BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0506
Length=147
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607647|ref|NP_215020.1| membrane protein [Mycobacterium tub... 298 2e-79
gi|15839899|ref|NP_334936.1| hypothetical protein MT0527 [Mycoba... 295 1e-78
gi|340625534|ref|YP_004743986.1| hypothetical protein MCAN_05091... 294 3e-78
gi|339293555|gb|AEJ45666.1| membrane protein [Mycobacterium tube... 281 2e-74
gi|183980864|ref|YP_001849155.1| MmpS-family membrane protein [M... 209 1e-52
gi|240171914|ref|ZP_04750573.1| MmpS-family membrane protein [My... 197 3e-49
gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 ... 140 5e-32
gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_1100... 136 1e-30
gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bov... 127 6e-28
gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 ... 126 1e-27
gi|183983723|ref|YP_001852014.1| membrane protein MmpS5_1 [Mycob... 121 4e-26
gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegm... 120 6e-26
gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegm... 119 1e-25
gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycoba... 119 1e-25
gi|41409848|ref|NP_962684.1| MmpS1 [Mycobacterium avium subsp. p... 119 2e-25
gi|336460143|gb|EGO39048.1| Mycobacterium membrane protein [Myco... 118 3e-25
gi|118618954|ref|YP_907286.1| membrane protein MmpS5_1 [Mycobact... 118 3e-25
gi|118616542|ref|YP_904874.1| transmembrane proteinm, MmpS5 [Myc... 118 3e-25
gi|118472449|ref|YP_884986.1| MmpS1 protein [Mycobacterium smegm... 117 5e-25
gi|296164372|ref|ZP_06846949.1| MmpS family membrane protein [My... 115 2e-24
gi|118617881|ref|YP_906213.1| membrane protein MmpS4 [Mycobacter... 115 2e-24
gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976... 115 2e-24
gi|15607817|ref|NP_215191.1| hypothetical protein Rv0677c [Mycob... 115 3e-24
gi|240172456|ref|ZP_04751115.1| membrane transporter [Mycobacter... 115 3e-24
gi|183981710|ref|YP_001850001.1| hypothetical protein MMAR_1696 ... 114 3e-24
gi|342858162|ref|ZP_08714817.1| hypothetical protein MCOL_04791 ... 114 6e-24
gi|333989815|ref|YP_004522429.1| transmembrane proteinm MmpS5 [M... 114 6e-24
gi|254819607|ref|ZP_05224608.1| MmpS4 protein [Mycobacterium int... 113 8e-24
gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_401... 113 1e-23
gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegm... 113 1e-23
gi|183981736|ref|YP_001850027.1| membrane protein MmpS1 [Mycobac... 113 1e-23
gi|5524339|gb|AAD44232.1|AF143772_38 TmtpA [Mycobacterium avium] 112 2e-23
gi|240171020|ref|ZP_04749679.1| hypothetical protein MkanA1_1704... 112 2e-23
gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacter... 112 3e-23
gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_2236... 111 3e-23
gi|41407339|ref|NP_960175.1| MmpS4 [Mycobacterium avium subsp. p... 111 4e-23
gi|296165068|ref|ZP_06847621.1| MmpS family membrane protein [My... 110 8e-23
gi|118617551|ref|YP_905883.1| membrane protein MmpS1 [Mycobacter... 110 1e-22
gi|254820611|ref|ZP_05225612.1| MmpS5 protein [Mycobacterium int... 110 1e-22
gi|118462696|ref|YP_881703.1| MmpS5 protein [Mycobacterium avium... 109 1e-22
gi|118464951|ref|YP_880981.1| Mmps1 protein [Mycobacterium avium... 109 1e-22
gi|342858823|ref|ZP_08715478.1| MmpS4 protein [Mycobacterium col... 109 1e-22
gi|333992781|ref|YP_004525395.1| transmembrane proteinm MmpS5 [M... 109 1e-22
gi|145223615|ref|YP_001134293.1| membrane family protein [Mycoba... 109 1e-22
gi|315442510|ref|YP_004075389.1| mycobacterium membrane protein ... 108 2e-22
gi|118617529|ref|YP_905861.1| hypothetical protein MUL_1935 [Myc... 108 2e-22
gi|120404167|ref|YP_953996.1| hypothetical protein Mvan_3188 [My... 108 3e-22
gi|296167298|ref|ZP_06849700.1| MmpS family membrane protein [My... 108 4e-22
gi|41407835|ref|NP_960671.1| MmpS5 [Mycobacterium avium subsp. p... 107 5e-22
gi|118468420|ref|YP_885767.1| MmpS5 protein [Mycobacterium smegm... 107 5e-22
>gi|15607647|ref|NP_215020.1| membrane protein [Mycobacterium tuberculosis H37Rv]
gi|31791688|ref|NP_854181.1| membrane protein [Mycobacterium bovis AF2122/97]
gi|121636424|ref|YP_976647.1| putative membrane protein mmpS2 [Mycobacterium bovis BCG str.
