BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0538 Length=548 Score E Sequences producing significant alignments: (Bits) Value gi|15607678|ref|NP_215052.1| hypothetical protein Rv0538 [Mycoba... 1035 0.0 gi|15839934|ref|NP_334971.1| hypothetical protein MT0563 [Mycoba... 1031 0.0 gi|254230881|ref|ZP_04924208.1| hypothetical protein TBCG_00533 ... 1029 0.0 gi|289441924|ref|ZP_06431668.1| conserved membrane protein [Myco... 1028 0.0 gi|289749036|ref|ZP_06508414.1| conserved membrane protein [Myco... 717 0.0 gi|254549493|ref|ZP_05139940.1| hypothetical protein Mtube_03358... 661 0.0 gi|339297225|gb|AEJ49335.1| hypothetical protein CCDC5180_0498 [... 655 0.0 gi|340625565|ref|YP_004744017.1| hypothetical protein MCAN_05411... 652 0.0 gi|289573130|ref|ZP_06453357.1| LOW QUALITY PROTEIN: conserved m... 615 5e-174 gi|339293585|gb|AEJ45696.1| conserved membrane protein [Mycobact... 613 2e-173 gi|298524021|ref|ZP_07011430.1| LOW QUALITY PROTEIN: hypothetica... 578 7e-163 gi|2271518|gb|AAB63811.1| unknown [Mycobacterium bovis] 539 6e-151 gi|289568465|ref|ZP_06448692.1| predicted protein [Mycobacterium... 459 4e-127 gi|167968392|ref|ZP_02550669.1| hypothetical protein MtubH3_1029... 425 1e-116 gi|183980905|ref|YP_001849196.1| hypothetical protein MMAR_0884 ... 379 6e-103 gi|118616441|ref|YP_904773.1| hypothetical protein MUL_0637 [Myc... 378 1e-102 gi|289756616|ref|ZP_06515994.1| predicted protein [Mycobacterium... 364 2e-98 gi|307083030|ref|ZP_07492143.1| hypothetical protein TMLG_03683 ... 300 6e-79 gi|118464734|ref|YP_883735.1| hypothetical protein MAV_4606 [Myc... 294 2e-77 gi|41410132|ref|NP_962968.1| hypothetical protein MAP4034 [Mycob... 293 6e-77 gi|336460489|gb|EGO39384.1| hypothetical protein MAPs_40060 [Myc... 289 9e-76 gi|296168274|ref|ZP_06850223.1| conserved hypothetical protein [... 285 1e-74 gi|254821846|ref|ZP_05226847.1| hypothetical protein MintA_18072... 210 6e-52 gi|254777041|ref|ZP_05218557.1| hypothetical protein MaviaA2_205... 180 7e-43 gi|118472679|ref|YP_885580.1| hypothetical protein MSMEG_1188 [M... 147 7e-33 gi|333991474|ref|YP_004524088.1| FHA domain-containing protein [... 143 7e-32 gi|126433418|ref|YP_001069109.1| FHA domain-containing protein [... 120 5e-25 gi|333989174|ref|YP_004521788.1| hypothetical protein JDM601_053... 105 2e-20 gi|145220894|ref|YP_001131572.1| hypothetical protein Mflv_0290 ... 100 5e-19 gi|315442150|ref|YP_004075029.1| hypothetical protein Mspyr1_048... 100 6e-19 gi|254777040|ref|ZP_05218556.1| hypothetical protein MaviaA2_205... 97.1 7e-18 gi|333988964|ref|YP_004521578.1| hypothetical protein JDM601_032... 97.1 8e-18 gi|120401606|ref|YP_951435.1| hypothetical protein Mvan_0590 [My... 92.4 2e-16 gi|169631374|ref|YP_001705023.1| hypothetical protein MAB_4296c ... 90.1 8e-16 gi|108797411|ref|YP_637608.1| hypothetical protein Mmcs_0431 [My... 86.7 1e-14 gi|126433030|ref|YP_001068721.1| hypothetical protein Mjls_0418 ... 84.0 7e-14 gi|118462913|ref|YP_883951.1| hypothetical protein MAV_4826 [Myc... 75.1 3e-11 gi|296167772|ref|ZP_06849967.1| conserved hypothetical protein [... 74.7 3e-11 gi|296167779|ref|ZP_06849968.1| conserved hypothetical protein [... 74.3 6e-11 gi|336460291|gb|EGO39193.1| hypothetical protein MAPs_42380 [Myc... 73.6 9e-11 gi|333988963|ref|YP_004521577.1| hypothetical protein JDM601_032... 70.1 9e-10 gi|118462565|ref|YP_883949.1| hypothetical protein MAV_4824 [Myc... 68.6 3e-09 gi|41409922|ref|NP_962758.1| hypothetical protein MAP3824 [Mycob... 68.6 3e-09 gi|342859179|ref|ZP_08715833.1| hypothetical protein MCOL_09883 ... 67.8 4e-09 gi|300176444|emb|CBK23755.2| unnamed protein product [Blastocyst... 64.3 5e-08 gi|296167780|ref|ZP_06849969.1| conserved hypothetical protein [... 63.2 1e-07 gi|183980627|ref|YP_001848918.1| hypothetical protein MMAR_0601 ... 61.6 3e-07 gi|254821494|ref|ZP_05226495.1| hypothetical protein MintA_16290... 60.1 9e-07 gi|342859177|ref|ZP_08715831.1| hypothetical protein MCOL_09873 ... 