BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0527
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
gi|15839921|ref|NP_334958.1| cytochrome c biogenesis protein, pu... 487 7e-136
gi|342858964|ref|ZP_08715618.1| cytochrome C-type biogenesis pro... 439 2e-121
gi|254818923|ref|ZP_05223924.1| cytochrome C biogenesis protein ... 437 7e-121
gi|296168238|ref|ZP_06850211.1| cytochrome c biogenesis membrane... 436 2e-120
gi|183980894|ref|YP_001849185.1| cytochrome C-type biogenesis pr... 422 3e-116
gi|289756605|ref|ZP_06515983.1| cytochrome C-type biogenesis pro... 421 7e-116
gi|118616431|ref|YP_904763.1| cytochrome C-type biogenesis prote... 419 2e-115
gi|41410121|ref|NP_962957.1| CcsA [Mycobacterium avium subsp. pa... 411 6e-113
gi|240171275|ref|ZP_04749934.1| cytochrome C biogenesis protein ... 397 1e-108
gi|108797673|ref|YP_637870.1| cytochrome c biogenesis protein, t... 395 4e-108
gi|118471789|ref|YP_885374.1| cytochrome C biogenesis protein tr... 392 3e-107
gi|15828297|ref|NP_302560.1| cytochrome C-type biogenesis protei... 386 2e-105
gi|333989165|ref|YP_004521779.1| cytochrome C-type biogenesis pr... 380 1e-103
gi|145220657|ref|YP_001131335.1| cytochrome c biogenesis protein... 355 3e-96
gi|315442393|ref|YP_004075272.1| cytochrome C biogenesis protein... 354 6e-96
gi|120401882|ref|YP_951711.1| cytochrome c biogenesis transmembr... 352 4e-95
gi|315441671|ref|YP_004074548.1| cytochrome c biogenesis protein... 351 5e-95
gi|145225926|ref|YP_001136580.1| cytochrome c biogenesis protein... 339 3e-91
gi|120404656|ref|YP_954485.1| cytochrome c biogenesis transmembr... 338 6e-91
gi|169631054|ref|YP_001704703.1| putative cytochrome C biogenesi... 338 6e-91
gi|119855070|ref|YP_935675.1| cytochrome c biogenesis protein, t... 337 7e-91
gi|145225963|ref|YP_001136617.1| cytochrome c biogenesis protein... 337 1e-90
gi|145223412|ref|YP_001134090.1| cytochrome c biogenesis protein... 333 1e-89
gi|333918040|ref|YP_004491621.1| cytochrome c biogenesis membran... 327 1e-87
gi|254777055|ref|ZP_05218571.1| cytochrome C biogenesis protein ... 325 5e-87
gi|33867172|ref|NP_898730.1| putative c-typ cytochrome biogenesi... 322 5e-86
gi|77454700|ref|YP_345568.1| putative cytochrome c biogenesis pr... 320 2e-85
gi|312141073|ref|YP_004008409.1| cytochrome c assembly protein [... 318 4e-85
gi|229490574|ref|ZP_04384412.1| cytochrome c biogenesis membrane... 311 5e-83
gi|226305158|ref|YP_002765116.1| cytochrome c biogenesis protein... 311 6e-83
gi|40445320|ref|NP_954780.1| cytochrome c-type biosynthesis prot... 311 6e-83
gi|54027131|ref|YP_121373.1| putative cytochrome c biogenesis me... 310 1e-82
gi|262202541|ref|YP_003273749.1| cytochrome C biogenesis protein... 306 1e-81
gi|54027695|ref|YP_121936.1| hypothetical protein pnf1460 [Nocar... 306 2e-81
gi|226361122|ref|YP_002778900.1| cytochrome c biogenesis protein... 305 3e-81
gi|111019027|ref|YP_701999.1| cytochrome c biogenesis membrane p... 305 3e-81
gi|226349530|ref|YP_002776644.1| putative thiol-disulfide oxidor... 299 2e-79
gi|262201032|ref|YP_003272240.1| cytochrome C biogenesis protein... 290 1e-76
gi|262202583|ref|YP_003273791.1| cytochrome C biogenesis protein... 289 3e-76
gi|343925989|ref|ZP_08765504.1| cytochrome c biogenesis protein ... 273 1e-71
gi|227549767|ref|ZP_03979816.1| cytochrome c family biogenesis p... 273 2e-71
gi|326383035|ref|ZP_08204724.1| cytochrome c-type biosynthesis p... 271 8e-71
gi|226349454|ref|YP_002776568.1| putative thiol-disulfide oxidor... 269 3e-70
gi|256380697|ref|YP_003104357.1| cytochrome c biogenesis protein... 268 8e-70
gi|126437055|ref|YP_001072746.1| cytochrome c biogenesis protein... 267 1e-69
gi|237786455|ref|YP_002907160.1| cytochrome c-type biogenesis pr... 263 1e-68
gi|296138423|ref|YP_003645666.1| cytochrome C biogenesis protein... 260 1e-67
gi|68536986|ref|YP_251691.1| cytochrome c-type biogenesis protei... 260 2e-67
gi|145294559|ref|YP_001137380.1| hypothetical protein cgR_0510 [... 260 2e-67
gi|19551685|ref|NP_599687.1| cytochrome C biogenesis protein [Co... 259 4e-67
>gi|15839921|ref|NP_334958.1| cytochrome c biogenesis protein, putative [Mycobacterium tuberculosis
CDC1551]
gi|31791709|ref|NP_854202.1| cytochrome C-type biogenesis protein CcdA [Mycobacterium bovis
AF2122/97]
gi|57116750|ref|YP_177735.1| cytochrome C-type biogenesis protein CcdA [Mycobacterium tuberculosis
H37Rv]
76 more sequence titles
Length=259
Score = 487 bits (1253), Expect = 7e-136, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK
Sbjct 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF
Sbjct 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR
Sbjct 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW
Sbjct 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
Query 241 NDVVSWLRDAFVSDVRLPI 259
NDVVSWLRDAFVSDVRLPI
Sbjct 241 NDVVSWLRDAFVSDVRLPI 259
>gi|342858964|ref|ZP_08715618.1| cytochrome C-type biogenesis protein CcdA [Mycobacterium colombiense
CECT 3035]
gi|342133205|gb|EGT86408.1| cytochrome C-type biogenesis protein CcdA [Mycobacterium colombiense
CECT 3035]
Length=259
Score = 439 bits (1129), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 234/259 (91%), Positives = 241/259 (94%), Gaps = 0/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTGFT+IAA GPLLVA+GVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQ P G +
Sbjct 1 MTGFTQIAAAGPLLVALGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQPPEGAIA 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P ARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQR GGVL +VMGLVF
Sbjct 61 APPGARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRAGGVLTIVMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VG I ALQRQARF+PRQLT+VAGAPVLGAVFALGWTPCLGPTL GVITVASAT+GASVAR
Sbjct 121 VGLIPALQRQARFSPRQLTTVAGAPVLGAVFALGWTPCLGPTLAGVITVASATDGASVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLVIAYCLGLGIPFVLLAFGSA AV GLGWLRRHTRAIQIFGG LLIAVGA LVTGVW
Sbjct 181 GIVLVIAYCLGLGIPFVLLAFGSAGAVGGLGWLRRHTRAIQIFGGVLLIAVGALLVTGVW 240
Query 241 NDVVSWLRDAFVSDVRLPI 259
ND VSWLRDAFVSDVRLPI
Sbjct 241 NDFVSWLRDAFVSDVRLPI 259
>gi|254818923|ref|ZP_05223924.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium
intracellulare ATCC 13950]
Length=259
Score = 437 bits (1124), Expect = 7e-121, Method: Compositional matrix adjust.
Identities = 232/259 (90%), Positives = 240/259 (93%), Gaps = 0/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTGFT+IAA GPLLVA+G CLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQ P G VK
Sbjct 1 MTGFTQIAAAGPLLVALGACLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQPPPGAVK 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P ARWRVAGSAALFVAGFT VF+LGTVAVLGMTTTLITNQLLLQR GGVL +VMGLVF
Sbjct 61 APPGARWRVAGSAALFVAGFTAVFILGTVAVLGMTTTLITNQLLLQRAGGVLTIVMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VG I ALQRQARF+PRQLT+VAGAPVLGAVFALGWTPCLGPTL GVITVASAT+GASVAR
Sbjct 121 VGLIPALQRQARFSPRQLTTVAGAPVLGAVFALGWTPCLGPTLAGVITVASATDGASVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLVIAYCLGLGIPFVLLAFGSA AVAGLGWLRRHTRAIQ+FGG LLI VGA LVTGVW
Sbjct 181 GIVLVIAYCLGLGIPFVLLAFGSAGAVAGLGWLRRHTRAIQVFGGVLLITVGALLVTGVW 240
Query 241 NDVVSWLRDAFVSDVRLPI 259
ND VSWLRDAFVSDVRLPI
Sbjct 241 NDFVSWLRDAFVSDVRLPI 259
>gi|296168238|ref|ZP_06850211.1| cytochrome c biogenesis membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896810|gb|EFG76441.1| cytochrome c biogenesis membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=259
Score = 436 bits (1120), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 231/259 (90%), Positives = 241/259 (94%), Gaps = 0/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
M+GFT+IAA GPLLVA+G CLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQ P G VK
Sbjct 1 MSGFTQIAAAGPLLVALGACLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQPPPGAVK 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P +ARWRVAGSAALFVAGFTTVFVLGTVAVLGMTT LITNQLLLQRVGGVL +VMGLVF
Sbjct 61 APPSARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTALITNQLLLQRVGGVLTIVMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VG I ALQRQARF+PRQLT+VAGAP+LGAVFALGWTPCLGPTL GVITVASAT+GASVAR
Sbjct 121 VGLIPALQRQARFSPRQLTTVAGAPLLGAVFALGWTPCLGPTLAGVITVASATDGASVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLVIAYCLGLGIPFVLLAFGSA AV LGWLRRHTRAIQIFGGALLIAVGA LV+G W
Sbjct 181 GIVLVIAYCLGLGIPFVLLAFGSAGAVGALGWLRRHTRAIQIFGGALLIAVGALLVSGAW 240
Query 241 NDVVSWLRDAFVSDVRLPI 259
ND VSWLRDAFVSDVRLPI
Sbjct 241 NDFVSWLRDAFVSDVRLPI 259
>gi|183980894|ref|YP_001849185.1| cytochrome C-type biogenesis protein, CcsA [Mycobacterium marinum
M]
gi|183174220|gb|ACC39330.1| cytochrome C-type biogenesis protein, CcsA [Mycobacterium marinum
M]
Length=263
Score = 422 bits (1084), Expect = 3e-116, Method: Compositional matrix adjust.
