BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0537c
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607677|ref|NP_215051.1| integral membrane protein [Mycobact... 935 0.0
gi|340625564|ref|YP_004744016.1| putative integral membrane prot... 934 0.0
gi|289744249|ref|ZP_06503627.1| integral membrane protein [Mycob... 933 0.0
gi|289756615|ref|ZP_06515993.1| LOW QUALITY PROTEIN: integral me... 849 0.0
gi|289568464|ref|ZP_06448691.1| LOW QUALITY PROTEIN: membrane pr... 802 0.0
gi|289749035|ref|ZP_06508413.1| membrane protein [Mycobacterium ... 751 0.0
gi|167966707|ref|ZP_02548984.1| hypothetical integral membrane p... 564 1e-158
gi|183980904|ref|YP_001849195.1| hypothetical protein MMAR_0883 ... 535 1e-149
gi|118616440|ref|YP_904772.1| hypothetical protein MUL_0636 [Myc... 527 1e-147
gi|240171285|ref|ZP_04749944.1| hypothetical protein MkanA1_1837... 516 4e-144
gi|298524025|ref|ZP_07011434.1| conserved hypothetical protein [... 504 9e-141
gi|342858954|ref|ZP_08715608.1| hypothetical protein MCOL_08758 ... 465 7e-129
gi|296168273|ref|ZP_06850222.1| conserved hypothetical protein [... 435 9e-120
gi|254821847|ref|ZP_05226848.1| hypothetical protein MintA_18077... 427 2e-117
gi|118466261|ref|YP_883737.1| hypothetical protein MAV_4608 [Myc... 420 3e-115
gi|41410131|ref|NP_962967.1| hypothetical protein MAP4033c [Myco... 415 1e-113
gi|333989173|ref|YP_004521787.1| hypothetical protein JDM601_053... 344 2e-92
gi|336460491|gb|EGO39386.1| hypothetical protein MAPs_40072 [Myc... 337 3e-90
gi|167968393|ref|ZP_02550670.1| hypothetical integral membrane p... 333 4e-89
gi|254777043|ref|ZP_05218559.1| hypothetical protein MaviaA2_205... 324 2e-86
gi|126433419|ref|YP_001069110.1| hypothetical protein Mjls_0809 ... 310 2e-82
gi|333991473|ref|YP_004524087.1| hypothetical protein JDM601_283... 274 2e-71
gi|118472057|ref|YP_885581.1| hypothetical protein MSMEG_1189 [M... 267 3e-69
gi|254777042|ref|ZP_05218558.1| hypothetical protein MaviaA2_205... 95.9 1e-17
gi|336460490|gb|EGO39385.1| hypothetical protein MAPs_40071 [Myc... 79.7 1e-12
gi|229489849|ref|ZP_04383706.1| putative membrane protein [Rhodo... 64.3 5e-08
gi|255540285|ref|XP_002511207.1| conserved hypothetical protein ... 45.1 0.027
gi|52079905|ref|YP_078696.1| methylthioribose-1-phosphate isomer... 42.0 0.25
gi|336321362|ref|YP_004601330.1| hypothetical protein Celgi_2262... 37.4 5.8
gi|296132691|ref|YP_003639938.1| protein of unknown function DUF... 37.4 6.4
gi|333920516|ref|YP_004494097.1| hypothetical protein AS9A_2850 ... 37.0 8.0
>gi|15607677|ref|NP_215051.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15839933|ref|NP_334970.1| hypothetical protein MT0562 [Mycobacterium tuberculosis CDC1551]
gi|31791719|ref|NP_854212.1| integral membrane protein [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=477
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/477 (99%), Positives = 477/477 (100%), Gaps = 0/477 (0%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
+GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS
Sbjct 1 MGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
Query 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL
Sbjct 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
Query 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF
Sbjct 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
Query 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG
Sbjct 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
Query 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL
Sbjct 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
Query 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP
Sbjct 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
Query 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL
Sbjct 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
Query 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS
Sbjct 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
>gi|340625564|ref|YP_004744016.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|340003754|emb|CCC42880.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
Length=477
Score = 934 bits (2413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/477 (99%), Positives = 476/477 (99%), Gaps = 0/477 (0%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
+GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS
Sbjct 1 MGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
Query 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL
Sbjct 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
Query 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF
Sbjct 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
Query 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG
Sbjct 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
Query 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRN L
Sbjct 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNSL 300
Query 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP
Sbjct 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
Query 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL
Sbjct 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
Query 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS
Sbjct 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
>gi|289744249|ref|ZP_06503627.1| integral membrane protein [Mycobacterium tuberculosis 02_1987]
gi|294996047|ref|ZP_06801738.1| hypothetical protein Mtub2_16503 [Mycobacterium tuberculosis
210]
gi|298524020|ref|ZP_07011429.1| integral membrane protein [Mycobacterium tuberculosis 94_M4241A]
gi|289684777|gb|EFD52265.1| integral membrane protein [Mycobacterium tuberculosis 02_1987]
gi|298493814|gb|EFI29108.1| integral membrane protein [Mycobacterium tuberculosis 94_M4241A]
gi|326902366|gb|EGE49299.1| membrane protein [Mycobacterium tuberculosis W-148]
gi|339293584|gb|AEJ45695.1| hypothetical protein CCDC5079_0505 [Mycobacterium tuberculosis
CCDC5079]
gi|339297224|gb|AEJ49334.1| hypothetical protein CCDC5180_0497 [Mycobacterium tuberculosis
CCDC5180]
Length=477
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/477 (99%), Positives = 476/477 (99%), Gaps = 0/477 (0%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
+GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS
Sbjct 1 MGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
Query 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL
Sbjct 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
Query 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF
Sbjct 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
Query 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG
Sbjct 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
Query 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDK VWRAASRNGL
Sbjct 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKAVWRAASRNGL 300
Query 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP
Sbjct 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
Query 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL
Sbjct 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
Query 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS
Sbjct 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
>gi|289756615|ref|ZP_06515993.1| LOW QUALITY PROTEIN: integral membrane protein [Mycobacterium
tuberculosis T85]
gi|289712179|gb|EFD76191.1| LOW QUALITY PROTEIN: integral membrane protein [Mycobacterium
tuberculosis T85]
Length=478
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/472 (98%), Positives = 462/472 (98%), Gaps = 0/472 (0%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
+GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS
Sbjct 1 MGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
Query 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL
Sbjct 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
Query 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF
Sbjct 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
Query 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG
Sbjct 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
Query 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDK VWRAASRNGL
Sbjct 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKAVWRAASRNGL 300
Query 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP
Sbjct 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
Query 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL
Sbjct 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGL 420
Query 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRP 472
ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSP G PVRPKIYRP
Sbjct 421 ALSILAAAIVIGRLRQLPQPPHTPALSRPAGSPGFSGQLGRRTPVRPKIYRP 472
>gi|289568464|ref|ZP_06448691.1| LOW QUALITY PROTEIN: membrane protein [Mycobacterium tuberculosis
T17]
gi|289542218|gb|EFD45866.1| LOW QUALITY PROTEIN: membrane protein [Mycobacterium tuberculosis
T17]
Length=429
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/419 (99%), Positives = 414/419 (99%), Gaps = 3/419 (0%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
+GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS
Sbjct 1 MGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
Query 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL
Sbjct 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
Query 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF
Sbjct 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
Query 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG
Sbjct 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
Query 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL
Sbjct 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
Query 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP
Sbjct 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
Query 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCG 419
ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITST CG
Sbjct 361 ARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTLK---CG 416
>gi|289749035|ref|ZP_06508413.1| membrane protein [Mycobacterium tuberculosis T92]
gi|289689622|gb|EFD57051.1| membrane protein [Mycobacterium tuberculosis T92]
Length=433
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/436 (96%), Positives = 421/436 (97%), Gaps = 7/436 (1%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
+GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS
Sbjct 1 MGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
Query 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL
Sbjct 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
Query 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF
Sbjct 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGF 180
Query 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG
Sbjct 181 GKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIG 240
Query 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL
Sbjct 241 REIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGL 300
Query 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP
Sbjct 301 LLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALP 360
Query 361 ARLISSLCGLLCTFTVSRVIV----GVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVV 416
ARLISSLCGLLCTFTVSRVIV G ++ +A G PVYGNDLAQQITSTFDVV
Sbjct 361 ARLISSLCGLLCTFTVSRVIVGRRPGSAISRHLRA---GRLTPVYGNDLAQQITSTFDVV 417
Query 417 LCGLALSILAAAIVIG 432
LCGLALSILAAAIVIG
Sbjct 418 LCGLALSILAAAIVIG 433
>gi|167966707|ref|ZP_02548984.1| hypothetical integral membrane protein [Mycobacterium tuberculosis
H37Ra]
Length=286
Score = 564 bits (1454), Expect = 1e-158, Method: Compositional matrix adjust.
