVKTATKP 151
Query 184 EVREAQPGRGERHAAAAAAGTDVEGDGAAEARVARRALDVVPTLWRGAL----VVLQSIL 239
E + A P + AA T G+ A D G L VVL +++
Sbjct 152 EAKSAAPV--DEKPQDAAVDTFTTGELEAVDHDVEEYDDYDDEEEEGKLNPFAVVLLALV 209
Query 240 AVAFGAGLFIAFDQLW-RWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGAL 298
+ GA +F F+ LW R++ +V LVL V+V +V V A+R + D S +A G +
Sbjct 210 GIVLGAIVFKGFEILWDRFDRLVVLVLGVVVTGVIVGIVHALRTSRDGLSMFLAAVAGLV 269
Query 299 ITLGPLALL 307
+T GPL ++
Sbjct 270 LTFGPLLVV 278
>gi|302523822|ref|ZP_07276164.1| predicted protein [Streptomyces sp. AA4]
gi|302432717|gb|EFL04533.1| predicted protein [Streptomyces sp. AA4]
Length=296
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 48/72 (67%), Gaps = 0/72 (0%)
Query 236 QSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAV 295
Q L V GA +++ F+ LW + ALV +++VI+ LV VR +R+ ED+ +TL+A+ V
Sbjct 221 QLALGVVGGAAVWLGFNWLWVNLAPAALVGALLVIVALVWIVRKIRRAEDLQTTLLAILV 280
Query 296 GALITLGPLALL 307
G ++T+ P ALL
Sbjct 281 GLVVTVSPAALL 292
>gi|259508532|ref|ZP_05751432.1| membrane protein [Corynebacterium efficiens YS-314]
gi|259163882|gb|EEW48436.1| membrane protein [Corynebacterium efficiens YS-314]
Length=344
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (40%), Positives = 50/76 (66%), Gaps = 1/76 (1%)
Query 233 VVLQSILAVAFGAGLFIAFDQLW-RWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLI 291
V+L +I+ V GA +F+AF+ LW R ++ + +L+V V LG+V V A+R + D S ++
Sbjct 268 VLLMAIVGVVLGAAVFLAFEMLWERLSNWLVAILAVAVTLGMVGIVHALRTSRDGFSMVL 327
Query 292 AVAVGALITLGPLALL 307
A VG ++T GPL ++
Sbjct 328 AGIVGLVMTFGPLLVV 343
>gi|296138390|ref|YP_003645633.1| hypothetical protein Tpau_0657 [Tsukamurella paurometabola DSM
20162]
gi|296026524|gb|ADG77294.1| hypothetical protein Tpau_0657 [Tsukamurella paurometabola DSM
20162]
Length=385
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/109 (34%), Positives = 55/109 (51%), Gaps = 13/109 (11%)
Query 204 TDVEGDGAAEARVARRALDVVPTLWRGALVVLQSILA-VAFGAGLFIAFDQLWRWNS--- 259
T+V D AA+A A R R L+++ + V GA LF F QLW W
Sbjct 278 TEVAFDEAADADQAPRGA-------RSWLLLIAEVFGGVVAGAALFYGFYQLWNWGGGTW 330
Query 260 --IVALVLSVMVILGLVVSVRAVRKTEDIASTLIAVAVGALITLGPLAL 306
+ +VL+ +VI+ +V +RKT D + +A+ VG +IT GPL +
Sbjct 331 TIALTVVLAFVVIIAIVTFTHYLRKTTDYLTLGLALFVGLVITFGPLLM 379
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query 11 SGNRQISVAELLARQGVTGAPARRRRRRRGDS-DAITVAELTGEIPIIRD 59
S + ISVAELLAR G PA RRRR ++ITVAELTGEIP++RD
Sbjct 2 SDEQSISVAELLARNGGAQPPAGGRRRRHRGGENSITVAELTGEIPVVRD 51
>gi|260579345|ref|ZP_05847227.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258602474|gb|EEW15769.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=360
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/73 (39%), Positives = 47/73 (65%), Gaps = 1/73 (1%)
Query 232 LVVLQSILAVAFGAGLFIAFDQLW-RWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
++ LQ+ILA+A G G+F F +W + +++ALVL++ V L LV V A+ + D +
Sbjct 282 MMALQAILAIAVGVGVFFGFSLVWAKAPAVLALVLAIAVTLLLVGLVHALLRHRDKLLMI 341
Query 291 IAVAVGALITLGP 303
+A VG ++T+GP
Sbjct 342 LAAVVGLVLTIGP 354
>gi|68537001|ref|YP_251706.1| hypothetical protein jk1907 [Corynebacterium jeikeium K411]
gi|68264600|emb|CAI38088.1| putative membrane protein [Corynebacterium jeikeium K411]
Length=400
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (37%), Positives = 47/73 (65%), Gaps = 1/73 (1%)
Query 232 LVVLQSILAVAFGAGLFIAFDQLW-RWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
+++LQ++LA+A G G+F F +W + +++ALVL++ V L LV V A+ + D +
Sbjct 322 MMLLQAVLAIAVGVGVFFGFSLVWAKAPAVLALVLAIAVTLLLVGLVHALLRHRDKLLMI 381
