BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0500A
Length=78
Score E
Sequences producing significant alignments: (Bits) Value
gi|15839893|ref|NP_334930.1| hypothetical protein MT0521 [Mycoba... 161 3e-38
gi|41410090|ref|NP_962926.1| hypothetical protein MAP3992 [Mycob... 141 3e-32
gi|15828311|ref|NP_302574.1| DNA-binding protein [Mycobacterium ... 140 5e-32
gi|296168156|ref|ZP_06850177.1| excisionase/Xis [Mycobacterium p... 136 8e-31
gi|108797649|ref|YP_637846.1| excisionase/Xis, DNA-binding prote... 133 7e-30
gi|118619663|ref|YP_907995.1| hypothetical protein MUL_4571 [Myc... 133 1e-29
gi|120401853|ref|YP_951682.1| DNA binding domain-containing prot... 126 9e-28
gi|118469304|ref|YP_885347.1| DNA binding domain-containing prot... 125 2e-27
gi|145220680|ref|YP_001131358.1| DNA binding domain-containing p... 125 3e-27
gi|240171905|ref|ZP_04750564.1| hypothetical protein MkanA1_2150... 122 2e-26
gi|169631083|ref|YP_001704732.1| hypothetical protein MAB_4004c ... 121 4e-26
gi|226305123|ref|YP_002765081.1| hypothetical protein RER_16340 ... 114 5e-24
gi|226361145|ref|YP_002778923.1| hypothetical protein ROP_17310 ... 114 5e-24
gi|312141100|ref|YP_004008436.1| hypothetical protein REQ_37700 ... 114 7e-24
gi|111019053|ref|YP_702025.1| excisionase [Rhodococcus jostii RH... 113 8e-24
gi|343925954|ref|ZP_08765469.1| hypothetical protein GOALK_050_0... 112 1e-23
gi|262201000|ref|YP_003272208.1| DNA-binding domain-containing p... 112 1e-23
gi|326383054|ref|ZP_08204743.1| DNA-binding domain-containing pr... 112 2e-23
gi|54027150|ref|YP_121392.1| hypothetical protein nfa51760 [Noca... 111 3e-23
gi|296138394|ref|YP_003645637.1| excisionase family DNA binding ... 105 3e-21
gi|319949791|ref|ZP_08023815.1| hypothetical protein ES5_09952 [... 104 4e-21
gi|333989136|ref|YP_004521750.1| hypothetical protein JDM601_049... 103 8e-21
gi|296394047|ref|YP_003658931.1| excisionase family DNA binding ... 102 2e-20
gi|317507251|ref|ZP_07964997.1| excisionase family DNA binding d... 102 2e-20
gi|254777088|ref|ZP_05218604.1| hypothetical protein MaviaA2_208... 101 4e-20
gi|118462235|ref|YP_883780.1| hypothetical protein MAV_4651 [Myc... 96.3 2e-18
gi|333918307|ref|YP_004491888.1| hypothetical protein AS9A_0634 ... 95.1 3e-18
gi|325002475|ref|ZP_08123587.1| DNA binding domain protein, exci... 93.6 9e-18
gi|302523826|ref|ZP_07276168.1| excisionase [Streptomyces sp. AA... 93.2 1e-17
gi|331699373|ref|YP_004335612.1| excisionase family DNA binding ... 92.8 1e-17
gi|340523766|gb|AEK38971.1| excisionase [Amycolatopsis mediterra... 92.0 2e-17
gi|300782399|ref|YP_003762690.1| excisionase [Amycolatopsis medi... 92.0 2e-17
gi|259508530|ref|ZP_05751430.1| excisionase/Xis, DNA-binding pro... 92.0 3e-17
gi|257054353|ref|YP_003132185.1| DNA-binding protein, excisionas... 92.0 3e-17
gi|300857681|ref|YP_003782664.1| hypothetical protein cpfrc_0026... 92.0 3e-17
gi|25026987|ref|NP_737041.1| hypothetical protein CE0431 [Coryne... 91.7 3e-17
gi|119714748|ref|YP_921713.1| DNA binding domain-containing prot... 91.7 4e-17
gi|317123808|ref|YP_004097920.1| DNA binding domain protein, exc... 91.3 4e-17
gi|38233009|ref|NP_938776.1| putative DNA-binding (excisionase) ... 90.9 5e-17
gi|19551657|ref|NP_599659.1| hypothetical protein NCgl0399 [Cory... 90.9 5e-17
gi|21323176|dbj|BAB97804.1| Hypothetical protein [Corynebacteriu... 90.9 6e-17
gi|258651155|ref|YP_003200311.1| excisionase family DNA binding ... 90.9 6e-17
gi|284034258|ref|YP_003384189.1| excisionase family DNA binding ... 89.4 2e-16
gi|227487196|ref|ZP_03917512.1| excisionase/Xis, DNA-binding pro... 89.0 2e-16
gi|296268244|ref|YP_003650876.1| excisionase family DNA binding ... 88.2 4e-16
gi|117927453|ref|YP_872004.1| DNA binding domain-containing prot... 88.2 4e-16
gi|271962108|ref|YP_003336304.1| hypothetical protein Sros_0537 ... 87.8 4e-16
gi|269128645|ref|YP_003302015.1| excisionase family DNA binding ... 87.8 5e-16
gi|213964779|ref|ZP_03392978.1| conserved domain protein [Coryne... 87.8 5e-16
gi|296118435|ref|ZP_06837014.1| excisionase/Xis, DNA-binding pro... 86.7 1e-15
>gi|15839893|ref|NP_334930.1| hypothetical protein MT0521 [Mycobacterium tuberculosis CDC1551]
gi|31791682|ref|NP_854175.1| hypothetical protein Mb0512 [Mycobacterium bovis AF2122/97]
gi|57116743|ref|YP_177624.1| hypothetical protein Rv0500A [Mycobacterium tuberculosis H37Rv]