Identities = 285/286 (99%), Positives = 286/286 (100%), Gaps = 0/286 (0%)
Query 192 VVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQ 251
+VYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQ
Sbjct 1 MVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQ 60
Query 252 NTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSV 311
NTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSV
Sbjct 61 NTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSV 120
Query 312 AMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLL 371
AMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLL
Sbjct 121 AMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLL 180
Query 372 CTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI 431
CTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI
Sbjct 181 CTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI 240
Query 432 GRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
GRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS
Sbjct 241 GRLRQLPQPPHTPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 286
>gi|183980904|ref|YP_001849195.1| hypothetical protein MMAR_0883 [Mycobacterium marinum M]
gi|183174230|gb|ACC39340.1| conserved membrane protein [Mycobacterium marinum M]
Length=555
Score = 535 bits (1377), Expect = 1e-149, Method: Compositional matrix adjust.
Identities = 324/531 (62%), Positives = 371/531 (70%), Gaps = 57/531 (10%)
Query 3 LSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLA 62
L+ D RR +VRDL GALL+ A+FFPWNLYFGFRIP SS V +LLAVT LSL ++A
Sbjct 26 LTLDLAHRRNMVRDLTGGALLVLAVFFPWNLYFGFRIPGSSNYVLAVLLAVTLLSLIAIA 85
Query 63 VTFAG------------RRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGP 110
V + G ++LRLGLN+PYLLL+LAFVV+D QTIR GGTV+VPGGVGP
Sbjct 86 VPYVGPWRLSGTRFAPTATNRLRLGLNIPYLLLLLAFVVYDIFQTIRSGGTVNVPGGVGP 145
Query 111 GGWLGITGALLSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYA 170
GGWLGI GA+L AQP TG D ++ WL + LGYASM GAALS+GFNL+WRVRYA
Sbjct 146 GGWLGIAGAMLCAQPVSTGQPGDNENYDNWLFTARILGYASMFGAALSSGFNLAWRVRYA 205
Query 171 LEPAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIA 230
L+P ASGFG+QN+AVIDTA+VYGVVAL AVLVASRWLL+ T L T+ALG S ++A
Sbjct 206 LQPTNSASGFGRQNIAVIDTALVYGVVALVAVLVASRWLLKGTREYQLPTIALGASAMVA 265
Query 231 GSIVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKT 290
G IVW LP+GREIDAFHGIAQNTSTAGVGYEGYLVWAA AA+ AP+ L RS + PI +
Sbjct 266 GIIVWVLPVGREIDAFHGIAQNTSTAGVGYEGYLVWAAGAAIFAPMALVRS-HTHPIGRD 324
Query 291 VWRAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWL 350
+WRAA+RNGLLLIAVWCLGSV MRLTDL AV+LN+P+SRYD+M LAAFDL TA LA WL
Sbjct 325 IWRAAARNGLLLIAVWCLGSVVMRLTDLSTAVMLNFPYSRYDTMTLAAFDLVTAALAFWL 384
Query 351 RFNMATEALPARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQIT 410
R N+ +ALPARLISSLCG L T TVSRVIVGVVLAPRF AS +PVYGN+LAQQIT
Sbjct 385 RINLVNQALPARLISSLCGFLLTLTVSRVIVGVVLAPRFAASPDARPNPVYGNNLAQQIT 444
Query 411 STFDVVLCGLALSILAAAIVIGR------------------------------------L 434
STFDV LCGLAL I+ A I+ GR
Sbjct 445 STFDVTLCGLALGIVVAVIISGRRSATQTKRPGRPRRRQRRTGQPGPARGGAAVPSEAET 504
Query 435 RQLPQPPH--------TPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
Q P T LS P +PRIFRS ST P+ PKIYR PD S
Sbjct 505 TQFRSPAALDAHDDAPTTVLSGPGRAPRIFRSGESTGPLPPKIYRRPDDPS 555
>gi|118616440|ref|YP_904772.1| hypothetical protein MUL_0636 [Mycobacterium ulcerans Agy99]
gi|118568550|gb|ABL03301.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=540
Score = 527 bits (1358), Expect = 1e-147, Method: Compositional matrix adjust.
Identities = 321/531 (61%), Positives = 368/531 (70%), Gaps = 57/531 (10%)
Query 3 LSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLA 62
L+ D RR +VRDL GALL+ A+FFPWNLYFGFRIP SS V +LLAVT LSL ++A
Sbjct 11 LTLDLAHRRNMVRDLTGGALLVLAVFFPWNLYFGFRIPGSSNYVLAVLLAVTLLSLIAIA 70
Query 63 VTFAG------------RRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGP 110
V + G ++LRLGLN+PYLLL+LAFVV+D QTIR GGTV+VPGGVGP
Sbjct 71 VPYVGPWRLSGTRFAPTATNRLRLGLNIPYLLLLLAFVVYDIFQTIRSGGTVNVPGGVGP 130
Query 111 GGWLGITGALLSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYA 170
GGWLGI GA+L AQP TG D ++ WL + LGYASM GAALS+GFNL+WRVRYA
Sbjct 131 GGWLGIAGAMLCAQPVSTGQPGDNENYDNWLFTARILGYASMFGAALSSGFNLAWRVRYA 190
Query 171 LEPAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIA 230
L+P ASGFG+QN+AVIDTA+VYGVVAL AVLVASRWLL+ T L T+ALG S ++A
Sbjct 191 LQPTNSASGFGRQNIAVIDTALVYGVVALVAVLVASRWLLKGTREYQLPTIALGASAMVA 250
Query 231 GSIVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKT 290
G IVW LP+GREIDAFHGIAQNTSTAGVGYEGYLVWA AA+ AP+ L RS + PI +
Sbjct 251 GIIVWVLPVGREIDAFHGIAQNTSTAGVGYEGYLVWATGAAIFAPMALVRS-HTHPIGRD 309
Query 291 VWRAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWL 350
+WRAA+RN LLLIAVWCLGSV MRLTDL AV+LN+P+SRYD+M LAAFDL TA LA WL
Sbjct 310 IWRAAARNELLLIAVWCLGSVVMRLTDLSTAVMLNFPYSRYDTMTLAAFDLVTAALAFWL 369
Query 351 RFNMATEALPARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQIT 410
R N+ +ALPARLISSLCG L T TVSRVIVGVVLAPRF AS +PVYGN+LAQQIT
Sbjct 370 RINLVNQALPARLISSLCGFLLTLTVSRVIVGVVLAPRFAASPDARPNPVYGNNLAQQIT 429
Query 411 STFDVVLCGLALSILAAAIVIGR------------------------------------L 434
STFDV LCGLAL I+ A I+ GR
Sbjct 430 STFDVTLCGLALGIVVAVIISGRRSATQTKQPGRPRRRQRRTGQPGPARGGAAVPSEAET 489
Query 435 RQLPQPPH--------TPALSRPAGSPRIFRSAGSTHPVRPKIYRPPDHSS 477
Q P T LS P +PRIFRS ST P+ PKIYR D S
Sbjct 490 TQFRSPAALDAHDDAPTTVLSGPGRAPRIFRSGESTGPLPPKIYRRLDDPS 540
>gi|240171285|ref|ZP_04749944.1| hypothetical protein MkanA1_18371 [Mycobacterium kansasii ATCC
12478]
Length=505
Score = 516 bits (1329), Expect = 4e-144, Method: Compositional matrix adjust.