Identities = 228/263 (87%), Positives = 242/263 (93%), Gaps = 4/263 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD---EQLPAG 57
MTGF E+AA GPLLVA+G+C+LAGLVSFASPCVVPLVPGYLSYLAAVVGVD + AG
Sbjct 1 MTGFAEVAAAGPLLVALGLCVLAGLVSFASPCVVPLVPGYLSYLAAVVGVDGSGDGRAAG 60
Query 58 V-VKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVM 116
V VK P RWRVAGSA LFVAGFTTVFVLGTVAVLGMTTTLI+NQL+LQR GGVL ++M
Sbjct 61 VGVKAPAGVRWRVAGSALLFVAGFTTVFVLGTVAVLGMTTTLISNQLVLQRAGGVLTIIM 120
Query 117 GLVFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGA 176
GLVFVG I ALQRQARF+PRQ+T+VAGAP+LGAVFALGWTPCLGPTLTGVITVASAT+GA
Sbjct 121 GLVFVGLIPALQRQARFSPRQVTTVAGAPLLGAVFALGWTPCLGPTLTGVITVASATDGA 180
Query 177 SVARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALV 236
SVARGIVLVIAYCLGLGIPFVLLAFGSA AVAGLGWLRRHTRAIQIFGG LLIAVG ALV
Sbjct 181 SVARGIVLVIAYCLGLGIPFVLLAFGSAGAVAGLGWLRRHTRAIQIFGGVLLIAVGLALV 240
Query 237 TGVWNDVVSWLRDAFVSDVRLPI 259
TGVWNDVVSWLRDAFVSDVRLPI
Sbjct 241 TGVWNDVVSWLRDAFVSDVRLPI 263
>gi|289756605|ref|ZP_06515983.1| cytochrome C-type biogenesis protein ccdA [Mycobacterium tuberculosis
T85]
gi|289712169|gb|EFD76181.1| cytochrome C-type biogenesis protein ccdA [Mycobacterium tuberculosis
T85]
Length=228
Score = 421 bits (1081), Expect = 7e-116, Method: Compositional matrix adjust.
Identities = 226/228 (99%), Positives = 226/228 (99%), Gaps = 0/228 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK
Sbjct 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF
Sbjct 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR
Sbjct 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALL 228
GIVLVIAYCLGLGIPFVLLAFGSAWAVAGL LRRHTRAIQIFGGALL
Sbjct 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLSCLRRHTRAIQIFGGALL 228
>gi|118616431|ref|YP_904763.1| cytochrome C-type biogenesis protein, CcsA [Mycobacterium ulcerans
Agy99]
gi|118568541|gb|ABL03292.1| cytochrome C-type biogenesis protein, CcsA [Mycobacterium ulcerans
Agy99]
Length=263
Score = 419 bits (1078), Expect = 2e-115, Method: Compositional matrix adjust.
Identities = 227/263 (87%), Positives = 240/263 (92%), Gaps = 4/263 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD---EQLPAG 57
MTGF E+AA GPLLVA+G+C+LAGLVSFASPCVVPLVPGYLSYLAAVVGVD + AG
Sbjct 1 MTGFAEVAAAGPLLVALGLCVLAGLVSFASPCVVPLVPGYLSYLAAVVGVDGSGDGRAAG 60
Query 58 V-VKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVM 116
V VK P RWRVAGSA LFVAGFTTVFVLGTVAVLGMTTTLI+NQL+LQR GGVL ++M
Sbjct 61 VGVKAPAGVRWRVAGSALLFVAGFTTVFVLGTVAVLGMTTTLISNQLVLQRAGGVLTIIM 120
Query 117 GLVFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGA 176
GLVFVG I ALQRQARF+PRQ+T+VAGAP+LGAVFALGWTPCLGPTLTGVITVASAT GA
Sbjct 121 GLVFVGLIPALQRQARFSPRQVTTVAGAPLLGAVFALGWTPCLGPTLTGVITVASATNGA 180
Query 177 SVARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALV 236
SVARGIVLVIAYCLGLGIPFVLLAFGSA AVAGLGWLRRHTRAIQIFGG LLI VG ALV
Sbjct 181 SVARGIVLVIAYCLGLGIPFVLLAFGSAGAVAGLGWLRRHTRAIQIFGGVLLIVVGLALV 240
Query 237 TGVWNDVVSWLRDAFVSDVRLPI 259
TGVWNDVVSWLRDAFVSDVRLPI
Sbjct 241 TGVWNDVVSWLRDAFVSDVRLPI 263
>gi|41410121|ref|NP_962957.1| CcsA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118463497|ref|YP_883747.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium
avium 104]
gi|41398954|gb|AAS06573.1| CcsA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118164784|gb|ABK65681.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium
avium 104]
gi|336460501|gb|EGO39396.1| cytochrome c biogenesis protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=259
Score = 411 bits (1056), Expect = 6e-113, Method: Compositional matrix adjust.
Identities = 228/259 (89%), Positives = 239/259 (93%), Gaps = 0/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTG T+IAA GPLL A+GVCLLAGLVSFASPCVVPLVPGYLSYLAA+VGV+EQ AG V+
Sbjct 1 MTGLTQIAAAGPLLAALGVCLLAGLVSFASPCVVPLVPGYLSYLAALVGVEEQPQAGAVQ 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P ARWRVAGSAALFVAGFT VFVLGTVAVLGMTTTLITNQLLLQR GGVL +VMGLVF
Sbjct 61 APPGARWRVAGSAALFVAGFTAVFVLGTVAVLGMTTTLITNQLLLQRAGGVLTIVMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VG I ALQRQARF+PRQLT+VAGAP+LGAVFALGWTPCLGPTL GVITVASAT+GASVAR
Sbjct 121 VGLIPALQRQARFSPRQLTTVAGAPLLGAVFALGWTPCLGPTLAGVITVASATDGASVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLVIAYCLGLGIPFVLLAFGSA AVAGLGWLRRHTRAIQIFGG LLI VGA LVTG+W
Sbjct 181 GIVLVIAYCLGLGIPFVLLAFGSAGAVAGLGWLRRHTRAIQIFGGVLLITVGALLVTGLW 240
Query 241 NDVVSWLRDAFVSDVRLPI 259
ND VSWLRDAFVSDVRLPI
Sbjct 241 NDFVSWLRDAFVSDVRLPI 259
>gi|240171275|ref|ZP_04749934.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium
kansasii ATCC 12478]
Length=254
Score = 397 bits (1019), Expect = 1e-108, Method: Compositional matrix adjust.
Identities = 221/259 (86%), Positives = 239/259 (93%), Gaps = 5/259 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTGFTEIAA GPLL+A+GVC+LAGLVSFASPCVVPLVPGYLSYLA VVGV+E+ +
Sbjct 1 MTGFTEIAAAGPLLLALGVCVLAGLVSFASPCVVPLVPGYLSYLAGVVGVNEE-----PR 55
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P AARWRVAGSAALFVAGFT VFVLGTVAVLGMTTTLI+NQ+LLQRVGGVL VVMGLVF
Sbjct 56 PQPAARWRVAGSAALFVAGFTAVFVLGTVAVLGMTTTLISNQVLLQRVGGVLTVVMGLVF 115
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VG I ALQRQ +F+PR LT+VAGAP+LGAVFALGWTPCLGPTLTGVITVASAT+GASVAR
Sbjct 116 VGLIPALQRQVKFSPRLLTTVAGAPLLGAVFALGWTPCLGPTLTGVITVASATDGASVAR 175
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLVIAYCLGLGIPF+LLAFG+A AVAGLGWLRRHTRAIQ+FGG LLIAVG ALVTGVW
Sbjct 176 GIVLVIAYCLGLGIPFILLAFGTAGAVAGLGWLRRHTRAIQVFGGVLLIAVGLALVTGVW 235
Query 241 NDVVSWLRDAFVSDVRLPI 259
NDV++WLRDA VSDVRLPI
Sbjct 236 NDVIAWLRDAVVSDVRLPI 254
>gi|108797673|ref|YP_637870.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. MCS]
gi|119866760|ref|YP_936712.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. KMS]
gi|126433297|ref|YP_001068988.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. JLS]
gi|108768092|gb|ABG06814.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. MCS]
gi|119692849|gb|ABL89922.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. KMS]
gi|126233097|gb|ABN96497.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. JLS]
Length=259
Score = 395 bits (1014), Expect = 4e-108, Method: Compositional matrix adjust.
Identities = 207/259 (80%), Positives = 228/259 (89%), Gaps = 0/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTGF EIAA GP+ +A+G+C+LAGLVSFASPCVVPLVPGYLSYLAAVVGVD
Sbjct 1 MTGFAEIAAAGPVALAMGLCVLAGLVSFASPCVVPLVPGYLSYLAAVVGVDTDETGSGAV 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
R +VAG+A LFVAGFT VF+LGTVAVLGMTTTLITNQLLLQR+GGV+ ++MGLVF
Sbjct 61 AVRTRRLKVAGAAGLFVAGFTAVFLLGTVAVLGMTTTLITNQLLLQRIGGVVTIIMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+G I ALQRQARFTPRQL++VAGAP+LGAVFALGWTPCLGPTLTGVITVASAT+GASVAR
Sbjct 121 IGLIPALQRQARFTPRQLSTVAGAPLLGAVFALGWTPCLGPTLTGVITVASATDGASVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
G+ LVIAYCLGLGIPFVLLAFGSA AV GLGWLRRHTR IQIFGG LL+ VGAALVTGVW
Sbjct 181 GVALVIAYCLGLGIPFVLLAFGSARAVQGLGWLRRHTRTIQIFGGVLLLIVGAALVTGVW 240
Query 241 NDVVSWLRDAFVSDVRLPI 259
ND V+W+RD FVSDVRLPI
Sbjct 241 NDFVAWVRDGFVSDVRLPI 259
>gi|118471789|ref|YP_885374.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium
smegmatis str. MC2 155]
gi|118173076|gb|ABK73972.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium
smegmatis str. MC2 155]
Length=261
Score = 392 bits (1007), Expect = 3e-107, Method: Compositional matrix adjust.
Identities = 212/262 (81%), Positives = 233/262 (89%), Gaps = 4/262 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
MTGF EIAA GP+L+A+GV +LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+ P
Sbjct 1 MTGFAEIAAAGPVLLALGVSVLAGLVSFASPCVVPLVPGYLSYLAAVVGVDDD-PVRTGG 59
Query 61 PPVA---ARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMG 117
VA AR RVAG+AALFVAGFT VF+LG VAVLGMTTTLI NQLLLQR+GGV+ +VMG
Sbjct 60 ERVALRSARLRVAGAAALFVAGFTVVFLLGAVAVLGMTTTLIANQLLLQRIGGVVTIVMG 119
Query 118 LVFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGAS 177
LVFVGFI ALQRQARFTPRQL++VAGAP+LGAVFALGWTPCLGPTLTGVI VASAT+GA+
Sbjct 120 LVFVGFIPALQRQARFTPRQLSTVAGAPLLGAVFALGWTPCLGPTLTGVIAVASATDGAT 179
Query 178 VARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVT 237
VARG+VLV+AYCLGLGIPFVLLA GSA AV GLGWLRRHTR IQIFGG LLI VGAALVT
Sbjct 180 VARGVVLVLAYCLGLGIPFVLLALGSARAVQGLGWLRRHTRTIQIFGGVLLILVGAALVT 239
Query 238 GVWNDVVSWLRDAFVSDVRLPI 259
G+WN+ VS++RDAFVSDVRLPI
Sbjct 240 GLWNEFVSYVRDAFVSDVRLPI 261
>gi|15828297|ref|NP_302560.1| cytochrome C-type biogenesis protein [Mycobacterium leprae TN]
gi|221230774|ref|YP_002504190.1| putative cytochrome C-type biogenesis protein [Mycobacterium
leprae Br4923]
gi|467042|gb|AAA17226.1| B2168_C1_192 [Mycobacterium leprae]
gi|13093990|emb|CAC31927.1| possible cytochrome C-type biogenesis protein [Mycobacterium
leprae]
gi|219933881|emb|CAR72509.1| possible cytochrome C-type biogenesis protein [Mycobacterium
leprae Br4923]
Length=262
Score = 386 bits (991), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 207/262 (80%), Positives = 232/262 (89%), Gaps = 3/262 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGV--DEQLP-AG 57
MTGFTEIAA GPLLVA+GVC+LAGLVSF SPCVVPLVPGYLSYLAAVVGV +E P AG
Sbjct 1 MTGFTEIAAAGPLLVALGVCMLAGLVSFVSPCVVPLVPGYLSYLAAVVGVSHEETQPGAG 60
Query 58 VVKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMG 117
V+K P AARWRVAGSA LFVAGFTTVFVL TVAVLGMTT L T+Q+LLQRVGGVL +VMG
Sbjct 61 VIKTPPAARWRVAGSAVLFVAGFTTVFVLDTVAVLGMTTVLTTHQVLLQRVGGVLTIVMG 120
Query 118 LVFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGAS 177
LVFVG + ALQRQ +F+ RQLT+VAGAPVLG VFALGWTPCLGPTL+GVITVA+AT+G +
Sbjct 121 LVFVGLLPALQRQVQFSLRQLTTVAGAPVLGTVFALGWTPCLGPTLSGVITVAAATDGVN 180
Query 178 VARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVT 237
V RGI+LVIAYC+GLGIPFVLLA GSA AVAGL WLR++ RAIQ+FGG LLIA+GAAL+
Sbjct 181 VTRGILLVIAYCMGLGIPFVLLASGSAQAVAGLRWLRQYGRAIQVFGGMLLIAIGAALIA 240
Query 238 GVWNDVVSWLRDAFVSDVRLPI 259
GVW+D VSWLRDA VSD+R+ I
Sbjct 241 GVWDDFVSWLRDAVVSDMRVSI 262
>gi|333989165|ref|YP_004521779.1| cytochrome C-type biogenesis protein CcsA [Mycobacterium sp.