77 more sequence titles
Length=78
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%), Gaps = 0/78 (0%)
Query 1 MTSTNGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFR 60
MTSTNGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFR
Sbjct 1 MTSTNGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFR 60
Query 61 VHAKAVHDMLETSYFDAG 78
VHAKAVHDMLETSYFDAG
Sbjct 61 VHAKAVHDMLETSYFDAG 78
>gi|41410090|ref|NP_962926.1| hypothetical protein MAP3992 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398923|gb|AAS06542.1| hypothetical protein MAP_3992 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=85
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/85 (84%), Positives = 74/85 (88%), Gaps = 7/85 (8%)
Query 1 MTSTNGPSARDT-------GFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAV 53
MTSTNGPSARD+ G +GQQ +TQ LTVAEVAALMRVSKMTVYRLVHNGELPAV
Sbjct 1 MTSTNGPSARDSAGKARDAGSGDGQQGRTQFLTVAEVAALMRVSKMTVYRLVHNGELPAV 60
Query 54 RVGRSFRVHAKAVHDMLETSYFDAG 78
RVGRSFRVHAKAVHDMLETSYFDAG
Sbjct 61 RVGRSFRVHAKAVHDMLETSYFDAG 85
>gi|15828311|ref|NP_302574.1| DNA-binding protein [Mycobacterium leprae TN]
gi|221230788|ref|YP_002504204.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
gi|467073|gb|AAA17257.1| B2168_C1_172 [Mycobacterium leprae]
gi|13094004|emb|CAC31946.1| possible DNA-binding protein [Mycobacterium leprae]
gi|219933895|emb|CAR72528.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length=86
Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/86 (83%), Positives = 72/86 (84%), Gaps = 8/86 (9%)
Query 1 MTSTNGPSARD--------TGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPA 52
MTSTNGPSARD TG EGQQ +TQ LTVAEVA LMRVSKMTVYRLVHNGELPA
Sbjct 1 MTSTNGPSARDSAGKSVRDTGSFEGQQPRTQFLTVAEVATLMRVSKMTVYRLVHNGELPA 60
Query 53 VRVGRSFRVHAKAVHDMLETSYFDAG 78
VRVGRSFRVHAKAVHDMLETSYFD G
Sbjct 61 VRVGRSFRVHAKAVHDMLETSYFDVG 86
>gi|296168156|ref|ZP_06850177.1| excisionase/Xis [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896834|gb|EFG76463.1| excisionase/Xis [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=83
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/84 (86%), Positives = 73/84 (87%), Gaps = 7/84 (8%)
Query 1 MTSTNGPSARD------TGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVR 54
MTSTNGPSARD TG EGQ +TQ LTVAEVAALMRVSKMTVYRLVHNGELPAVR
Sbjct 1 MTSTNGPSARDSAGKRDTGPGEGQ-GRTQFLTVAEVAALMRVSKMTVYRLVHNGELPAVR 59
Query 55 VGRSFRVHAKAVHDMLETSYFDAG 78
VGRSFRVHAKAVHDMLETSYFDAG
Sbjct 60 VGRSFRVHAKAVHDMLETSYFDAG 83
>gi|108797649|ref|YP_637846.1| excisionase/Xis, DNA-binding protein [Mycobacterium sp. MCS]
gi|119866736|ref|YP_936688.1| DNA binding domain-containing protein [Mycobacterium sp. KMS]
gi|126433273|ref|YP_001068964.1| DNA binding domain-containing protein [Mycobacterium sp. JLS]
gi|108768068|gb|ABG06790.1| Excisionase/Xis, DNA-binding protein [Mycobacterium sp. MCS]
gi|119692825|gb|ABL89898.1| DNA binding domain, excisionase family [Mycobacterium sp. KMS]
gi|126233073|gb|ABN96473.1| DNA binding domain, excisionase family [Mycobacterium sp. JLS]
Length=84
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/84 (79%), Positives = 71/84 (85%), Gaps = 6/84 (7%)
Query 1 MTSTNGPSARDTGF------VEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVR 54
MTS NGPSARD+ +GQQ + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVR
Sbjct 1 MTSMNGPSARDSAGGKRESGADGQQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVR 60
Query 55 VGRSFRVHAKAVHDMLETSYFDAG 78
VGRSFRVHAKAVHDMLE+SYFDAG
Sbjct 61 VGRSFRVHAKAVHDMLESSYFDAG 84
>gi|118619663|ref|YP_907995.1| hypothetical protein MUL_4571 [Mycobacterium ulcerans Agy99]
gi|183980851|ref|YP_001849142.1| hypothetical protein MMAR_0827 [Mycobacterium marinum M]
gi|118571773|gb|ABL06524.1| conserved protein [Mycobacterium ulcerans Agy99]
gi|183174177|gb|ACC39287.1| conserved protein [Mycobacterium marinum M]
Length=85
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/83 (81%), Positives = 71/83 (86%), Gaps = 8/83 (9%)
Query 1 MTSTNGPSARDT--------GFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPA 52
MTSTNGPSARD+ G EGQQA +Q LTVAEVA+LMRVSKMTVYRLVHNGELPA
Sbjct 1 MTSTNGPSARDSAGKSVRDSGSGEGQQAGSQFLTVAEVASLMRVSKMTVYRLVHNGELPA 60
Query 53 VRVGRSFRVHAKAVHDMLETSYF 75
VRVGRSFRVHAKAVHDML+TSYF
Sbjct 61 VRVGRSFRVHAKAVHDMLQTSYF 83