Identities = 321/505 (64%), Positives = 362/505 (72%), Gaps = 44/505 (8%)
Query 17 LAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTF-----AGRRSQ 71
+A+ L++ ALFFPWNLYFGFRIP SS+ +FG+LL VT LSL + V GR +
Sbjct 1 MASSVLVVSALFFPWNLYFGFRIPGSSRILFGVLLLVTLLSLTAAVVPHLGKPEPGRAGR 60
Query 72 LRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQPALTGAT 131
LRL LN PYLLLVLAFVV+DA QTIR GGTV+VPGGVGPGGWLG GA+LSAQP++TGA
Sbjct 61 LRLALNTPYLLLVLAFVVYDAFQTIRFGGTVNVPGGVGPGGWLGTAGAVLSAQPSITGAI 120
Query 132 TDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGFGKQNLAVIDTA 191
D+ H WL A + +GYASM GAALS GFNL WRVRYAL PA ASGFGKQN+ VIDTA
Sbjct 121 ADDDKHRNWLLAARIIGYASMFGAALSAGFNLVWRVRYALHPAGAASGFGKQNIVVIDTA 180
Query 192 VVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQ 251
VVYGVVAL AVLVASRW+L+ T LST+ALG S L AG IVW LP+GREIDAFHGIAQ
Sbjct 181 VVYGVVALVAVLVASRWMLKGTEGYRLSTIALGASALAAGVIVWILPVGREIDAFHGIAQ 240
Query 252 NTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSV 311
NTSTAGVGYEG+L WAA AA+ APLTL R P PI K VWRAA+RNGLLLIA WCLGSV
Sbjct 241 NTSTAGVGYEGFLAWAAGAAIFAPLTLVRPPGGRPIAKDVWRAAARNGLLLIAAWCLGSV 300
Query 312 AMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLL 371
MRLTDL AV+L+YP+SRYD+M LA FDL TAVLAIWLR N+ +ALPARLISSL G L
Sbjct 301 VMRLTDLSTAVMLDYPYSRYDTMTLAGFDLVTAVLAIWLRLNLKNDALPARLISSLSGFL 360
Query 372 CTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI 431
+VSRVI+GVVLAPRF G A+PVYGN+LAQQI+S FDV LCGLAL ILAA ++
Sbjct 361 FALSVSRVILGVVLAPRFATPPGAPANPVYGNNLAQQISSVFDVTLCGLALGILAAVLIA 420
Query 432 --------------------------GR----------LRQLPQPPH---TPALSRPAGS 452
GR + P+ H T LS P S
Sbjct 421 RRQRPPRRMRPHPRRPRSGRRRTPPGGRPALPSEAETAQFRTPEAGHDAPTTVLSGPGPS 480
Query 453 PRIFRSAGSTHPVRPKIYRPPDHSS 477
PRIFRSA +T PVRPKIYRPP S
Sbjct 481 PRIFRSAETTGPVRPKIYRPPGDSQ 505
>gi|298524025|ref|ZP_07011434.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298493819|gb|EFI29113.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=260
Score = 504 bits (1299), Expect = 9e-141, Method: Compositional matrix adjust.
Identities = 257/260 (99%), Positives = 258/260 (99%), Gaps = 0/260 (0%)
Query 192 VVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQ 251
+VYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQ
Sbjct 1 MVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQ 60
Query 252 NTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSV 311
NTSTAGVGYEGYLVW AAAAMCAPLTLFRSPNAPPIDK VWRAASRNGLLLIAVWCLGSV
Sbjct 61 NTSTAGVGYEGYLVWGAAAAMCAPLTLFRSPNAPPIDKAVWRAASRNGLLLIAVWCLGSV 120
Query 312 AMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLL 371
AMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLL
Sbjct 121 AMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLL 180
Query 372 CTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI 431
CTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI
Sbjct 181 CTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI 240
Query 432 GRLRQLPQPPHTPALSRPAG 451
GRLRQLPQPPHTPALSRPAG
Sbjct 241 GRLRQLPQPPHTPALSRPAG 260
>gi|342858954|ref|ZP_08715608.1| hypothetical protein MCOL_08758 [Mycobacterium colombiense CECT
3035]
gi|342133195|gb|EGT86398.1| hypothetical protein MCOL_08758 [Mycobacterium colombiense CECT
3035]
Length=570
Score = 465 bits (1197), Expect = 7e-129, Method: Compositional matrix adjust.
Identities = 273/434 (63%), Positives = 318/434 (74%), Gaps = 17/434 (3%)
Query 16 DLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAGRRSQLRLG 75
DL A ALL+ A+F PWNLYFG IP SS +FG+L+A T L++ ++ + + R S R
Sbjct 48 DLTAVALLVLAVFLPWNLYFGIGIPGSSTVLFGVLIAATVLAVLAVGIAGSWRSSGARFN 107
Query 76 ----------LNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQP 125
LNVPYLLLVL FVVFDA +T+R GGTV VPGGVGPG W GI G+LLSAQ
Sbjct 108 PARAARLRLALNVPYLLLVLGFVVFDAYETVRFGGTVTVPGGVGPGAWAGIAGSLLSAQA 167
Query 126 ----ALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGFG 181
AL G + W R+ + +G SML A LS GFNL WRVRYAL+ GA+ FG
Sbjct 168 VPAGALAGPVPAGDESTGWHRSARLIGSLSMLAAVLSFGFNLYWRVRYALQSTGGAAEFG 227
Query 182 KQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGR 241
KQN+AVI TAVVYGVVAL AVLVASRWLLR L+TVALG STL AG +VW LP GR
Sbjct 228 KQNIAVIATAVVYGVVALLAVLVASRWLLRSARESRLATVALGTSTLAAGVLVWFLPAGR 287
Query 242 EIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLL 301
+IDAFHGIAQNTSTAGVG+EGYL WAA AA+ AP LF N P +++ WRA +RNGLL
Sbjct 288 DIDAFHGIAQNTSTAGVGFEGYLAWAAGAALFAPRALFGRRNTSPTEESAWRATTRNGLL 347
Query 302 LIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPA 361
LIAVW +GSVAMR+TDLVV V LNYPFSRY S+ LAAFDLATAVLAIWLR +AT L A
Sbjct 348 LIAVWSVGSVAMRITDLVVGVTLNYPFSRYSSIVLAAFDLATAVLAIWLRRRLAT--LSA 405
Query 362 RLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSA-HPVYGNDLAQQITSTFDVVLCGL 420
R+++SLCGL+ T +V+RV+VG+ LAPRF+ S A HPVYGN+LAQQITSTFDV LCG+
Sbjct 406 RMVTSLCGLVATLSVARVVVGLELAPRFEDSPNSPALHPVYGNNLAQQITSTFDVTLCGV 465
Query 421 ALSILAAAIVIGRL 434
AL IL AAIV G L
Sbjct 466 ALGILVAAIVAGHL 479
>gi|296168273|ref|ZP_06850222.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896792|gb|EFG76424.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=493
Score = 435 bits (1118), Expect = 9e-120, Method: Compositional matrix adjust.
