BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0506

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607647|ref|NP_215020.1|  membrane protein [Mycobacterium tub...   298    2e-79
gi|15839899|ref|NP_334936.1|  hypothetical protein MT0527 [Mycoba...   295    1e-78
gi|340625534|ref|YP_004743986.1|  hypothetical protein MCAN_05091...   294    3e-78
gi|339293555|gb|AEJ45666.1|  membrane protein [Mycobacterium tube...   281    2e-74
gi|183980864|ref|YP_001849155.1|  MmpS-family membrane protein [M...   209    1e-52
gi|240171914|ref|ZP_04750573.1|  MmpS-family membrane protein [My...   197    3e-49
gi|183980798|ref|YP_001849089.1|  hypothetical protein MMAR_0774 ...   140    5e-32
gi|240169835|ref|ZP_04748494.1|  hypothetical protein MkanA1_1100...   136    1e-30
gi|31792741|ref|NP_855234.1|  membrane protein [Mycobacterium bov...   127    6e-28
gi|339631627|ref|YP_004723269.1|  hypothetical protein MAF_15830 ...   126    1e-27
gi|183983723|ref|YP_001852014.1|  membrane protein MmpS5_1 [Mycob...   121    4e-26
gi|118470714|ref|YP_887799.1|  MmpS5 protein [Mycobacterium smegm...   120    6e-26
gi|118471113|ref|YP_884641.1|  MmpS5 protein [Mycobacterium smegm...   119    1e-25
gi|240170826|ref|ZP_04749485.1|  membrane protein MmpS5_1 [Mycoba...   119    1e-25
gi|41409848|ref|NP_962684.1|  MmpS1 [Mycobacterium avium subsp. p...   119    2e-25
gi|336460143|gb|EGO39048.1|  Mycobacterium membrane protein [Myco...   118    3e-25
gi|118618954|ref|YP_907286.1|  membrane protein MmpS5_1 [Mycobact...   118    3e-25
gi|118616542|ref|YP_904874.1|  transmembrane proteinm, MmpS5 [Myc...   118    3e-25
gi|118472449|ref|YP_884986.1|  MmpS1 protein [Mycobacterium smegm...   117    5e-25
gi|296164372|ref|ZP_06846949.1|  MmpS family membrane protein [My...   115    2e-24
gi|118617881|ref|YP_906213.1|  membrane protein MmpS4 [Mycobacter...   115    2e-24
gi|254820444|ref|ZP_05225445.1|  hypothetical protein MintA_10976...   115    2e-24
gi|15607817|ref|NP_215191.1|  hypothetical protein Rv0677c [Mycob...   115    3e-24
gi|240172456|ref|ZP_04751115.1|  membrane transporter [Mycobacter...   115    3e-24
gi|183981710|ref|YP_001850001.1|  hypothetical protein MMAR_1696 ...   114    3e-24
gi|342858162|ref|ZP_08714817.1|  hypothetical protein MCOL_04791 ...   114    6e-24
gi|333989815|ref|YP_004522429.1|  transmembrane proteinm MmpS5 [M...   114    6e-24
gi|254819607|ref|ZP_05224608.1|  MmpS4 protein [Mycobacterium int...   113    8e-24
gi|333992658|ref|YP_004525272.1|  hypothetical protein JDM601_401...   113    1e-23
gi|118473924|ref|YP_884793.1|  MmpS4 protein [Mycobacterium smegm...   113    1e-23
gi|183981736|ref|YP_001850027.1|  membrane protein MmpS1 [Mycobac...   113    1e-23
gi|5524339|gb|AAD44232.1|AF143772_38  TmtpA [Mycobacterium avium]      112    2e-23
gi|240171020|ref|ZP_04749679.1|  hypothetical protein MkanA1_1704...   112    2e-23
gi|169630231|ref|YP_001703880.1|  MmpS family protein [Mycobacter...   112    3e-23
gi|240172076|ref|ZP_04750735.1|  hypothetical protein MkanA1_2236...   111    3e-23
gi|41407339|ref|NP_960175.1|  MmpS4 [Mycobacterium avium subsp. p...   111    4e-23
gi|296165068|ref|ZP_06847621.1|  MmpS family membrane protein [My...   110    8e-23
gi|118617551|ref|YP_905883.1|  membrane protein MmpS1 [Mycobacter...   110    1e-22
gi|254820611|ref|ZP_05225612.1|  MmpS5 protein [Mycobacterium int...   110    1e-22
gi|118462696|ref|YP_881703.1|  MmpS5 protein [Mycobacterium avium...   109    1e-22
gi|118464951|ref|YP_880981.1|  Mmps1 protein [Mycobacterium avium...   109    1e-22
gi|342858823|ref|ZP_08715478.1|  MmpS4 protein [Mycobacterium col...   109    1e-22
gi|333992781|ref|YP_004525395.1|  transmembrane proteinm MmpS5 [M...   109    1e-22
gi|145223615|ref|YP_001134293.1|  membrane family protein [Mycoba...   109    1e-22
gi|315442510|ref|YP_004075389.1|  mycobacterium membrane protein ...   108    2e-22
gi|118617529|ref|YP_905861.1|  hypothetical protein MUL_1935 [Myc...   108    2e-22
gi|120404167|ref|YP_953996.1|  hypothetical protein Mvan_3188 [My...   108    3e-22
gi|296167298|ref|ZP_06849700.1|  MmpS family membrane protein [My...   108    4e-22
gi|41407835|ref|NP_960671.1|  MmpS5 [Mycobacterium avium subsp. p...   107    5e-22
gi|118468420|ref|YP_885767.1|  MmpS5 protein [Mycobacterium smegm...   107    5e-22


>gi|15607647|ref|NP_215020.1| membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|31791688|ref|NP_854181.1| membrane protein [Mycobacterium bovis AF2122/97]
 gi|121636424|ref|YP_976647.1| putative membrane protein mmpS2 [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 47 more sequence titles
 Length=147

 Score =  298 bits (762),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 146/147 (99%), Positives = 147/147 (100%), Gaps = 0/147 (0%)

Query  1    VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR  60
            +RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR
Sbjct  1    MRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR  60

Query  61   VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR  120
            VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR
Sbjct  61   VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR  120

Query  121  IIVNGAVKDERSETSPRALTSCQVSSG  147
            IIVNGAVKDERSETSPRALTSCQVSSG
Sbjct  121  IIVNGAVKDERSETSPRALTSCQVSSG  147


>gi|15839899|ref|NP_334936.1| hypothetical protein MT0527 [Mycobacterium tuberculosis CDC1551]
 gi|254363468|ref|ZP_04979514.1| membrane protein mmpS2 [Mycobacterium tuberculosis str. Haarlem]
 gi|308231568|ref|ZP_07412944.2| membrane protein mmpS2 [Mycobacterium tuberculosis SUMu001]
 28 more sequence titles
 Length=145