>gi|120401853|ref|YP_951682.1| DNA binding domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119954671|gb|ABM11676.1| DNA binding domain, excisionase family [Mycobacterium vanbaalenii
PYR-1]
Length=90
Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/90 (72%), Positives = 70/90 (78%), Gaps = 12/90 (13%)
Query 1 MTSTNGPSARDTG------------FVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNG 48
MTS NGPS+RD+ +GQ + Q LTVAEVA+LMRVSKMTVYRLVHNG
Sbjct 1 MTSMNGPSSRDSAGGKAARDAGQSTAGDGQPQRAQFLTVAEVASLMRVSKMTVYRLVHNG 60
Query 49 ELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
ELPAVRVGRSFRVHAKAVHDMLE+SYFDAG
Sbjct 61 ELPAVRVGRSFRVHAKAVHDMLESSYFDAG 90
>gi|118469304|ref|YP_885347.1| DNA binding domain-containing protein [Mycobacterium smegmatis
str. MC2 155]
gi|118170591|gb|ABK71487.1| DNA binding domain, excisionase family protein [Mycobacterium
smegmatis str. MC2 155]
Length=72
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/74 (86%), Positives = 67/74 (91%), Gaps = 3/74 (4%)
Query 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64
NGPSARD G +GQ + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK
Sbjct 2 NGPSARDAG--DGQ-PRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58
Query 65 AVHDMLETSYFDAG 78
AVHD+LETSYFDAG
Sbjct 59 AVHDLLETSYFDAG 72
>gi|145220680|ref|YP_001131358.1| DNA binding domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315442368|ref|YP_004075247.1| DNA-binding protein, excisionase family [Mycobacterium sp. Spyr1]
gi|145213166|gb|ABP42570.1| DNA binding domain, excisionase family [Mycobacterium gilvum
PYR-GCK]
gi|315260671|gb|ADT97412.1| DNA-binding protein, excisionase family [Mycobacterium sp. Spyr1]
Length=90
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 69/90 (77%), Gaps = 12/90 (13%)
Query 1 MTSTNGPSARDTG------------FVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNG 48
MTS NGPS+RD+ + Q + Q LTVAEVA+LMRVSKMTVYRLVHNG
Sbjct 1 MTSMNGPSSRDSAGGKAARDAGQGSAGDAQSPRAQFLTVAEVASLMRVSKMTVYRLVHNG 60
Query 49 ELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
ELPAVRVGRSFRVHAKAVHDMLE+SYFDAG
Sbjct 61 ELPAVRVGRSFRVHAKAVHDMLESSYFDAG 90
>gi|240171905|ref|ZP_04750564.1| hypothetical protein MkanA1_21503 [Mycobacterium kansasii ATCC
12478]
Length=69
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/66 (90%), Positives = 62/66 (94%), Gaps = 0/66 (0%)
Query 10 RDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDM 69
RD+G EGQQA TQ LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDM
Sbjct 2 RDSGTGEGQQAGTQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDM 61
Query 70 LETSYF 75
L+TSYF
Sbjct 62 LQTSYF 67
>gi|169631083|ref|YP_001704732.1| hypothetical protein MAB_4004c [Mycobacterium abscessus ATCC
19977]
gi|169243050|emb|CAM64078.1| Conserved hypothetical protein (excisionase?) [Mycobacterium
abscessus]
Length=83
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/82 (75%), Positives = 65/82 (80%), Gaps = 8/82 (9%)
Query 5 NGPSARDTGFVE--------GQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVG 56
NGPSARD + GQ K Q LTVAEVAALMRVSKMTVYRLVHNGELPAVRVG
Sbjct 2 NGPSARDGAGAKPGRDASAAGQSGKAQFLTVAEVAALMRVSKMTVYRLVHNGELPAVRVG 61
Query 57 RSFRVHAKAVHDMLETSYFDAG 78
RSFRVHAKAV+D+L+ SYFDAG
Sbjct 62 RSFRVHAKAVNDLLQASYFDAG 83
>gi|226305123|ref|YP_002765081.1| hypothetical protein RER_16340 [Rhodococcus erythropolis PR4]
gi|229490516|ref|ZP_04384354.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226184238|dbj|BAH32342.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229322336|gb|EEN88119.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=78
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/78 (76%), Positives = 62/78 (80%), Gaps = 0/78 (0%)
Query 1 MTSTNGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFR 60
M S N PS + + A TQ LTVAEVA LMRVSKMTVYRLVH+GELPAVRVGRSFR
Sbjct 1 MVSANKPSMGSSHDGKPAVAGTQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGRSFR 60
Query 61 VHAKAVHDMLETSYFDAG 78
VHAKAVHD LETSYFDAG
Sbjct 61 VHAKAVHDYLETSYFDAG 78
>gi|226361145|ref|YP_002778923.1| hypothetical protein ROP_17310 [Rhodococcus opacus B4]
gi|226239630|dbj|BAH49978.1| hypothetical protein [Rhodococcus opacus B4]
Length=78
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/78 (76%), Positives = 61/78 (79%), Gaps = 0/78 (0%)
Query 1 MTSTNGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFR 60