Identities = 283/447 (64%), Positives = 335/447 (75%), Gaps = 15/447 (3%)
Query 2 GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASL 61
G + D RRR VV DL A ALL+ A+F PWNLYFG IP S +F +L+AVT+LSL ++
Sbjct 34 GATGDPARRRHVVSDLIAVALLVVAVFLPWNLYFGVGIPGSRPALFTVLIAVTALSLLAV 93
Query 62 AVTFAGRRS----------QLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPG 111
AV + R ++RL LNVPY LLVLAFV FDA +T+R GGTV+VPGGVGPG
Sbjct 94 AVAGSWRSGGARFNPATAGRVRLWLNVPYALLVLAFVGFDAFETVRFGGTVNVPGGVGPG 153
Query 112 GWLGITGALLSAQPALTGATTD---EG-SHSRWLRATQFLGYASMLGAALSTGFNLSWRV 167
W+GI G +LSAQ GA + EG +H+ WLR+ + +G ASM A LS GFNL WRV
Sbjct 154 AWVGIAGCMLSAQAVAAGARSGPVPEGDAHTGWLRSARLVGVASMALAVLSFGFNLYWRV 213
Query 168 RYALEPAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGST 227
RYAL+ A GA+ FGKQN+AVI TAVVYGVVAL AVLVA RWLLR A L+TVALG ST
Sbjct 214 RYALQNAGGAAEFGKQNVAVIVTAVVYGVVALVAVLVAGRWLLRDARAARLATVALGAST 273
Query 228 LIAGSIVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPI 287
L AG +VWSLP+GR+IDAFHGIAQNTSTAGVG+EGYL WAAAAAM AP TLF N
Sbjct 274 LAAGILVWSLPLGRDIDAFHGIAQNTSTAGVGFEGYLAWAAAAAMVAPRTLFGHRNTTGA 333
Query 288 DKTVWRAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLA 347
+++ WRAA+R GLLLIAVW +GS+ MR+TDL VAV LNYPFSRYD++ LAAFDLATA+LA
Sbjct 334 EESAWRAAARIGLLLIAVWGVGSMLMRMTDLFVAVSLNYPFSRYDTVVLAAFDLATALLA 393
Query 348 IWLRFNMATEALPARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSA-HPVYGNDLA 406
WLR N+ A R+IS++CGL+ T +V+RV+VGVVLAPRF S A HPVYGN+LA
Sbjct 394 AWLRINLGHAARSPRVISTVCGLVATLSVARVVVGVVLAPRFADSPNSPAQHPVYGNNLA 453
Query 407 QQITSTFDVVLCGLALSILAAAIVIGR 433
QQITSTFDV LCGLAL IL AA+V G+
Sbjct 454 QQITSTFDVTLCGLALCILGAAVVAGQ 480
>gi|254821847|ref|ZP_05226848.1| hypothetical protein MintA_18077 [Mycobacterium intracellulare
ATCC 13950]
Length=475
Score = 427 bits (1098), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 267/433 (62%), Positives = 321/433 (75%), Gaps = 13/433 (3%)
Query 9 RRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAGR 68
RRR +V D A LL+ A+F PWNLYFG IP SS+ +F +LL VT L++A++AV + R
Sbjct 44 RRRAIVSDATAVVLLVLAVFLPWNLYFGVGIPGSSQALFAVLLVVTVLAVAAVAVAGSWR 103
Query 69 R----------SQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITG 118
++LRL LN PYLLLVLA + FDA +T+R GGTV VPGGVGPG W+G+ G
Sbjct 104 SGGERFNPASAARLRLALNAPYLLLVLAVIAFDAYETVRFGGTVTVPGGVGPGAWVGVAG 163
Query 119 ALLSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGAS 178
+LLSAQ G + ++ W R+ + +G SML A LS GFNL WRVRYAL+ GA+
Sbjct 164 SLLSAQAVPAGPVPADDEYTGWHRSARTIGALSMLAAVLSFGFNLYWRVRYALQSTNGAA 223
Query 179 GFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLP 238
FGKQN+AVI TAVVYGVVAL AVLVASRWLL+ T A L+TVALG S L AG +VW LP
Sbjct 224 EFGKQNIAVIATAVVYGVVALVAVLVASRWLLQRTRASRLTTVALGASALAAGILVWILP 283
Query 239 IGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRN 298
+GR++DAFHGIAQNTSTAGVG+EGYL WAA AA+ AP LF N P +++ WR+ +RN
Sbjct 284 VGRDLDAFHGIAQNTSTAGVGFEGYLAWAAGAAIFAPRALFGHRNPSPAEESAWRSTTRN 343
Query 299 GLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEA 358
GLLLIAVW +GS+AMRLTDLVV + LNYPFSRYDS+ LAAFDL TA LAIWLR +A
Sbjct 344 GLLLIAVWAVGSIAMRLTDLVVGIALNYPFSRYDSVVLAAFDLVTAALAIWLRRRLA--G 401
Query 359 LPARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSA-HPVYGNDLAQQITSTFDVVL 417
+ ARL++SLCGL+ +++RVIVGV LAPRF S A PVYGNDLAQQITSTFDV L
Sbjct 402 ISARLVTSLCGLVAALSIARVIVGVALAPRFADSPNSPARQPVYGNDLAQQITSTFDVTL 461
Query 418 CGLALSILAAAIV 430
CGLAL ILAAA+V
Sbjct 462 CGLALGILAAAVV 474
>gi|118466261|ref|YP_883737.1| hypothetical protein MAV_4608 [Mycobacterium avium 104]
gi|118167548|gb|ABK68445.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=575
Score = 420 bits (1079), Expect = 3e-115, Method: Compositional matrix adjust.
Identities = 292/517 (57%), Positives = 340/517 (66%), Gaps = 76/517 (14%)
Query 30 PWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAGRRSQLRLG----------LNVP 79
PWNLYFG IPDS+ VF +L+AVT+L+LA+LAV + R R LNVP
Sbjct 64 PWNLYFGVGIPDSNPIVFAVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLALNVP 123
Query 80 YLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQ--PALTGATTDEGSH 137
YLLLVLAFV FDA+QT+R GGTV VPGGVGPG W+GI GALLSAQ PA T A G+
Sbjct 124 YLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGIAGALLSAQAVPAGTAAAPVPGTP 183
Query 138 -----SRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGFGKQNLAVIDTAV 192
+ W RA + +G SML A LS GFNL WRVRYAL+ + GA+ FGK+N+AVI TAV
Sbjct 184 AGDEATGWHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIATAV 243
Query 193 VYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQN 252
VYGVVAL AVLVASRWLLR A L+T+ALG STL AG +VW LP GR++DAFHGIAQN
Sbjct 244 VYGVVALVAVLVASRWLLRSDRASRLTTIALGTSTLAAGILVWLLPAGRDLDAFHGIAQN 303
Query 253 TSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSVA 312
TSTAGVG+EGYL WAA AA+ AP TLF +++ WRA +RNGLLLIAVW LGS+A
Sbjct 304 TSTAGVGFEGYLAWAAGAALFAPRTLFERRTPSHTEESAWRATARNGLLLIAVWALGSMA 363
Query 313 MRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLLC 372
MR+TDL VAV LNYPFSRYDS+ LAAFDL TAVLAIWLR +A L ARL++SLCGL+
Sbjct 364 MRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVLAIWLRRQLAN--LAARLVTSLCGLVA 421
Query 373 TFTVSRVIVGVVLAPRFQASSGGSA-HPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI 431
V+RV+VGV LAPRF + HPVYGN+LAQQITS FDV LCGLAL IL AA+V
Sbjct 422 ALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVVA 481
Query 432 GRL-----------------------RQLP------------------------QPPHT- 443
G+L ++P +PP T
Sbjct 482 GQLGRRRRARRAARRRAAQANAAAPTTRIPVSQGAAPSAAATTRIATGGPGADHEPPTTE 541
Query 444 -PALSRPAGSPRIFRSAGSTH---PV-RPKIYRPPDH 475
P L AGSPRIFR S PV +P+IYRPP
Sbjct 542 IPPL---AGSPRIFRGDDSGTRQIPVPKPQIYRPPQQ 575
>gi|41410131|ref|NP_962967.1| hypothetical protein MAP4033c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398964|gb|AAS06583.1| hypothetical protein MAP_4033c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=575
