BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0500B

Length=33
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|38233010|ref|NP_938777.1|  hypothetical protein DIP0396 [Coryn...  60.1    1e-07
gi|237786467|ref|YP_002907172.1|  hypothetical protein ckrop_1916...  58.5    3e-07
gi|302329977|gb|ADL20171.1|  Hypothetical protein Cp1002_0268 [Co...  58.5    3e-07
gi|148821702|ref|YP_001286456.1|  hypothetical protein TBFG_10511...  58.5    3e-07
gi|15828310|ref|NP_302573.1|  hypothetical protein ML2428A [Mycob...  57.8    5e-07
gi|330804191|ref|XP_003290081.1|  hypothetical protein DICPUDRAFT...  38.1    0.45 
gi|213965046|ref|ZP_03393245.1|  conserved hypothetical protein [...  33.5    9.3  


>gi|38233010|ref|NP_938777.1| hypothetical protein DIP0396 [Corynebacterium diphtheriae NCTC 
13129]
 gi|38199269|emb|CAE48900.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=75

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  1   MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33
           MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
Sbjct  43  MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  75


>gi|237786467|ref|YP_002907172.1| hypothetical protein ckrop_1916 [Corynebacterium kroppenstedtii 
DSM 44385]
 gi|237759379|gb|ACR18629.1| hypothetical protein ckrop_1916 [Corynebacterium kroppenstedtii 
DSM 44385]
Length=51

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  1   MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33
           MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
Sbjct  19  MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  51


>gi|302329977|gb|ADL20171.1| Hypothetical protein Cp1002_0268 [Corynebacterium pseudotuberculosis 
1002]
 gi|308275661|gb|ADO25560.1| hypothetical protein CpI19_0270 [Corynebacterium pseudotuberculosis 
I19]
 gi|341824087|gb|AEK91608.1| Hypothetical protein CpPAT10_0273 [Corynebacterium pseudotuberculosis 
PAT10]
Length=58

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  1   MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33
           MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
Sbjct  26  MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  58


>gi|148821702|ref|YP_001286456.1| hypothetical protein TBFG_10511 [Mycobacterium tuberculosis F11]
 gi|253797432|ref|YP_003030433.1| hypothetical protein TBMG_00507 [Mycobacterium tuberculosis KZN 
1435]
 gi|289552754|ref|ZP_06441964.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 10 more sequence titles
 Length=61

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  1   MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33
           MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
Sbjct  29  MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  61


>gi|15828310|ref|NP_302573.1| hypothetical protein ML2428A [Mycobacterium leprae TN]
 gi|57116744|ref|YP_177625.1| hypothetical protein Rv0500B [Mycobacterium tuberculosis H37Rv]
 gi|108797650|ref|YP_637847.1| hypothetical protein Mmcs_0670 [Mycobacterium sp. MCS]
 64 more sequence titles
 Length=33

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  1   MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33
           MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
Sbjct  1   MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33


>gi|330804191|ref|XP_003290081.1| hypothetical protein DICPUDRAFT_154564 [Dictyostelium purpureum]
 gi|325079790|gb|EGC33373.1| hypothetical protein DICPUDRAFT_154564 [Dictyostelium purpureum]
Length=130

 Score = 38.1 bits (87),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 20/33 (61%), Positives = 27/33 (82%), Gaps = 0/33 (0%)

Query  1    MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33
            M S++ KRRK+MSK KHRKL +RTR  +++LGK
Sbjct  97   MSSILIKRRKKMSKHKHRKLRKRTRALKKRLGK  129


>gi|213965046|ref|ZP_03393245.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
 gi|213952582|gb|EEB63965.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=48

 Score = 33.5 bits (75),  Expect = 9.3, Method: Compositional matrix adjust.
 Identities = 32/33 (97%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  1   MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK  33
           MGSVIKKRRKRMSKKKHRK+LRRTRVQRRKLGK
Sbjct  16  MGSVIKKRRKRMSKKKHRKMLRRTRVQRRKLGK  48



Lambda     K      H
   0.327    0.135    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127449871100


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40