58.2 4e-06 gi|118463376|ref|YP_883950.1| hypothetical protein MAV_4825 [Myc... 57.4 6e-06 >gi|15607678|ref|NP_215052.1| hypothetical protein Rv0538 [Mycobacterium tuberculosis H37Rv] gi|148660307|ref|YP_001281830.1| hypothetical protein MRA_0545 [Mycobacterium tuberculosis H37Ra] gi|306774643|ref|ZP_07412980.1| hypothetical protein TMAG_03543 [Mycobacterium tuberculosis SUMu001] gi|306970747|ref|ZP_07483408.1| hypothetical protein TMJG_02282 [Mycobacterium tuberculosis SUMu010] gi|2114000|emb|CAB08989.1| POSSIBLE CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148504459|gb|ABQ72268.1| putative conserved membrane protein [Mycobacterium tuberculosis H37Ra] gi|308216749|gb|EFO76148.1| hypothetical protein TMAG_03543 [Mycobacterium tuberculosis SUMu001] gi|308359654|gb|EFP48505.1| hypothetical protein TMJG_02282 [Mycobacterium tuberculosis SUMu010] Length=548 Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/548 (100%), Positives = 548/548 (100%), Gaps = 0/548 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV Sbjct 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 Query 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT Sbjct 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 Query 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG Sbjct 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 Query 541 GGDLFGGF 548 GGDLFGGF Sbjct 541 GGDLFGGF 548 >gi|15839934|ref|NP_334971.1| hypothetical protein MT0563 [Mycobacterium tuberculosis CDC1551] gi|31791720|ref|NP_854213.1| hypothetical protein Mb0552 [Mycobacterium bovis AF2122/97] gi|121636456|ref|YP_976679.1| hypothetical protein BCG_0582 [Mycobacterium bovis BCG str. Pasteur 1173P2] 46 more sequence titles Length=548 Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/548 (99%), Positives = 547/548 (99%), Gaps = 0/548 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV Sbjct 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 Query 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT Sbjct 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 Query 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG Sbjct 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 Query 541 GGDLFGGF 548 GGDLFGGF Sbjct 541 GGDLFGGF 548 >gi|254230881|ref|ZP_04924208.1| hypothetical protein TBCG_00533 [Mycobacterium tuberculosis C] gi|124599940|gb|EAY58950.1| hypothetical protein TBCG_00533 [Mycobacterium tuberculosis C] Length=548 Score = 1029 bits (2661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/548 (99%), Positives = 546/548 (99%), Gaps = 0/548 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 RPGTSPGVGGTPASP PEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV Sbjct 361 RPGTSPGVGGTPASPVPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 Query 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT Sbjct 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 Query 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG Sbjct 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 Query 541 GGDLFGGF 548 GGDLFGGF Sbjct 541 GGDLFGGF 548 >gi|289441924|ref|ZP_06431668.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289414843|gb|EFD12083.1| conserved membrane protein [Mycobacterium tuberculosis T46] Length=548 Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/548 (99%), Positives = 546/548 (99%), Gaps = 0/548 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALA GAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALALGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV Sbjct 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV 420 Query 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT Sbjct 421 TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT 480 Query 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG Sbjct 481 TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG 540 Query 541 GGDLFGGF 548 GGDLFGGF Sbjct 541 GGDLFGGF 548 >gi|289749036|ref|ZP_06508414.