JDM601]
gi|333485133|gb|AEF34525.1| cytochrome C-type biogenesis protein CcsA [Mycobacterium sp.
JDM601]
Length=259
Score = 380 bits (975), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 199/259 (77%), Positives = 221/259 (86%), Gaps = 0/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
M+ T IA GPLL+AV V LAGLVSFASPCVVPLVPGYLSYLAAVVG+DE G +K
Sbjct 1 MSSLTAIATTGPLLLAVAVSALAGLVSFASPCVVPLVPGYLSYLAAVVGIDETPEPGTLK 60
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P A RWRVAGSAALFVAGFT VF+LG++AVLGMTTTLI+NQ+LL+R+GGV+ + MGLVF
Sbjct 61 APPATRWRVAGSAALFVAGFTAVFLLGSIAVLGMTTTLISNQVLLERIGGVVTIAMGLVF 120
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
VGF+ ALQRQ RF PRQL++V GAP+LGAVFALGWTPCLGPTLTGVI VASAT+G+ VAR
Sbjct 121 VGFVPALQRQVRFNPRQLSTVLGAPLLGAVFALGWTPCLGPTLTGVIAVASATDGSGVAR 180
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
G+VLVIAYCLGLGIPFV LAFGSA AVAGLGWLRRHTR IQI GG LLIAVG ALVTG W
Sbjct 181 GVVLVIAYCLGLGIPFVALAFGSASAVAGLGWLRRHTRTIQILGGVLLIAVGLALVTGAW 240
Query 241 NDVVSWLRDAFVSDVRLPI 259
V+ +RD VSDVRLPI
Sbjct 241 GHFVAAVRDGLVSDVRLPI 259
>gi|145220657|ref|YP_001131335.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
gi|145213143|gb|ABP42547.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
Length=261
Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 199/256 (78%), Positives = 226/256 (89%), Gaps = 2/256 (0%)
Query 5 TEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPVA 64
++ A GPLL+A+G+ LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+ PAG V
Sbjct 7 DQLTASGPLLLAMGLAALAGLVSFASPCVVPLVPGYLSYLAAVVGVDDG-PAGSGAVAVK 65
Query 65 -ARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGF 123
AR RVAG+AALFVAGFT VF+LGTVAVLGMTTTLITNQLLLQR+GGV+ ++MGLVF+G
Sbjct 66 GARLRVAGAAALFVAGFTVVFLLGTVAVLGMTTTLITNQLLLQRIGGVITILMGLVFIGL 125
Query 124 IGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIV 183
+ LQR RFTPR++++V GAP+LGAVFALGWTPCLGPTLTGVI VASATEG++VARG+V
Sbjct 126 VPVLQRDTRFTPRRISTVGGAPLLGAVFALGWTPCLGPTLTGVIAVASATEGSNVARGVV 185
Query 184 LVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDV 243
LVIAYCLGLGIPFVLLAFGSA AVAGLGWLRR+TR IQI GG L+I VGAALVTG+WN+
Sbjct 186 LVIAYCLGLGIPFVLLAFGSARAVAGLGWLRRNTRTIQILGGVLMILVGAALVTGLWNEF 245
Query 244 VSWLRDAFVSDVRLPI 259
VSW+RDAFVSDVRLPI
Sbjct 246 VSWVRDAFVSDVRLPI 261
>gi|315442393|ref|YP_004075272.1| cytochrome C biogenesis protein [Mycobacterium sp. Spyr1]
gi|315260696|gb|ADT97437.1| cytochrome c biogenesis protein [Mycobacterium sp. Spyr1]
Length=261
Score = 354 bits (909), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/254 (77%), Positives = 222/254 (88%), Gaps = 0/254 (0%)
Query 6 EIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPVAA 65
++ A GPLL+A+G+ LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+ A
Sbjct 8 QLTASGPLLLAMGLAALAGLVSFASPCVVPLVPGYLSYLAAVVGVDDGTAGSGAVAVKGA 67
Query 66 RWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGFIG 125
R RVAG+AALFVAGFT VF+LGTVAVLGMTTTLITNQLLLQR+GGV+ ++MGLVF+G +
Sbjct 68 RLRVAGAAALFVAGFTVVFLLGTVAVLGMTTTLITNQLLLQRIGGVITILMGLVFIGLVP 127
Query 126 ALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIVLV 185
LQR RFTPR++++V GAP+LGAVFALGWTPCLGPTLTGVI VASATEG++VARG+VLV
Sbjct 128 VLQRDTRFTPRRISTVGGAPLLGAVFALGWTPCLGPTLTGVIAVASATEGSNVARGVVLV 187
Query 186 IAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDVVS 245
IAYCLGLGIPFVLLAFGS+ AVAGLGWLRR+TR IQI GG L+I VGAALVTG+WN+ VS
Sbjct 188 IAYCLGLGIPFVLLAFGSSRAVAGLGWLRRNTRTIQILGGVLMILVGAALVTGLWNEFVS 247
Query 246 WLRDAFVSDVRLPI 259
W+RDAFVSDVRLPI
Sbjct 248 WVRDAFVSDVRLPI 261
>gi|120401882|ref|YP_951711.1| cytochrome c biogenesis transmembrane protein [Mycobacterium
vanbaalenii PYR-1]
gi|119954700|gb|ABM11705.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
vanbaalenii PYR-1]
Length=264
Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/257 (76%), Positives = 220/257 (86%), Gaps = 3/257 (1%)
Query 6 EIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPV-- 63
++ A GPLL+A G+ LAGLVSFASPCV+PLVPGYLSYLAAVVGVD+ V
Sbjct 8 QLTATGPLLLATGLAALAGLVSFASPCVIPLVPGYLSYLAAVVGVDQSAAGSAAPGAVAV 67
Query 64 -AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVG 122
AR RVAG+A LFVAGFT VF+LGTVAVLGMTT LITNQLLLQR+GGV+ ++MGLVF+G
Sbjct 68 KGARLRVAGAAGLFVAGFTVVFLLGTVAVLGMTTALITNQLLLQRLGGVVTILMGLVFIG 127
Query 123 FIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGI 182
+ LQR RFTPRQ++++ GAP+LGAVFALGWTPCLGPTLTGVI VASATEG++VARG+
Sbjct 128 LVPVLQRDTRFTPRQISTLGGAPLLGAVFALGWTPCLGPTLTGVIAVASATEGSNVARGV 187
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
VLVIAYCLGLGIPFVLLAFGSA AVAGLGWLRRHTR IQ+ GG L+I VGAALVTG+WND
Sbjct 188 VLVIAYCLGLGIPFVLLAFGSARAVAGLGWLRRHTRTIQVLGGVLMILVGAALVTGLWND 247
Query 243 VVSWLRDAFVSDVRLPI 259
VSW+RDAFVSDVRLPI
Sbjct 248 FVSWIRDAFVSDVRLPI 264
>gi|315441671|ref|YP_004074548.1| cytochrome c biogenesis protein [Mycobacterium sp. Spyr1]
gi|315265326|gb|ADU02067.1| cytochrome c biogenesis protein [Mycobacterium sp. Spyr1]
Length=255
Score = 351 bits (901), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 175/259 (68%), Positives = 218/259 (85%), Gaps = 4/259 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
M GFTEIA G +L+AV V LAGLVSFASPCV+PLVPGYLSYLAAVVGVDEQ +
Sbjct 1 MNGFTEIAMSGHVLLAVLVSALAGLVSFASPCVIPLVPGYLSYLAAVVGVDEQSQS---- 56
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
+AR RV +A LF+AGFT VF++GT+A+LG+T T+ITNQ+LLQR+GG + ++MGLVF
Sbjct 57 TSRSARLRVTAAAGLFIAGFTAVFLMGTIAILGLTATVITNQVLLQRIGGAVTILMGLVF 116
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+GF+ ALQRQARFTP+ ++++AGAP+LG VF LGWTPCLGPTLTGVI ++SAT G+++AR
Sbjct 117 MGFVPALQRQARFTPKSMSTIAGAPLLGGVFGLGWTPCLGPTLTGVIAMSSATNGSAIAR 176
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
G+VLV+AYCLGLGIPFVLLA GSA AV +GWLRR+TR IQIFGG LL+AVG ALV+G+W
Sbjct 177 GVVLVVAYCLGLGIPFVLLALGSARAVHAMGWLRRNTREIQIFGGVLLVAVGLALVSGLW 236
Query 241 NDVVSWLRDAFVSDVRLPI 259
N+ +SW+RD FV++ LPI
Sbjct 237 NEFISWVRDTFVTNTTLPI 255
>gi|145225926|ref|YP_001136580.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
gi|145218389|gb|ABP47792.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
Length=256
Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 182/259 (71%), Positives = 214/259 (83%), Gaps = 3/259 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
M G T IA G +L+AV V LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+Q A +
Sbjct 1 MDGVTAIATSGHVLLAVFVSALAGLVSFASPCVVPLVPGYLSYLAAVVGVDDQARA---Q 57
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P AR R+AG+A LFVAGFT VF++GTVA+LG+TTT+ITN +LLQR+GGV+ +VMGLVF
Sbjct 58 PLGRARLRLAGAAGLFVAGFTAVFLMGTVAILGLTTTIITNGVLLQRIGGVVTIVMGLVF 117
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+GF ALQR ARFTP L+++ GAPVLGAVF LGWTPCLGPTLTGVI VASATEG +VAR
Sbjct 118 MGFFPALQRDARFTPTSLSTLWGAPVLGAVFGLGWTPCLGPTLTGVIAVASATEGPNVAR 177
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GI LV+AYC+GLG PFVL A S A+ LGWLRR+TR IQ+FGG LL+AVG AL+TG+W
Sbjct 178 GIALVVAYCVGLGAPFVLFALASGRAMRALGWLRRNTRRIQVFGGVLLVAVGIALLTGLW 237
Query 241 NDVVSWLRDAFVSDVRLPI 259
N+VVSW+RDAFV++ LPI
Sbjct 238 NEVVSWVRDAFVTNTTLPI 256
>gi|120404656|ref|YP_954485.1| cytochrome c biogenesis transmembrane protein [Mycobacterium
vanbaalenii PYR-1]
gi|119957474|gb|ABM14479.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
vanbaalenii PYR-1]
Length=256
Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/259 (71%), Positives = 213/259 (83%), Gaps = 3/259 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
M G T IA G +L+AV V LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+Q A +
Sbjct 1 MDGVTAIATSGHVLLAVFVSALAGLVSFASPCVVPLVPGYLSYLAAVVGVDDQARA---Q 57
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P AR R+AG+A LFVAGFT VF++GTVA+LG+TTTLITN +LLQR+GGV+ +VMGLVF
Sbjct 58 PLGRARLRLAGAAGLFVAGFTAVFLMGTVAILGLTTTLITNGVLLQRIGGVVTIVMGLVF 117