Pasteur 1173P2]
47 more sequence titles
Length=147
Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/147 (99%), Positives = 147/147 (100%), Gaps = 0/147 (0%)
Query 1 VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR 60
+RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR
Sbjct 1 MRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR 60
Query 61 VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR 120
VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR
Sbjct 61 VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR 120
Query 121 IIVNGAVKDERSETSPRALTSCQVSSG 147
IIVNGAVKDERSETSPRALTSCQVSSG
Sbjct 121 IIVNGAVKDERSETSPRALTSCQVSSG 147
>gi|15839899|ref|NP_334936.1| hypothetical protein MT0527 [Mycobacterium tuberculosis CDC1551]
gi|254363468|ref|ZP_04979514.1| membrane protein mmpS2 [Mycobacterium tuberculosis str. Haarlem]
gi|308231568|ref|ZP_07412944.2| membrane protein mmpS2 [Mycobacterium tuberculosis SUMu001]
28 more sequence titles
Length=145
Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 3 MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT 62
MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT
Sbjct 1 MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT 60
Query 63 YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII
Sbjct 61 YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 120
Query 123 VNGAVKDERSETSPRALTSCQVSSG 147
VNGAVKDERSETSPRALTSCQVSSG
Sbjct 121 VNGAVKDERSETSPRALTSCQVSSG 145
>gi|340625534|ref|YP_004743986.1| hypothetical protein MCAN_05091 [Mycobacterium canettii CIPT
140010059]
gi|340003724|emb|CCC42849.1| putative conserved membrane protein MMPS2 [Mycobacterium canettii
CIPT 140010059]
Length=147
Score = 294 bits (753), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/147 (99%), Positives = 146/147 (99%), Gaps = 0/147 (0%)
Query 1 VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR 60
+RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVP FNPKR
Sbjct 1 MRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPPFNPKR 60
Query 61 VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR 120
VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR
Sbjct 61 VTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR 120
Query 121 IIVNGAVKDERSETSPRALTSCQVSSG 147
IIVNGAVKDERSETSPRALTSCQVSSG
Sbjct 121 IIVNGAVKDERSETSPRALTSCQVSSG 147
>gi|339293555|gb|AEJ45666.1| membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339297196|gb|AEJ49306.1| membrane protein [Mycobacterium tuberculosis CCDC5180]
Length=138
Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/138 (99%), Positives = 138/138 (100%), Gaps = 0/138 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
+KRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA
Sbjct 1 MKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 60
Query 70 KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD 129
KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD
Sbjct 61 KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD 120
Query 130 ERSETSPRALTSCQVSSG 147
ERSETSPRALTSCQVSSG
Sbjct 121 ERSETSPRALTSCQVSSG 138
>gi|183980864|ref|YP_001849155.1| MmpS-family membrane protein [Mycobacterium marinum M]
gi|183174190|gb|ACC39300.1| conserved membrane protein MmpS-family [Mycobacterium marinum
M]
Length=145
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/145 (69%), Positives = 118/145 (82%), Gaps = 0/145 (0%)
Query 3 MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT 62
MI V+ V+RMWLLLA++ VA+V GLGIYRLH +FGVHEQP V D DVP FNPK VT
Sbjct 1 MIPVTSVVRRMWLLLAVMGVALVAGLGIYRLHRVFGVHEQPVVQAAADTDVPQFNPKYVT 60
Query 63 YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
YEV+GPA +A+IAYLDPDA V +L V LPWS TV T+LPAVSVNL+AQSNA+ +SCRI+
Sbjct 61 YEVYGPAPSARIAYLDPDAHVRQLSDVPLPWSQTVSTSLPAVSVNLLAQSNAEELSCRIL 120
Query 123 VNGAVKDERSETSPRALTSCQVSSG 147
VNGAVKD+RS + P+ALT CQV+S
Sbjct 121 VNGAVKDQRSVSRPKALTFCQVTSA 145
>gi|240171914|ref|ZP_04750573.1| MmpS-family membrane protein [Mycobacterium kansasii ATCC 12478]
Length=138
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/138 (73%), Positives = 110/138 (80%), Gaps = 0/138 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
+KRMWLLLA+ VA+V LGIYRLH +FG HE P V K D DVPLFNPK+V YEVFGPA
Sbjct 1 MKRMWLLLAVSAVAIVAALGIYRLHRVFGAHEHPAVTAKADIDVPLFNPKQVIYEVFGPA 60
Query 70 KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD 129
TA+IAYLDPDARV +L V LPWS TV TTLPAVSVNLMAQS A+ I CRIIVNG VKD
Sbjct 61 STARIAYLDPDARVVQLPDVPLPWSQTVNTTLPAVSVNLMAQSAAETIGCRIIVNGTVKD 120
Query 130 ERSETSPRALTSCQVSSG 147
ERS T P+ALT CQV+S
Sbjct 121 ERSVTRPKALTFCQVTSA 138
>gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 [Mycobacterium marinum M]
gi|183174124|gb|ACC39234.1| conserved membrane protein [Mycobacterium marinum M]
Length=148
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/145 (52%), Positives = 92/145 (64%), Gaps = 1/145 (0%)
Query 4 ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTY 63
ISV A+KR W+ L I+ V V+ + RL S FGVH+ + D+ FNPK V Y
Sbjct 4 ISVLNALKRTWIALVILAVVVIAAFSVNRLRSYFGVHDDRPLTSGVSDDIKPFNPKHVVY 63
Query 64 EVFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
EVFGP T A I YLD +A+ R+ V+LPW++ V TTLP+VSVN++AQ + D I CRII
Sbjct 64 EVFGPPGTVANINYLDIEAQPQRVSGVTLPWTLAVTTTLPSVSVNVVAQGDTDQIGCRII 123
Query 123 VNGAVKDERSETSPRALTSCQVSSG 147
VNG VKDERSE A T C V S
Sbjct 124 VNGEVKDERSENEVNAQTFCLVKSA 148
>gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_11007 [Mycobacterium kansasii ATCC
12478]
Length=148