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289689623|gb|EFD57052.1| conserved membrane protein [Mycobacterium tuberculosis T92] Length=368 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/368 (99%), Positives = 367/368 (99%), Gaps = 0/368 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGV 368 RPGTSPGV Sbjct 361 RPGTSPGV 368 >gi|254549493|ref|ZP_05139940.1| hypothetical protein Mtube_03358 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=532 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/411 (99%), Positives = 410/411 (99%), Gaps = 0/411 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTI 411 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTI Sbjct 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTI 411 >gi|339297225|gb|AEJ49335.1| hypothetical protein CCDC5180_0498 [Mycobacterium tuberculosis CCDC5180] Length=536 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/408 (99%), Positives = 407/408 (99%), Gaps = 0/408 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM 408 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM Sbjct 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM 408 >gi|340625565|ref|YP_004744017.1| hypothetical protein MCAN_05411 [Mycobacterium canettii CIPT 140010059] gi|340003755|emb|CCC42881.1| putative conserved membrane protein [Mycobacterium canettii CIPT 140010059] Length=547 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/408 (99%), Positives = 405/408 (99%), Gaps = 0/408 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAK DELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKVDELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSL AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLSPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP 360 Query 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM 408 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM Sbjct 361 RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM 408 >gi|289573130|ref|ZP_06453357.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium tuberculosis K85] gi|289537561|gb|EFD42139.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium tuberculosis K85] Length=551 Score = 615 bits (1587), Expect = 5e-174, Method: Compositional matrix adjust. Identities = 371/415 (90%), Positives = 372/415 (90%), Gaps = 6/415 (1%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVV- 359 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGT PAV + Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTNPAVTGTLV 360 Query 360 --PRPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPG---WQPGMP 409 G G PASPAPEA P P P P PG W P Sbjct 361 PAAGVPPPGGGWGRPASPAPEAAGRARCCACPGANPGPDHHSPVPGLAAWNADHP 415 >gi|339293585|gb|AEJ45696.1| conserved membrane protein [Mycobacterium tuberculosis CCDC5079] Length=778 Score = 613 bits (1582), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 359/395 (91%), Positives = 362/395 (92%), Gaps = 6/395 (1%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA 300 Query 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIP------A 354 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGT A Sbjct 301 VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTHSGCTERGA 360 Query 355 VQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAP 389 + R G G ++ A PG P P Sbjct 361 AAGYLTRGGWDAGFACAGSAGRARCCACPGANPGP 395 >gi|298524021|ref|ZP_07011430.1| LOW QUALITY PROTEIN: hypothetical protein TBAG_03695 [Mycobacterium tuberculosis 94_M4241A] gi|298493815|gb|EFI29109.1| LOW QUALITY PROTEIN: hypothetical protein TBAG_03695 [Mycobacterium tuberculosis 94_M4241A] Length=295 Score = 578 bits (1491), Expect = 7e-163, Method: Compositional matrix adjust. Identities = 294/295 (99%), Positives = 294/295 (99%), Gaps = 0/295 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ 240 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP AEAGQSGSEGEQ Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPPAEAGQSGSEGEQ 240 Query 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASL 295 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASL Sbjct 241 LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASL 295 >gi|2271518|gb|AAB63811.1| unknown [Mycobacterium bovis] Length=295 Score = 539 bits (1388), Expect = 6e-151, Method: Compositional matrix adjust. Identities = 295/295 (100%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 254 VDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVE 313 VDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVE Sbjct 1 VDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVE 60 Query 314 GHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPA 373 GHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPA Sbjct 61 GHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPA 120 Query 374 SPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPVTTSATTPPTTPPT 433 SPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPVTTSATTPPTTPPT Sbjct 121 SPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPVTTSATTPPTTPPT 180 Query 434 TPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPTTVAPTTVAPATAT 493 TPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPTTVAPTTVAPATAT Sbjct 181 TPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPTTVAPTTVAPATAT 240 Query 494 PTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSGGGDLFGGF 548 PTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSGGGDLFGGF Sbjct 241 PTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSGGGDLFGGF 295 >gi|289568465|ref|ZP_06448692.1| predicted protein [Mycobacterium tuberculosis T17] gi|289542219|gb|EFD45867.1| predicted protein [Mycobacterium tuberculosis T17] Length=260 Score = 459 bits (1182), Expect = 4e-127, Method: Compositional matrix adjust. Identities = 259/260 (99%), Positives = 260/260 (100%), Gaps = 0/260 (0%) Query 289 VIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQ 348 +IGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQ Sbjct 1 MIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQ 60 Query 349 GGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM 408 GGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM Sbjct 61 GGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGM 120 Query 409 PTIPTAPPTTPVTTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVA 468 PTIPTAPPTTPVTTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVA Sbjct 121 PTIPTAPPTTPVTTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVA 180 Query 469 PTTVAPTTVAPTTVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPA 528 PTTVAPTTVAPTTVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPA Sbjct 181 PTTVAPTTVAPTTVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPA 240 Query 529 PQPPSGGRNGSGGGDLFGGF 548 PQPPSGGRNGSGGGDLFGGF Sbjct 241 PQPPSGGRNGSGGGDLFGGF 260 >gi|167968392|ref|ZP_02550669.1| hypothetical protein MtubH3_10294 [Mycobacterium tuberculosis H37Ra] Length=272 Score = 425 bits (1092), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 217/217 (100%), Positives = 217/217 (100%), Gaps = 0/217 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD 180 Query 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPA 217 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPA Sbjct 181 QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPA 217 >gi|183980905|ref|YP_001849196.1| hypothetical protein MMAR_0884 [Mycobacterium marinum M] gi|183174231|gb|ACC39341.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=643 Score = 379 bits (974), Expect = 6e-103, Method: Compositional matrix adjust. Identities = 254/380 (67%), Positives = 288/380 (76%), Gaps = 21/380 (5%) Query 1 MDVALGVAVTDRVARLALVDSAAPGT-VIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDV LGVA+ +ARLALV +AA G+ VIDQ +D+AE PV VLTET+VGT++ LA E H Sbjct 1 MDVVLGVAIAGPIARLALVGAAAEGSAVIDQSSVDLAEGPVAVLTETIVGTNQLLADEGH 60 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETA 119 LVATRLCW DQ +A++L+ AL DSGV DVAV+SE++A TAL+G AHAGSAVLLVG+ETA Sbjct 61 HLVATRLCWSDQDRAEDLRRALDDSGVLDVAVLSESEAVTALLGPAHAGSAVLLVGEETA 120 Query 120 TLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLA 179 +LSV+G DAPPTM+A APV G DATST DTLMA L DQ APG+V LVG S+EHTTV+A Sbjct 121 SLSVLGGGDAPPTMLAAAPVEG-DATSTFDTLMAHLDDQGGAPGEVLLVG-SSEHTTVIA 178 Query 180 DQLRAASTMRVQTPDDPTF--ALARGAAMAAGAATMAHPALVAD---ATTSL-PRAEAGQ 233 DQ R ASTMRV+ P+DPTF A A A +TMA L D ATT L P A Sbjct 179 DQFRDASTMRVEVPEDPTFALARGAAMAAAGAGSTMAQQVLGGDAGEATTYLPPELAATA 238 Query 234 SG-SEGEQLAYSQASDYELLPV---DEYEEH----DEYGAAADRSAP----LSRRSLLIG 281 SG E EQLAYSQA + ELLPV DEY ++ DE+ + AP LS RSLLI Sbjct 239 SGQDEDEQLAYSQAGENELLPVTGADEYGDYGPDDDEFADDYEDEAPAGTRLSSRSLLIS 298 Query 282 NAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPD 341 NAVVAFAVIGFASLAVAVAV IRPTA+S+PVEGHQNAQPGKFMPLLPTQQQAPVPPPPPD Sbjct 299 NAVVAFAVIGFASLAVAVAVAIRPTASSEPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPD 358 Query 342 DPTAGFQGGTIPAVQNVVPR 361 PTAGFQGGTIP VQ VVPR Sbjct 359 APTAGFQGGTIPTVQGVVPR 378 >gi|118616441|ref|YP_904773.1| hypothetical protein MUL_0637 [Mycobacterium ulcerans Agy99] gi|118568551|gb|ABL03302.