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+GF ALQR ARFTP L+++ GAP+LGAVF LGWTPCLGPTLTGVI VASA+EG +V R
Sbjct 118 MGFFPALQRDARFTPTSLSTLWGAPLLGAVFGLGWTPCLGPTLTGVIAVASASEGPNVVR 177
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLV+AYC+GLG PFVL A S A+ LGWLRR+ R IQ+FGG LL+AVG ALVTG+W
Sbjct 178 GIVLVVAYCVGLGAPFVLFALASGRAMRALGWLRRNARRIQVFGGVLLVAVGIALVTGLW 237
Query 241 NDVVSWLRDAFVSDVRLPI 259
N+VVSW+RDAFVS+ LPI
Sbjct 238 NEVVSWVRDAFVSNTTLPI 256
>gi|169631054|ref|YP_001704703.1| putative cytochrome C biogenesis protein CcdA [Mycobacterium
abscessus ATCC 19977]
gi|169243021|emb|CAM64049.1| Putative cytochrome C biogenesis protein CcdA [Mycobacterium
abscessus]
Length=263
Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 185/258 (72%), Positives = 214/258 (83%), Gaps = 2/258 (0%)
Query 2 TGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKP 61
+ F + A GPLL+A+G C LAGLVSFASPCV+PLVPGYLSYLAAVVG D G
Sbjct 8 SAFQDAATSGPLLLALGACALAGLVSFASPCVIPLVPGYLSYLAAVVGADNGPENGAGAQ 67
Query 62 PVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFV 121
P R RV GSA LFVAGFT VF+LGTVAV+GMTT+LITNQ+LLQR+GGV+ + MGLVF+
Sbjct 68 P--HRLRVTGSALLFVAGFTAVFLLGTVAVMGMTTSLITNQVLLQRIGGVVTIAMGLVFI 125
Query 122 GFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARG 181
G + ALQR RFTPR++++VAGAP+LGAVFALGWTPCLGPTLTGV+ VASATEGA VARG
Sbjct 126 GLVPALQRDIRFTPRRVSTVAGAPLLGAVFALGWTPCLGPTLTGVVAVASATEGADVARG 185
Query 182 IVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWN 241
I LVIAYCLGLG+PF+LLAFGSA AV G+ WLRRHTR IQ+ GG L+AVG AL+TGVW
Sbjct 186 IALVIAYCLGLGMPFLLLAFGSARAVRGMDWLRRHTRMIQVIGGIALLAVGVALITGVWA 245
Query 242 DVVSWLRDAFVSDVRLPI 259
D V+W+RD+FVSD RLPI
Sbjct 246 DFVAWVRDSFVSDARLPI 263
>gi|119855070|ref|YP_935675.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. KMS]
gi|119697788|gb|ABL94860.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. KMS]
Length=256
Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 181/259 (70%), Positives = 214/259 (83%), Gaps = 3/259 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
M G T IA G +L+AV V LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+Q A +
Sbjct 1 MDGVTAIATSGHVLLAVFVSALAGLVSFASPCVVPLVPGYLSYLAAVVGVDDQARA---Q 57
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P AR R+AG+A LFVAGFT VF++GTVA+LG+TTTLITN +LLQR+GGV+ +VMGLVF
Sbjct 58 PLGRARLRLAGAAGLFVAGFTAVFLMGTVAILGLTTTLITNGVLLQRIGGVVTIVMGLVF 117
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+GF ALQR ARFTP L+++ GAP+LGAVF LGWTPCLGPTLTGVI VASA+EG +V R
Sbjct 118 MGFFPALQRDARFTPTSLSTLWGAPLLGAVFGLGWTPCLGPTLTGVIAVASASEGPNVVR 177
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLV+AYC+GLG PFVL A S A+ LGWLRR+TR IQ+FGG LL+AVG AL+TG+W
Sbjct 178 GIVLVVAYCVGLGAPFVLFALASGRAMRALGWLRRNTRRIQVFGGVLLVAVGIALLTGLW 237
Query 241 NDVVSWLRDAFVSDVRLPI 259
N+VVSW+RDAFV++ LPI
Sbjct 238 NEVVSWVRDAFVTNTTLPI 256
>gi|145225963|ref|YP_001136617.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
gi|145218426|gb|ABP47829.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
Length=278
Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 181/259 (70%), Positives = 213/259 (83%), Gaps = 3/259 (1%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
+ G T IA G +L+AV V LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+Q A +
Sbjct 23 VDGVTAIATSGHVLLAVFVSALAGLVSFASPCVVPLVPGYLSYLAAVVGVDDQARA---Q 79
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P AR RVAG+A LFV GFT VF++GTVA+LG+TTT+ITN +LLQR+GGV+ +VMGLVF
Sbjct 80 PLARARLRVAGAAGLFVVGFTAVFLMGTVAILGLTTTIITNGVLLQRIGGVVTIVMGLVF 139
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+GF ALQR ARFTP L+++ GAPVLGAVF LGWTPCLGPTLTGVI VASATEG +VAR
Sbjct 140 MGFFPALQRDARFTPTSLSTLWGAPVLGAVFGLGWTPCLGPTLTGVIAVASATEGPNVAR 199
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GI LV+AYC+GLG PFVL A S A+ LGWLRR+TR IQ+FGG LL+AVG AL+TG+W
Sbjct 200 GIALVVAYCVGLGAPFVLFALASGRAMRALGWLRRNTRRIQVFGGVLLVAVGIALLTGLW 259
Query 241 NDVVSWLRDAFVSDVRLPI 259
N+VVSW+RDAFV++ LPI
Sbjct 260 NEVVSWVRDAFVTNTTLPI 278
>gi|145223412|ref|YP_001134090.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
gi|145215898|gb|ABP45302.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
gilvum PYR-GCK]
Length=257
Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/259 (70%), Positives = 210/259 (82%), Gaps = 2/259 (0%)
Query 1 MTGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVK 60
M G T IA G +L+AV V LAGLVSFASPCVVPLVPGYLSYLAAVVGVD+ +
Sbjct 1 MDGVTAIATSGHVLLAVFVSALAGLVSFASPCVVPLVPGYLSYLAAVVGVDDD--QARAQ 58
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
P AR RVAG+A LFV GFT VF++GTVA+LG+TTT+ITN +LLQR+GGV+ +VMGLVF
Sbjct 59 PLGRARLRVAGAAGLFVVGFTAVFLMGTVAILGLTTTIITNGVLLQRIGGVVTIVMGLVF 118
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+GF ALQR ARFTP L+++ GAP+LGAVF LGWTPCLGPTLTGVI VASATEG +V R
Sbjct 119 MGFFPALQRDARFTPTSLSTLWGAPLLGAVFGLGWTPCLGPTLTGVIAVASATEGPNVVR 178
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
GIVLV+AYC+GLG PFVL A S A+ LGWLRR+ R IQ+FGG LL+AVG AL+TG+W
Sbjct 179 GIVLVVAYCVGLGAPFVLFALASGRAMRALGWLRRNARRIQVFGGVLLVAVGIALLTGLW 238
Query 241 NDVVSWLRDAFVSDVRLPI 259
N+VVSW+RDAFVS+ LPI
Sbjct 239 NEVVSWVRDAFVSNTTLPI 257
>gi|333918040|ref|YP_004491621.1| cytochrome c biogenesis membrane protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480261|gb|AEF38821.1| Cytochrome c biogenesis membrane protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=277
Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/264 (65%), Positives = 207/264 (79%), Gaps = 8/264 (3%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD--EQLP------ 55
F A GPLL+A+ VC+LAGLVSFASPCVVPLVPGYLSYLA +VGVD E P
Sbjct 14 FQNTAVDGPLLLALAVCMLAGLVSFASPCVVPLVPGYLSYLAGLVGVDAPEVTPREASRT 73
Query 56 AGVVKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVV 115
A + K RWRVAG+AALFV+GFT VFVL T ++ GM + L N+ LLQRVGGV+ ++
Sbjct 74 ATLTKLRDRTRWRVAGAAALFVSGFTVVFVLATASIFGMISVLSLNRELLQRVGGVVTIL 133
Query 116 MGLVFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEG 175
MGLVF+GFI LQR ARF+PR +S+AGAPVLG VF LGWTPCLGPTL GVI++A+ TEG
Sbjct 134 MGLVFIGFIPLLQRDARFSPRHFSSLAGAPVLGGVFGLGWTPCLGPTLAGVISLAAGTEG 193
Query 176 ASVARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAAL 235
++ ARGIVL++AYCLGLG+PF++LAFGS A+ G+GWLRRH R +++FGG +LI VG AL
Sbjct 194 STAARGIVLIVAYCLGLGLPFIVLAFGSVSALRGVGWLRRHGREVKVFGGIMLILVGIAL 253
Query 236 VTGVWNDVVSWLRDAFVSDVRLPI 259
VTG W VSW+R+AF+SDV LPI
Sbjct 254 VTGAWEVFVSWVREAFISDVVLPI 277
>gi|254777055|ref|ZP_05218571.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium
avium subsp. avium ATCC 25291]
Length=191
Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 173/191 (91%), Positives = 180/191 (95%), Gaps = 0/191 (0%)
Query 69 VAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGFIGALQ 128
+AGSAALFVAGFT VFVLGTVAVLGMTTTLITNQLLLQR GGVL +VMGLVFVG I ALQ
Sbjct 1 MAGSAALFVAGFTAVFVLGTVAVLGMTTTLITNQLLLQRAGGVLTIVMGLVFVGLIPALQ 60
Query 129 RQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIVLVIAY 188
RQARF+PRQLT+VAGAP+LGAVFALGWTPCLGPTL GVITVASAT+GASVARGIVLVIAY
Sbjct 61 RQARFSPRQLTTVAGAPLLGAVFALGWTPCLGPTLAGVITVASATDGASVARGIVLVIAY 120
Query 189 CLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDVVSWLR 248
CLGLGIPFVLLAFGSA AVAGLGWLRRHTRAIQIFGG LLI VGA LVTG+WND VSWLR
Sbjct 121 CLGLGIPFVLLAFGSAGAVAGLGWLRRHTRAIQIFGGVLLITVGALLVTGLWNDFVSWLR 180
Query 249 DAFVSDVRLPI 259
DAFVSDVRLPI
Sbjct 181 DAFVSDVRLPI 191
>gi|33867172|ref|NP_898730.1| putative c-typ cytochrome biogenesis protein (CcdA) [Rhodococcus
erythropolis]
gi|33669006|gb|AAP74000.1| putative c-typ cytochrome biogenesis protein (CcdA) [Rhodococcus
erythropolis]
Length=268
Score = 322 bits (824), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 166/259 (65%), Positives = 202/259 (78%), Gaps = 1/259 (0%)