 Score =  295 bits (756),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)

Query  3    MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT  62
            MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT
Sbjct  1    MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT  60

Query  63   YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII
Sbjct  61   YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  120

Query  123  VNGAVKDERSETSPRALTSCQVSSG  147
            VNGAVKDERSETSPRALTSCQVSSG
Sbjct  121  VNGAVKDERSETSPRALTSCQVSSG  145


>gi|340625534|ref|YP_004743986.1| hypothetical protein MCAN_05091 [Mycobacterium canettii CIPT 
140010059]
 gi|340003724|emb|CCC42849.1| putative conserved membrane protein MMPS2 [Mycobacterium canettii 
CIPT 140010059]
Length=147

 Score =  294 bits (753),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 145/147 (99%), Positives = 146/147 (99%), Gaps = 0/147 (0%)

Query  1    VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR  60
            +RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVP FNPKR
Sbjct  1    MRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPPFNPKR  60

Query  61   VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR  120
            VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR
Sbjct  61   VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR  120

Query  121  IIVNGAVKDERSETSPRALTSCQVSSG  147
            IIVNGAVKDERSETSPRALTSCQVSSG
Sbjct  121  IIVNGAVKDERSETSPRALTSCQVSSG  147


>gi|339293555|gb|AEJ45666.1| membrane protein [Mycobacterium tuberculosis CCDC5079]
 gi|339297196|gb|AEJ49306.1| membrane protein [Mycobacterium tuberculosis CCDC5180]
Length=138

 Score =  281 bits (720),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 137/138 (99%), Positives = 138/138 (100%), Gaps = 0/138 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            +KRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA
Sbjct  1    MKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  60

Query  70   KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD  129
            KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD
Sbjct  61   KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD  120

Query  130  ERSETSPRALTSCQVSSG  147
            ERSETSPRALTSCQVSSG
Sbjct  121  ERSETSPRALTSCQVSSG  138


>gi|183980864|ref|YP_001849155.1| MmpS-family membrane protein [Mycobacterium marinum M]
 gi|183174190|gb|ACC39300.1| conserved membrane protein MmpS-family [Mycobacterium marinum 
M]
Length=145

 Score =  209 bits (532),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 99/145 (69%), Positives = 118/145 (82%), Gaps = 0/145 (0%)

Query  3    MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT  62
            MI V+  V+RMWLLLA++ VA+V GLGIYRLH +FGVHEQP V    D DVP FNPK VT
Sbjct  1    MIPVTSVVRRMWLLLAVMGVALVAGLGIYRLHRVFGVHEQPVVQAAADTDVPQFNPKYVT  60

Query  63   YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            YEV+GPA +A+IAYLDPDA V +L  V LPWS TV T+LPAVSVNL+AQSNA+ +SCRI+
Sbjct  61   YEVYGPAPSARIAYLDPDAHVRQLSDVPLPWSQTVSTSLPAVSVNLLAQSNAEELSCRIL  120

Query  123  VNGAVKDERSETSPRALTSCQVSSG  147
            VNGAVKD+RS + P+ALT CQV+S 
Sbjct  121  VNGAVKDQRSVSRPKALTFCQVTSA  145


>gi|240171914|ref|ZP_04750573.1| MmpS-family membrane protein [Mycobacterium kansasii ATCC 12478]
Length=138

 Score =  197 bits (502),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 100/138 (73%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            +KRMWLLLA+  VA+V  LGIYRLH +FG HE P V  K D DVPLFNPK+V YEVFGPA
Sbjct  1    MKRMWLLLAVSAVAIVAALGIYRLHRVFGAHEHPAVTAKADIDVPLFNPKQVIYEVFGPA  60

Query  70   KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD  129
             TA+IAYLDPDARV +L  V LPWS TV TTLPAVSVNLMAQS A+ I CRIIVNG VKD
Sbjct  61   STARIAYLDPDARVVQLPDVPLPWSQTVNTTLPAVSVNLMAQSAAETIGCRIIVNGTVKD  120

Query  130  ERSETSPRALTSCQVSSG  147
            ERS T P+ALT CQV+S 
Sbjct  121  ERSVTRPKALTFCQVTSA  138


>gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 [Mycobacterium marinum M]
 gi|183174124|gb|ACC39234.1| conserved membrane protein [Mycobacterium marinum M]
Length=148

 Score =  140 bits (354),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 74/145 (52%), Positives = 92/145 (64%), Gaps = 1/145 (0%)

Query  4    ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTY  63
            ISV  A+KR W+ L I+ V V+    + RL S FGVH+   +      D+  FNPK V Y
Sbjct  4    ISVLNALKRTWIALVILAVVVIAAFSVNRLRSYFGVHDDRPLTSGVSDDIKPFNPKHVVY  63

Query  64   EVFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            EVFGP  T A I YLD +A+  R+  V+LPW++ V TTLP+VSVN++AQ + D I CRII
Sbjct  64   EVFGPPGTVANINYLDIEAQPQRVSGVTLPWTLAVTTTLPSVSVNVVAQGDTDQIGCRII  123

Query  123  VNGAVKDERSETSPRALTSCQVSSG  147
            VNG VKDERSE    A T C V S 
Sbjct  124  VNGEVKDERSENEVNAQTFCLVKSA  148


>gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_11007 [Mycobacterium kansasii ATCC 
12478]
Length=148

 Score =  136 bits (343),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 75/144 (53%), Positives = 95/144 (66%), Gaps = 1/144 (0%)

Query  4    ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTY  63
            ISV+ A+KR+W+ L IV V  V G  +YRL   FG  ++  +      D+  FNPK V Y
Sbjct  4    ISVASALKRVWIPLVIVAVVAVAGFSVYRLRGFFGYTDKGPITSGIADDIKPFNPKHVVY  63

Query  64   EVFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            EVFGP  T A I YLD +A+  R+ +V LPW+++V TTLP+VSVN++AQ N+D I CRII
Sbjct  64   EVFGPPGTIANINYLDINAQPQRVSNVPLPWTLSVTTTLPSVSVNVVAQGNSDQIGCRII  123

Query  123  VNGAVKDERSETSPRALTSCQVSS  146
            VNG VKDERSE    A T C V S
Sbjct  124  VNGEVKDERSENQVNAQTFCLVKS  147


>gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bovis AF2122/97]
 gi|121637477|ref|YP_977700.1| putative membrane protein mmpS6 [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224989952|ref|YP_002644639.1| hypothetical protein JTY_1583 [Mycobacterium bovis BCG str. Tokyo 
172]
 17 more sequence titles
 Length=148

 Score =  127 bits (318),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 70/143 (49%), Positives = 89/143 (63%), Gaps = 1/143 (0%)

Query  1    VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR  60
            ++ ISV+G VKR W++L  V V  V G  +YRLH IFG H+  +       D+  FNPK+
Sbjct  1    MQGISVTGLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQ  60