Query 291 IAVAVGALITLGP 303
+A VG +T+GP
Sbjct 382 LAAVVGLALTIGP 394
>gi|256380730|ref|YP_003104390.1| hypothetical protein Amir_6747 [Actinosynnema mirum DSM 43827]
gi|255925033|gb|ACU40544.1| hypothetical protein Amir_6747 [Actinosynnema mirum DSM 43827]
Length=480
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (39%), Positives = 52/76 (69%), Gaps = 0/76 (0%)
Query 232 LVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTEDIASTLI 291
+++ Q + V GA L++ F LWR + ALV+++ V +GLV+ VR +R+ +D+ +T++
Sbjct 401 VMIGQLAVGVVGGAALWLGFSFLWRTLAPAALVVALAVTVGLVLLVRRIRRADDLGTTVL 460
Query 292 AVAVGALITLGPLALL 307
AV VG ++T+ P A+L
Sbjct 461 AVLVGLIVTVSPAAML 476
>gi|331699378|ref|YP_004335617.1| hypothetical protein Psed_5636 [Pseudonocardia dioxanivorans
CB1190]
gi|326954067|gb|AEA27764.1| hypothetical protein Psed_5636 [Pseudonocardia dioxanivorans
CB1190]
Length=487
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/87 (40%), Positives = 54/87 (63%), Gaps = 2/87 (2%)
Query 221 LDVVPTLWRGALVVLQSILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAV 280
++ P W A V+ Q I GAGL++ F LW +VAL +V+V +GLV++VRA+
Sbjct 397 VEAAPQTW--AAVIAQWIGGAVVGAGLWVGFAFLWMHLPVVALAAAVLVTVGLVLAVRAM 454
Query 281 RKTEDIASTLIAVAVGALITLGPLALL 307
+ +D+ +T+ AV VG L+T+ P L+
Sbjct 455 LRDDDLKTTIFAVLVGLLLTVSPAILV 481
>gi|334564440|ref|ZP_08517431.1| hypothetical protein CbovD2_07680 [Corynebacterium bovis DSM
20582]
Length=152
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/78 (39%), Positives = 49/78 (63%), Gaps = 1/78 (1%)
Query 232 LVVLQSILAVAFGAGLFIAFDQLWR-WNSIVALVLSVMVILGLVVSVRAVRKTEDIASTL 290
+++LQ+I+A+A G G+F F LW +S++ LVL++ V L LV V A+ + D +
Sbjct 74 MMILQAIIAIAVGVGVFFGFTLLWNSLSSVIVLVLALAVTLVLVGLVHALLRHRDTLLMI 133
Query 291 IAVAVGALITLGPLALLQ 308
+A VG ++T+GP LL
Sbjct 134 LAFIVGLVLTVGPRLLLS 151
>gi|284992959|ref|YP_003411513.1| hypothetical protein Gobs_4594 [Geodermatophilus obscurus DSM
43160]
gi|284066204|gb|ADB77142.1| hypothetical protein Gobs_4594 [Geodermatophilus obscurus DSM
43160]
Length=270
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/77 (37%), Positives = 46/77 (60%), Gaps = 5/77 (6%)
Query 238 ILAVAFGAGLFIAFDQLWRWNSIVALVLSVMVILGLVVSVRAVRKTED---IASTLIAVA 294
+LA+A G G++ F LW+ +A++L+ + + GLV V A R+ +D + + L+AV
Sbjct 192 VLALAAGVGIYFLFTVLWQQLPYLAVLLAPVAVAGLVGGVGAWRQRQDREPVGARLVAVL 251
Query 295 V--GALITLGPLALLQS 309
V G L+T+ P A L S
Sbjct 252 VFAGTLLTIAPAAGLLS 268
>gi|296394044|ref|YP_003658928.1| hypothetical protein Srot_1636 [Segniliparus rotundus DSM 44985]
gi|296181191|gb|ADG98097.1| hypothetical protein Srot_1636 [Segniliparus rotundus DSM 44985]
Length=367
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (59%), Gaps = 1/75 (1%)
Query 233 VVLQSILAVAFGAGLFIAFDQLWRWNS-IVALVLSVMVILGLVVSVRAVRKTEDIASTLI 291
+ LQ ++ GA LF F QLWR +S I VL+V+VI LV+ R VR+ D S +
Sbjct 288 IALQFVVGFLLGAVLFWGFRQLWRSDSTIFTAVLAVVVIAVLVLGARWVRRKNDWVSMGL 347
Query 292 AVAVGALITLGPLAL 306
A VGA + GPLA+
Sbjct 348 AGLVGAWVCFGPLAI 362
>gi|337289926|ref|YP_004628947.1| hypothetical protein CULC22_00310 [Corynebacterium ulcerans BR-AD22]
gi|334698232|gb|AEG83028.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=360
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/46 (53%), Positives = 31/46 (68%), Gaps = 2/46 (4%)
Query 14 RQISVAELLARQGVTGAPAR--RRRRRRGDSDAITVAELTGEIPII 57
+Q++VAELLAR G G + RRRRR + I+VAELTG IP +
Sbjct 4 KQLTVAELLARSGKNGGSSETPRRRRRNLEDGGISVAELTGSIPKV 49
Lambda K H
0.314 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 530605165806
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40