Score = 415 bits (1066), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 290/517 (57%), Positives = 340/517 (66%), Gaps = 76/517 (14%)
Query 30 PWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAGRRSQLRLG----------LNVP 79
PWNLYFG IPDS+ VF +L+AVT+L+LA+LAV + R R LNVP
Sbjct 64 PWNLYFGVGIPDSNPIVFTVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLALNVP 123
Query 80 YLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQ--PALTGATTDEGSH 137
YLLLVLAFV FDA+QT+R GGTV VPGGVGPG W+GI GALLSAQ PA T A G+
Sbjct 124 YLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGIAGALLSAQAVPAGTAAAPVPGTP 183
Query 138 -----SRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGFGKQNLAVIDTAV 192
+ W RA + +G SML A LS GFNL WRVRYAL+ + GA+ FGK+N+AVI TAV
Sbjct 184 GGDEATGWHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIATAV 243
Query 193 VYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQN 252
VYGVVAL AVLVASRWLLR A L+T+ALG STL AG +VW LP GR++DAFHGIAQN
Sbjct 244 VYGVVALVAVLVASRWLLRSDRASRLTTIALGTSTLGAGILVWLLPAGRDLDAFHGIAQN 303
Query 253 TSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSVA 312
TSTAGVG+EGYL WAA AA+ AP +LF +++ WRA +R+GLLLIAVW LGS+A
Sbjct 304 TSTAGVGFEGYLAWAAGAALFAPRSLFERRTPSHTEESAWRATARSGLLLIAVWALGSMA 363
Query 313 MRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLLC 372
MR+TDL VAV LNYPFSRYDS+ LAAFDL TAVLAIWLR +A L ARL++SLCGL+
Sbjct 364 MRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVLAIWLRRRLAN--LAARLVTSLCGLVA 421
Query 373 TFTVSRVIVGVVLAPRFQASSGGSA-HPVYGNDLAQQITSTFDVVLCGLALSILAAAIVI 431
V+RV+VGV LAPRF + HPVYGN+LAQQITS FDV LCGLAL IL AA+V
Sbjct 422 ALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVVA 481
Query 432 GRL-----------------------RQLP------------------------QPPHT- 443
G+L ++P +PP T
Sbjct 482 GQLGRRRRARRSARRRAAQANAAAPTTRIPVSQGAAPSAAATTRIATGGPGADHEPPTTE 541
Query 444 -PALSRPAGSPRIFRSAGSTH---PV-RPKIYRPPDH 475
P L AGSPRIFR S PV +P+IYRPP
Sbjct 542 IPPL---AGSPRIFRGDDSGTRQIPVPKPQIYRPPQQ 575
>gi|333989173|ref|YP_004521787.1| hypothetical protein JDM601_0532 [Mycobacterium sp. JDM601]
gi|333485140|gb|AEF34532.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=493
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 248/494 (51%), Positives = 307/494 (63%), Gaps = 40/494 (8%)
Query 5 SDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVT 64
++ TRR + RD+ A LL A PW+LYFG IP S + +L A T L+L S+A T
Sbjct 3 AESTRRWNIGRDVTAAVLLCVAPALPWSLYFGAGIPGSDTRLLAVLAAATVLALGSVAAT 62
Query 65 FAGR------------RSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGG 112
+AG +LR L+ PYLLLVL VV D +QTI+ GGT PGGVGPG
Sbjct 63 YAGPWGILGADADPALAGRLRRLLSAPYLLLVLGVVVVDVVQTIQYGGTSRPPGGVGPGA 122
Query 113 WLGITGALLSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALE 172
WLG+ GA+L+ QP L G W R + LG ++ GAALS FNL WRV +A+
Sbjct 123 WLGVAGAVLAGQPVLAGPV------RYWKRGARLLGDVAIAGAALSVLFNLYWRVHFAVP 176
Query 173 PAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGS 232
AS FG+ + A+I TA+VYG VA V +ASRW+LR A L V LGG+ L+AG
Sbjct 177 DVHSASDFGRPHAAIIATALVYGAVAWITVAIASRWILRRDKASQLCVVLLGGAALLAGV 236
Query 233 IVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVW 292
+VW LP+GR ID+FHGIAQNTSTAGVG+EGYLV AAA + R +A W
Sbjct 237 LVWVLPVGRLIDSFHGIAQNTSTAGVGFEGYLV-WVAAAAIFAVAAVRDASA-----ATW 290
Query 293 RAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRF 352
A+RN LLLI +WCLGSV MR+ DLVVAV L P+S YDS A+A+FD+ TAV+AIWLR
Sbjct 291 LGATRNTLLLIIIWCLGSVLMRINDLVVAVSLELPYSPYDSAAMASFDVVTAVVAIWLRI 350
Query 353 NMATEALPARLISSLCGLLCTFTVSRVIVGVVLAPRFQAS--SGGSAHPVYGNDLAQQIT 410
N+A ++PA + S+ +L FT++R++VGV LAPR S + A PVYGN LAQQIT
Sbjct 351 NLANRSIPAAALWSVAAVLFGFTIARIVVGVGLAPRLPDSQRTDAVAQPVYGNGLAQQIT 410
Query 411 STFDVVLCGLALSILAAAIVIGRLRQLPQPPHTPALSRPA----GSPRIFRSAGSTHPVR 466
STFDV+LCGLAL L IV GR PA RP G+PRIFR+ GST VR
Sbjct 411 STFDVMLCGLALCALLVTIVAGRF-------ALPADDRPKPGDPGTPRIFRTTGSTRKVR 463
Query 467 ---PKIYRPPDHSS 477
PKIYR D S+
Sbjct 464 AGGPKIYRGADDSA 477
>gi|336460491|gb|EGO39386.1| hypothetical protein MAPs_40072 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=418
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 233/423 (56%), Positives = 274/423 (65%), Gaps = 66/423 (15%)
Query 114 LGITGALLSAQ--PALTGATTDEGS-----HSRWLRATQFLGYASMLGAALSTGFNLSWR 166
+GI GALLSAQ PA T A G+ + W RA + +G SML A LS GFNL WR
Sbjct 1 MGIAGALLSAQAVPAGTAAAPVPGTPGGDEATGWHRAARIIGALSMLAAVLSFGFNLYWR 60
Query 167 VRYALEPAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGS 226
VRYAL+ + GA+ FGK+N+AVI TAVVYGVVAL AVLVASRWLLR A L+T+ALG S
Sbjct 61 VRYALQSSGGAAQFGKENIAVIATAVVYGVVALVAVLVASRWLLRSDRASRLTTIALGTS 120
Query 227 TLIAGSIVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPP 286
TL AG +VW LP GR++DAFHGIAQNTSTAGVG+EGYL WAA AA+ AP +LF
Sbjct 121 TLGAGILVWLLPAGRDLDAFHGIAQNTSTAGVGFEGYLAWAAGAALFAPRSLFERRTPSH 180
Query 287 IDKTVWRAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVL 346
+++ WRA +R+GLLLIAVW LGS+AMR+TDL VAV LNYPFSRYDS+ LAAFDL TAVL
Sbjct 181 TEESAWRATARSGLLLIAVWALGSMAMRITDLAVAVTLNYPFSRYDSLVLAAFDLVTAVL 240
Query 347 AIWLRFNMATEALPARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSA-HPVYGNDL 405
AIWLR +A L ARL++SLCGL+ V+RV+VGV LAPRF + HPVYGN+L
Sbjct 241 AIWLRRRLAN--LAARLVTSLCGLVAALAVARVVVGVQLAPRFADTPNSPVHHPVYGNNL 298
Query 406 AQQITSTFDVVLCGLALSILAAAIVIGRL-----------------------RQLP---- 438
AQQITS FDV LCGLAL IL AA+V G+L ++P
Sbjct 299 AQQITSVFDVTLCGLALGILVAAVVAGQLGRRRRARRSARRRAAQANAAAPTTRIPVSQG 358
Query 439 --------------------QPPHT--PALSRPAGSPRIFRSAGSTH---PV-RPKIYRP 472
+PP T P L AGSPRIFR S PV +P+IYRP
Sbjct 359 AAPSAAATTRIATGGPGADHEPPTTEIPPL---AGSPRIFRGDDSGTRQIPVPKPQIYRP 415
Query 473 PDH 475
P
Sbjct 416 PQQ 418
>gi|167968393|ref|ZP_02550670.1| hypothetical integral membrane protein [Mycobacterium tuberculosis