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/144 (53%), Positives = 95/144 (66%), Gaps = 1/144 (0%)
Query 4 ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTY 63
ISV+ A+KR+W+ L IV V V G +YRL FG ++ + D+ FNPK V Y
Sbjct 4 ISVASALKRVWIPLVIVAVVAVAGFSVYRLRGFFGYTDKGPITSGIADDIKPFNPKHVVY 63
Query 64 EVFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
EVFGP T A I YLD +A+ R+ +V LPW+++V TTLP+VSVN++AQ N+D I CRII
Sbjct 64 EVFGPPGTIANINYLDINAQPQRVSNVPLPWTLSVTTTLPSVSVNVVAQGNSDQIGCRII 123
Query 123 VNGAVKDERSETSPRALTSCQVSS 146
VNG VKDERSE A T C V S
Sbjct 124 VNGEVKDERSENQVNAQTFCLVKS 147
>gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bovis AF2122/97]
gi|121637477|ref|YP_977700.1| putative membrane protein mmpS6 [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989952|ref|YP_002644639.1| hypothetical protein JTY_1583 [Mycobacterium bovis BCG str. Tokyo
172]
17 more sequence titles
Length=148
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/143 (49%), Positives = 89/143 (63%), Gaps = 1/143 (0%)
Query 1 VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR 60
++ ISV+G VKR W++L V V V G +YRLH IFG H+ + D+ FNPK+
Sbjct 1 MQGISVTGLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQ 60
Query 61 VTYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC 119
VT EVFG P A I YLD DA ++ +LPWS T+ TTLPAV N++AQ +++ I C
Sbjct 61 VTLEVFGAPGTVATINYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGC 120
Query 120 RIIVNGAVKDERSETSPRALTSC 142
RI VNG VKDER RA T C
Sbjct 121 RITVNGVVKDERIVNEVRAYTFC 143
>gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 [Mycobacterium africanum GM041182]
gi|339330983|emb|CCC26655.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=148
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/143 (49%), Positives = 89/143 (63%), Gaps = 1/143 (0%)
Query 1 VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR 60
++ ISV+G VKR W++L V V V G +YRLH IFG H+ + D+ FNPK+
Sbjct 1 MQGISVTGLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQ 60
Query 61 VTYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC 119
VT EVFG P A + YLD DA ++ +LPWS T+ TTLPAV N++AQ +++ I C
Sbjct 61 VTLEVFGAPGTVATVNYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGC 120
Query 120 RIIVNGAVKDERSETSPRALTSC 142
RI VNG VKDER RA T C
Sbjct 121 RITVNGVVKDERIVNEVRAYTFC 143
>gi|183983723|ref|YP_001852014.1| membrane protein MmpS5_1 [Mycobacterium marinum M]
gi|183177049|gb|ACC42159.1| conserved membrane protein MmpS5_1 [Mycobacterium marinum M]
Length=147
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/144 (45%), Positives = 85/144 (60%), Gaps = 2/144 (1%)
Query 4 ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTY 63
I V+ +KR W+ L +VVV + GL + RLH IFG E D+ FNPK V Y
Sbjct 4 IPVTSVLKRAWIPLLMVVVLAISGLVVSRLHKIFG-SEDLNANAGAGIDIVQFNPKVVIY 62
Query 64 EVFGPA-KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
E+ GPA TA I + D DA H++++ LPWS T+ TTLP+VS N+MAQ + I CRI
Sbjct 63 EISGPAGSTANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRIT 122
Query 123 VNGAVKDERSETSPRALTSCQVSS 146
V+G V++E+S T C V S
Sbjct 123 VDGVVREEKSAAGVNPQTFCLVKS 146
>gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
gi|118172001|gb|ABK72897.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=158
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/146 (42%), Positives = 85/146 (59%), Gaps = 1/146 (0%)
Query 2 RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRV 61
+ S+S +R W+ L I V VG + R+ + FG + P++ D F+PK V
Sbjct 12 KKFSISALARRFWIPLLIGAVVFVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVV 71
Query 62 TYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR 120
YE++G P TA I YLD DA+ R+D +LPWS+T+ TT P+V N++AQ N D I+CR
Sbjct 72 VYEIYGEPGATADINYLDLDAQPQRVDGATLPWSLTLSTTAPSVFPNIVAQGNGDTITCR 131
Query 121 IIVNGAVKDERSETSPRALTSCQVSS 146
I V+ +KDER+ A T C V S
Sbjct 132 ITVDDELKDERTSNGVNAQTFCLVKS 157
>gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
gi|118172400|gb|ABK73296.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=142
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/138 (44%), Positives = 85/138 (62%), Gaps = 1/138 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-P 68
+KR W+ L I VV +VG + R+ + FG + P++ D F+PK V YE++G P
Sbjct 4 LKRFWIPLLIGVVVLVGAFTVMRVRTFFGSGDDPSLASAKVDDTKPFDPKVVIYEIYGEP 63
Query 69 AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
TA + YLD DA+ R+D VSLPW++T+ TT P+V N++AQ N D I+CRI V+ +K
Sbjct 64 GATADVNYLDLDAQPQRVDGVSLPWTLTLSTTAPSVFPNIVAQGNGDSITCRITVDDELK 123
Query 129 DERSETSPRALTSCQVSS 146
DER+ A T C V S
Sbjct 124 DERTSNGVNAQTFCLVKS 141
>gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycobacterium kansasii ATCC 12478]
Length=139
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/137 (45%), Positives = 81/137 (60%), Gaps = 2/137 (1%)
Query 11 KRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGP-A 69
+ +W+ L +V+V V GL + RLH IFG + ++ FNPK VTYEVFGP
Sbjct 3 RHLWIPLVLVIVLAVSGLVVMRLHRIFGSQDL-NANAGGGIEIVQFNPKVVTYEVFGPPG 61
Query 70 KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD 129
TA I Y D DA H++++ LPWSVT+ TTLP+VS N+MAQ + I CRI V+G V+
Sbjct 62 STANINYWDADANTHQVNAAPLPWSVTISTTLPSVSANIMAQGDGSRIGCRITVDGVVRQ 121
Query 130 ERSETSPRALTSCQVSS 146
E+ T C V S
Sbjct 122 EKKSDGVNPQTFCLVKS 138
>gi|41409848|ref|NP_962684.1| MmpS1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41398680|gb|AAS06300.1| MmpS1 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=154
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/148 (48%), Positives = 96/148 (65%), Gaps = 1/148 (0%)