Query 2 TGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDE-QLPAGVVK 60
+ F AA GPLL+AV C+LAGLVSFASPCVVPLVPGYLSYLA + G D + G
Sbjct 10 SSFQTAAASGPLLLAVAACILAGLVSFASPCVVPLVPGYLSYLAGISGADSPAVTRGDET 69
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
A RWRV G+A +FVAGFT VFVL T +V G+ TL N+ LLQRVGGV+ +VMGL F
Sbjct 70 SEPAGRWRVTGAATMFVAGFTVVFVLATASVFGVIGTLRINEDLLQRVGGVITIVMGLTF 129
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+G I ALQ+ ARF PR+++S+AGAP+LG VFALGWTPCLGPTL GVI+VA+ TEG + AR
Sbjct 130 IGLIPALQKDARFAPRRISSLAGAPLLGGVFALGWTPCLGPTLAGVISVAAGTEGTTAAR 189
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
G++L++AYCLGLG+PF++LAFGSA A+ G+GWL+RH+R IQI GG +L+AVG ALVTGVW
Sbjct 190 GVILIVAYCLGLGLPFIVLAFGSAKALRGVGWLKRHSRTIQIVGGIMLVAVGLALVTGVW 249
Query 241 NDVVSWLRDAFVSDVRLPI 259
V WLR+ FVS V LPI
Sbjct 250 GMFVGWLRNEFVSSVVLPI 268
>gi|77454700|ref|YP_345568.1| putative cytochrome c biogenesis protein CcdA [Rhodococcus erythropolis
PR4]
gi|229493283|ref|ZP_04387074.1| cytochrome c biogenesis membrane protein [Rhodococcus erythropolis
SK121]
gi|77019700|dbj|BAE46076.1| putative cytochrome c biogenesis protein CcdA [Rhodococcus erythropolis
PR4]
gi|229319785|gb|EEN85615.1| cytochrome c biogenesis membrane protein [Rhodococcus erythropolis
SK121]
Length=268
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/259 (64%), Positives = 201/259 (78%), Gaps = 1/259 (0%)
Query 2 TGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDE-QLPAGVVK 60
+ F AA GPLL+AV C+LAGLVSFASPCVVPLVPGYLSYLA + G D + G
Sbjct 10 SSFQTAAASGPLLLAVAACILAGLVSFASPCVVPLVPGYLSYLAGISGADSPAVTRGDET 69
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
A RWRV G+A +FVAGFT VFVL T +V G+ TL N+ LLQRVGGV+ +VMGL F
Sbjct 70 SEPAGRWRVTGAATMFVAGFTVVFVLATASVFGVIGTLRINEDLLQRVGGVITIVMGLTF 129
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+G I ALQ+ RF PR+++S+AGAP+LG VFALGWTPCLGPTL GVI+VA+ TEG + AR
Sbjct 130 IGLIPALQKDTRFAPRRISSLAGAPLLGGVFALGWTPCLGPTLAGVISVAAGTEGTTAAR 189
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
G++L++AYCLGLG+PF++LAFGSA A+ G+GWL+RH+R IQI GG +L+AVG ALVTGVW
Sbjct 190 GVILIVAYCLGLGLPFIVLAFGSAKALRGVGWLKRHSRTIQIVGGIMLVAVGLALVTGVW 249
Query 241 NDVVSWLRDAFVSDVRLPI 259
V WLR+ FVS V LPI
Sbjct 250 GMFVGWLRNEFVSSVVLPI 268
>gi|312141073|ref|YP_004008409.1| cytochrome c assembly protein [Rhodococcus equi 103S]
gi|325674116|ref|ZP_08153806.1| cytochrome c biogenesis membrane protein [Rhodococcus equi ATCC
33707]
gi|311890412|emb|CBH49730.1| cytochrome c assembly protein [Rhodococcus equi 103S]
gi|325555381|gb|EGD25053.1| cytochrome c biogenesis membrane protein [Rhodococcus equi ATCC
33707]
Length=275
Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/261 (64%), Positives = 202/261 (78%), Gaps = 5/261 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD-----EQLPAGV 58
F AA GPLL+A+G C+LAGLVSFASPCVVPLVPGYLSYLA VVG D E A
Sbjct 15 FQSAAASGPLLLALGACVLAGLVSFASPCVVPLVPGYLSYLAGVVGADAPAVSEAEAATR 74
Query 59 VKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGL 118
+ R RVAG+A LFVAGFT VFVL TV+V G L N+ +LQRVGGV+ +VMGL
Sbjct 75 TRTLRDGRLRVAGAAGLFVAGFTVVFVLATVSVFGAIEALALNRDVLQRVGGVVTIVMGL 134
Query 119 VFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASV 178
VF+G + ALQ+ R PR+++S+AGAP+LG VFALGWTPCLGPTL GVI+VAS TEGA+
Sbjct 135 VFIGLVPALQKDTRMEPRRISSLAGAPLLGGVFALGWTPCLGPTLAGVISVASGTEGATA 194
Query 179 ARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTG 238
ARG+ L++AYCLGLG+PFV++A GSA A+ G+GWLRR+TR IQI GG +L+AVG ALVTG
Sbjct 195 ARGVALIVAYCLGLGLPFVIVALGSARALRGVGWLRRNTRTIQIIGGIMLVAVGIALVTG 254
Query 239 VWNDVVSWLRDAFVSDVRLPI 259
W+ V W+RDAF+S+V LPI
Sbjct 255 AWDQFVGWVRDAFISEVTLPI 275
>gi|229490574|ref|ZP_04384412.1| cytochrome c biogenesis membrane protein [Rhodococcus erythropolis
SK121]
gi|229322394|gb|EEN88177.1| cytochrome c biogenesis membrane protein [Rhodococcus erythropolis
SK121]
Length=282
Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 159/260 (62%), Positives = 204/260 (79%), Gaps = 4/260 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDE-QLPAGVVKPP 62
F A+ GPLL+A+G C+LAGLVSFASPCVVPLVPGYLSYLA VVG D + A +
Sbjct 23 FQNAASSGPLLLALGACVLAGLVSFASPCVVPLVPGYLSYLAGVVGADAPAITADEARTR 82
Query 63 V---AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLV 119
++R RVAG+A LFVAGFT VFVL T +V G+ +TL+ N+ +L RVGGV+ + MGLV
Sbjct 83 TITRSSRLRVAGAAGLFVAGFTVVFVLATASVFGVISTLLVNREVLMRVGGVVTIAMGLV 142
Query 120 FVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVA 179
F+G I ALQ+ RF PR+++S+ GAP+LG VFALGWTPCLGPTL GV++VA+ T+G + A
Sbjct 143 FIGLIPALQKDVRFEPRRVSSLVGAPLLGGVFALGWTPCLGPTLAGVMSVAAGTDGMTAA 202
Query 180 RGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGV 239
RG+ L++AYC+GLG+PF++LA GSA A+ G+GWLRR+ R IQIFGG +L+AVG ALVTG
Sbjct 203 RGVTLIVAYCIGLGLPFIILALGSARALTGVGWLRRNARTIQIFGGIMLVAVGIALVTGA 262
Query 240 WNDVVSWLRDAFVSDVRLPI 259
W+ V W+RDAF+S+V LPI
Sbjct 263 WDQFVGWVRDAFISEVTLPI 282
>gi|226305158|ref|YP_002765116.1| cytochrome c biogenesis protein CcdA [Rhodococcus erythropolis
PR4]
gi|226184273|dbj|BAH32377.1| cytochrome c biogenesis protein CcdA [Rhodococcus erythropolis
PR4]
Length=264
Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 159/260 (62%), Positives = 204/260 (79%), Gaps = 4/260 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDE-QLPAGVVKPP 62
F A+ GPLL+A+G C+LAGLVSFASPCVVPLVPGYLSYLA VVG D + A +
Sbjct 5 FQNAASSGPLLLALGACVLAGLVSFASPCVVPLVPGYLSYLAGVVGADAPAITADEARTR 64
Query 63 V---AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLV 119
++R RVAG+A LFVAGFT VFVL T +V G+ +TL+ N+ +L RVGGV+ + MGLV
Sbjct 65 TITRSSRLRVAGAAGLFVAGFTVVFVLATASVFGVISTLLVNREVLMRVGGVVTIAMGLV 124
Query 120 FVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVA 179
F+G I ALQ+ RF PR+++S+ GAP+LG VFALGWTPCLGPTL GV++VA+ T+G + A
Sbjct 125 FIGLIPALQKDVRFEPRRVSSLVGAPLLGGVFALGWTPCLGPTLAGVMSVAAGTDGMTAA 184
Query 180 RGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGV 239
RG+ L++AYC+GLG+PF++LA GSA A+ G+GWLRR+ R IQIFGG +L+AVG ALVTG
Sbjct 185 RGVTLIVAYCIGLGLPFIILALGSARALTGVGWLRRNARTIQIFGGIMLVAVGIALVTGA 244
Query 240 WNDVVSWLRDAFVSDVRLPI 259
W+ V W+RDAF+S+V LPI
Sbjct 245 WDQFVGWVRDAFISEVTLPI 264
>gi|40445320|ref|NP_954780.1| cytochrome c-type biosynthesis protein CCDA [Gordonia westfalica]
gi|40217350|emb|CAE09101.1| putative cytochrome c-type biosynthesis protein CCDA [Gordonia
westfalica]
Length=270
Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 158/257 (62%), Positives = 202/257 (79%), Gaps = 3/257 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPA-GVVKPP 62
F ++ A GPLL+A+ C++AGLVSFASPCVVPLVPGYLSYLA VVG + PA V +P
Sbjct 16 FADLVASGPLLLALLACVIAGLVSFASPCVVPLVPGYLSYLAGVVGAEA--PAVSVGEPN 73
Query 63 VAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVG 122
R RVA +A LFV GFT VFV T VLG+TTT + N+ +LQR+GGV+ ++MGLVF+G
Sbjct 74 KRGRSRVALAAGLFVLGFTVVFVAATATVLGVTTTFVVNREVLQRIGGVVTIIMGLVFIG 133
Query 123 FIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGI 182
+ ALQ++ RF PR+++++AGAP+LG VFALGWTPCLGPTL VI AS TEGA+ A+G+
Sbjct 134 LVPALQQERRFAPRRVSNIAGAPLLGGVFALGWTPCLGPTLAAVIATASGTEGATAAKGV 193
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
L++AYC GLGIPFV+LAF SAWA+ LGWLR H R IQI GGA++IAVG AL+TG+W+
Sbjct 194 ALIVAYCAGLGIPFVVLAFSSAWALRSLGWLRTHARMIQIVGGAMMIAVGIALITGLWDQ 253
Query 243 VVSWLRDAFVSDVRLPI 259
+ W+RDAF++D +LPI
Sbjct 254 FIVWVRDAFITDTQLPI 270
>gi|54027131|ref|YP_121373.1| putative cytochrome c biogenesis membrane protein [Nocardia farcinica
IFM 10152]
gi|54018639|dbj|BAD60009.1| putative cytochrome c biogenesis membrane protein [Nocardia farcinica
IFM 10152]
Length=276
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/266 (63%), Positives = 200/266 (76%), Gaps = 10/266 (3%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLP-------- 55