Query  61   VTYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC  119
            VT EVFG P   A I YLD DA   ++   +LPWS T+ TTLPAV  N++AQ +++ I C
Sbjct  61   VTLEVFGAPGTVATINYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGC  120

Query  120  RIIVNGAVKDERSETSPRALTSC  142
            RI VNG VKDER     RA T C
Sbjct  121  RITVNGVVKDERIVNEVRAYTFC  143


>gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 [Mycobacterium africanum GM041182]
 gi|339330983|emb|CCC26655.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=148

 Score =  126 bits (317),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 69/143 (49%), Positives = 89/143 (63%), Gaps = 1/143 (0%)

Query  1    VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR  60
            ++ ISV+G VKR W++L  V V  V G  +YRLH IFG H+  +       D+  FNPK+
Sbjct  1    MQGISVTGLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQ  60

Query  61   VTYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC  119
            VT EVFG P   A + YLD DA   ++   +LPWS T+ TTLPAV  N++AQ +++ I C
Sbjct  61   VTLEVFGAPGTVATVNYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGC  120

Query  120  RIIVNGAVKDERSETSPRALTSC  142
            RI VNG VKDER     RA T C
Sbjct  121  RITVNGVVKDERIVNEVRAYTFC  143


>gi|183983723|ref|YP_001852014.1| membrane protein MmpS5_1 [Mycobacterium marinum M]
 gi|183177049|gb|ACC42159.1| conserved membrane protein MmpS5_1 [Mycobacterium marinum M]
Length=147

 Score =  121 bits (303),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 64/144 (45%), Positives = 85/144 (60%), Gaps = 2/144 (1%)

Query  4    ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTY  63
            I V+  +KR W+ L +VVV  + GL + RLH IFG  E          D+  FNPK V Y
Sbjct  4    IPVTSVLKRAWIPLLMVVVLAISGLVVSRLHKIFG-SEDLNANAGAGIDIVQFNPKVVIY  62

Query  64   EVFGPA-KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            E+ GPA  TA I + D DA  H++++  LPWS T+ TTLP+VS N+MAQ +   I CRI 
Sbjct  63   EISGPAGSTANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRIT  122

Query  123  VNGAVKDERSETSPRALTSCQVSS  146
            V+G V++E+S       T C V S
Sbjct  123  VDGVVREEKSAAGVNPQTFCLVKS  146


>gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172001|gb|ABK72897.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=158

 Score =  120 bits (302),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 60/146 (42%), Positives = 85/146 (59%), Gaps = 1/146 (0%)

Query  2    RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRV  61
            +  S+S   +R W+ L I  V  VG   + R+ + FG  + P++      D   F+PK V
Sbjct  12   KKFSISALARRFWIPLLIGAVVFVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVV  71

Query  62   TYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR  120
             YE++G P  TA I YLD DA+  R+D  +LPWS+T+ TT P+V  N++AQ N D I+CR
Sbjct  72   VYEIYGEPGATADINYLDLDAQPQRVDGATLPWSLTLSTTAPSVFPNIVAQGNGDTITCR  131

Query  121  IIVNGAVKDERSETSPRALTSCQVSS  146
            I V+  +KDER+     A T C V S
Sbjct  132  ITVDDELKDERTSNGVNAQTFCLVKS  157


>gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172400|gb|ABK73296.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=142

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 60/138 (44%), Positives = 85/138 (62%), Gaps = 1/138 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-P  68
            +KR W+ L I VV +VG   + R+ + FG  + P++      D   F+PK V YE++G P
Sbjct  4    LKRFWIPLLIGVVVLVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVVIYEIYGEP  63

Query  69   AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
              TA + YLD DA+  R+D VSLPW++T+ TT P+V  N++AQ N D I+CRI V+  +K
Sbjct  64   GATADVNYLDLDAQPQRVDGVSLPWTLTLSTTAPSVFPNIVAQGNGDSITCRITVDDELK  123

Query  129  DERSETSPRALTSCQVSS  146
            DER+     A T C V S
Sbjct  124  DERTSNGVNAQTFCLVKS  141


>gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycobacterium kansasii ATCC 12478]
Length=139

 Score =  119 bits (298),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 61/137 (45%), Positives = 81/137 (60%), Gaps = 2/137 (1%)

Query  11   KRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGP-A  69
            + +W+ L +V+V  V GL + RLH IFG  +          ++  FNPK VTYEVFGP  
Sbjct  3    RHLWIPLVLVIVLAVSGLVVMRLHRIFGSQDL-NANAGGGIEIVQFNPKVVTYEVFGPPG  61

Query  70   KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD  129
             TA I Y D DA  H++++  LPWSVT+ TTLP+VS N+MAQ +   I CRI V+G V+ 
Sbjct  62   STANINYWDADANTHQVNAAPLPWSVTISTTLPSVSANIMAQGDGSRIGCRITVDGVVRQ  121

Query  130  ERSETSPRALTSCQVSS  146
            E+        T C V S
Sbjct  122  EKKSDGVNPQTFCLVKS  138


>gi|41409848|ref|NP_962684.1| MmpS1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398680|gb|AAS06300.1| MmpS1 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=154

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 70/148 (48%), Positives = 96/148 (65%), Gaps = 1/148 (0%)

Query  1    VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR  60
            V  I V+  VK++W++L IV V  V GL + RL + F   +   +      D+  FNPKR
Sbjct  7    VARIPVAKMVKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKR  66

Query  61   VTYEVFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC  119
            V YEV+GP KT A I YLD +A+  ++ +V+LPW+++V TTLP++SVN++AQ++ D I C
Sbjct  67   VVYEVYGPPKTVADINYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQADTDQIGC  126

Query  120  RIIVNGAVKDERSETSPRALTSCQVSSG  147
            RIIVN  VKDERS    RA T C V S 
Sbjct  127  RIIVNEVVKDERSADGVRAQTFCIVKSA  154


>gi|336460143|gb|EGO39048.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=140

 Score =  118 bits (296),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 68/139 (49%), Positives = 92/139 (67%), Gaps = 1/139 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            VK++W++L IV V  V GL + RL + F   +   +      D+  FNPKRV YEV+GP 
Sbjct  2    VKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKRVVYEVYGPP  61

Query  70   KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
            KT A I YLD +A+  ++ +V+LPW+++V TTLP+VSVN++AQ++ D I CRIIVN  VK
Sbjct  62   KTVADINYLDINAQPQKVANVALPWTLSVITTLPSVSVNVVAQADTDQIGCRIIVNDVVK  121

Query  129  DERSETSPRALTSCQVSSG  147
            DERS    RA T C V S 
Sbjct  122  DERSADGVRAQTFCIVKSA  140


>gi|118618954|ref|YP_907286.1| membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99]
 gi|118571064|gb|ABL05815.1| conserved membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99]
Length=139