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=614 Score = 378 bits (971), Expect = 1e-102, Method: Compositional matrix adjust. Identities = 254/383 (67%), Positives = 288/383 (76%), Gaps = 21/383 (5%) Query 1 MDVALGVAVTDRVARLALVDSAAPGT-VIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDV LGVA+ +ARLALV +AA G+ VIDQ +D+AE PV VLTET+VGT++ LA E H Sbjct 14 MDVVLGVAIAGPIARLALVGAAAEGSAVIDQSSVDLAEGPVAVLTETIVGTNQLLADEGH 73 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETA 119 LVATRLCW DQ +A++L+ AL DSGV DVAV+SE++A TAL+G AHAGSAVLLVG+ETA Sbjct 74 HLVATRLCWSDQDRAEDLRRALDDSGVLDVAVLSESEAVTALLGPAHAGSAVLLVGEETA 133 Query 120 TLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLA 179 +LSV+G DAPPTM+A APV G DATST DTLM L D+ APG+V LVG S+EHTTV+A Sbjct 134 SLSVLGGGDAPPTMLAAAPVEG-DATSTFDTLMTHLDDEGGAPGEVLLVG-SSEHTTVIA 191 Query 180 DQLRAASTMRVQTPDDPTF--ALARGAAMAAGAATMAHPALVAD---ATTSL-PRAEAGQ 233 DQ R ASTMRV+ P+DPTF A A A +TMA L D ATT L P A Sbjct 192 DQFRDASTMRVEVPEDPTFALARGAAMAAAGAGSTMAQQVLGGDAGEATTYLPPELAATA 251 Query 234 SG-SEGEQLAYSQASDYELLPV---DEYEEH----DEYGAAADRSAP----LSRRSLLIG 281 SG E EQLAYSQA + ELLPV DEY ++ DE+ + AP LS RSLLI Sbjct 252 SGQDEDEQLAYSQAGENELLPVTGADEYGDYGPDDDEFADDYEDEAPAGTRLSSRSLLIS 311 Query 282 NAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPD 341 NAVVAFAVIGFASLAVAVAV IRPTAAS+PVEGHQNAQPGKFMPLLPTQQQAPVPPPPPD Sbjct 312 NAVVAFAVIGFASLAVAVAVAIRPTAASEPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPD 371 Query 342 DPTAGFQGGTIPAVQNVVPRPGT 364 PTAGFQGGTIP VQ VVPR T Sbjct 372 APTAGFQGGTIPTVQGVVPRQAT 394 >gi|289756616|ref|ZP_06515994.1| predicted protein [Mycobacterium tuberculosis T85] gi|289712180|gb|EFD76192.1| predicted protein [Mycobacterium tuberculosis T85] Length=289 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 256/257 (99%), Positives = 256/257 (99%), Gaps = 0/257 (0%) Query 152 MARLGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAA 211 MARLGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAA Sbjct 1 MARLGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAA 60 Query 212 TMAHPALVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSA 271 TMAHPALVADATTSLP AEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSA Sbjct 61 TMAHPALVADATTSLPPAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSA 120 Query 272 PLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQ 331 PLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQ Sbjct 121 PLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQ 180 Query 332 QAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVP 391 QAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVP Sbjct 181 QAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVP 240 Query 392 IPVPIIIPPFPGWQPGM 408 IPVPIIIPPFPGWQPGM Sbjct 241 IPVPIIIPPFPGWQPGM 257 >gi|307083030|ref|ZP_07492143.1| hypothetical protein TMLG_03683 [Mycobacterium tuberculosis SUMu012] gi|308367255|gb|EFP56106.1| hypothetical protein TMLG_03683 [Mycobacterium tuberculosis SUMu012] Length=153 Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 153/153 (100%), Positives = 153/153 (100%), Gaps = 0/153 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR Sbjct 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT Sbjct 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 Query 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMA 153 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMA Sbjct 121 LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMA 153 >gi|118464734|ref|YP_883735.1| hypothetical protein MAV_4606 [Mycobacterium avium 104] gi|118166021|gb|ABK66918.1| conserved hypothetical protein [Mycobacterium avium 104] Length=556 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 214/394 (55%), Positives = 258/394 (66%), Gaps = 42/394 (10%) Query 1 MDVALGVAVTDRVARLALVDSAAPGT-VIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDV LGVAVT VARLALV