F + AA GP+L+A+G C+LAGLVSFASPCVVPLVPGYLSYLA +VG +
Sbjct 11 FQQTAATGPVLLALGACVLAGLVSFASPCVVPLVPGYLSYLAGLVGAEAPPATPAEAAEG 70
Query 56 --AGVVKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLI 113
A V AA+ RVAG+A LFVAGFT VFVL T V G+ TL N+ LLQRVGGV+
Sbjct 71 RVATVTTADRAAKLRVAGAAGLFVAGFTVVFVLATATVFGLIQTLNVNRDLLQRVGGVVT 130
Query 114 VVMGLVFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASAT 173
+VMGL F+G I ALQR R PR+LT + GAP+LG VFALGWTPCLGPTL+GV+ VA+ T
Sbjct 131 IVMGLAFLGLIPALQRDTRMAPRRLTGIVGAPLLGGVFALGWTPCLGPTLSGVMAVAAGT 190
Query 174 EGASVARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGA 233
EG + RG+ L++AYCLGLG+PF++LAFGSA A+ G+GWLRR++R IQI GG LL+AVG
Sbjct 191 EGTTAVRGVALIVAYCLGLGLPFIVLAFGSAGALRGVGWLRRNSRTIQIIGGLLLVAVGI 250
Query 234 ALVTGVWNDVVSWLRDAFVSDVRLPI 259
ALVTG W+ V W+RDAFVS+V LPI
Sbjct 251 ALVTGAWDQFVGWVRDAFVSEVTLPI 276
>gi|262202541|ref|YP_003273749.1| cytochrome C biogenesis protein transmembrane region [Gordonia
bronchialis DSM 43247]
gi|262085888|gb|ACY21856.1| cytochrome c biogenesis protein transmembrane region [Gordonia
bronchialis DSM 43247]
Length=270
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/257 (62%), Positives = 202/257 (79%), Gaps = 3/257 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPA-GVVKPP 62
F ++ GPLL+A+ C++AGLVSFASPCVVPLVPGYLSYLA VVG + PA V +P
Sbjct 16 FADVVVGGPLLLALLACVIAGLVSFASPCVVPLVPGYLSYLAGVVGAEA--PAVSVGEPT 73
Query 63 VAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVG 122
R RVA +A LFV GFT VFV T VLG+TTT + N+ +LQR+GGV+ ++MGLVF+G
Sbjct 74 KRGRSRVAAAAILFVGGFTVVFVAATATVLGVTTTFVVNREILQRIGGVVTIIMGLVFIG 133
Query 123 FIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGI 182
+ ALQ++ RF PR+++++AGAP+LGAVFALGWTPCLGPTL VI AS TEGA+ A+G+
Sbjct 134 LVPALQQERRFAPRRISNIAGAPLLGAVFALGWTPCLGPTLAAVIATASGTEGATAAKGV 193
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
L++AYC GLGIPFV+LAF SAWA+ LGWLR + R IQI GGA++IAVG ALVTG+W+
Sbjct 194 ALIVAYCAGLGIPFVVLAFSSAWALRSLGWLRTNARTIQIVGGAMMIAVGIALVTGLWDQ 253
Query 243 VVSWLRDAFVSDVRLPI 259
+ W+RDAF++D +LPI
Sbjct 254 FIVWVRDAFITDTQLPI 270
>gi|54027695|ref|YP_121936.1| hypothetical protein pnf1460 [Nocardia farcinica IFM 10152]
gi|54019203|dbj|BAD60572.1| putative membrane protein [Nocardia farcinica IFM 10152]
Length=269
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/260 (62%), Positives = 199/260 (77%), Gaps = 2/260 (0%)
Query 2 TGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLP-AGVVK 60
T F + AA GPL +A+ C++AGLVSFASPCVVPLVPGYLSYLA V G L A +
Sbjct 10 TSFQDAAATGPLFLALAACMVAGLVSFASPCVVPLVPGYLSYLAGVSGASATLSQADDIG 69
Query 61 PPVAA-RWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLV 119
P ++ RWRVAG+A LFVAGFT VFVL T +V G+ T L N LLQR+GGV+ +VMGL
Sbjct 70 PGRSSDRWRVAGAATLFVAGFTVVFVLATASVFGVITALRLNADLLQRIGGVVTIVMGLA 129
Query 120 FVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVA 179
F+G I ALQR RF P +++S+ GAP+LGAVF LGWTPCLGPTLTGV++VA+ TEG +
Sbjct 130 FIGLIPALQRDTRFAPVRVSSLLGAPLLGAVFGLGWTPCLGPTLTGVLSVAAGTEGTTAT 189
Query 180 RGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGV 239
RG+VL++AYCLGLG+PFV+L FGS+ A+ G+GWLRR+TR IQ GG LLI VG AL+TG+
Sbjct 190 RGVVLIVAYCLGLGMPFVVLGFGSSRALRGIGWLRRNTRRIQTIGGILLILVGTALITGI 249
Query 240 WNDVVSWLRDAFVSDVRLPI 259
W V+W+RD FV+ V LPI
Sbjct 250 WAQFVAWIRDEFVTAVVLPI 269
>gi|226361122|ref|YP_002778900.1| cytochrome c biogenesis protein CcdA [Rhodococcus opacus B4]
gi|226239607|dbj|BAH49955.1| cytochrome c biogenesis protein CcdA [Rhodococcus opacus B4]
Length=276
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 165/261 (64%), Positives = 202/261 (78%), Gaps = 5/261 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDE-----QLPAGV 58
F AA GPLL+A+G C+LAGLVSFASPCVVPLVPGYLSYLA VVG D + A
Sbjct 16 FQSTAATGPLLLALGACVLAGLVSFASPCVVPLVPGYLSYLAGVVGADAPAVTAEEAATR 75
Query 59 VKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGL 118
K R RVAG+AALFVAGFT VFVL T +V G + L N+ +L RVGGV+ + MGL
Sbjct 76 TKTVSDGRLRVAGAAALFVAGFTVVFVLATASVFGAISALAINRDILMRVGGVITIAMGL 135
Query 119 VFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASV 178
VF+G I ALQR R PR+++S+AGAP+LGAVFALGWTPCLGPTL GVI++A+ T+GA+
Sbjct 136 VFIGLIPALQRDTRLEPRRISSLAGAPLLGAVFALGWTPCLGPTLAGVISLAAGTDGATA 195
Query 179 ARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTG 238
ARG+ L++AYCLGLG+PFV+LA GS+ A+ G+GWLRR+ R IQIFGG +L+AVG ALVTG
Sbjct 196 ARGVALIVAYCLGLGLPFVILALGSSRALRGVGWLRRNARTIQIFGGIMLVAVGLALVTG 255
Query 239 VWNDVVSWLRDAFVSDVRLPI 259
W+ V W+RDAF+S+V LPI
Sbjct 256 AWDQFVGWVRDAFISEVTLPI 276
>gi|111019027|ref|YP_701999.1| cytochrome c biogenesis membrane protein [Rhodococcus jostii
RHA1]
gi|110818557|gb|ABG93841.1| cytochrome c biogenesis membrane protein [Rhodococcus jostii
RHA1]
Length=276
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 165/261 (64%), Positives = 202/261 (78%), Gaps = 5/261 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDE-----QLPAGV 58
F AA GPLL+A+G C+LAGLVSFASPCVVPLVPGYLSYLA VVG D + A
Sbjct 16 FQSTAASGPLLLALGACVLAGLVSFASPCVVPLVPGYLSYLAGVVGADAPAVTAEEAATR 75
Query 59 VKPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGL 118
K R RVAG+AALFVAGFT VFVL T +V G + L N+ +L RVGGV+ + MGL
Sbjct 76 TKTAADGRLRVAGAAALFVAGFTVVFVLATASVFGAISALAINRDVLMRVGGVVTIAMGL 135
Query 119 VFVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASV 178
VF+G I ALQR R PR+++S+AGAP+LGAVFALGWTPCLGPTL GVI++A+ T+GA+
Sbjct 136 VFIGLIPALQRDTRLEPRRISSLAGAPLLGAVFALGWTPCLGPTLAGVISLAAGTDGATA 195
Query 179 ARGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTG 238
ARG+ L++AYCLGLG+PFV+LA GS+ A+ G+GWLRR+ R IQIFGG +L+AVG ALVTG
Sbjct 196 ARGVALIVAYCLGLGLPFVILALGSSRALRGVGWLRRNARTIQIFGGIMLVAVGIALVTG 255
Query 239 VWNDVVSWLRDAFVSDVRLPI 259
W+ V W+RDAF+S+V LPI
Sbjct 256 AWDQFVGWVRDAFISEVTLPI 276
>gi|226349530|ref|YP_002776644.1| putative thiol-disulfide oxidoreductase [Rhodococcus opacus B4]
gi|226245445|dbj|BAH55792.1| putative thiol-disulfide oxidoreductase [Rhodococcus opacus B4]
Length=272
Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/259 (64%), Positives = 198/259 (77%), Gaps = 5/259 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPV 63
F AA GPLL+A+G C+LAGLVSFASPCVVPLVPGYLSYLA V G + PA
Sbjct 16 FQNAAATGPLLLALGACVLAGLVSFASPCVVPLVPGYLSYLAGVSGAET--PAVTPSGDC 73
Query 64 AA---RWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
AA RWRVAG+AALFV GFT VFVL T +V G+ L NQ LLQRVGG + +VMGLVF
Sbjct 74 AAGSDRWRVAGAAALFVTGFTVVFVLATASVFGVIGALRLNQELLQRVGGAITIVMGLVF 133
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+GFI ALQ+ RFTPR+++S+AGAP+LG VF LGWTPCLGPTL GV++VA+ TEGA+ AR
Sbjct 134 LGFIPALQKDTRFTPRRISSLAGAPLLGGVFGLGWTPCLGPTLAGVLSVAAGTEGATAAR 193
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
G+ L++AYCLGLG+PF+ L FGSA + G+GWLRRH+R IQI GG +LI VG AL++G W
Sbjct 194 GVALIVAYCLGLGLPFIALGFGSAKTLHGIGWLRRHSRTIQIVGGVMLIVVGTALLSGAW 253
Query 241 NDVVSWLRDAFVSDVRLPI 259
V WLR+ FV+ V LPI
Sbjct 254 ELFVGWLRNEFVTSVVLPI 272
>gi|262201032|ref|YP_003272240.1| cytochrome C biogenesis protein transmembrane region [Gordonia
bronchialis DSM 43247]
gi|262084379|gb|ACY20347.1| cytochrome c biogenesis protein transmembrane region [Gordonia
bronchialis DSM 43247]
Length=276
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/257 (62%), Positives = 195/257 (76%), Gaps = 3/257 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD-EQLPAGVVKPP 62
F GPLL+A+ CLLAGLVSFASPCVVPLVPGYLSYLA +VG + + AG +P
Sbjct 22 FQNTVLSGPLLLALAACLLAGLVSFASPCVVPLVPGYLSYLAGLVGAEAPAMTAG--EPA 79
Query 63 VAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVG 122
A R RVA +AALFV GFT VFV T V G T T + N +LQRVGGV+ ++MGLVF+G
Sbjct 80 KAGRHRVAMAAALFVVGFTAVFVAATATVFGFTQTYVLNHQVLQRVGGVITILMGLVFIG 139
Query 123 FIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGI 182