 Score =  118 bits (296),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 61/138 (45%), Positives = 81/138 (59%), Gaps = 2/138 (1%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            +KR W+ L +VVV  + G  + RLH IFG  E          D+  FNPK V YE+ GPA
Sbjct  2    LKRAWIPLLMVVVLAISGFVVSRLHKIFG-SEDLNANAGAGIDIVQFNPKVVIYEISGPA  60

Query  70   -KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
              TA I + D DA  H++++  LPWS T+ TTLP+VS N+MAQ +   I CRI V+G V+
Sbjct  61   GSTANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRITVDGVVR  120

Query  129  DERSETSPRALTSCQVSS  146
            +E+S       T C V S
Sbjct  121  EEKSAAGVNPQTFCLVKS  138


>gi|118616542|ref|YP_904874.1| transmembrane proteinm, MmpS5 [Mycobacterium ulcerans Agy99]
 gi|183981027|ref|YP_001849318.1| transmembrane proteinm, MmpS5 [Mycobacterium marinum M]
 gi|118568652|gb|ABL03403.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium ulcerans 
Agy99]
 gi|183174353|gb|ACC39463.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium marinum 
M]
Length=142

 Score =  118 bits (295),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 62/142 (44%), Positives = 85/142 (60%), Gaps = 6/142 (4%)

Query  8    GAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDF---DVPLFNPKRVTYE  64
            G +KR W+ L I+VV  + G  + R+ + FG      ++V P     D   ++PK V YE
Sbjct  3    GILKRAWIPLLILVVVAIAGFTVQRIRTFFGAD---GILVTPKVFANDPEPYDPKVVKYE  59

Query  65   VFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVN  124
            + G    A I YLD DA+  R+D  SLPWS+T++TT P+ + N++AQ N   ISCRIIV+
Sbjct  60   ISGSGSYANINYLDLDAKPQRIDGASLPWSLTLQTTAPSAAPNILAQGNGSSISCRIIVD  119

Query  125  GAVKDERSETSPRALTSCQVSS  146
              VKDER+ T   ALT C V S
Sbjct  120  DVVKDERTATGVDALTYCFVKS  141


>gi|118472449|ref|YP_884986.1| MmpS1 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173736|gb|ABK74632.1| MmpS1 protein [Mycobacterium smegmatis str. MC2 155]
Length=138

 Score =  117 bits (294),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 63/138 (46%), Positives = 85/138 (62%), Gaps = 3/138 (2%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGP-  68
            +K+ W+ L + VV  V GL ++RLH  FG  E          ++  FNPK + YEV+GP 
Sbjct  2    LKQAWIPLVLAVVLPVSGLVVWRLHEKFG-SEDLNANAGAGIEIVQFNPKILVYEVYGPP  60

Query  69   AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
              TA+I+Y D DA VH +++ +LPWSVT+ TTLP VS NLMA  + D I CR+ VNG V+
Sbjct  61   GSTAQISYFDTDANVHSVNT-TLPWSVTLSTTLPTVSANLMALGSNDEIGCRVTVNGIVR  119

Query  129  DERSETSPRALTSCQVSS  146
            +E+S     A T C V S
Sbjct  120  EEKSANGIDAQTYCLVKS  137


>gi|296164372|ref|ZP_06846949.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900275|gb|EFG79704.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=139

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 64/138 (47%), Positives = 91/138 (66%), Gaps = 1/138 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            +K+MW++L IV V  V G  + RL + FGVH+  T+      ++  FNPKRV Y+V+GP 
Sbjct  1    MKKMWIVLVIVAVVAVAGFCVLRLRTFFGVHDDQTMTSGIADEIKPFNPKRVVYQVYGPP  60

Query  70   KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
             T A I YLD +A+  +  +V LPW+++V +TLP+VSVN++AQ +++ I CRIIV+  VK
Sbjct  61   GTVANINYLDINAQPQKASNVPLPWTLSVTSTLPSVSVNIVAQGDSNQIGCRIIVDEVVK  120

Query  129  DERSETSPRALTSCQVSS  146
            DERS     A T C V S
Sbjct  121  DERSSQGMNAQTFCIVKS  138


>gi|118617881|ref|YP_906213.1| membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
 gi|118569991|gb|ABL04742.1| conserved membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
Length=156

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 57/135 (43%), Positives = 78/135 (58%), Gaps = 2/135 (1%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVM-VKPDFDVPLFNPKRVTYEVFG-  67
            +KR WL L + VV  VGG  + R+  +FG  + PT     P   V    PKRV YE+FG 
Sbjct  17   LKRAWLPLVLAVVFAVGGFAVSRVRGMFGSQQLPTYADSTPAGSVSSSGPKRVRYEIFGA  76

Query  68   PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAV  127
            P   A I Y+DP     +L+ V+LPWS+ VET  P++  N++AQ+N D + CRI   G V
Sbjct  77   PGTIADINYMDPAGEAQQLNDVALPWSIEVETDAPSMVANIIAQANTDFLGCRISSGGEV  136

Query  128  KDERSETSPRALTSC  142
            KDER+ ++  A   C
Sbjct  137  KDERTSSAVSAYVYC  151


>gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976 [Mycobacterium intracellulare 
ATCC 13950]
Length=134

 Score =  115 bits (288),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 60/134 (45%), Positives = 79/134 (59%), Gaps = 1/134 (0%)

Query  15   LLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAK  73
            +++  V+V  + G GIYRLH IFG H+  T       ++  FNPK+V  EVFG P   A 
Sbjct  1    MVIVSVLVVALAGFGIYRLHGIFGSHDNTTANSGLAAEIVPFNPKQVVLEVFGAPGAVAT  60

Query  74   IAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSE  133
            I YLD +A+  ++    LPWS T+ TT PAV  N++AQ N D + CRI VNG VKD+R+ 
Sbjct  61   INYLDVNAQPQQVKDAPLPWSFTITTTEPAVIGNVVAQGNGDTLGCRITVNGEVKDQRTV  120

Query  134  TSPRALTSCQVSSG  147
                A T C   SG
Sbjct  121  HKVDAYTFCLDKSG  134


>gi|15607817|ref|NP_215191.1| hypothetical protein Rv0677c [Mycobacterium tuberculosis H37Rv]
 gi|15840080|ref|NP_335117.1| MmpS family membrane protein [Mycobacterium tuberculosis CDC1551]
 gi|31791861|ref|NP_854354.1| hypothetical protein Mb0696c [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=142

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 60/142 (43%), Positives = 84/142 (60%), Gaps = 6/142 (4%)

Query  8    GAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDF---DVPLFNPKRVTYE  64
            G +KR W+ L I+VV  + G  + R+ + FG      ++V P     D   F+PK V YE
Sbjct  3    GTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSE---GILVTPKVFADDPEPFDPKVVEYE  59