H37Ra]
Length=171
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/171 (99%), Positives = 171/171 (100%), Gaps = 0/171 (0%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
+GLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS
Sbjct 1 MGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLAS 60
Query 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL
Sbjct 61 LAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGAL 120
Query 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYAL 171
LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYAL
Sbjct 121 LSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYAL 171
>gi|254777043|ref|ZP_05218559.1| hypothetical protein MaviaA2_20579 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=299
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 196/294 (67%), Positives = 227/294 (78%), Gaps = 3/294 (1%)
Query 140 WLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGFGKQNLAVIDTAVVYGVVAL 199
W RA + +G SML A LS GFNL WRVRYAL+ + GA+ FGK+N+AVI TAVVYGVVAL
Sbjct 8 WHRAARIIGALSMLAAVLSFGFNLYWRVRYALQSSGGAAQFGKENIAVIATAVVYGVVAL 67
Query 200 AAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQNTSTAGVG 259
AVLVASRWLLR A L+T+ALG STL AG +VW LP GR++DAFHGIAQNTSTAGVG
Sbjct 68 VAVLVASRWLLRSDRASRLTTIALGTSTLGAGILVWLLPAGRDLDAFHGIAQNTSTAGVG 127
Query 260 YEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSVAMRLTDLV 319
+EGYL WAA AA+ AP TLF +++ WRA +R+GLLLIAVW LGS+AMR+TDL
Sbjct 128 FEGYLAWAAGAALFAPRTLFERRTPSHTEESAWRATARSGLLLIAVWALGSMAMRITDLA 187
Query 320 VAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLLCTFTVSRV 379
VAV LNYPFSRYDS+ LAAFDL TAVLAIWLR +A L ARL++SLCGL+ V+RV
Sbjct 188 VAVTLNYPFSRYDSLVLAAFDLVTAVLAIWLRRRLAN--LAARLVTSLCGLVAALAVARV 245
Query 380 IVGVVLAPRFQASSGGSA-HPVYGNDLAQQITSTFDVVLCGLALSILAAAIVIG 432
+VGV LAPRF + HPVYGN+LAQQITS FDV LCGLAL IL AA+V G
Sbjct 246 VVGVQLAPRFADTPNSPVHHPVYGNNLAQQITSVFDVTLCGLALGILVAAVVAG 299
>gi|126433419|ref|YP_001069110.1| hypothetical protein Mjls_0809 [Mycobacterium sp. JLS]
gi|126233219|gb|ABN96619.1| hypothetical protein Mjls_0809 [Mycobacterium sp. JLS]
Length=542
Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 207/506 (41%), Positives = 277/506 (55%), Gaps = 45/506 (8%)
Query 4 SSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAV 63
+S R V+RD A L+ A+ PWN+ G I S + GLL+ SLA+L +
Sbjct 11 ASQRLHRANVIRDAVAAVLVTLAVLLPWNIATGITIAGSPGWIMGLLIVAALTSLAALVL 70
Query 64 TFAGR-----------RSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGG 112
T GR ++LR+ LN P L + AF+V+ +Q +R GGT VP G+GPG
Sbjct 71 THVGRGINRDESDLATLNRLRITLNCPMLAMAFAFLVYAVVQAVRAGGTAEVPPGMGPGA 130
Query 113 WLGITGALLSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALE 172
WL + GALL A P + A D+ S S+ A + +G S++ A + FNL WR R+ L
Sbjct 131 WLAVGGALLGAAPVI-AAVGDDRSGSK---ACRIIGVVSLVLAIAAVAFNLYWRTRFVL- 185
Query 173 PAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGS 232
P G + G QNL V AV+Y VVAL V++ SRWL+ L+TV L G+ L+AG
Sbjct 186 PQIGNAETGTQNLVVTVAAVLYAVVALLPVVITSRWLMSTNREAGLATVLLAGAALVAGV 245
Query 233 IVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVW 292
W LP+GR++DAFHGIAQNTSTAGVG+EGYL W A A A +T+ + N +D VW
Sbjct 246 FTWLLPVGRDLDAFHGIAQNTSTAGVGFEGYLAWVAGAGAIATVTVLAALNRNAVD--VW 303
Query 293 RAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRF 352
R+A+R L+LIAVWC GS +R+ DL++A L P Y + L AFDL AV+A+WL
Sbjct 304 RSAARKCLVLIAVWCGGSAVLRIVDLMLASALALPSPPYYATTLMAFDLVAAVVAVWLFL 363
Query 353 NMATEALPARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITST 412
N + +A P L+S G+L V RVIVGV L PR + + VYGN L QQITST
Sbjct 364 NSSGKAAPRMLLSIGYGVLFVLAVCRVIVGVALVPRVPPLNPDAITEVYGNTLGQQITST 423
Query 413 FDVVLCGLALSILAAAIV-----------IGRLRQLPQ---------------PPHTPAL 446
FDV LC L ++++ A V + P+ PP PA+
Sbjct 424 FDVALCVLGVALVVIAFVTSTADRSTGTTVAPKDTAPEPESAPTTTITTYSWAPPVEPAV 483
Query 447 SRPAGSPRIFRSAGSTHPVRPKIYRP 472
S+ + I R A P KI+RP
Sbjct 484 SQAPPTIAIPR-AQEAAPATAKIFRP 508
>gi|333991473|ref|YP_004524087.1| hypothetical protein JDM601_2833 [Mycobacterium sp. JDM601]
gi|333487441|gb|AEF36833.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=499
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 179/403 (45%), Positives = 241/403 (60%), Gaps = 13/403 (3%)
Query 30 PWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAGRRSQLRLGLNVPYLLLVLAFVV 89
PWN++ G I ++ VF +++ T LA+L V S R L VPYL+LV F V
Sbjct 32 PWNVHVGAGIAETRGWVFAIMVIATVPCLAALFVV----ESVPRWALTVPYLILVGVFTV 87
Query 90 FDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQPALTGATTDEGSHSRWLRATQFLGY 149
F + ++R GGT V GVGPG W G+ GALL+AQP AT D+ R R + +G+
Sbjct 88 FAIVISVRYGGTGMVAPGVGPGAWSGLAGALLAAQPRT--ATCDQ---QRVDRTCRLIGW 142
Query 150 ASMLGAALSTGFNLSWRVRYALEPAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWL 209
+S++ A L+T FNL +R R+ + G +G QNLA A++YGVVALA LVA RW+
Sbjct 143 SSIVLAVLATLFNLYFRTRFVIPGIGGDAGI--QNLATAVAALLYGVVALAPALVAGRWV 200
Query 210 LRPTAAEALSTVALGGSTLIAGSIVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAA 269
+ L+ V LGG+ ++AG++VW LP GR +DAFHGIAQNT T VGYEGYL W A
Sbjct 201 MSGRPGPRLAAVLLGGAAVVAGALVWFLPAGRLLDAFHGIAQNTGTVSVGYEGYLAWIAV 260
Query 270 AAMCAPLTLFRSPNAPPIDKTVWRAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFS 329
AA+ L RS A +WR A+R L LI VWC G +R+TD+ +A +L+ P
Sbjct 261 AAIIGTPVL-RSARAAG-SAELWRYATRCCLALITVWCGGKAVLRITDVWLAGVLSLPTP 318
Query 330 RYDSMALAAFDLATAVLAIWLRFNMATEALPARLISSLCGLLCTFTVSRVIVGVVLAPRF 389
Y++ L AFDL TAVLA+WL N + + + G+L TV R+I+GV L PR
Sbjct 319 PYNTTMLMAFDLLTAVLALWLFVNSRNRSASRTVTVVVLGILVVLTVCRLILGVALVPRI 378
Query 390 QASSGGSAHPVYGNDLAQQITSTFDVVLCGLALSILAAAIVIG 432
+ G+ +PV+GN L QQITSTFDV L +AL +L A+ G
Sbjct 379 DPLNPGTVNPVFGNHLVQQITSTFDVTLSFVALLLLTGAVGFG 421
>gi|118472057|ref|YP_885581.1| hypothetical protein MSMEG_1189 [Mycobacterium smegmatis str.