+ +QR RF PR+++S+ GAP+LGAVFALGWTPCLGPTL+ +I A+ T+G + A+G+
Sbjct 140 LVPMMQRDYRFHPRRVSSLVGAPLLGAVFALGWTPCLGPTLSAIIVTATGTQGVTAAKGV 199
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
L+IAYC+GLGIPFV+LAF SAWA+ LGWLRRH RAIQ+FGG +LI VG ALVTG+W+
Sbjct 200 SLIIAYCIGLGIPFVILAFSSAWALRSLGWLRRHARAIQVFGGIMLILVGVALVTGLWDQ 259
Query 243 VVSWLRDAFVSDVRLPI 259
W+R+AF+SD LPI
Sbjct 260 FTIWVREAFISDTELPI 276
>gi|262202583|ref|YP_003273791.1| cytochrome C biogenesis protein transmembrane region [Gordonia
bronchialis DSM 43247]
gi|262085930|gb|ACY21898.1| cytochrome c biogenesis protein transmembrane region [Gordonia
bronchialis DSM 43247]
Length=270
Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 158/257 (62%), Positives = 202/257 (79%), Gaps = 3/257 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPA-GVVKPP 62
F ++ GPLL+A+ C++AGLVSFASPCVVPLVPGYLSYLA VVG + PA V +P
Sbjct 16 FADVVVGGPLLLALLACVIAGLVSFASPCVVPLVPGYLSYLAGVVGAEA--PAVSVGEPT 73
Query 63 VAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVG 122
R RVA +A LFV GFT VFV T VLG+TTT + N+ +LQR+GGV+ ++MGLVF+G
Sbjct 74 KRGRSRVAAAAILFVVGFTVVFVAATATVLGVTTTFVVNREILQRIGGVVTIIMGLVFIG 133
Query 123 FIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGI 182
+ ALQ++ RF PR+++++AGAP+LGAVFALGWTPCLGPTL VI AS TEGA+ A+G+
Sbjct 134 LVPALQQERRFAPRRISNIAGAPMLGAVFALGWTPCLGPTLAAVIATASGTEGATAAKGV 193
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
L++AYC GLGIPFV+LAF SAWA+ LGWLR + R IQI GGA++IAVG ALVTG+W+
Sbjct 194 ALIVAYCAGLGIPFVVLAFSSAWALRSLGWLRTNARTIQIVGGAMMIAVGIALVTGLWDQ 253
Query 243 VVSWLRDAFVSDVRLPI 259
+ W+RDAF++D +LPI
Sbjct 254 FIVWVRDAFITDTQLPI 270
>gi|343925989|ref|ZP_08765504.1| cytochrome c biogenesis protein CcdA [Gordonia alkanivorans NBRC
16433]
gi|343764340|dbj|GAA12430.1| cytochrome c biogenesis protein CcdA [Gordonia alkanivorans NBRC
16433]
Length=276
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/257 (60%), Positives = 193/257 (76%), Gaps = 3/257 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD-EQLPAGVVKPP 62
F + GPLL+A+ CLLAGLVSFASPCVVPLVPGYLSYLA +VG + + AG +
Sbjct 22 FADTVTSGPLLLALAACLLAGLVSFASPCVVPLVPGYLSYLAGLVGAEAPAVKAG--EGA 79
Query 63 VAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVG 122
R RVA +A LFV GFT VFV T VLG+T+T + N+ LLQR+GGV+ + MGLVF+G
Sbjct 80 KTGRSRVALAAGLFVLGFTVVFVAATATVLGVTSTFVLNRELLQRIGGVVTIAMGLVFIG 139
Query 123 FIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGI 182
I ALQR+ RF P +++++ GAP+LGAVFALGWTPCLGPTL VI S TEGA+ A+G+
Sbjct 140 LIPALQREVRFEPVRVSNIVGAPLLGAVFALGWTPCLGPTLASVIATVSGTEGATAAKGV 199
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
L++AYCLGLG+PFV+LAF SAWA+ LGWLRR+ R IQI GG LLI VG AL+TG W+
Sbjct 200 TLIVAYCLGLGLPFVVLAFSSAWALRSLGWLRRNARTIQIIGGVLLIGVGVALLTGWWDQ 259
Query 243 VVSWLRDAFVSDVRLPI 259
+ W++ FV+D +LPI
Sbjct 260 FIVWVQVRFVTDTQLPI 276
>gi|227549767|ref|ZP_03979816.1| cytochrome c family biogenesis protein CcdA [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078153|gb|EEI16116.1| cytochrome c family biogenesis protein CcdA [Corynebacterium
lipophiloflavum DSM 44291]
Length=259
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 180/250 (72%), Gaps = 9/250 (3%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD----EQLPAGVV 59
F++I GPL+V + LAGLVSFASPCV+PLVPGYLSYL VVG + EQ P V
Sbjct 5 FSDIVMTGPLVVGILAAALAGLVSFASPCVIPLVPGYLSYLTGVVGGEMEYGEQGPRVVS 64
Query 60 KPPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLV 119
K RW VAG+A LF+ GFT VF+L TV+V G + + N L R GGV+ +VMGLV
Sbjct 65 K-----RWAVAGAAGLFILGFTVVFLLATVSVFGAISLIALNADTLMRAGGVVTIVMGLV 119
Query 120 FVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVA 179
F+G + LQR R P++ T++ GAP+LG VFALGWTPCLGPTL +I+V+ TEG + A
Sbjct 120 FIGAVPLLQRDTRMAPKKWTTIVGAPLLGGVFALGWTPCLGPTLAAIISVSVGTEGLTAA 179
Query 180 RGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGV 239
RG+ LVIAYCLGLG+PF+L+AFGSAWAVAG+ +LRRH+R IQI GG L+I VG LVTG
Sbjct 180 RGVFLVIAYCLGLGLPFLLMAFGSAWAVAGVDFLRRHSRTIQILGGVLMILVGLMLVTGA 239
Query 240 WNDVVSWLRD 249
WN ++W R
Sbjct 240 WNHFIAWSRQ 249
>gi|326383035|ref|ZP_08204724.1| cytochrome c-type biosynthesis protein CCDA [Gordonia neofelifaecis
NRRL B-59395]
gi|326198171|gb|EGD55356.1| cytochrome c-type biosynthesis protein CCDA [Gordonia neofelifaecis
NRRL B-59395]
Length=269
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 142/251 (57%), Positives = 179/251 (72%), Gaps = 3/251 (1%)
Query 11 GPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPVAARWRVA 70
GPLL+A+GVC+L GL+SFASPCVVPLVPGYLSYLA +VG E + + RWRV
Sbjct 20 GPLLLALGVCILVGLISFASPCVVPLVPGYLSYLAGLVGA-EAPAVSADEDRKSGRWRVV 78
Query 71 GSAALFVAGFTTVFVLGTVAVLGMTTTLITNQ--LLLQRVGGVLIVVMGLVFVGFIGALQ 128
G+A LFV GFT V+VL T A+ G+T+ + L+QR+GGV +VMGLVF+G I LQ
Sbjct 79 GAAGLFVLGFTVVYVLATAALFGVTSVFLDADRLQLMQRIGGVFTIVMGLVFIGMIPFLQ 138
Query 129 RQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIVLVIAY 188
R R PR+ + V GAP+LGAVFA+GW PC TL VI VA +T+G++ RG ++V AY
Sbjct 139 RDKRMAPRRYSGVIGAPILGAVFAVGWIPCSSATLGAVIGVAMSTDGSTPVRGALMVAAY 198
Query 189 CLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDVVSWLR 248
C GLGIPF++LAF SAWAV LG++RRH R IQI GG LLI VG LV G WN+ V W+R
Sbjct 199 CFGLGIPFMVLAFSSAWAVRSLGFVRRHARTIQIIGGVLLIVVGVMLVAGWWNEFVDWIR 258
Query 249 DAFVSDVRLPI 259
+ ++DV LP+
Sbjct 259 MSLITDVELPV 269
>gi|226349454|ref|YP_002776568.1| putative thiol-disulfide oxidoreductase [Rhodococcus opacus B4]
gi|226245369|dbj|BAH55716.1| putative thiol-disulfide oxidoreductase [Rhodococcus opacus B4]
Length=268
Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/259 (59%), Positives = 193/259 (75%), Gaps = 1/259 (0%)
Query 2 TGFTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVD-EQLPAGVVK 60
+ F AA GP+L+A+G LAGL+SFASPC +PLVPGYLSYLA + G + E P G +
Sbjct 10 SSFQTAAATGPMLLALGAAALAGLISFASPCCIPLVPGYLSYLAGITGAETESAPGGAIG 69
Query 61 PPVAARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVF 120
A RWRV G+A LFVAGFT VFVL T +V G + L N+ LL R+GGV+ +VMGL F
Sbjct 70 VRTATRWRVTGAAVLFVAGFTVVFVLATASVFGAISVLQLNRELLGRIGGVVTIVMGLAF 129
Query 121 VGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVAR 180
+G I ALQ+ R PR+++ +AGAP+LGAVF LGWTPCLGPTL GV++VA+ TEGA+ AR
Sbjct 130 LGAIPALQKDTRPHPRRISHLAGAPLLGAVFGLGWTPCLGPTLAGVLSVAAGTEGATAAR 189
Query 181 GIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVW 240
G+ L++AYCLGLG+PF+LL FGS AV G+GWLRRH+R +QI GG L+ VG AL+ G W
Sbjct 190 GVTLIVAYCLGLGLPFILLGFGSTAAVRGVGWLRRHSRTLQILGGLTLVVVGLALLAGAW 249
Query 241 NDVVSWLRDAFVSDVRLPI 259
+ V+W+RD FV+ V LPI
Sbjct 250 DVFVAWIRDEFVTAVVLPI 268
>gi|256380697|ref|YP_003104357.1| cytochrome c biogenesis protein transmembrane protein [Actinosynnema
mirum DSM 43827]
gi|255925000|gb|ACU40511.1| cytochrome c biogenesis protein transmembrane region [Actinosynnema
mirum DSM 43827]
Length=266
Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/257 (61%), Positives = 186/257 (73%), Gaps = 4/257 (1%)
Query 5 TEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPA-GVVKPPV 63
TE+ GPLL+A GV LLAG +SFASPCVVPLVPGYL+YLA +VG D PA G +
Sbjct 12 TELVTSGPLLLATGVALLAGAISFASPCVVPLVPGYLAYLAGLVGADA--PAVGADENRK 69
Query 64 AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGF 123
+ RWRVAG++ LFV GFT VF L + VLG T L N+ LLQR+GGV+ + MGLVF+G
Sbjct 70 SGRWRVAGASLLFVLGFTVVFALTSFVVLGATEVLWLNEDLLQRIGGVVTIAMGLVFIGL 129
Query 124 IGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATE-GASVARGI 182
I ALQR R + GAP+LG VFALGWTPCLGPTL GV+ +A TE G++ RG
Sbjct 130 IPALQRDVRVHRVPRGGLLGAPLLGGVFALGWTPCLGPTLAGVLALARGTEVGSATGRGA 189
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
+LV+AYCLGLG+PFVL+A G+ WAV GWLR H RA+QIFGG+LLI VG ALVTG+W D
Sbjct 190 LLVLAYCLGLGLPFVLIALGTRWAVRMTGWLRTHGRAVQIFGGSLLILVGVALVTGLWGD 249
Query 243 VVSWLRDAFVSDVRLPI 259
V WLR A V+D LP+
Sbjct 250 FVGWLRIAVVNDYELPL 266