Query 1 VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR 60
V I V+ VK++W++L IV V V GL + RL + F + + D+ FNPKR
Sbjct 7 VARIPVAKMVKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKR 66
Query 61 VTYEVFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC 119
V YEV+GP KT A I YLD +A+ ++ +V+LPW+++V TTLP++SVN++AQ++ D I C
Sbjct 67 VVYEVYGPPKTVADINYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQADTDQIGC 126
Query 120 RIIVNGAVKDERSETSPRALTSCQVSSG 147
RIIVN VKDERS RA T C V S
Sbjct 127 RIIVNEVVKDERSADGVRAQTFCIVKSA 154
>gi|336460143|gb|EGO39048.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=140
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/139 (49%), Positives = 92/139 (67%), Gaps = 1/139 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
VK++W++L IV V V GL + RL + F + + D+ FNPKRV YEV+GP
Sbjct 2 VKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKRVVYEVYGPP 61
Query 70 KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
KT A I YLD +A+ ++ +V+LPW+++V TTLP+VSVN++AQ++ D I CRIIVN VK
Sbjct 62 KTVADINYLDINAQPQKVANVALPWTLSVITTLPSVSVNVVAQADTDQIGCRIIVNDVVK 121
Query 129 DERSETSPRALTSCQVSSG 147
DERS RA T C V S
Sbjct 122 DERSADGVRAQTFCIVKSA 140
>gi|118618954|ref|YP_907286.1| membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99]
gi|118571064|gb|ABL05815.1| conserved membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99]
Length=139
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/138 (45%), Positives = 81/138 (59%), Gaps = 2/138 (1%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
+KR W+ L +VVV + G + RLH IFG E D+ FNPK V YE+ GPA
Sbjct 2 LKRAWIPLLMVVVLAISGFVVSRLHKIFG-SEDLNANAGAGIDIVQFNPKVVIYEISGPA 60
Query 70 -KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
TA I + D DA H++++ LPWS T+ TTLP+VS N+MAQ + I CRI V+G V+
Sbjct 61 GSTANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRITVDGVVR 120
Query 129 DERSETSPRALTSCQVSS 146
+E+S T C V S
Sbjct 121 EEKSAAGVNPQTFCLVKS 138
>gi|118616542|ref|YP_904874.1| transmembrane proteinm, MmpS5 [Mycobacterium ulcerans Agy99]
gi|183981027|ref|YP_001849318.1| transmembrane proteinm, MmpS5 [Mycobacterium marinum M]
gi|118568652|gb|ABL03403.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium ulcerans
Agy99]
gi|183174353|gb|ACC39463.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium marinum
M]
Length=142
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/142 (44%), Positives = 85/142 (60%), Gaps = 6/142 (4%)
Query 8 GAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDF---DVPLFNPKRVTYE 64
G +KR W+ L I+VV + G + R+ + FG ++V P D ++PK V YE
Sbjct 3 GILKRAWIPLLILVVVAIAGFTVQRIRTFFGAD---GILVTPKVFANDPEPYDPKVVKYE 59
Query 65 VFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVN 124
+ G A I YLD DA+ R+D SLPWS+T++TT P+ + N++AQ N ISCRIIV+
Sbjct 60 ISGSGSYANINYLDLDAKPQRIDGASLPWSLTLQTTAPSAAPNILAQGNGSSISCRIIVD 119
Query 125 GAVKDERSETSPRALTSCQVSS 146
VKDER+ T ALT C V S
Sbjct 120 DVVKDERTATGVDALTYCFVKS 141
>gi|118472449|ref|YP_884986.1| MmpS1 protein [Mycobacterium smegmatis str. MC2 155]
gi|118173736|gb|ABK74632.1| MmpS1 protein [Mycobacterium smegmatis str. MC2 155]
Length=138
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/138 (46%), Positives = 85/138 (62%), Gaps = 3/138 (2%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGP- 68
+K+ W+ L + VV V GL ++RLH FG E ++ FNPK + YEV+GP
Sbjct 2 LKQAWIPLVLAVVLPVSGLVVWRLHEKFG-SEDLNANAGAGIEIVQFNPKILVYEVYGPP 60
Query 69 AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
TA+I+Y D DA VH +++ +LPWSVT+ TTLP VS NLMA + D I CR+ VNG V+
Sbjct 61 GSTAQISYFDTDANVHSVNT-TLPWSVTLSTTLPTVSANLMALGSNDEIGCRVTVNGIVR 119
Query 129 DERSETSPRALTSCQVSS 146
+E+S A T C V S
Sbjct 120 EEKSANGIDAQTYCLVKS 137
>gi|296164372|ref|ZP_06846949.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900275|gb|EFG79704.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=139
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/138 (47%), Positives = 91/138 (66%), Gaps = 1/138 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
+K+MW++L IV V V G + RL + FGVH+ T+ ++ FNPKRV Y+V+GP
Sbjct 1 MKKMWIVLVIVAVVAVAGFCVLRLRTFFGVHDDQTMTSGIADEIKPFNPKRVVYQVYGPP 60
Query 70 KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
T A I YLD +A+ + +V LPW+++V +TLP+VSVN++AQ +++ I CRIIV+ VK
Sbjct 61 GTVANINYLDINAQPQKASNVPLPWTLSVTSTLPSVSVNIVAQGDSNQIGCRIIVDEVVK 120
Query 129 DERSETSPRALTSCQVSS 146
DERS A T C V S
Sbjct 121 DERSSQGMNAQTFCIVKS 138
>gi|118617881|ref|YP_906213.1| membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
gi|118569991|gb|ABL04742.1| conserved membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
Length=156
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/135 (43%), Positives = 78/135 (58%), Gaps = 2/135 (1%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVM-VKPDFDVPLFNPKRVTYEVFG- 67
+KR WL L + VV VGG + R+ +FG + PT P V PKRV YE+FG
Sbjct 17 LKRAWLPLVLAVVFAVGGFAVSRVRGMFGSQQLPTYADSTPAGSVSSSGPKRVRYEIFGA 76
Query 68 PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAV 127
P A I Y+DP +L+ V+LPWS+ VET P++ N++AQ+N D + CRI G V
Sbjct 77 PGTIADINYMDPAGEAQQLNDVALPWSIEVETDAPSMVANIIAQANTDFLGCRISSGGEV 136
Query 128 KDERSETSPRALTSC 142
KDER+ ++ A C
Sbjct 137 KDERTSSAVSAYVYC 151
>gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976 [Mycobacterium intracellulare
ATCC 13950]
Length=134
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/134 (45%), Positives = 79/134 (59%), Gaps = 1/134 (0%)
Query 15 LLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAK 73