Query  65   VFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVN  124
            V G      I YLD DA+  R+D  +LPWS+T++TT P+ + N++AQ +   I+CRI V+
Sbjct  60   VSGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVD  119

Query  125  GAVKDERSETSPRALTSCQVSS  146
            G VKDER+ T   ALT C V S
Sbjct  120  GEVKDERTATGVDALTYCFVKS  141


>gi|240172456|ref|ZP_04751115.1| membrane transporter [Mycobacterium kansasii ATCC 12478]
Length=143

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 60/138 (44%), Positives = 83/138 (61%), Gaps = 1/138 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            +KR W+ L +V+  V GG+ + RL  +FG     T        +   N KRVTYEVFGPA
Sbjct  5    LKRGWIPLVVVIALVAGGIAVDRLRGVFGSDPIFTWTGANSGVIESINTKRVTYEVFGPA  64

Query  70   KTA-KIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
             TA  ++YL+ + +  +    SLPW+ T+ TT+PAV  N++AQ N+D I CRI VNGAVK
Sbjct  65   GTAGSVSYLNKETQPEQASFTSLPWTYTMTTTIPAVIANVVAQGNSDSIGCRITVNGAVK  124

Query  129  DERSETSPRALTSCQVSS  146
            DE+S +   A   C V +
Sbjct  125  DEQSSSGHHAQAFCLVKA  142


>gi|183981710|ref|YP_001850001.1| hypothetical protein MMAR_1696 [Mycobacterium marinum M]
 gi|183175036|gb|ACC40146.1| conserved membrane protein [Mycobacterium marinum M]
Length=143

 Score =  114 bits (286),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 63/139 (46%), Positives = 81/139 (59%), Gaps = 1/139 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-P  68
            V+R W+++  V V V+ G  IYRLH IFG H   +       ++  FNPK+V  +VFG P
Sbjct  5    VRRGWMMIVAVAVVVIAGFAIYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDVFGAP  64

Query  69   AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
               A I YLD +A+  ++    LPWS T+ TT PAV  N++AQ N   I CRI VNG VK
Sbjct  65   GAVATINYLDVNAQPQQVVDAPLPWSFTITTTEPAVLGNVVAQGNGGTIGCRITVNGEVK  124

Query  129  DERSETSPRALTSCQVSSG  147
            DER   +P A T C   SG
Sbjct  125  DERIVNTPDAYTFCLDKSG  143


>gi|342858162|ref|ZP_08714817.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT 
3035]
 gi|342133866|gb|EGT87046.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT 
3035]
Length=148

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 62/148 (42%), Positives = 87/148 (59%), Gaps = 1/148 (0%)

Query  1    VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR  60
            ++  S++  +KR W+++  V+V  + G GIYRLH I   H   +       ++  FNPK+
Sbjct  1    MKSFSIAPLLKRGWMVVVAVLVVALAGFGIYRLHGILWSHTSTSANSGLSNEIVPFNPKQ  60

Query  61   VTYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC  119
            V  EVFG P  TA I YLD +A+  ++   SLPWS T+ TT PAV  N++AQ + D + C
Sbjct  61   VVLEVFGAPGATATINYLDVNAQPQQVKDASLPWSFTITTTEPAVIGNVVAQGDGDTLGC  120

Query  120  RIIVNGAVKDERSETSPRALTSCQVSSG  147
            RI VNG VKD+R+     A T C   SG
Sbjct  121  RITVNGEVKDQRTVNKVDAYTFCLDKSG  148


>gi|333989815|ref|YP_004522429.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
 gi|333485783|gb|AEF35175.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
Length=141

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 59/139 (43%), Positives = 85/139 (62%), Gaps = 3/139 (2%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVTYEVFGP  68
            + R+WL + IV     G + + +L ++FG H  P V+     D    FNPK VTYEVFG 
Sbjct  5    ISRVWLPVVIVAAVTAGAVTVAQLRTVFGSH--PVVITDISSDNAEDFNPKFVTYEVFGS  62

Query  69   AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
              TA I Y+D + +  R+ S +LPW++T++TTLP+V  N++AQS+ D ISCR+ V+  VK
Sbjct  63   GTTAVINYMDLEGKPQRIPSAALPWTLTLQTTLPSVMPNILAQSDGDSISCRVTVDDEVK  122

Query  129  DERSETSPRALTSCQVSSG  147
             ER+ T   A T C V + 
Sbjct  123  QERTATGVNAETFCFVKAA  141


>gi|254819607|ref|ZP_05224608.1| MmpS4 protein [Mycobacterium intracellulare ATCC 13950]
Length=132

 Score =  113 bits (283),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 53/127 (42%), Positives = 75/127 (60%), Gaps = 1/127 (0%)

Query  17   LAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPAKT-AKIA  75
            + IV V + GG+ + RLH +FG   +P+       D   FNPK V YEVFGPA T A I+
Sbjct  1    MVIVAVVIAGGMTVSRLHGVFGSEHRPSYAESRQQDTKPFNPKHVKYEVFGPAGTMADIS  60

Query  76   YLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSETS  135
            Y D +   + +  + LPW+  + TTLP++  N++AQ N+D + CRI+V+G VK ER    
Sbjct  61   YFDANGEPNHITGIVLPWTFDISTTLPSIVGNVVAQGNSDTLGCRIVVDGVVKTERISHQ  120

Query  136  PRALTSC  142
              A T C
Sbjct  121  LNAFTYC  127


>gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_4018 [Mycobacterium sp. JDM601]
 gi|333488626|gb|AEF38018.1| membrane protein MmpS4_2 [Mycobacterium sp. JDM601]
Length=148

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 56/134 (42%), Positives = 81/134 (61%), Gaps = 1/134 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            + R+W+ L I+ V  V G  + R+H +FG  ++P+       +   FNPKR+TYE+FGP 
Sbjct  10   LSRVWIPLVILAVVGVAGFTVTRIHGLFGSEKRPSYADGQIDETKPFNPKRMTYEIFGPP  69

Query  70   KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
             T A I+Y D ++   R+  V+LPW + + TTLPAV  ++MAQ N++ I CRI V+G VK
Sbjct  70   GTVADISYFDVNSEPQRVQDVALPWQLEIVTTLPAVVGSIMAQGNSNSIGCRITVDGEVK  129

Query  129  DERSETSPRALTSC  142
             ER      A T C
Sbjct  130  AERISNEVNAYTFC  143


>gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
 gi|82393549|gb|ABB72060.1| MmpS4 [Mycobacterium smegmatis str. MC2 155]
 gi|118175211|gb|ABK76107.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
Length=139

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 54/134 (41%), Positives = 80/134 (60%), Gaps = 1/134 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            ++R+W+ L ++ V  VGG  + RLH++FG  ++P+       D   F+PKR+TYEVFGP 
Sbjct  1    MRRLWIPLLVIAVVAVGGFTVSRLHNVFGAEKRPSYADTKAADSKPFDPKRLTYEVFGPP  60