S GT VIDQ V+D+A++P+E LTETVVGT+R LAGENH Sbjct 1 MDVVLGVAVTGPVARLALVGSR--GTDVIDQSVVDLADNPIETLTETVVGTNRLLAGENH 58 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETA 119 RLV TRLCW D +AD+L+ AL+DSGVH+VAV+SE+QA AL+ AA A L++ D T Sbjct 59 RLVGTRLCWTDHPRADQLRRALEDSGVHNVAVLSESQAVAALMRAAGQPGAALVMDDATG 118 Query 120 TLSVV----GDPDAPPTMVAVAPVAGA---DATSTVDTLMARLGDQALAPGDVFLVGRSA 172 TLS+V GDPDAPPT++A P+ GA D T+ + T+MA L APG+V+LVG S Sbjct 119 TLSMVSPAAGDPDAPPTLLARQPLGGAVGGDVTAALQTMMANLSANPDAPGEVYLVGASP 178 Query 173 EHTTVLADQLRAASTMRVQTPDDPTFALARGA--------------AMA-----AGAATM 213 + V A+QLR ASTMRVQ DDPTFALARGA AMA G AT Sbjct 179 DLDRV-AEQLRDASTMRVQVADDPTFALARGAAIAAAPALAAGDATAMAPAVGVTGDATA 237 Query 214 AHPA--LVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRS- 270 PA L D TT +P E + + +QLAYS A D + P + E E+ Sbjct 238 MAPAAGLTGDETTVVPAPELAE--PQDQQLAYSMADDAGIYPGEMDEYAPEFDDYDADYD 295 Query 271 -------APLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKF 323 A LSRRSL+IGNAV+AFAVIG ASLA A+AV + PTA+ +PV G QN PGKF Sbjct 296 DAEEAAPAKLSRRSLVIGNAVIAFAVIGLASLATAIAVAVEPTASRQPVVGVQNGTPGKF 355 Query 324 MPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQN 357 MP+LP+QQQAP+PPPP D P AGFQGG + A N Sbjct 356 MPILPSQQQAPLPPPPADAPNAGFQGGVVQAPSN 389 >gi|41410132|ref|NP_962968.1| hypothetical protein MAP4034 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398965|gb|AAS06584.1| hypothetical protein MAP_4034 [Mycobacterium avium subsp. paratuberculosis K-10] Length=559 Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 212/404 (53%), Positives = 257/404 (64%), Gaps = 52/404 (12%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDV LGVAVT VARLALV S VIDQ V+D+A++P+E LTETVVGT+R LAGENHR Sbjct 1 MDVVLGVAVTGPVARLALVGSRGT-DVIDQSVVDLADNPIETLTETVVGTNRLLAGENHR 59 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LV TRLCW D +AD+L+ AL DSGVH+VAV+SE+QA AL+ AA A L++ D T T Sbjct 60 LVGTRLCWTDHPRADQLRRALGDSGVHNVAVLSESQAVAALMRAAGQPGAALVMDDATGT 119 Query 121 LSVV----GDPDAPPTMVAVAPVAGA---DATSTVDTLMARLGDQALAPGDVFLVGRSAE 173 LS+V GDPDAPPT++A P+ GA D T+ + T+MA L APG+V+LVG S + Sbjct 120 LSMVSPAAGDPDAPPTLLARQPLGGAVGGDVTAALQTMMANLSAHPDAPGEVYLVGASPD 179 Query 174 HTTVLADQLRAASTMRVQTPDDPTFAL-----------------------------ARGA 204 V A+QLR ASTMRVQ DDPTFAL A Sbjct 180 LDRV-AEQLRDASTMRVQVADDPTFALARGAAIAAAPALAAGDATAMAPAVGVTGDATAM 238 Query 205 AMAAGAATMAHPA--LVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHD- 261 A AAG AT PA L D TT +P E + + QLAYS A D + P E +E+D Sbjct 239 APAAGDATAMAPAAGLTGDETTVVPAPELAE--PQDRQLAYSMADDAGIYP-GEMDEYDP 295 Query 262 EY------GAAADRSAP--LSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVE 313 E+ + +AP LSRRSL+IGNAV+AFAVIG ASLA A+AV + PTA+ +PV Sbjct 296 EFDDYDADYDDGEEAAPAKLSRRSLVIGNAVIAFAVIGLASLATAIAVAVEPTASRQPVV 355 Query 314 GHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQN 357 G QN PGKFMP+LP+QQQAP+PPPP D P AGFQGG + A N Sbjct 356 GVQNGTPGKFMPILPSQQQAPLPPPPADAPNAGFQGGVVQAPSN 399 >gi|336460489|gb|EGO39384.1| hypothetical protein MAPs_40060 [Mycobacterium avium subsp. paratuberculosis S397] Length=566 Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 236/463 (51%), Positives = 286/463 (62%), Gaps = 68/463 (14%) Query 1 MDVALGVAVTDRVARLALVDSAAPGT-VIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDV LGVAVT VARLALV S GT VIDQ V+D+A++P+E LTETVVGT+R LAGENH Sbjct 1 MDVVLGVAVTGPVARLALVGSR--GTDVIDQSVVDLADNPIETLTETVVGTNRLLAGENH 58 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETA 119 RLV TRLCW D +AD+L+ AL+DSGVH+VAV+SE+QA AL+ AA A L++ D T Sbjct 59 RLVGTRLCWTDHPRADQLRRALEDSGVHNVAVLSESQAVAALMRAAGQPGAALVMDDATG 118 Query 120 TLSVV----GDPDAPPTMVAVAPVAGA---DATSTVDTLMARLGDQALAPGDVFLVGRSA 172 TLS+V GDPDAPPT++A P+ GA D T+ + T+MA L APG+V+LVG S Sbjct 119 TLSMVSPAAGDPDAPPTLLARQPLGGAVGGDVTAALQTMMANLSAHPDAPGEVYLVGASP 178 Query 173 EHTTVLADQLRAASTMRVQTPDDPTFAL-----------------------------ARG 203 + V A+QLR ASTMRVQ DDPTFAL A Sbjct 179 DLDRV-AEQLRDASTMRVQVADDPTFALARGAAIAAAPALAAGDATAMAPAVGVTGDATA 237 Query 204 AAMAAGAATMAHPA--LVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHD 261 A AAG AT PA L D TT +P E + + QLAYS A D + P E +E+D Sbjct 238 MAPAAGDATAMAPAAGLTGDETTVVPAPELAEP--QDRQLAYSMADDAGIYP-GEMDEYD 294 Query 262 -EYGAA------ADRSAP--LSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPV 312 E+ + +AP LSRRSL+IGNAV+AFAVIG ASLA A+AV + PTA+ +PV Sbjct 295 PEFDDYDADYDDGEEAAPAKLSRRSLVIGNAVIAFAVIGLASLATAIAVAVEPTASRQPV 354 Query 313 EGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTP 372 G QN PGKFMP+LP+QQQAP+PPPP D P AGFQGG + A N P P Sbjct 355 VGVQNGTPGKFMPILPSQQQAPLPPPPADAPNAGFQGGVVQAPSNASAPQPAVP----AP 410 Query 373 ASPAPEAPAVPGVVPAPVP--IPVPIIIPPFP--------GWQ 405 A+PAPEAP+ PGVVP P P P P ++ P P GW Sbjct 411 ANPAPEAPSNPGVVPNPNPGWAPNPNLLVPVPIPIPVPIPGWN 453 >gi|296168274|ref|ZP_06850223.