+++ V+V + G GIYRLH IFG H+ T ++ FNPK+V EVFG P A
Sbjct 1 MVIVSVLVVALAGFGIYRLHGIFGSHDNTTANSGLAAEIVPFNPKQVVLEVFGAPGAVAT 60
Query 74 IAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSE 133
I YLD +A+ ++ LPWS T+ TT PAV N++AQ N D + CRI VNG VKD+R+
Sbjct 61 INYLDVNAQPQQVKDAPLPWSFTITTTEPAVIGNVVAQGNGDTLGCRITVNGEVKDQRTV 120
Query 134 TSPRALTSCQVSSG 147
A T C SG
Sbjct 121 HKVDAYTFCLDKSG 134
>gi|15607817|ref|NP_215191.1| hypothetical protein Rv0677c [Mycobacterium tuberculosis H37Rv]
gi|15840080|ref|NP_335117.1| MmpS family membrane protein [Mycobacterium tuberculosis CDC1551]
gi|31791861|ref|NP_854354.1| hypothetical protein Mb0696c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=142
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/142 (43%), Positives = 84/142 (60%), Gaps = 6/142 (4%)
Query 8 GAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDF---DVPLFNPKRVTYE 64
G +KR W+ L I+VV + G + R+ + FG ++V P D F+PK V YE
Sbjct 3 GTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSE---GILVTPKVFADDPEPFDPKVVEYE 59
Query 65 VFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVN 124
V G I YLD DA+ R+D +LPWS+T++TT P+ + N++AQ + I+CRI V+
Sbjct 60 VSGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVD 119
Query 125 GAVKDERSETSPRALTSCQVSS 146
G VKDER+ T ALT C V S
Sbjct 120 GEVKDERTATGVDALTYCFVKS 141
>gi|240172456|ref|ZP_04751115.1| membrane transporter [Mycobacterium kansasii ATCC 12478]
Length=143
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/138 (44%), Positives = 83/138 (61%), Gaps = 1/138 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
+KR W+ L +V+ V GG+ + RL +FG T + N KRVTYEVFGPA
Sbjct 5 LKRGWIPLVVVIALVAGGIAVDRLRGVFGSDPIFTWTGANSGVIESINTKRVTYEVFGPA 64
Query 70 KTA-KIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
TA ++YL+ + + + SLPW+ T+ TT+PAV N++AQ N+D I CRI VNGAVK
Sbjct 65 GTAGSVSYLNKETQPEQASFTSLPWTYTMTTTIPAVIANVVAQGNSDSIGCRITVNGAVK 124
Query 129 DERSETSPRALTSCQVSS 146
DE+S + A C V +
Sbjct 125 DEQSSSGHHAQAFCLVKA 142
>gi|183981710|ref|YP_001850001.1| hypothetical protein MMAR_1696 [Mycobacterium marinum M]
gi|183175036|gb|ACC40146.1| conserved membrane protein [Mycobacterium marinum M]
Length=143
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/139 (46%), Positives = 81/139 (59%), Gaps = 1/139 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-P 68
V+R W+++ V V V+ G IYRLH IFG H + ++ FNPK+V +VFG P
Sbjct 5 VRRGWMMIVAVAVVVIAGFAIYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDVFGAP 64
Query 69 AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
A I YLD +A+ ++ LPWS T+ TT PAV N++AQ N I CRI VNG VK
Sbjct 65 GAVATINYLDVNAQPQQVVDAPLPWSFTITTTEPAVLGNVVAQGNGGTIGCRITVNGEVK 124
Query 129 DERSETSPRALTSCQVSSG 147
DER +P A T C SG
Sbjct 125 DERIVNTPDAYTFCLDKSG 143
>gi|342858162|ref|ZP_08714817.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT
3035]
gi|342133866|gb|EGT87046.1| hypothetical protein MCOL_04791 [Mycobacterium colombiense CECT
3035]
Length=148
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/148 (42%), Positives = 87/148 (59%), Gaps = 1/148 (0%)
Query 1 VRMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKR 60
++ S++ +KR W+++ V+V + G GIYRLH I H + ++ FNPK+
Sbjct 1 MKSFSIAPLLKRGWMVVVAVLVVALAGFGIYRLHGILWSHTSTSANSGLSNEIVPFNPKQ 60
Query 61 VTYEVFG-PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISC 119
V EVFG P TA I YLD +A+ ++ SLPWS T+ TT PAV N++AQ + D + C
Sbjct 61 VVLEVFGAPGATATINYLDVNAQPQQVKDASLPWSFTITTTEPAVIGNVVAQGDGDTLGC 120
Query 120 RIIVNGAVKDERSETSPRALTSCQVSSG 147
RI VNG VKD+R+ A T C SG
Sbjct 121 RITVNGEVKDQRTVNKVDAYTFCLDKSG 148
>gi|333989815|ref|YP_004522429.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
gi|333485783|gb|AEF35175.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
Length=141
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/139 (43%), Positives = 85/139 (62%), Gaps = 3/139 (2%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVTYEVFGP 68
+ R+WL + IV G + + +L ++FG H P V+ D FNPK VTYEVFG
Sbjct 5 ISRVWLPVVIVAAVTAGAVTVAQLRTVFGSH--PVVITDISSDNAEDFNPKFVTYEVFGS 62
Query 69 AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
TA I Y+D + + R+ S +LPW++T++TTLP+V N++AQS+ D ISCR+ V+ VK
Sbjct 63 GTTAVINYMDLEGKPQRIPSAALPWTLTLQTTLPSVMPNILAQSDGDSISCRVTVDDEVK 122
Query 129 DERSETSPRALTSCQVSSG 147
ER+ T A T C V +
Sbjct 123 QERTATGVNAETFCFVKAA 141
>gi|254819607|ref|ZP_05224608.1| MmpS4 protein [Mycobacterium intracellulare ATCC 13950]
Length=132
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/127 (42%), Positives = 75/127 (60%), Gaps = 1/127 (0%)
Query 17 LAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPAKT-AKIA 75
+ IV V + GG+ + RLH +FG +P+ D FNPK V YEVFGPA T A I+
Sbjct 1 MVIVAVVIAGGMTVSRLHGVFGSEHRPSYAESRQQDTKPFNPKHVKYEVFGPAGTMADIS 60
Query 76 YLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSETS 135
Y D + + + + LPW+ + TTLP++ N++AQ N+D + CRI+V+G VK ER
Sbjct 61 YFDANGEPNHITGIVLPWTFDISTTLPSIVGNVVAQGNSDTLGCRIVVDGVVKTERISHQ 120
Query 136 PRALTSC 142
A T C
Sbjct 121 LNAFTYC 127
>gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_4018 [Mycobacterium sp. JDM601]
gi|333488626|gb|AEF38018.1| membrane protein MmpS4_2 [Mycobacterium sp. JDM601]
Length=148
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/134 (42%), Positives = 81/134 (61%), Gaps = 1/134 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
+ R+W+ L I+ V V G + R+H +FG ++P+ + FNPKR+TYE+FGP
Sbjct 10 LSRVWIPLVILAVVGVAGFTVTRIHGLFGSEKRPSYADGQIDETKPFNPKRMTYEIFGPP 69
Query 70 KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