MTS PS + A TQ LTVAEVA LMRVSKMTVYRLVH+GELPAVRVGRSFR
Sbjct 1 MTSAKKPSKGSAPDGQPALAGTQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGRSFR 60
Query 61 VHAKAVHDMLETSYFDAG 78
VHAKAVHD LETSYFDAG
Sbjct 61 VHAKAVHDYLETSYFDAG 78
>gi|312141100|ref|YP_004008436.1| hypothetical protein REQ_37700 [Rhodococcus equi 103S]
gi|325674090|ref|ZP_08153780.1| excisionase/Xis [Rhodococcus equi ATCC 33707]
gi|311890439|emb|CBH49757.1| conserved hypothetical protein [Rhodococcus equi 103S]
gi|325555355|gb|EGD25027.1| excisionase/Xis [Rhodococcus equi ATCC 33707]
Length=80
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 63/80 (79%), Gaps = 2/80 (2%)
Query 1 MTSTNGPSARDTGFVEGQQA--KTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRS 58
M S + P G EGQ TQ LTVAEVAALMRVSKMTVYRLVH+GELPAVRVGRS
Sbjct 1 MGSIDKPDRSLRGQQEGQSGLGGTQFLTVAEVAALMRVSKMTVYRLVHSGELPAVRVGRS 60
Query 59 FRVHAKAVHDMLETSYFDAG 78
FRVHAKAVHD L+TSYFDAG
Sbjct 61 FRVHAKAVHDYLQTSYFDAG 80
>gi|111019053|ref|YP_702025.1| excisionase [Rhodococcus jostii RHA1]
gi|110818583|gb|ABG93867.1| possible excisionase [Rhodococcus jostii RHA1]
Length=78
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/78 (76%), Positives = 61/78 (79%), Gaps = 0/78 (0%)
Query 1 MTSTNGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFR 60
MTS PS + A TQ LTVAEVA LMRVSKMTVYRLVH+GELPAVRVGRSFR
Sbjct 1 MTSAKKPSRGSAPDGQPALAGTQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGRSFR 60
Query 61 VHAKAVHDMLETSYFDAG 78
VHAKAVHD LETSYFDAG
Sbjct 61 VHAKAVHDYLETSYFDAG 78
>gi|343925954|ref|ZP_08765469.1| hypothetical protein GOALK_050_02500 [Gordonia alkanivorans NBRC
16433]
gi|343764305|dbj|GAA12395.1| hypothetical protein GOALK_050_02500 [Gordonia alkanivorans NBRC
16433]
Length=77
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/64 (85%), Positives = 57/64 (90%), Gaps = 0/64 (0%)
Query 15 VEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSY 74
V + +Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHD LETSY
Sbjct 14 VSNATSASQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDYLETSY 73
Query 75 FDAG 78
FDAG
Sbjct 74 FDAG 77
>gi|262201000|ref|YP_003272208.1| DNA-binding domain-containing protein [Gordonia bronchialis DSM
43247]
gi|262084347|gb|ACY20315.1| DNA binding domain protein, excisionase family [Gordonia bronchialis
DSM 43247]
Length=82
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/82 (71%), Positives = 63/82 (77%), Gaps = 4/82 (4%)
Query 1 MTSTNGPSARDT----GFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVG 56
M + P R+ G V + +Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVG
Sbjct 1 MAPADTPGDRNNAVGNGPVGNAASGSQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG 60
Query 57 RSFRVHAKAVHDMLETSYFDAG 78
RSFRVHAKAVHD LETSYFDAG
Sbjct 61 RSFRVHAKAVHDYLETSYFDAG 82
>gi|326383054|ref|ZP_08204743.1| DNA-binding domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198190|gb|EGD55375.1| DNA-binding domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=80
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/62 (88%), Positives = 56/62 (91%), Gaps = 0/62 (0%)
Query 17 GQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFD 76
G + TQ LTVAEVA LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVH+ LETSYFD
Sbjct 19 GNSSATQFLTVAEVATLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHEYLETSYFD 78
Query 77 AG 78
AG
Sbjct 79 AG 80
>gi|54027150|ref|YP_121392.1| hypothetical protein nfa51760 [Nocardia farcinica IFM 10152]
gi|54018658|dbj|BAD60028.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=102
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/74 (78%), Positives = 60/74 (82%), Gaps = 3/74 (4%)
Query 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64
NGP + + G TQ LTVAEVA LMRVSKMTVYRLVH+GELPAVRVGRSFRVHAK
Sbjct 32 NGPGSPGQSVLGG---GTQFLTVAEVANLMRVSKMTVYRLVHSGELPAVRVGRSFRVHAK 88
Query 65 AVHDMLETSYFDAG 78
AVHD LETSYFDAG
Sbjct 89 AVHDYLETSYFDAG 102
>gi|296138394|ref|YP_003645637.1| excisionase family DNA binding domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296026528|gb|ADG77298.1| DNA binding domain protein, excisionase family [Tsukamurella
paurometabola DSM 20162]
Length=80
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/59 (85%), Positives = 53/59 (90%), Gaps = 0/59 (0%)
Query 20 AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