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896793|gb|EFG76425.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=565 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 205/384 (54%), Positives = 249/384 (65%), Gaps = 36/384 (9%) Query 1 MDVALGVAVTDRVARLALVDSAAPGT-VIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDV LGVAVT VARLALV A G VIDQ V+D+ ++PV LTETVVGT+R LA ENH Sbjct 1 MDVVLGVAVTGPVARLALVGPGARGADVIDQSVVDLQDNPVGKLTETVVGTNRLLADENH 60 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETA 119 RLV TR+CW D +A +L+ AL+ SGV +VAV+ E+QA AL+ AA A L++ TA Sbjct 61 RLVGTRVCWNDDLRAGQLRQALETSGVSNVAVLPESQAVAALMRAAGRPGAALVMDGATA 120 Query 120 TLSVVG---DPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTT 176 TLSV G D +APPT++A P+AG DAT+T +T+MA+LG + APGDV+LVG S E Sbjct 121 TLSVPGSADDQNAPPTVLAGEPLAGGDATATFNTMMAQLGARPDAPGDVYLVGASPELAQ 180 Query 177 VLADQLRAASTMRVQTPDDPTF----------------------ALARGAAMAAGAATMA 214 V ADQLR ASTMRV+ DP F ALA + MA Sbjct 181 V-ADQLREASTMRVEVAADPAFAVARGAAIAAAPATVLAAGDATALAPAVGLTGDETAMA 239 Query 215 HPALVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEY----EEHDEYGAAADRS 270 L D TT +P +A + QLAYS A D E EY +E+D+ Sbjct 240 PAGLTGDETTVVPPPDAQEP-----QLAYSMADDAEPFAGGEYGPGFDEYDDADGTEAIP 294 Query 271 APLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQ 330 + LSRRSL++GNAV+AFAVIGFASLA A+A+ +RPTA+ +PV GHQNA PGKFMPLLPTQ Sbjct 295 SRLSRRSLVVGNAVIAFAVIGFASLAAAIAIAVRPTASQQPVVGHQNAAPGKFMPLLPTQ 354 Query 331 QQAPVPPPPPDDPTAGFQGGTIPA 354 QQAPVPPPP D P AGFQGGT+PA Sbjct 355 QQAPVPPPPVDQPNAGFQGGTVPA 378 >gi|254821846|ref|ZP_05226847.1| hypothetical protein MintA_18072 [Mycobacterium intracellulare ATCC 13950] Length=207 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 124/208 (60%), Positives = 154/208 (75%), Gaps = 9/208 (4%) Query 1 MDVALGVAVTDRVARLALVDSAAPGT-VIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDV LGVAVT VARLAL+ S A G VIDQ V+D+A++P+ LTETVVGT+R LA ENH Sbjct 1 MDVVLGVAVTGPVARLALLGSGAQGADVIDQSVVDLADNPLGTLTETVVGTNRLLADENH 60 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETA 119 RLV TRLCW D+ +AD+L+ AL+DSGVH+VAV+SE+QA +L+ AA A L++ D TA Sbjct 61 RLVGTRLCWSDEPRADQLRRALEDSGVHNVAVLSESQAVASLMRAAGRPGAALVMDDATA 120 Query 120 TLSVV----GDPDAPPTMVAVAPVAGA---DATSTVDTLMARLGDQALAPGDVFLVGRSA 172 TLSVV GDPDAPPT++A P+ GA DAT+ T+MA LG APG+V+L+G S Sbjct 121 TLSVVGPDAGDPDAPPTVLASQPLTGATGPDATAAFQTMMANLGTHPDAPGEVYLLGASP 180 Query 173 EHTTVLADQLRAASTMRVQTPDDPTFAL 200 + V AD+LR ASTMRVQ +DPTFAL Sbjct 181 DLNRV-ADELRDASTMRVQVAEDPTFAL 207 >gi|254777041|ref|ZP_05218557.1| hypothetical protein MaviaA2_20569 [Mycobacterium avium subsp. avium ATCC 25291] Length=175 Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 104/176 (60%), Positives = 129/176 (74%), Gaps = 8/176 (4%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDV LGVAVT VARLALV S VIDQ V+D+A++P+E LTETVVGT+R LAGENHR Sbjct 1 MDVVLGVAVTGPVARLALVGSRGT-DVIDQSVVDLADNPIETLTETVVGTNRLLAGENHR 59 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT 120 LV TRLCW D +AD+L+ AL+DSGVH+VAV+SE+QA AL+ AA A L++ D T T Sbjct 60 LVGTRLCWTDHPRADQLRRALEDSGVHNVAVLSESQAVAALMRAAGQPGAALVMDDATGT 119 Query 121 LSVV----GDPDAPPTMVAVAPVAGA---DATSTVDTLMARLGDQALAPGDVFLVG 169 LS+V GDPDAPPT++A P+ GA D T+ + T+MA L APG+V+LVG Sbjct 120 LSMVSPAAGDPDAPPTLLARQPLGGAVGGDVTAALQTMMANLSAHPDAPGEVYLVG 175 >gi|118472679|ref|YP_885580.1| hypothetical protein MSMEG_1188 [Mycobacterium smegmatis str. MC2 155] gi|118173966|gb|ABK74862.