>gi|126437055|ref|YP_001072746.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. JLS]
gi|126236855|gb|ABO00256.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium
sp. JLS]
Length=264
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/257 (58%), Positives = 183/257 (72%), Gaps = 5/257 (1%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPV 63
F AA GPL++ +G LAG VSFASPC +PLVPGYLSYLA G + +PP
Sbjct 12 FGAAAASGPLMLGLGAAALAGTVSFASPCCIPLVPGYLSYLAGAAGANGSPD----EPPT 67
Query 64 A-ARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVG 122
A WR AG+A LFVAGFT VFV T +V G+ L N LLQ++GGV+ +VMGLVF+G
Sbjct 68 ARDSWRAAGAALLFVAGFTAVFVAATASVFGLIGALALNSNLLQQIGGVITIVMGLVFIG 127
Query 123 FIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGI 182
I LQR RF PR++T + GAP+LGA F LGWTPCLGPTL GV++VA+ T+G + ARG+
Sbjct 128 SIPMLQRDIRFHPRRVTGIVGAPLLGATFGLGWTPCLGPTLAGVLSVAAGTQGVTAARGV 187
Query 183 VLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWND 242
+L++AYCLGLG+PFVLLA G++ LGWLRR+TR IQ+ GG LLIAVG ALVTG W
Sbjct 188 LLIVAYCLGLGVPFVLLALGTSAMQRWLGWLRRNTRRIQVAGGVLLIAVGIALVTGEWAV 247
Query 243 VVSWLRDAFVSDVRLPI 259
V W+RD FV+ LPI
Sbjct 248 FVGWIRDQFVTTTVLPI 264
>gi|237786455|ref|YP_002907160.1| cytochrome c-type biogenesis protein [Corynebacterium kroppenstedtii
DSM 44385]
gi|237759367|gb|ACR18617.1| cytochrome c-type biogenesis protein [Corynebacterium kroppenstedtii
DSM 44385]
Length=273
Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/256 (58%), Positives = 188/256 (74%), Gaps = 1/256 (0%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPV 63
F + AA GPLL+A+G LAGLVSFASPCV+PLVPGY+SYLA VVG + + A K
Sbjct 19 FADTAASGPLLLALGAAALAGLVSFASPCVIPLVPGYISYLAGVVGAESDITAEGTKVR- 77
Query 64 AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGF 123
+ R RVAG+A LFVAGFT VFVL T ++ G + L N LLQRVGGV+ +VMG+VF+GF
Sbjct 78 SHRGRVAGAALLFVAGFTLVFVLATASIFGAISALQMNNELLQRVGGVVTIVMGVVFLGF 137
Query 124 IGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIV 183
I LQ + R P+ +++ GAP+LGAVFALGWTPCLGPTL G+I++A+ TEG + RG++
Sbjct 138 IPFLQNERRMAPKHWSTLMGAPLLGAVFALGWTPCLGPTLAGIISIAAGTEGTTALRGVI 197
Query 184 LVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDV 243
L+I YCLGLG+PFV++A GS+ A+A + WLRRH+R +QI GG LI VG ALVTG W
Sbjct 198 LIIFYCLGLGLPFVIVALGSSRALASVSWLRRHSRGVQIAGGVALIVVGIALVTGQWAVF 257
Query 244 VSWLRDAFVSDVRLPI 259
VSW+R V+ PI
Sbjct 258 VSWIRQWAVTSTVTPI 273
>gi|296138423|ref|YP_003645666.1| cytochrome C biogenesis protein transmembrane region [Tsukamurella
paurometabola DSM 20162]
gi|296026557|gb|ADG77327.1| cytochrome c biogenesis protein transmembrane region [Tsukamurella
paurometabola DSM 20162]
Length=261
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/260 (57%), Positives = 190/260 (74%), Gaps = 7/260 (2%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPV 63
F + A GPLL+A+ C LAGLVSFASPC+VPLVPGYLSYLA +VG + PA V
Sbjct 5 FADAAVSGPLLIALAACALAGLVSFASPCIVPLVPGYLSYLAGLVGAEA--PAATVDEAK 62
Query 64 ----AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLV 119
A RWRV G++ LFVAGFT VF+L T++V G+ T++ N +L R+GGV+ ++MGL
Sbjct 63 SGARAGRWRVMGASMLFVAGFTAVFLLMTMSVFGLATSIRLNADVLMRIGGVVTIIMGLA 122
Query 120 FVGFIGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVA 179
F+G + L+R RF PRQ T++AGAP+LG VFALGWTPC+GPTL GV++V T+ A A
Sbjct 123 FIGLVPMLERDVRFAPRQWTTLAGAPLLGGVFALGWTPCIGPTLAGVMSVVVGTD-AEPA 181
Query 180 RGIVLVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGV 239
RG +L++AYC GLG+PFV+LA GS AV +GWLRR++R IQIFGG L+IAVG LVTG
Sbjct 182 RGAMLIVAYCAGLGLPFVILALGSTVAVRAVGWLRRNSRRIQIFGGVLMIAVGVLLVTGY 241
Query 240 WNDVVSWLRDAFVSDVRLPI 259
W D+V +R FVS+ +PI
Sbjct 242 WADLVDLVRRLFVSNTVMPI 261
>gi|68536986|ref|YP_251691.1| cytochrome c-type biogenesis protein [Corynebacterium jeikeium
K411]
gi|260579330|ref|ZP_05847212.1| cytochrome c biogenesis protein [Corynebacterium jeikeium ATCC
43734]
gi|68264585|emb|CAI38073.1| cytochrome c-type biogenesis protein [Corynebacterium jeikeium
K411]
gi|258602459|gb|EEW15754.1| cytochrome c biogenesis protein [Corynebacterium jeikeium ATCC
43734]
Length=265
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/236 (59%), Positives = 179/236 (76%), Gaps = 5/236 (2%)
Query 26 VSFASPCVVPLVPGYLSYLAAVVGVDEQLPA--GVVKPPVAARWRVAGSAALFVAGFTTV 83
VSFASPCV+PLVPGY+SYLA VVG + + VVK A R RVA +A LFV GFT V
Sbjct 33 VSFASPCVIPLVPGYISYLAGVVGAETEFTEQGAVVK---AKRGRVATAALLFVLGFTVV 89
Query 84 FVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGFIGALQRQARFTPRQLTSVAG 143
FVL TV V G+ + L NQ LL R+GGV+ + MG+VF+GFI LQR R +P++ T++AG
Sbjct 90 FVLATVTVFGVISALRLNQDLLMRIGGVVTIAMGVVFMGFISPLQRDTRLSPKRWTTIAG 149
Query 144 APVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIVLVIAYCLGLGIPFVLLAFGS 203
AP+LG VFALGWTPCLGPTL +I+V++ T+G + ARG++L++AYCLGLG+PF+++A GS
Sbjct 150 APLLGGVFALGWTPCLGPTLASIISVSAGTQGMTAARGVILIVAYCLGLGLPFIVVALGS 209
Query 204 AWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDVVSWLRDAFVSDVRLPI 259
+ A+ G+GWLR+H+R IQ+ GGALLI VG LVTG W V ++R+ F+SD LPI
Sbjct 210 SKALTGIGWLRKHSRTIQMIGGALLIIVGLLLVTGQWATFVDYIREVFISDKTLPI 265
>gi|145294559|ref|YP_001137380.1| hypothetical protein cgR_0510 [Corynebacterium glutamicum R]
gi|140844479|dbj|BAF53478.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045357|gb|EGV41029.1| cytochrome c biogenesis protein [Corynebacterium glutamicum S9114]
Length=268
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/246 (54%), Positives = 178/246 (73%), Gaps = 1/246 (0%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPV 63
F ++AA GPL + + LAGLVSFASPCVVPLVPGY+SYLA VVG + + A K
Sbjct 14 FADVAASGPLFLGILAAALAGLVSFASPCVVPLVPGYISYLAGVVGGEVEYSAQGTKVK- 72
Query 64 AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGF 123
R+ V G+A LF+ GFT VFVL TV+V G + L N L R+GGV+ ++MG+VF+GF
Sbjct 73 TKRFAVGGAAMLFILGFTVVFVLATVSVFGAISVLTLNADTLMRIGGVVTIIMGIVFMGF 132
Query 124 IGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIV 183
I LQR R P++ T+ GAP+LG VFALGWTPCLGPTL +I++++ TEG + ARG++
Sbjct 133 IPGLQRDTRMAPKRWTTWLGAPLLGGVFALGWTPCLGPTLAAIISISAGTEGMTAARGVI 192
Query 184 LVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDV 243
L++ YCLGLG+PF+L+A GS+ A+ G+ WLR+H+R +QI GG LLI VG AL++G W
Sbjct 193 LIVGYCLGLGLPFLLIALGSSKALTGVEWLRKHSRTLQIIGGVLLILVGVALLSGSWAIF 252
Query 244 VSWLRD 249
++W+R
Sbjct 253 INWVRQ 258
>gi|19551685|ref|NP_599687.1| cytochrome C biogenesis protein [Corynebacterium glutamicum ATCC
13032]
gi|62389340|ref|YP_224742.1| cytochrome c biogenesis protein transmembrane prot [Corynebacterium
glutamicum ATCC 13032]
gi|41324674|emb|CAF19156.1| Cytochrome c biogenesis protein transmembrane prot [Corynebacterium
glutamicum ATCC 13032]
Length=268
Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 131/246 (54%), Positives = 177/246 (72%), Gaps = 1/246 (0%)
Query 4 FTEIAAVGPLLVAVGVCLLAGLVSFASPCVVPLVPGYLSYLAAVVGVDEQLPAGVVKPPV 63
F ++AA GPL + + LAGLVSFASPCVVPLVPGY+SYLA VVG + + A K
Sbjct 14 FADVAASGPLFLGILAAALAGLVSFASPCVVPLVPGYISYLAGVVGGEVEYSAQGTKVK- 72
Query 64 AARWRVAGSAALFVAGFTTVFVLGTVAVLGMTTTLITNQLLLQRVGGVLIVVMGLVFVGF 123
R+ V G+A LF+ GFT VFVL TV+V G + L N L R+GGV+ ++MG+VF+GF
Sbjct 73 TKRFAVGGAAMLFILGFTVVFVLATVSVFGAISVLTLNADTLMRIGGVVTIIMGIVFMGF 132
Query 124 IGALQRQARFTPRQLTSVAGAPVLGAVFALGWTPCLGPTLTGVITVASATEGASVARGIV 183
I LQR R P++ T+ GAP+LG VFALGWTPCLGPTL +I++++ TEG + ARG++
Sbjct 133 IPGLQRDTRMAPKRWTTWLGAPLLGGVFALGWTPCLGPTLAAIISISAGTEGMTAARGVI 192
Query 184 LVIAYCLGLGIPFVLLAFGSAWAVAGLGWLRRHTRAIQIFGGALLIAVGAALVTGVWNDV 243
L++ YCLGLG+PF+L+A GS+ A+ G+ WLR+H+R +QI GG LI VG AL++G W
Sbjct 193 LIVGYCLGLGLPFLLIALGSSKALTGVEWLRKHSRTLQIIGGVFLILVGVALLSGSWAIF 252
Query 244 VSWLRD 249
++W+R
Sbjct 253 INWVRQ 258
Lambda K H
0.328 0.142 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 382276364284
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40