MC2 155]
gi|118173344|gb|ABK74240.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=560
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 185/418 (45%), Positives = 248/418 (60%), Gaps = 18/418 (4%)
Query 10 RREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAG-- 67
R VRD A LL+ AL PWNL FG +P S + F +L VT L+LA+ G
Sbjct 34 RTNRVRDGVAVVLLVLALLLPWNLQFGVGVPGSDGSTFVVLAVVTVLALAAALAPHVGPL 93
Query 68 ----------RRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGIT 117
R +RL L V YL++V+ FV F +QT+R GGT VP GVGPG LG
Sbjct 94 RLAAPKADVRRTGVVRLLLCVAYLVVVIGFVAFHLVQTVRNGGTGAVPPGVGPGLLLGAA 153
Query 118 GALLSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGA 177
GALL+AQP +T T ++ RW TQ +G+ S+ A LS FNL WR+RY
Sbjct 154 GALLAAQPPITSITIEDNKFRRWYTVTQAIGFLSIALATLSVAFNLYWRLRYLF---VTE 210
Query 178 SGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIAGSIVWSL 237
FG ++AVI T V+YG A+ A+++ASRWL TAA L+T A+G S +A ++VW +
Sbjct 211 VAFGSHDVAVIVTTVLYGAEAMTALVIASRWLTEKTAAARLATTAVGVSGAVAATLVWLM 270
Query 238 PIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPIDKTVWRAASR 297
IGR+IDAFHGIA+NTSTA VGYEGYL WA AA+ AP TL+ P +R A+
Sbjct 271 GIGRDIDAFHGIAENTSTAAVGYEGYLAWAVGAAIVAPTTLYAVFLIKPPTLGAYRGAAL 330
Query 298 NGLLLIAVWCLGSVAMRLTDLVVAVLLNYPFSRYDSMALAAFDLATAVLAIWLRFNMATE 357
L LIA W + A+R+ D VA LN P + YDS+A+ F L TA++A W+ ++
Sbjct 331 KCLTLIAFWGFAAAALRIVDYAVAESLNLPRALYDSVAMTVFSLLTAIIARWVHRQISKG 390
Query 358 ALPARLISSLCGLLCTFTVSRVIVGVVLAPRFQASSGGSAHPVYGNDLAQQITSTFDV 415
+ + ++ +L FTV+ V +GV LAPR+ A + + +YGN+LAQQITSTFD+
Sbjct 391 VVSTVVTAAFSAVLFVFTVADVAIGVALAPRYAAPAPDA---IYGNNLAQQITSTFDI 445
>gi|254777042|ref|ZP_05218558.1| hypothetical protein MaviaA2_20574 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=109
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/104 (61%), Positives = 75/104 (73%), Gaps = 10/104 (9%)
Query 31 WNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAGRRSQLRLG----------LNVPY 80
WNLYFG IPDS+ VF +L+A+T+L+LA++AV + R R LNVPY
Sbjct 1 WNLYFGVGIPDSNPIVFAVLVAMTALALAAVAVAGSWRAGGARFDPARAARLRLALNVPY 60
Query 81 LLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQ 124
LLLVLAFV FDA+QT+R GGTV VPGGVGPG W+GI GALLSAQ
Sbjct 61 LLLVLAFVGFDAVQTVRFGGTVDVPGGVGPGAWVGIAGALLSAQ 104
>gi|336460490|gb|EGO39385.1| hypothetical protein MAPs_40071 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=156
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/92 (61%), Positives = 65/92 (71%), Gaps = 10/92 (10%)
Query 30 PWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFAGRRSQLRLG----------LNVP 79
PWNLYFG IPDS+ VF +L+AVT+L+LA+LAV + R R LNVP
Sbjct 64 PWNLYFGVGIPDSNPIVFTVLVAVTALALAALAVAGSWRAGGARFDPARAARLRLALNVP 123
Query 80 YLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPG 111
YLLLVLAFV FDA+QT+R GGTV VPGGVGPG
Sbjct 124 YLLLVLAFVGFDAVQTVRFGGTVDVPGGVGPG 155
>gi|229489849|ref|ZP_04383706.1| putative membrane protein [Rhodococcus erythropolis SK121]
gi|229323359|gb|EEN89123.1| putative membrane protein [Rhodococcus erythropolis SK121]
Length=487
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 119/408 (30%), Positives = 175/408 (43%), Gaps = 59/408 (14%)
Query 7 DTRRREVVRDLAAGALLIGALFFPWNLYFGFRIPDSSKTVFGLLLAVTSLSLASLAVTFA 66
D R + RD A ALL +LF PW+ G SS V L+L + L A
Sbjct 39 DIRIGDYTRDGTAAALLFVSLFLPWSATVGIARVGSSALVLLLVLPTLLSLASLLLPYVA 98
Query 67 -----------GRRSQLRLGLNVPYLLLVLAFVVFDAIQTI---RLGGTVHVPGGVGPGG 112
G+ LRL N P + V+ VV+D I+ + +V GVG G
Sbjct 99 RLGMLGPNWNVGQIRVLRLVANGPLIATVVGLVVYDVIRGMFRFSESSSVFTGNGVGAGA 158
Query 113 WLGITGALLSAQPALTGATTDEGSHSRWLRATQ---FLGYASMLGAA-LSTGFNLSWRVR 168
W G+ GALL+AQP D + RWL + F+ + S + +A L+ + L R
Sbjct 159 WFGLAGALLAAQPRAAEIRIDPRTAPRWLALVKPLVFVAWGSSVASALLALIYILVSVSR 218
Query 169 YALEPAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTL 228
Y G Q + V V + V VA+ L R A+ L T+A G L
Sbjct 219 YRYYD-------GPQTFESLIVLFVSSAVPIVVVGVAAVGLARRFASWRL-TIAALGIAL 270
Query 229 IAGSIVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPNAPPID 288
+A ++ S+ G ++ FH T TA Y + AAAA P + A D
Sbjct 271 LAAGLLHSISEGTSVELFH-----TVTASPYYGITFLIAAAAITFIPFGV-----ASVGD 320
Query 289 KT----VWRAASRNGLLLIAVWCLG----SVAMRLTDLVVAVLLNYPFSRYDSMALAAFD 340
T VW AA+RNG+LLIAVW G +AM T + P+ D++ LA
Sbjct 321 GTHPGYVWLAAARNGMLLIAVWSFGVGFSQIAMAATQFGIV-----PWG--DALVLAVLA 373
Query 341 LATAVLAIW------LRFNMATEALPARLIS-SLCGLLCTFTVSRVIV 381
+ +LA+ LR++ + + P+R + +C L ++R++V
Sbjct 374 ILFGILAVVGVRSLSLRYS-SLDPRPSREVGLGVCVGLLVLMIARLVV 420
>gi|255540285|ref|XP_002511207.1| conserved hypothetical protein [Ricinus communis]
gi|223550322|gb|EEF51809.1| conserved hypothetical protein [Ricinus communis]
Length=880
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/146 (29%), Positives = 63/146 (44%), Gaps = 7/146 (4%)
Query 108 VGPGGWLGITGALLS-AQPALTGATTDEGSHSRWLRATQFLGYASMLG-AALSTGFNLSW 165
V P +L I G LL + L G +T H+ ++ + LG + + LS GF