Query  70   KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
             T A I+Y D D+    ++ VSLPWS+  +        ++MAQ ++D I CRIIV+  VK
Sbjct  61   GTLADISYFDEDSNPQFVEKVSLPWSLHFDIGKTTAVGSIMAQGDSDTIGCRIIVDDEVK  120

Query  129  DERSETSPRALTSC  142
             E+      A TSC
Sbjct  121  AEKVSNQTNAFTSC  134


>gi|183981736|ref|YP_001850027.1| membrane protein MmpS1 [Mycobacterium marinum M]
 gi|183175062|gb|ACC40172.1| conserved membrane protein MmpS1 [Mycobacterium marinum M]
Length=142

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 60/138 (44%), Positives = 84/138 (61%), Gaps = 2/138 (1%)

Query  11   KRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPAK  70
            +RMW+ + +++VA+VG   + RLH +FG H         D  V  FNPK V YEVFGP  
Sbjct  6    RRMWVPIVMILVAIVGASVVMRLHGVFGSHRYVPDAGNSDAIVA-FNPKYVRYEVFGPPG  64

Query  71   TA-KIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD  129
            T   + YLD  A  H + + ++PWS+T+ TTL +V  +L+AQ N+  +SCRI VNG V+ 
Sbjct  65   TVVTVNYLDAQAEPHEVANAAIPWSLTIVTTLTSVVAHLVAQGNSATLSCRITVNGVVRA  124

Query  130  ERSETSPRALTSCQVSSG  147
            ER+  +  A TSC V S 
Sbjct  125  ERTADAHDAATSCLVKSA  142


>gi|5524339|gb|AAD44232.1|AF143772_38 TmtpA [Mycobacterium avium]
Length=221

 Score =  112 bits (281),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/136 (45%), Positives = 82/136 (61%), Gaps = 1/136 (0%)

Query  8    GAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG  67
            G +KR+W+ L IV V V GGL + RLH IFG  ++P+       D   FNPK V YEVFG
Sbjct  81   GFLKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQDTKPFNPKHVKYEVFG  140

Query  68   PAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGA  126
            PA   A I+Y D +     ++ V LPW+  + TTLP++  N++AQ N+D + CRI+V+G 
Sbjct  141  PAGAMADISYFDANGEPQHINGVELPWTFDISTTLPSIVGNVVAQGNSDSLGCRILVDGV  200

Query  127  VKDERSETSPRALTSC  142
            VK ER      A T C
Sbjct  201  VKTERISHELNAFTYC  216


>gi|240171020|ref|ZP_04749679.1| hypothetical protein MkanA1_17040 [Mycobacterium kansasii ATCC 
12478]
Length=134

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 60/129 (47%), Positives = 78/129 (61%), Gaps = 1/129 (0%)

Query  15   LLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAK  73
            +LL  VVV    G G+YRLH IFG  +  +       ++  FNPK+VT EVFG P   A 
Sbjct  1    MLLVAVVVVAAAGFGVYRLHGIFGSQDDTSAAGGISNEIIPFNPKQVTLEVFGAPGTVAT  60

Query  74   IAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSE  133
            I YLD +A+  ++   +LPWS T+ TT PAV  N++AQ N++ I CRI VNG VKDER+ 
Sbjct  61   INYLDVNAQPQQVLDTTLPWSYTITTTQPAVFANVVAQGNSNSIGCRITVNGVVKDERTV  120

Query  134  TSPRALTSC  142
                A T C
Sbjct  121  NKVNAYTFC  129


>gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
 gi|169242198|emb|CAM63226.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=143

 Score =  112 bits (279),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 54/138 (40%), Positives = 78/138 (57%), Gaps = 1/138 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-P  68
            ++++W+ L I  V  +GG  ++R+  IFG             D   +NPK + YE+FG P
Sbjct  5    IRKIWMPLLIAAVVAIGGFAVFRVRGIFGSESFGASADNNAKDAVPYNPKTLVYEIFGEP  64

Query  69   AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
               A + Y + DA+  R+D+V LPW+  + +TLP++S N++AQ N D I CRI VNG VK
Sbjct  65   GAMADVNYFNEDAQPTRVDNVQLPWAFKIVSTLPSLSGNIVAQGNGDQIGCRITVNGEVK  124

Query  129  DERSETSPRALTSCQVSS  146
             ER  T   A   C V S
Sbjct  125  MERVSTEHNAYIYCLVKS  142


>gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_22360 [Mycobacterium kansasii ATCC 
12478]
Length=149

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 57/146 (40%), Positives = 83/146 (57%), Gaps = 1/146 (0%)

Query  2    RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRV  61
            +M ++  A+KR+W+ L + +     G  +YRLH IFG      +      ++  FNPK+V
Sbjct  3    QMTAILSALKRLWIPLVVSLTVATSGFTVYRLHGIFGAAGFSAISNGHADEIVPFNPKQV  62

Query  62   TYEVFGP-AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR  120
             YEV GP   T  I+YLD +A   +     LPW+ T  TT+PAV  NL+AQ +++ I CR
Sbjct  63   RYEVVGPPGTTGSISYLDENAAPQQARFTMLPWTHTFTTTIPAVFANLVAQGDSNAIGCR  122

Query  121  IIVNGAVKDERSETSPRALTSCQVSS  146
            I VNG +K+++  T   A T C V S
Sbjct  123  ISVNGEIKEQQYATEVNAQTFCLVKS  148


>gi|41407339|ref|NP_960175.1| MmpS4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118464605|ref|YP_882429.1| MmpS4 protein [Mycobacterium avium 104]
 gi|254775696|ref|ZP_05217212.1| MmpS4 protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41395691|gb|AAS03558.1| MmpS4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165892|gb|ABK66789.1| MmpS4 protein [Mycobacterium avium 104]
 gi|336457975|gb|EGO36963.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=139

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 60/134 (45%), Positives = 81/134 (61%), Gaps = 1/134 (0%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA  69
            +KR+W+ L IV V V GGL + RLH IFG  ++P+       D   FNPK V YEVFGPA
Sbjct  1    MKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQDTKPFNPKHVKYEVFGPA  60

Query  70   KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
               A I+Y D +     ++ V LPW+  + TTLP++  N++AQ N+D + CRI+V+G VK
Sbjct  61   GAMADISYFDANGEPQHINGVELPWTFDISTTLPSIVGNVVAQGNSDSLGCRILVDGVVK  120

Query  129  DERSETSPRALTSC  142
             ER      A T C
Sbjct  121  TERISHELNAFTYC  134


>gi|296165068|ref|ZP_06847621.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899561|gb|EFG79014.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=144

 Score =  110 bits (275),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 61/144 (43%), Positives = 80/144 (56%), Gaps = 2/144 (1%)