A + LTVAEVA LMRVSKMTVYRLVHNGELPAVRVGRSFRVH KAVHD L+TS+FDAG
Sbjct 22 AGSSFLTVAEVATLMRVSKMTVYRLVHNGELPAVRVGRSFRVHEKAVHDYLQTSFFDAG 80
>gi|319949791|ref|ZP_08023815.1| hypothetical protein ES5_09952 [Dietzia cinnamea P4]
gi|319436550|gb|EFV91646.1| hypothetical protein ES5_09952 [Dietzia cinnamea P4]
Length=73
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/64 (82%), Positives = 57/64 (90%), Gaps = 2/64 (3%)
Query 17 GQQAK--TQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSY 74
G QA +Q LTVAEVAALMRVSKMTVYRLVH+GELPAVRVGRSFRVH+KAVH+ L+TSY
Sbjct 10 GSQAAGGSQFLTVAEVAALMRVSKMTVYRLVHSGELPAVRVGRSFRVHSKAVHEYLDTSY 69
Query 75 FDAG 78
F AG
Sbjct 70 FSAG 73
>gi|333989136|ref|YP_004521750.1| hypothetical protein JDM601_0496 [Mycobacterium sp. JDM601]
gi|333485104|gb|AEF34496.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=52
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/52 (95%), Positives = 52/52 (100%), Gaps = 0/52 (0%)
Query 27 VAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
+AEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHD+LETS+FDAG
Sbjct 1 MAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDLLETSFFDAG 52
>gi|296394047|ref|YP_003658931.1| excisionase family DNA binding domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296181194|gb|ADG98100.1| DNA binding domain protein, excisionase family [Segniliparus
rotundus DSM 44985]
Length=84
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/59 (82%), Positives = 54/59 (92%), Gaps = 0/59 (0%)
Query 20 AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
+++ LTVAEVA LMRVSKMTVYRLVH+GELPAVRVGRSFRVH+KAVHD LETSY+ AG
Sbjct 26 GESRFLTVAEVAGLMRVSKMTVYRLVHSGELPAVRVGRSFRVHSKAVHDYLETSYYSAG 84
>gi|317507251|ref|ZP_07964997.1| excisionase family DNA binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316254445|gb|EFV13769.1| excisionase family DNA binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length=84
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/66 (76%), Positives = 57/66 (87%), Gaps = 3/66 (4%)
Query 13 GFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLET 72
G + G+ ++ LTVAEVA LMRVSKMTVYRLVH+GELPAVRVGRSFRVH+KAVHD LET
Sbjct 22 GLIGGE---SRFLTVAEVAGLMRVSKMTVYRLVHSGELPAVRVGRSFRVHSKAVHDYLET 78
Query 73 SYFDAG 78
SY+ AG
Sbjct 79 SYYSAG 84
>gi|254777088|ref|ZP_05218604.1| hypothetical protein MaviaA2_20814 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|254821067|ref|ZP_05226068.1| hypothetical protein MintA_14117 [Mycobacterium intracellulare
ATCC 13950]
Length=49
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/49 (98%), Positives = 49/49 (100%), Gaps = 0/49 (0%)
Query 30 VAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
+AALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG
Sbjct 1 MAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 49
>gi|118462235|ref|YP_883780.1| hypothetical protein MAV_4651 [Mycobacterium avium 104]
gi|342858997|ref|ZP_08715651.1| hypothetical protein MCOL_08973 [Mycobacterium colombiense CECT
3035]
gi|118163522|gb|ABK64419.1| conserved domain protein [Mycobacterium avium 104]
gi|336460453|gb|EGO39349.1| DNA-binding protein, excisionase family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|342133238|gb|EGT86441.1| hypothetical protein MCOL_08973 [Mycobacterium colombiense CECT
3035]
Length=45
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/45 (100%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
Query 34 MRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
MRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG
Sbjct 1 MRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 45
>gi|333918307|ref|YP_004491888.1| hypothetical protein AS9A_0634 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480528|gb|AEF39088.1| hypothetical protein AS9A_0634 [Amycolicicoccus subflavus DQS3-9A1]
Length=79
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/57 (79%), Positives = 50/57 (88%), Gaps = 0/57 (0%)
Query 22 TQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
T+ LTVAEVA++MRVSKMTVYRLVH G+LPAVRVGRSFRV A+AV D L SYFDAG
Sbjct 23 TKFLTVAEVASMMRVSKMTVYRLVHGGDLPAVRVGRSFRVQAQAVDDYLRKSYFDAG 79
>gi|325002475|ref|ZP_08123587.1| DNA binding domain protein, excisionase family [Pseudonocardia
sp. P1]
Length=70