T A I+Y D ++ R+ V+LPW + + TTLPAV ++MAQ N++ I CRI V+G VK
Sbjct 70 GTVADISYFDVNSEPQRVQDVALPWQLEIVTTLPAVVGSIMAQGNSNSIGCRITVDGEVK 129
Query 129 DERSETSPRALTSC 142
ER A T C
Sbjct 130 AERISNEVNAYTFC 143
>gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
gi|82393549|gb|ABB72060.1| MmpS4 [Mycobacterium smegmatis str. MC2 155]
gi|118175211|gb|ABK76107.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
Length=139
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/134 (41%), Positives = 80/134 (60%), Gaps = 1/134 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
++R+W+ L ++ V VGG + RLH++FG ++P+ D F+PKR+TYEVFGP
Sbjct 1 MRRLWIPLLVIAVVAVGGFTVSRLHNVFGAEKRPSYADTKAADSKPFDPKRLTYEVFGPP 60
Query 70 KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
T A I+Y D D+ ++ VSLPWS+ + ++MAQ ++D I CRIIV+ VK
Sbjct 61 GTLADISYFDEDSNPQFVEKVSLPWSLHFDIGKTTAVGSIMAQGDSDTIGCRIIVDDEVK 120
Query 129 DERSETSPRALTSC 142
E+ A TSC
Sbjct 121 AEKVSNQTNAFTSC 134
>gi|183981736|ref|YP_001850027.1| membrane protein MmpS1 [Mycobacterium marinum M]
gi|183175062|gb|ACC40172.1| conserved membrane protein MmpS1 [Mycobacterium marinum M]
Length=142
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/138 (44%), Positives = 84/138 (61%), Gaps = 2/138 (1%)
Query 11 KRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPAK 70
+RMW+ + +++VA+VG + RLH +FG H D V FNPK V YEVFGP
Sbjct 6 RRMWVPIVMILVAIVGASVVMRLHGVFGSHRYVPDAGNSDAIVA-FNPKYVRYEVFGPPG 64
Query 71 TA-KIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKD 129
T + YLD A H + + ++PWS+T+ TTL +V +L+AQ N+ +SCRI VNG V+
Sbjct 65 TVVTVNYLDAQAEPHEVANAAIPWSLTIVTTLTSVVAHLVAQGNSATLSCRITVNGVVRA 124
Query 130 ERSETSPRALTSCQVSSG 147
ER+ + A TSC V S
Sbjct 125 ERTADAHDAATSCLVKSA 142
>gi|5524339|gb|AAD44232.1|AF143772_38 TmtpA [Mycobacterium avium]
Length=221
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/136 (45%), Positives = 82/136 (61%), Gaps = 1/136 (0%)
Query 8 GAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG 67
G +KR+W+ L IV V V GGL + RLH IFG ++P+ D FNPK V YEVFG
Sbjct 81 GFLKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQDTKPFNPKHVKYEVFG 140
Query 68 PAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGA 126
PA A I+Y D + ++ V LPW+ + TTLP++ N++AQ N+D + CRI+V+G
Sbjct 141 PAGAMADISYFDANGEPQHINGVELPWTFDISTTLPSIVGNVVAQGNSDSLGCRILVDGV 200
Query 127 VKDERSETSPRALTSC 142
VK ER A T C
Sbjct 201 VKTERISHELNAFTYC 216
>gi|240171020|ref|ZP_04749679.1| hypothetical protein MkanA1_17040 [Mycobacterium kansasii ATCC
12478]
Length=134
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/129 (47%), Positives = 78/129 (61%), Gaps = 1/129 (0%)
Query 15 LLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAK 73
+LL VVV G G+YRLH IFG + + ++ FNPK+VT EVFG P A
Sbjct 1 MLLVAVVVVAAAGFGVYRLHGIFGSQDDTSAAGGISNEIIPFNPKQVTLEVFGAPGTVAT 60
Query 74 IAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSE 133
I YLD +A+ ++ +LPWS T+ TT PAV N++AQ N++ I CRI VNG VKDER+
Sbjct 61 INYLDVNAQPQQVLDTTLPWSYTITTTQPAVFANVVAQGNSNSIGCRITVNGVVKDERTV 120
Query 134 TSPRALTSC 142
A T C
Sbjct 121 NKVNAYTFC 129
>gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
gi|169242198|emb|CAM63226.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=143
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/138 (40%), Positives = 78/138 (57%), Gaps = 1/138 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-P 68
++++W+ L I V +GG ++R+ IFG D +NPK + YE+FG P
Sbjct 5 IRKIWMPLLIAAVVAIGGFAVFRVRGIFGSESFGASADNNAKDAVPYNPKTLVYEIFGEP 64
Query 69 AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
A + Y + DA+ R+D+V LPW+ + +TLP++S N++AQ N D I CRI VNG VK
Sbjct 65 GAMADVNYFNEDAQPTRVDNVQLPWAFKIVSTLPSLSGNIVAQGNGDQIGCRITVNGEVK 124
Query 129 DERSETSPRALTSCQVSS 146
ER T A C V S
Sbjct 125 MERVSTEHNAYIYCLVKS 142
>gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_22360 [Mycobacterium kansasii ATCC
12478]
Length=149
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/146 (40%), Positives = 83/146 (57%), Gaps = 1/146 (0%)
Query 2 RMISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRV 61
+M ++ A+KR+W+ L + + G +YRLH IFG + ++ FNPK+V
Sbjct 3 QMTAILSALKRLWIPLVVSLTVATSGFTVYRLHGIFGAAGFSAISNGHADEIVPFNPKQV 62
Query 62 TYEVFGP-AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCR 120
YEV GP T I+YLD +A + LPW+ T TT+PAV NL+AQ +++ I CR
Sbjct 63 RYEVVGPPGTTGSISYLDENAAPQQARFTMLPWTHTFTTTIPAVFANLVAQGDSNAIGCR 122
Query 121 IIVNGAVKDERSETSPRALTSCQVSS 146
I VNG +K+++ T A T C V S
Sbjct 123 ISVNGEIKEQQYATEVNAQTFCLVKS 148
>gi|41407339|ref|NP_960175.1| MmpS4 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118464605|ref|YP_882429.1| MmpS4 protein [Mycobacterium avium 104]
gi|254775696|ref|ZP_05217212.1| MmpS4 protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|41395691|gb|AAS03558.1| MmpS4 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165892|gb|ABK66789.1| MmpS4 protein [Mycobacterium avium 104]
gi|336457975|gb|EGO36963.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=139
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/134 (45%), Positives = 81/134 (61%), Gaps = 1/134 (0%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPA 69
+KR+W+ L IV V V GGL + RLH IFG ++P+ D FNPK V YEVFGPA
Sbjct 1 MKRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQDTKPFNPKHVKYEVFGPA 60
Query 70 KT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
A I+Y D + ++ V LPW+ + TTLP++ N++AQ N+D + CRI+V+G VK
Sbjct 61 GAMADISYFDANGEPQHINGVELPWTFDISTTLPSIVGNVVAQGNSDSLGCRILVDGVVK 120
Query 129 DERSETSPRALTSC 142
ER A T C