Query  4    ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVT  62
            + VS  V+  WL L IV V VVGG  + R+ S FG H+   ++  P  D    F PK V 
Sbjct  1    MQVSKVVRNAWLPLLIVAVLVVGGFAVARVKSFFGAHDT-GILTSPRLDDSKPFKPKVVK  59

Query  63   YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            YEVFG A +A + YLD  A   R+D   LPW++ + TT P+V  NL AQS+ + + CRI 
Sbjct  60   YEVFGSASSANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRIT  119

Query  123  VNGAVKDERSETSPRALTSCQVSS  146
            ++  VK E       ALT C V S
Sbjct  120  IDDEVKAENMTHGVHALTFCMVKS  143


>gi|118617551|ref|YP_905883.1| membrane protein MmpS1 [Mycobacterium ulcerans Agy99]
 gi|118569661|gb|ABL04412.1| conserved membrane protein MmpS1 [Mycobacterium ulcerans Agy99]
Length=135

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 60/136 (45%), Positives = 82/136 (61%), Gaps = 2/136 (1%)

Query  13   MWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPAKTA  72
            MW+ + +V+VA+VG   + RLH +FG H         D  V  FNPK V YEVFGP  T 
Sbjct  1    MWVPIVMVLVAIVGASVVMRLHGVFGSHRYVPDAGNSDAIV-AFNPKYVRYEVFGPPGTV  59

Query  73   -KIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDER  131
              + YLD  A  H + + ++PWS+T+ TTL +V  +L+AQ N+  +SCRI VNG V+ ER
Sbjct  60   VTVNYLDAQAEPHEVANAAIPWSLTIVTTLTSVVAHLVAQGNSATLSCRITVNGVVRAER  119

Query  132  SETSPRALTSCQVSSG  147
            +  +  A TSC V S 
Sbjct  120  TADAHDAATSCPVKSA  135


>gi|254820611|ref|ZP_05225612.1| MmpS5 protein [Mycobacterium intracellulare ATCC 13950]
Length=138

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 60/138 (44%), Positives = 77/138 (56%), Gaps = 2/138 (1%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPL-FNPKRVTYEVFGP  68
            ++  WL L IV V +VGG  + R+ S FG H+   VM  P  D    F PK V YEVFG 
Sbjct  1    MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDT-GVMTSPRLDESKPFKPKVVKYEVFGS  59

Query  69   AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
            A  A + YLD  A   R+D   LPW++ + TT P+V  NL AQS+ + + CRI ++  VK
Sbjct  60   AAQANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRITIDDEVK  119

Query  129  DERSETSPRALTSCQVSS  146
            DE       ALT C V S
Sbjct  120  DENLTHGVHALTFCMVKS  137


>gi|118462696|ref|YP_881703.1| MmpS5 protein [Mycobacterium avium 104]
 gi|118163983|gb|ABK64880.1| MmpS5 protein [Mycobacterium avium 104]
Length=144

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 60/145 (42%), Positives = 80/145 (56%), Gaps = 2/145 (1%)

Query  4    ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVT  62
            + +S  V+  WL L IV V +VGG  + R+ S FG H+   ++  P  D    F PK V 
Sbjct  1    MQISRLVRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDT-GILTSPRLDDSKPFKPKVVK  59

Query  63   YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            YEVFG A  A + YLD  A   R+D   LPW++ + TT P+V  NL AQS+ + + CRI 
Sbjct  60   YEVFGSASQANVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRIT  119

Query  123  VNGAVKDERSETSPRALTSCQVSSG  147
            ++  VKDE       ALT C V S 
Sbjct  120  IDDEVKDENITHGVHALTFCLVKSA  144


>gi|118464951|ref|YP_880981.1| Mmps1 protein [Mycobacterium avium 104]
 gi|254774572|ref|ZP_05216088.1| Mmps1 protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118166238|gb|ABK67135.1| Mmps1 protein [Mycobacterium avium 104]
Length=130

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 57/129 (45%), Positives = 76/129 (59%), Gaps = 2/129 (1%)

Query  19   IVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAKIAYL  77
            +VVV  V  L + RLH IFG  E          ++  FNPK V YE+ G P  TA I Y 
Sbjct  2    LVVVLAVSALIVSRLHKIFG-SEDLNANAGKGIEIVQFNPKVVVYEISGAPGSTANINYW  60

Query  78   DPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSETSPR  137
            D +A  H++++  LPWS T+ TTLP+VS N+MAQS+   ISC+I V+G V+D ++     
Sbjct  61   DENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDNQNSDGHN  120

Query  138  ALTSCQVSS  146
            A T C V S
Sbjct  121  AQTFCLVKS  129


>gi|342858823|ref|ZP_08715478.1| MmpS4 protein [Mycobacterium colombiense CECT 3035]
 gi|342134527|gb|EGT87707.1| MmpS4 protein [Mycobacterium colombiense CECT 3035]
Length=159

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 57/139 (42%), Positives = 83/139 (60%), Gaps = 1/139 (0%)

Query  5    SVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYE  64
             + G + R+W+ L IV V V GG+ + RLH +FG  ++P+       D   FNPK V YE
Sbjct  16   GIFGFLGRLWIPLVIVAVVVAGGMTVSRLHGVFGSEKRPSYAESRQQDTKPFNPKHVKYE  75

Query  65   VFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIV  123
            VFGPA + A I+Y D +   + +  + LPW+  + TTLP++  N++AQ N+D + CRI+V
Sbjct  76   VFGPAGSMADISYFDANGEPNHITGIELPWTFDISTTLPSIVGNVVAQGNSDSLGCRIVV  135

Query  124  NGAVKDERSETSPRALTSC  142
            +G VK ER      A T C
Sbjct  136  DGVVKAERISHELNAFTYC  154


>gi|333992781|ref|YP_004525395.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
 gi|333488749|gb|AEF38141.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
Length=141

 Score =  109 bits (272),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 68/139 (49%), Positives = 87/139 (63%), Gaps = 2/139 (1%)

Query  9    AVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-  67
            A+KR WL L IVVV V+G L + RL + FG  +   +  K D D   +NPK VTYEVFG 
Sbjct  3    ALKRGWLPLLIVVVLVLGTLTVLRLRTFFGGEDSSLISTKVD-DTKPYNPKVVTYEVFGE  61

Query  68   PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAV  127
            P  TA I+YLD D+R  R+D   LPW+VT+ TTL AVS NL AQ     + CRI ++  +
Sbjct  62   PGATADISYLDLDSRPQRVDDAVLPWAVTLSTTLSAVSPNLYAQGKGSTLGCRISIDDEL  121

Query  128  KDERSETSPRALTSCQVSS  146
            KDER+ T   A+T C V +
Sbjct  122  KDERTATGASAMTFCLVKA  140


>gi|145223615|ref|YP_001134293.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
 gi|145216101|gb|ABP45505.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
Length=141

 Score =  109 bits (272),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 63/144 (44%), Positives = 82/144 (57%), Gaps = 4/144 (2%)