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/59 (75%), Positives = 50/59 (85%), Gaps = 0/59 (0%)
Query 20 AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
A+ Q LTVAEVA++MRVSKMTVYRLVH+GELPA RVGRSFRV +AV D L +YFDAG
Sbjct 12 AQVQFLTVAEVASMMRVSKMTVYRLVHSGELPAARVGRSFRVPQRAVEDYLRNAYFDAG 70
>gi|302523826|ref|ZP_07276168.1| excisionase [Streptomyces sp. AA4]
gi|302432721|gb|EFL04537.1| excisionase [Streptomyces sp. AA4]
Length=82
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/72 (67%), Positives = 55/72 (77%), Gaps = 3/72 (4%)
Query 7 PSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAV 66
P+ R+ GQ Q LTVAEVA LMRVSKMTVYRLVH+GELPAVRVG+SFRV KAV
Sbjct 14 PNKREDLPAVGQ---VQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGKSFRVPEKAV 70
Query 67 HDMLETSYFDAG 78
H+ L+ +YFD G
Sbjct 71 HEYLQGAYFDVG 82
>gi|331699373|ref|YP_004335612.1| excisionase family DNA binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326954062|gb|AEA27759.1| DNA binding domain protein, excisionase family [Pseudonocardia
dioxanivorans CB1190]
Length=70
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/59 (75%), Positives = 50/59 (85%), Gaps = 0/59 (0%)
Query 20 AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
A+ Q LTVAEVAA+MRVSKMTVYRLVH GELPA RVGRSFRV +AV + L ++YFDAG
Sbjct 12 AQVQFLTVAEVAAMMRVSKMTVYRLVHGGELPAARVGRSFRVPKRAVEEYLRSAYFDAG 70
>gi|340523766|gb|AEK38971.1| excisionase [Amycolatopsis mediterranei S699]
Length=78
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/58 (75%), Positives = 50/58 (87%), Gaps = 0/58 (0%)
Query 21 KTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
+ Q LTVAEVA LMRVSKMTVYRLVH+GELPAVRVG+SFRV KAVH+ L+ +Y+D G
Sbjct 21 QVQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGKSFRVPEKAVHEYLQGAYYDVG 78
>gi|300782399|ref|YP_003762690.1| excisionase [Amycolatopsis mediterranei U32]
gi|299791913|gb|ADJ42288.1| excisionase [Amycolatopsis mediterranei U32]
Length=71
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/58 (75%), Positives = 50/58 (87%), Gaps = 0/58 (0%)
Query 21 KTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
+ Q LTVAEVA LMRVSKMTVYRLVH+GELPAVRVG+SFRV KAVH+ L+ +Y+D G
Sbjct 14 QVQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGKSFRVPEKAVHEYLQGAYYDVG 71
>gi|259508530|ref|ZP_05751430.1| excisionase/Xis, DNA-binding protein [Corynebacterium efficiens
YS-314]
gi|259163880|gb|EEW48434.1| excisionase/Xis, DNA-binding protein [Corynebacterium efficiens
YS-314]
Length=65
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/62 (70%), Positives = 53/62 (86%), Gaps = 0/62 (0%)
Query 17 GQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFD 76
++ K LTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRV KAV+D L++S+++
Sbjct 4 AREDKGTFLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVQEKAVNDYLDSSFYE 63
Query 77 AG 78
AG
Sbjct 64 AG 65
>gi|257054353|ref|YP_003132185.1| DNA-binding protein, excisionase family [Saccharomonospora viridis
DSM 43017]
gi|256584225|gb|ACU95358.1| DNA-binding protein, excisionase family [Saccharomonospora viridis
DSM 43017]
Length=71
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/56 (77%), Positives = 49/56 (88%), Gaps = 0/56 (0%)
Query 23 QLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
Q LTVAEVA+LMRVSKMTVYRLVH+GELPA RVG+SFRV KAVH+ L+ +YFD G
Sbjct 16 QFLTVAEVASLMRVSKMTVYRLVHSGELPAARVGKSFRVPEKAVHEYLDNAYFDVG 71
>gi|300857681|ref|YP_003782664.1| hypothetical protein cpfrc_00264 [Corynebacterium pseudotuberculosis
FRC41]
gi|337289928|ref|YP_004628949.1| hypothetical protein CULC22_00312 [Corynebacterium ulcerans BR-AD22]
gi|300685135|gb|ADK28057.1| hypothetical protein cpfrc_00264 [Corynebacterium pseudotuberculosis
FRC41]
6 more sequence titles
Length=63
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/55 (79%), Positives = 49/55 (90%), Gaps = 0/55 (0%)
Query 24 LLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
LTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L+ SY+D G
Sbjct 9 FLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDASYYDVG 63
>gi|25026987|ref|NP_737041.1| hypothetical protein CE0431 [Corynebacterium efficiens YS-314]
gi|23492267|dbj|BAC17241.1| hypothetical protein [Corynebacterium efficiens YS-314]
Length=66
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/62 (70%), Positives = 53/62 (86%), Gaps = 0/62 (0%)