Sbjct 121 TERISHELNAFTYC 134
>gi|296165068|ref|ZP_06847621.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899561|gb|EFG79014.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=144
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/144 (43%), Positives = 80/144 (56%), Gaps = 2/144 (1%)
Query 4 ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVT 62
+ VS V+ WL L IV V VVGG + R+ S FG H+ ++ P D F PK V
Sbjct 1 MQVSKVVRNAWLPLLIVAVLVVGGFAVARVKSFFGAHDT-GILTSPRLDDSKPFKPKVVK 59
Query 63 YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
YEVFG A +A + YLD A R+D LPW++ + TT P+V NL AQS+ + + CRI
Sbjct 60 YEVFGSASSANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRIT 119
Query 123 VNGAVKDERSETSPRALTSCQVSS 146
++ VK E ALT C V S
Sbjct 120 IDDEVKAENMTHGVHALTFCMVKS 143
>gi|118617551|ref|YP_905883.1| membrane protein MmpS1 [Mycobacterium ulcerans Agy99]
gi|118569661|gb|ABL04412.1| conserved membrane protein MmpS1 [Mycobacterium ulcerans Agy99]
Length=135
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/136 (45%), Positives = 82/136 (61%), Gaps = 2/136 (1%)
Query 13 MWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFGPAKTA 72
MW+ + +V+VA+VG + RLH +FG H D V FNPK V YEVFGP T
Sbjct 1 MWVPIVMVLVAIVGASVVMRLHGVFGSHRYVPDAGNSDAIV-AFNPKYVRYEVFGPPGTV 59
Query 73 -KIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDER 131
+ YLD A H + + ++PWS+T+ TTL +V +L+AQ N+ +SCRI VNG V+ ER
Sbjct 60 VTVNYLDAQAEPHEVANAAIPWSLTIVTTLTSVVAHLVAQGNSATLSCRITVNGVVRAER 119
Query 132 SETSPRALTSCQVSSG 147
+ + A TSC V S
Sbjct 120 TADAHDAATSCPVKSA 135
>gi|254820611|ref|ZP_05225612.1| MmpS5 protein [Mycobacterium intracellulare ATCC 13950]
Length=138
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/138 (44%), Positives = 77/138 (56%), Gaps = 2/138 (1%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPL-FNPKRVTYEVFGP 68
++ WL L IV V +VGG + R+ S FG H+ VM P D F PK V YEVFG
Sbjct 1 MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDT-GVMTSPRLDESKPFKPKVVKYEVFGS 59
Query 69 AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
A A + YLD A R+D LPW++ + TT P+V NL AQS+ + + CRI ++ VK
Sbjct 60 AAQANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRITIDDEVK 119
Query 129 DERSETSPRALTSCQVSS 146
DE ALT C V S
Sbjct 120 DENLTHGVHALTFCMVKS 137
>gi|118462696|ref|YP_881703.1| MmpS5 protein [Mycobacterium avium 104]
gi|118163983|gb|ABK64880.1| MmpS5 protein [Mycobacterium avium 104]
Length=144
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/145 (42%), Positives = 80/145 (56%), Gaps = 2/145 (1%)
Query 4 ISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVT 62
+ +S V+ WL L IV V +VGG + R+ S FG H+ ++ P D F PK V
Sbjct 1 MQISRLVRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDT-GILTSPRLDDSKPFKPKVVK 59
Query 63 YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
YEVFG A A + YLD A R+D LPW++ + TT P+V NL AQS+ + + CRI
Sbjct 60 YEVFGSASQANVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRIT 119
Query 123 VNGAVKDERSETSPRALTSCQVSSG 147
++ VKDE ALT C V S
Sbjct 120 IDDEVKDENITHGVHALTFCLVKSA 144
>gi|118464951|ref|YP_880981.1| Mmps1 protein [Mycobacterium avium 104]
gi|254774572|ref|ZP_05216088.1| Mmps1 protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|118166238|gb|ABK67135.1| Mmps1 protein [Mycobacterium avium 104]
Length=130
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/129 (45%), Positives = 76/129 (59%), Gaps = 2/129 (1%)
Query 19 IVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAKIAYL 77
+VVV V L + RLH IFG E ++ FNPK V YE+ G P TA I Y
Sbjct 2 LVVVLAVSALIVSRLHKIFG-SEDLNANAGKGIEIVQFNPKVVVYEISGAPGSTANINYW 60
Query 78 DPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSETSPR 137
D +A H++++ LPWS T+ TTLP+VS N+MAQS+ ISC+I V+G V+D ++
Sbjct 61 DENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDNQNSDGHN 120
Query 138 ALTSCQVSS 146
A T C V S
Sbjct 121 AQTFCLVKS 129
>gi|342858823|ref|ZP_08715478.1| MmpS4 protein [Mycobacterium colombiense CECT 3035]
gi|342134527|gb|EGT87707.1| MmpS4 protein [Mycobacterium colombiense CECT 3035]
Length=159
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/139 (42%), Positives = 83/139 (60%), Gaps = 1/139 (0%)
Query 5 SVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYE 64
+ G + R+W+ L IV V V GG+ + RLH +FG ++P+ D FNPK V YE
Sbjct 16 GIFGFLGRLWIPLVIVAVVVAGGMTVSRLHGVFGSEKRPSYAESRQQDTKPFNPKHVKYE 75
Query 65 VFGPAKT-AKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIV 123
VFGPA + A I+Y D + + + + LPW+ + TTLP++ N++AQ N+D + CRI+V
Sbjct 76 VFGPAGSMADISYFDANGEPNHITGIELPWTFDISTTLPSIVGNVVAQGNSDSLGCRIVV 135
Query 124 NGAVKDERSETSPRALTSC 142
+G VK ER A T C
Sbjct 136 DGVVKAERISHELNAFTYC 154
>gi|333992781|ref|YP_004525395.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
gi|333488749|gb|AEF38141.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
Length=141
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/139 (49%), Positives = 87/139 (63%), Gaps = 2/139 (1%)
Query 9 AVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG- 67
A+KR WL L IVVV V+G L + RL + FG + + K D D +NPK VTYEVFG
Sbjct 3 ALKRGWLPLLIVVVLVLGTLTVLRLRTFFGGEDSSLISTKVD-DTKPYNPKVVTYEVFGE 61
Query 68 PAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAV 127
P TA I+YLD D+R R+D LPW+VT+ TTL AVS NL AQ + CRI ++ +
Sbjct 62 PGATADISYLDLDSRPQRVDDAVLPWAVTLSTTLSAVSPNLYAQGKGSTLGCRISIDDEL 121
Query 128 KDERSETSPRALTSCQVSS 146
KDER+ T A+T C V +
Sbjct 122 KDERTATGASAMTFCLVKA 140
>gi|145223615|ref|YP_001134293.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