Sbjct 454 VKPQHFLPIHGELLFLKEHELLGKSTG-VRHTTVIKNGEMLGVSHLRNRKVLSNGFISLG 512
Query 166 RVRYALEPAAGASGFGKQNLAVIDTAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGG 225
+ L G FG ID + +A ++V S +LRP AE+L+ + G
Sbjct 513 KENLQLMYNDGDKAFGTSTELCIDERLR---IATDGIIVISMEILRPQNAESLTANTIKG 569
Query 226 STLIAGSIVWSLPIGREIDAFHGIAQ 251
I +W L G+ +DA H AQ
Sbjct 570 KIRITTRCLW-LDKGKLLDALHKAAQ 594
>gi|52079905|ref|YP_078696.1| methylthioribose-1-phosphate isomerase [Bacillus licheniformis
ATCC 14580]
gi|52785276|ref|YP_091105.1| methylthioribose-1-phosphate isomerase [Bacillus licheniformis
ATCC 14580]
gi|319646277|ref|ZP_08000507.1| YkrS protein [Bacillus sp. BT1B_CT2]
gi|81385790|sp|Q65KK2.1|MTNA_BACLD RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi;
Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate
isomerase
gi|52003116|gb|AAU23058.1| methylthioribose-1-phosphate isomerase [Bacillus licheniformis
ATCC 14580]
gi|52347778|gb|AAU40412.1| YkrS [Bacillus licheniformis ATCC 14580]
gi|317392027|gb|EFV72824.1| YkrS protein [Bacillus sp. BT1B_CT2]
Length=353
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/170 (28%), Positives = 66/170 (39%), Gaps = 26/170 (15%)
Query 70 SQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQPALTG 129
+Q +L YL L ++DAIQT+++ G P +GIT A A A +
Sbjct 22 NQQKLPEKTEYLHLTTKEDIYDAIQTLKVRG--------APA--IGITAAFGLALCAQSI 71
Query 130 ATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEPAAGASGFGKQNLAVID 189
T+D + R LR + L A T NLSW + L+ A GA + ++
Sbjct 72 DTSDVSAFLRELRKIK-----DELNQARPTAVNLSWALNRLLKSAEGAKSVNEAKTNLVH 126
Query 190 TAVVYGVVALAAVLVASRWLLRPTAAEALSTVALGGSTLI---AGSIVWS 236
A+ + V R AL G S + AGSI S
Sbjct 127 EAI--------QIQVEDEETCRQIGQNALHLFKSGDSIMTICNAGSIATS 168
>gi|336321362|ref|YP_004601330.1| hypothetical protein Celgi_2262 [Cellvibrio gilvus ATCC 13127]
gi|336104943|gb|AEI12762.1| hypothetical protein Celgi_2262 [Cellvibrio gilvus ATCC 13127]
Length=694
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/74 (40%), Positives = 36/74 (49%), Gaps = 4/74 (5%)
Query 77 NVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGITGALLSAQP--ALTGATTDE 134
NVP+ LLV + + D + G V GG+GP LG GALL+A P A G
Sbjct 174 NVPFALLVGIYALLDVVFAFD-GDAVEGTGGLGPAVALGFAGALLAASPRAAEVGTAHTA 232
Query 135 GSHSRWLRATQFLG 148
RW+R T LG
Sbjct 233 DQLGRWVR-TALLG 245
>gi|296132691|ref|YP_003639938.1| protein of unknown function DUF39 [Thermincola sp. JR]
gi|296031269|gb|ADG82037.1| protein of unknown function DUF39 [Thermincola potens JR]
Length=398
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/169 (25%), Positives = 66/169 (40%), Gaps = 28/169 (16%)
Query 1 VGLSSDDTRRREVVRDLAAGALLIGALFFPWNLYFGFR--IPDSSKTVFGLLLAVTSLSL 58
+G +D R+++ + + LF P N Y + + S +T++ + V +L
Sbjct 134 IGYGTDCYPRKKIETYITLDDINEAILFNPRNAYQNYNCAVNLSDRTIY-TYMGVLKPNL 192
Query 59 ASLAVTFAGRRSQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHVPGGVGPGGWLGI-- 116
+ AG+ S L LN PY +TI +G + + GG+G W G
Sbjct 193 GNAHYCSAGQLSPL---LNDPYY------------RTIGIGTRIFLGGGIGYVAWHGTQH 237
Query 117 --------TGALLSAQPALTGATTDEGSHSRWLRATQFLGYASMLGAAL 157
G L + + +RWLR T FLGY S L L
Sbjct 238 NPCVPRGENGVPLGGAGTIAVIGDLKQMDARWLRGTSFLGYGSTLTVGL 286
>gi|333920516|ref|YP_004494097.1| hypothetical protein AS9A_2850 [Amycolicicoccus subflavus DQS3-9A1]
gi|333482737|gb|AEF41297.1| Putative membrane protein [Amycolicicoccus subflavus DQS3-9A1]
Length=769
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 106/393 (27%), Positives = 159/393 (41%), Gaps = 56/393 (14%)
Query 10 RREVVRDLAAGALLIGALFFPWNLYFG-FRI---PDSSKTVF-GLLLAVTSLS---LASL 61
R V+ D AA L++ AL PWN R+ PD + ++ LLA+T ++ LA
Sbjct 255 RAHVLCDGAAIVLMLTALLLPWNQELARVRLSVAPDLAAVIWLTTLLAITGVAWPYLAQA 314
Query 62 AVTFAGRR----SQLRLGLNVPYLLLVLAFVVFDAIQTIRLGGTVHV-PGGVGPGGWLGI 116
V A R S R YLL A +V D ++ + + V GVGPG W +
Sbjct 315 GVDAASPRRSAHSMFRTMGVAAYLLTATAVLVVDVVRALLVLVDASVWSKGVGPGVWFAL 374
Query 117 TGALLSA---QPALTGATTDEGSHSRWLRATQFLGYASMLGAALSTGFNLSWRVRYALEP 173
G L+ P + G L Q + +++ LS ++ V +
Sbjct 375 AGGTLAIYWRHPQGVPSRNINGP----LAPMQTVMTCALVLCGLSALLAVTSVVLNSSAG 430
Query 174 AAGASGFGKQNL-AVIDTAVVY--GVVALAAVLVASRWLLRPTAAEALSTVALGGSTLIA 230
AS F +L A++ A V G++ ++ RW P AL+ V+ G+ L A
Sbjct 431 MTAASSFAADSLYAIVGVAAVSLPGIILAMMAVIGMRWDPAPWCV-ALACVS--GAVLFA 487
Query 231 GSIVWSLPIGREIDAFHGIAQNTSTAGVGYEGYLVWAAAAAMCAPLTLFRSPN--APPID 288
G + R GI S++ Y +WA A AM L RSP+
Sbjct 488 GLL-------RASSGSKGIEYFLSSS---YYAMPLWAVAGAMAV-AVLVRSPSVIGEGHR 536
Query 289 KTVWRAASRNGLLLIAVWCLGSVAMRLTDLVVAVLLNYPF-------SRYDSMALAAFDL 341
VW A R L+AVW G R T V+ LL+ + + S LAAF
Sbjct 537 GYVWLVACRYMFALVAVWSFG----RGTLFVLLELLDVGYLLGPGVLTLPQSTVLAAFGF 592
Query 342 ATAVLAI------WLRFNMATEALPARLISSLC 368
AT +LA+ R+ + + P R ++ +C
Sbjct 593 ATGLLAVAGMASLKARYGVGADPRPQRHVAFVC 625
Lambda K H
0.324 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1016040329276
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40