Query  3    MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT  62
            MI+V   VKR+WL + IVV   +G + I  L S+FG +      V  D     FNP  VT
Sbjct  1    MITV---VKRVWLPVLIVVALAIGFVSISYLRSVFGSNGAVVTPVGSD-TAEDFNPTVVT  56

Query  63   YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            YEVFG    A I Y D D    R   VSLPW++T+ETT+P+V  +L+AQ N   I CR+ 
Sbjct  57   YEVFGTGSFAVINYTDLDGLPQRTGQVSLPWTLTLETTIPSVRPDLLAQGNGQFIGCRVT  116

Query  123  VNGAVKDERSETSPRALTSCQVSS  146
            V+G V+DER+     A T C V +
Sbjct  117  VDGEVEDERTAEGVNAATYCLVKA  140


>gi|315442510|ref|YP_004075389.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
 gi|315260813|gb|ADT97554.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
Length=141

 Score =  108 bits (271),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 63/144 (44%), Positives = 83/144 (58%), Gaps = 4/144 (2%)

Query  3    MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT  62
            MISV   VKR+WL + ++    VG   +  L S+FG  +     V  D     FNPK VT
Sbjct  1    MISV---VKRIWLPVLVIAAVAVGAGAVANLRSVFGSDKAIVTPVDAD-TAENFNPKVVT  56

Query  63   YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII  122
            YEVFG   +A I Y D D +  R   V LPWS+T+ETTLP+V  N+MAQ +   ++CR+ 
Sbjct  57   YEVFGSGTSATINYADLDGKPQRTGEVGLPWSLTLETTLPSVMPNIMAQGDGHSLTCRVT  116

Query  123  VNGAVKDERSETSPRALTSCQVSS  146
            V+G VKDER+     A T C V +
Sbjct  117  VDGEVKDERTAEGMNAATYCLVKA  140


>gi|118617529|ref|YP_905861.1| hypothetical protein MUL_1935 [Mycobacterium ulcerans Agy99]
 gi|118569639|gb|ABL04390.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=134

 Score =  108 bits (271),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 57/122 (47%), Positives = 70/122 (58%), Gaps = 1/122 (0%)

Query  27   GLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAKIAYLDPDARVHR  85
            G  IYRLH IFG H   +       ++  FNPK+V  +VFG P   A I YLD +A+  +
Sbjct  13   GFAIYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDVFGAPGAVATINYLDVNAQPQQ  72

Query  86   LDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSETSPRALTSCQVS  145
            +    LPWS T+ TT PAV  N++AQ N   I CRI VNG VKDER   +P A T C   
Sbjct  73   VVDAPLPWSFTITTTEPAVLGNMVAQGNGGTIGCRITVNGEVKDERIVNTPDAYTFCLDK  132

Query  146  SG  147
            SG
Sbjct  133  SG  134


>gi|120404167|ref|YP_953996.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
 gi|119956985|gb|ABM13990.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
Length=142

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 60/149 (41%), Positives = 87/149 (59%), Gaps = 11/149 (7%)

Query  3    MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVH---EQPTVMVKPDFDVPL-FNP  58
            MI+++   K++WL L IVVV  + GL + R+ + FG     E P        D+P  F+P
Sbjct  1    MIAIA---KKVWLPLLIVVVVAIAGLTVARIRTFFGAEGIIETPRNFA----DLPEPFDP  53

Query  59   KRVTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVIS  118
            K V YE+ G    A + YLD DA+  R+D  +LPWS+T+ETT P+ + N++AQ +   I+
Sbjct  54   KVVRYEITGSGSYADVNYLDLDAKPQRVDGAALPWSLTLETTEPSAAPNIVAQGDGSTIT  113

Query  119  CRIIVNGAVKDERSETSPRALTSCQVSSG  147
            CRI V+  +KDER+     A T C V S 
Sbjct  114  CRIFVDDELKDERTTDGLNAQTFCFVKSA  142


>gi|296167298|ref|ZP_06849700.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897242|gb|EFG76846.1| MmpS family membrane protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=143

 Score =  108 bits (269),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 60/141 (43%), Positives = 84/141 (60%), Gaps = 5/141 (3%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNP--KRVTYEVFG  67
            +KR W+ L +V    +GG+ I RL  +FG    P          PL     KRVTYEV+G
Sbjct  5    LKRAWVPLVVVAAVALGGIAIDRLRGVFG--SDPIFTATGSSAEPLVASHIKRVTYEVYG  62

Query  68   PA-KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGA  126
            P+  T  ++YL+ +A+  + D  +LPW+ T+ TT+PAV  +++AQ ++D I CRI VNG 
Sbjct  63   PSGTTGSVSYLNKNAQPEQADFSTLPWTFTITTTVPAVIASVVAQGDSDDIGCRISVNGE  122

Query  127  VKDERSETSPRALTSCQVSSG  147
            VKDERS     A TSC V +G
Sbjct  123  VKDERSSAGRNAQTSCLVKAG  143


>gi|41407835|ref|NP_960671.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254775167|ref|ZP_05216683.1| MmpS5 protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41396189|gb|AAS04054.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=138

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 58/138 (43%), Positives = 77/138 (56%), Gaps = 2/138 (1%)

Query  10   VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVTYEVFGP  68
            ++  WL L IV V +VGG  + R+ S FG H+   ++  P  D    F PK V YEVFG 
Sbjct  1    MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDT-GILTSPRLDDSKPFKPKVVKYEVFGS  59

Query  69   AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK  128
            A  A + YLD  A   R+D   LPW++ + TT P+V  NL AQS+ + + CRI ++  VK
Sbjct  60   ASQANVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRITIDDEVK  119

Query  129  DERSETSPRALTSCQVSS  146
            DE       ALT C V S
Sbjct  120  DENITHGVHALTFCLVKS  137


>gi|118468420|ref|YP_885767.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118169707|gb|ABK70603.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=138

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 56/136 (42%), Positives = 83/136 (62%), Gaps = 3/136 (2%)

Query  12   RMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVTYEVFGPAK  70
            R+WL + IVV    G L +  + ++FG    P V+ +   D    FNPK VTYE+FG   
Sbjct  4    RIWLPVLIVVAVAAGALIVMNVRTVFG--SNPVVVTEKTSDNAEDFNPKVVTYEIFGSGS  61

Query  71   TAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDE  130
            +A I Y+D +    R++S  LPWS+T++TTLP+V  ++MAQ + D I+CR+ V+  VK+E
Sbjct  62   SAVINYMDLEGMPQRVESTPLPWSLTLQTTLPSVMPHIMAQGDGDSITCRVTVDDVVKEE  121

Query  131  RSETSPRALTSCQVSS  146
            R+ T   A T C V +
Sbjct  122  RTATGMNAETFCYVKA  137



Lambda     K      H
   0.321    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131150363096




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40