Query 17 GQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFD 76
++ K LTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRV KAV+D L++S+++
Sbjct 5 AREDKGTFLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVQEKAVNDYLDSSFYE 64
Query 77 AG 78
AG
Sbjct 65 AG 66
>gi|119714748|ref|YP_921713.1| DNA binding domain-containing protein [Nocardioides sp. JS614]
gi|119535409|gb|ABL80026.1| DNA binding domain, excisionase family [Nocardioides sp. JS614]
Length=67
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/62 (70%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
Query 17 GQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFD 76
G + ++ LTVAEVAA+MRVSKMTVYRLVHNGELPAVRVGRSFRV K V + L S++
Sbjct 6 GDSSSSKFLTVAEVAAMMRVSKMTVYRLVHNGELPAVRVGRSFRVQEKDVDEYLRKSFYS 65
Query 77 AG 78
AG
Sbjct 66 AG 67
>gi|317123808|ref|YP_004097920.1| DNA binding domain protein, excisionase family [Intrasporangium
calvum DSM 43043]
gi|315587896|gb|ADU47193.1| DNA binding domain protein, excisionase family [Intrasporangium
calvum DSM 43043]
Length=66
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/61 (74%), Positives = 50/61 (82%), Gaps = 0/61 (0%)
Query 16 EGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYF 75
E Q A+ + LTVAEVA++MRVSKMTVYRLVH GELPAVRVGRSFRV AVH L+TSY
Sbjct 4 ERQLAEVRFLTVAEVASIMRVSKMTVYRLVHGGELPAVRVGRSFRVPEDAVHKYLQTSYI 63
Query 76 D 76
D
Sbjct 64 D 64
>gi|38233009|ref|NP_938776.1| putative DNA-binding (excisionase) protein [Corynebacterium diphtheriae
NCTC 13129]
gi|38199268|emb|CAE48899.1| Putative DNA-binding (excisionase) protein [Corynebacterium diphtheriae]
Length=63
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/62 (68%), Positives = 52/62 (84%), Gaps = 0/62 (0%)
Query 17 GQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFD 76
++ LTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L++SY++
Sbjct 2 AREDNGSFLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDSSYYN 61
Query 77 AG 78
G
Sbjct 62 VG 63
>gi|19551657|ref|NP_599659.1| hypothetical protein NCgl0399 [Corynebacterium glutamicum ATCC
13032]
gi|62389312|ref|YP_224714.1| hypothetical protein cg0492 [Corynebacterium glutamicum ATCC
13032]
gi|145294529|ref|YP_001137350.1| hypothetical protein cgR_0484 [Corynebacterium glutamicum R]
gi|41324646|emb|CAF19128.1| extremely conserved POSSIBLE DNA-BINDING PROTEIN [Corynebacterium
glutamicum ATCC 13032]
gi|140844449|dbj|BAF53448.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045328|gb|EGV41000.1| hypothetical protein CgS9114_05252 [Corynebacterium glutamicum
S9114]
Length=63
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/55 (77%), Positives = 51/55 (93%), Gaps = 0/55 (0%)
Query 24 LLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
LTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L++S+++AG
Sbjct 9 FLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDSSFYEAG 63
>gi|21323176|dbj|BAB97804.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length=66
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/55 (77%), Positives = 51/55 (93%), Gaps = 0/55 (0%)
Query 24 LLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
LTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L++S+++AG
Sbjct 12 FLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDSSFYEAG 66
>gi|258651155|ref|YP_003200311.1| excisionase family DNA binding domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258554380|gb|ACV77322.1| DNA binding domain protein, excisionase family [Nakamurella multipartita
DSM 44233]
Length=78
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/72 (64%), Positives = 54/72 (75%), Gaps = 5/72 (6%)
Query 7 PSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAV 66
P+ RD+ E + LTVAEVA LMRVS+MTVYRLVH+GELPAVRVGRSFRV +AV
Sbjct 12 PTPRDSTLSE-----MRFLTVAEVATLMRVSRMTVYRLVHSGELPAVRVGRSFRVPERAV 66
Query 67 HDMLETSYFDAG 78
HD L T++ D G
Sbjct 67 HDYLRTAFNDVG 78
>gi|284034258|ref|YP_003384189.1| excisionase family DNA binding domain-containing protein [Kribbella
flavida DSM 17836]
gi|283813551|gb|ADB35390.1| DNA binding domain protein, excisionase family [Kribbella flavida
DSM 17836]
Length=71
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/64 (71%), Positives = 52/64 (82%), Gaps = 2/64 (3%)
Query 17 GQQ--AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSY 74