gi|145216101|gb|ABP45505.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
Length=141
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/144 (44%), Positives = 82/144 (57%), Gaps = 4/144 (2%)
Query 3 MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT 62
MI+V VKR+WL + IVV +G + I L S+FG + V D FNP VT
Sbjct 1 MITV---VKRVWLPVLIVVALAIGFVSISYLRSVFGSNGAVVTPVGSD-TAEDFNPTVVT 56
Query 63 YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
YEVFG A I Y D D R VSLPW++T+ETT+P+V +L+AQ N I CR+
Sbjct 57 YEVFGTGSFAVINYTDLDGLPQRTGQVSLPWTLTLETTIPSVRPDLLAQGNGQFIGCRVT 116
Query 123 VNGAVKDERSETSPRALTSCQVSS 146
V+G V+DER+ A T C V +
Sbjct 117 VDGEVEDERTAEGVNAATYCLVKA 140
>gi|315442510|ref|YP_004075389.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
gi|315260813|gb|ADT97554.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
Length=141
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/144 (44%), Positives = 83/144 (58%), Gaps = 4/144 (2%)
Query 3 MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVT 62
MISV VKR+WL + ++ VG + L S+FG + V D FNPK VT
Sbjct 1 MISV---VKRIWLPVLVIAAVAVGAGAVANLRSVFGSDKAIVTPVDAD-TAENFNPKVVT 56
Query 63 YEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRII 122
YEVFG +A I Y D D + R V LPWS+T+ETTLP+V N+MAQ + ++CR+
Sbjct 57 YEVFGSGTSATINYADLDGKPQRTGEVGLPWSLTLETTLPSVMPNIMAQGDGHSLTCRVT 116
Query 123 VNGAVKDERSETSPRALTSCQVSS 146
V+G VKDER+ A T C V +
Sbjct 117 VDGEVKDERTAEGMNAATYCLVKA 140
>gi|118617529|ref|YP_905861.1| hypothetical protein MUL_1935 [Mycobacterium ulcerans Agy99]
gi|118569639|gb|ABL04390.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=134
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/122 (47%), Positives = 70/122 (58%), Gaps = 1/122 (0%)
Query 27 GLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNPKRVTYEVFG-PAKTAKIAYLDPDARVHR 85
G IYRLH IFG H + ++ FNPK+V +VFG P A I YLD +A+ +
Sbjct 13 GFAIYRLHGIFGSHNNASGANGISNEIVPFNPKQVVLDVFGAPGAVATINYLDVNAQPQQ 72
Query 86 LDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDERSETSPRALTSCQVS 145
+ LPWS T+ TT PAV N++AQ N I CRI VNG VKDER +P A T C
Sbjct 73 VVDAPLPWSFTITTTEPAVLGNMVAQGNGGTIGCRITVNGEVKDERIVNTPDAYTFCLDK 132
Query 146 SG 147
SG
Sbjct 133 SG 134
>gi|120404167|ref|YP_953996.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
gi|119956985|gb|ABM13990.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
Length=142
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/149 (41%), Positives = 87/149 (59%), Gaps = 11/149 (7%)
Query 3 MISVSGAVKRMWLLLAIVVVAVVGGLGIYRLHSIFGVH---EQPTVMVKPDFDVPL-FNP 58
MI+++ K++WL L IVVV + GL + R+ + FG E P D+P F+P
Sbjct 1 MIAIA---KKVWLPLLIVVVVAIAGLTVARIRTFFGAEGIIETPRNFA----DLPEPFDP 53
Query 59 KRVTYEVFGPAKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVIS 118
K V YE+ G A + YLD DA+ R+D +LPWS+T+ETT P+ + N++AQ + I+
Sbjct 54 KVVRYEITGSGSYADVNYLDLDAKPQRVDGAALPWSLTLETTEPSAAPNIVAQGDGSTIT 113
Query 119 CRIIVNGAVKDERSETSPRALTSCQVSSG 147
CRI V+ +KDER+ A T C V S
Sbjct 114 CRIFVDDELKDERTTDGLNAQTFCFVKSA 142
>gi|296167298|ref|ZP_06849700.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897242|gb|EFG76846.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=143
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/141 (43%), Positives = 84/141 (60%), Gaps = 5/141 (3%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFDVPLFNP--KRVTYEVFG 67
+KR W+ L +V +GG+ I RL +FG P PL KRVTYEV+G
Sbjct 5 LKRAWVPLVVVAAVALGGIAIDRLRGVFG--SDPIFTATGSSAEPLVASHIKRVTYEVYG 62
Query 68 PA-KTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGA 126
P+ T ++YL+ +A+ + D +LPW+ T+ TT+PAV +++AQ ++D I CRI VNG
Sbjct 63 PSGTTGSVSYLNKNAQPEQADFSTLPWTFTITTTVPAVIASVVAQGDSDDIGCRISVNGE 122
Query 127 VKDERSETSPRALTSCQVSSG 147
VKDERS A TSC V +G
Sbjct 123 VKDERSSAGRNAQTSCLVKAG 143
>gi|41407835|ref|NP_960671.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254775167|ref|ZP_05216683.1| MmpS5 protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|41396189|gb|AAS04054.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=138
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/138 (43%), Positives = 77/138 (56%), Gaps = 2/138 (1%)
Query 10 VKRMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVTYEVFGP 68
++ WL L IV V +VGG + R+ S FG H+ ++ P D F PK V YEVFG
Sbjct 1 MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDT-GILTSPRLDDSKPFKPKVVKYEVFGS 59
Query 69 AKTAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVK 128
A A + YLD A R+D LPW++ + TT P+V NL AQS+ + + CRI ++ VK
Sbjct 60 ASQANVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRITIDDEVK 119
Query 129 DERSETSPRALTSCQVSS 146
DE ALT C V S
Sbjct 120 DENITHGVHALTFCLVKS 137
>gi|118468420|ref|YP_885767.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
gi|118169707|gb|ABK70603.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=138
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/136 (42%), Positives = 83/136 (62%), Gaps = 3/136 (2%)
Query 12 RMWLLLAIVVVAVVGGLGIYRLHSIFGVHEQPTVMVKPDFD-VPLFNPKRVTYEVFGPAK 70
R+WL + IVV G L + + ++FG P V+ + D FNPK VTYE+FG
Sbjct 4 RIWLPVLIVVAVAAGALIVMNVRTVFG--SNPVVVTEKTSDNAEDFNPKVVTYEIFGSGS 61
Query 71 TAKIAYLDPDARVHRLDSVSLPWSVTVETTLPAVSVNLMAQSNADVISCRIIVNGAVKDE 130
+A I Y+D + R++S LPWS+T++TTLP+V ++MAQ + D I+CR+ V+ VK+E
Sbjct 62 SAVINYMDLEGMPQRVESTPLPWSLTLQTTLPSVMPHIMAQGDGDSITCRVTVDDVVKEE 121
Query 131 RSETSPRALTSCQVSS 146
R+ T A T C V +
Sbjct 122 RTATGMNAETFCYVKA 137
Lambda K H
0.321 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131150363096
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40