G+Q A+ + LTVAEVA MRVSKMTVYRLVH+GELPAVRVGRSFRV AVHD L+ ++
Sbjct 8 GEQPLAEVKFLTVAEVATAMRVSKMTVYRLVHSGELPAVRVGRSFRVSEDAVHDYLKGAF 67
Query 75 FDAG 78
F AG
Sbjct 68 FQAG 71
>gi|227487196|ref|ZP_03917512.1| excisionase/Xis, DNA-binding protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541634|ref|ZP_03971683.1| excisionase/Xis, DNA-binding protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092854|gb|EEI28166.1| excisionase/Xis, DNA-binding protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182602|gb|EEI63574.1| excisionase/Xis, DNA-binding protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=63
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/62 (71%), Positives = 49/62 (80%), Gaps = 0/62 (0%)
Query 17 GQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFD 76
Q+ K LTVAEVA +MRVSKMTVYRLVH GELPAVRVGRSFRV+ KAV D LE S ++
Sbjct 2 AQEDKGAFLTVAEVAEIMRVSKMTVYRLVHAGELPAVRVGRSFRVNEKAVSDYLEASTYE 61
Query 77 AG 78
G
Sbjct 62 VG 63
>gi|296268244|ref|YP_003650876.1| excisionase family DNA binding domain-containing protein [Thermobispora
bispora DSM 43833]
gi|296091031|gb|ADG86983.1| DNA binding domain protein, excisionase family [Thermobispora
bispora DSM 43833]
Length=67
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/59 (70%), Positives = 51/59 (87%), Gaps = 0/59 (0%)
Query 20 AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
++ + LTVAEVAA+MRVSKMTVYRLVH+GELPA+RVGRSFRV +AVHD L ++ +AG
Sbjct 9 SEVKFLTVAEVAAVMRVSKMTVYRLVHSGELPAIRVGRSFRVPEQAVHDYLRDAFIEAG 67
>gi|117927453|ref|YP_872004.1| DNA binding domain-containing protein [Acidothermus cellulolyticus
11B]
gi|117647916|gb|ABK52018.1| DNA binding domain, excisionase family [Acidothermus cellulolyticus
11B]
Length=85
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/69 (63%), Positives = 53/69 (77%), Gaps = 0/69 (0%)
Query 10 RDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDM 69
R+ G + A+ + LTVAEVA +MRVS+MTVYRLVH GELPAVRVGRSFRV +AVHD
Sbjct 17 REKGLRDKTLAEVRFLTVAEVADVMRVSRMTVYRLVHAGELPAVRVGRSFRVPEQAVHDY 76
Query 70 LETSYFDAG 78
L ++ +AG
Sbjct 77 LRDAFIEAG 85
>gi|271962108|ref|YP_003336304.1| hypothetical protein Sros_0537 [Streptosporangium roseum DSM
43021]
gi|270505283|gb|ACZ83561.1| hypothetical protein Sros_0537 [Streptosporangium roseum DSM
43021]
Length=67
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/59 (70%), Positives = 50/59 (85%), Gaps = 0/59 (0%)
Query 20 AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
++ + LTVAEVA +MRVSKMTVYRLVH+GELPA+RVGRSFRV +AVHD L +Y +AG
Sbjct 9 SEVKFLTVAEVATVMRVSKMTVYRLVHSGELPAIRVGRSFRVPEQAVHDYLRDAYIEAG 67
>gi|269128645|ref|YP_003302015.1| excisionase family DNA binding domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268313603|gb|ACY99977.1| DNA binding domain protein, excisionase family [Thermomonospora
curvata DSM 43183]
Length=67
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/59 (70%), Positives = 51/59 (87%), Gaps = 0/59 (0%)
Query 20 AKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
++ + LTVAEVAA+MRVSKMTVYRLVH+GELPA+RVGRSFRV +AVHD L ++ +AG
Sbjct 9 SEVRFLTVAEVAAVMRVSKMTVYRLVHSGELPAIRVGRSFRVPEQAVHDYLRDAFIEAG 67
>gi|213964779|ref|ZP_03392978.1| conserved domain protein [Corynebacterium amycolatum SK46]
gi|213952315|gb|EEB63698.1| conserved domain protein [Corynebacterium amycolatum SK46]
Length=63
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/58 (73%), Positives = 49/58 (85%), Gaps = 0/58 (0%)
Query 21 KTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 78
K LTVAEVA +MRVSKMTVYRLVH GELPAVRVGRSFRVH AV + L++S+++AG
Sbjct 6 KGTFLTVAEVADIMRVSKMTVYRLVHAGELPAVRVGRSFRVHESAVKEYLDSSFYNAG 63
>gi|296118435|ref|ZP_06837014.1| excisionase/Xis, DNA-binding protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295968576|gb|EFG81822.1| excisionase/Xis, DNA-binding protein [Corynebacterium ammoniagenes
DSM 20306]
Length=63
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/61 (69%), Positives = 47/61 (78%), Gaps = 0/61 (0%)
Query 18 QQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDA 77
+ K LTVAEVA +MRVSKMTVYRLVH G+LPAVRVGRSFRV+ KAV D L S +D
Sbjct 3 NEDKGTFLTVAEVADIMRVSKMTVYRLVHAGDLPAVRVGRSFRVNDKAVQDYLNNSIYDV 62
Query 78 G 78
G
Sbjct 63 G 63
Lambda K H
0.319 0.129 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129734191374
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40