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=635 Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 140/396 (36%), Positives = 217/396 (55%), Gaps = 73/396 (18%) Query 1 MDVALGVAVTDRVARLALVDS-AAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDV LGVAVT RVARLA++ + A G ++DQ+ LD+++ + L ET++GT +++ + Sbjct 1 MDVVLGVAVTGRVARLAMIGAPANGGQLLDQYALDLSDDGLAELAETIIGTYQAVTESGN 60 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETA 119 ++ ATRLC PD A+AD L+ + ++GV +V V++EA+AA AL +A A +A+L+ D+TA Sbjct 61 QVAATRLCLPDPAEADTLRMTVANAGVPNVDVVAEAEAAAALARSAGADAALLVADDDTA 120 Query 120 TLSVVGD-PDAPPT-MVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTV 177 +L+V+G+ P+ P T +A P+ A + T++ + + AP V LVG+ + +V Sbjct 121 SLTVIGEAPEGPSTSTLASVPIGTAGVAAACATVLQQAAGE--APTRVMLVGQRLDLDSV 178 Query 178 LADQLRAASTMRVQTPDDPTFALARGAAMA------AGAATMAHPALVA----------- 220 A +LR S V+ P D FA+ARGAA + AGAAT PAL A Sbjct 179 AA-ELR--SMAPVEVPPDAGFAIARGAAQSAEGFAPAGAATQMAPALDATQMAPAATDAT 235 Query 221 ------DATTSLPRAEAGQ--------------------------SGSEGEQLAYSQA-- 246 DAT P A+A Q +G G +LAYSQ Sbjct 236 QLAPSVDATQLAPAADATQPAPAAADATQMAPAASDATVATPTDAAGQVGPELAYSQEPE 295 Query 247 ----SDYELLPVD---EY--EEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAV 297 ++Y+ +P+D E+ E+ +E G AP R LL+G+A+ F + FA+LAV Sbjct 296 AEPWAEYDEMPMDPLSEFVPEQAEEAGYTT-VIAPPPPRMLLVGSALT-FVAVSFATLAV 353 Query 298 AVAVTIRPTA--ASKPVEGHQ-NAQPGKFMPLLPTQ 330 VA+ +RP A ++PV Q + PG+++P +P + Sbjct 354 TVAINVRPAADVRAQPVTPTQSDTVPGRYLPPVPHE 389 >gi|333991474|ref|YP_004524088.1| FHA domain-containing protein [Mycobacterium sp. JDM601] gi|333487442|gb|AEF36834.1| FHA domain-containing protein [Mycobacterium sp. JDM601] Length=857 Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 121/353 (35%), Positives = 176/353 (50%), Gaps = 40/353 (11%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDV+LG+ +T AR+ L D+A P VIDQ +++ + ++L T+V TDR L H Sbjct 1 MDVSLGIRLTAADARIVLADAAPPHPVIDQSRVELTDG--DILVSTLVSTDRMLTETGHH 58 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVIS--EAQAATALVGAAHAGSAVLLVGDET 118 LVATR+C D + L AL+D+ + +V V+S A A AL A +A+L V +T Sbjct 59 LVATRICGDDAERIGHLVDALRDADLMNVTVVSPPAAATAAALGLAGGETAAILSVEGDT 118 Query 119 ATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVL 178 A LS+V +++AVA + G D + L+ RL ++ PG V L Sbjct 119 AALSIVDAATDTNSLIAVATIDGDDRAAAYRELLDRLAEE---PGGATSVLMLDPADAAL 175 Query 179 ADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEG 238 +L AAS + V P++ FALARGAAMA +A P +DA G Sbjct 176 NAELTAASPVPVHYPEEAEFALARGAAMAGATDAVAAPPNGSDAP--------------G 221 Query 239 EQLAYSQASDYE-----------------LLPVDEYEEHDEYGAAADRSAPLSRRSLLIG 281 +QLAYS+ +D L +D E D GAA P R LL+G Sbjct 222 QQLAYSEVADDTGSWPPADAAPMQTPLEPLSAIDPDEVDDADGAATPE--PARPRVLLVG 279 Query 282 NAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAP 334 + + V+GFA+LAV+VA+ IRPT + + + + PG ++P+ P Q P Sbjct 280 STIAGIVVVGFAALAVSVAIGIRPTVSQQALRVQDLSVPGDYLPVTPGQGVKP 332 >gi|126433418|ref|YP_001069109.1| FHA domain-containing protein [Mycobacterium sp. JLS] gi|126233218|gb|ABN96618.1| FHA domain containing protein [Mycobacterium sp. JLS] Length=793 Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 117/356 (33%), Positives = 176/356 (50%), Gaps = 29/356 (8%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR 60 MDV LGV + AR+AL+D+ AP VIDQ +D++ PV+ + + TDR L HR Sbjct 1 MDVTLGVVLDKAEARIALLDATAPHAVIDQSAIDLSNQPVDAVVSALASTDRMLTESGHR 60 Query 61 LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAG--SAVLLVGDET 118 LV T +C D A ++ AL D+ + +V V+S + A T + + G +A L +T Sbjct 61 LVGTSVCSADPDTAAGVRDALIDADLTNVTVVSRSDAVTEVTRSLVGGDTTATLTSDADT 120 Query 119 ATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVL 178 A L++V +++AV PV G D + TL+ R G++ V ++G + L Sbjct 121 AALTIVDAAADTTSLIAVEPVTGGDRGAAYRTLLERFGEEPGGATSVIVLGAPVDDA--L 178 Query 179 ADQLRAASTMRVQTPDDPTFALARGAAMAAG---AATMAHPALVADATTSLPRAEAGQSG 235 L+A S + +Q DDP A+ARGAA+A ++A AL+ S+ + S Sbjct 179 TADLQAVSPVPLQFVDDPESAIARGAALAGTRRPGNSVAGQALI----DSMNWGDTMLS- 233 Query 236 SEGEQLAYSQASDYE-----------------LLPVDEYEEHDEYGAAADRSAPLSRRSL 278 + +QLAYSQ D E L VD + E A + R+L Sbjct 234 PQAQQLAYSQVDDAEDFGIADAAVPMQTPMRPLSAVDSQDYEVEESAEEAAAPADRPRAL 293 Query 279 LIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAP 334 L+G+ V A V+GFA+LAV VA+ IRP + V ++ GK+ P+ P Q P Sbjct 294 LLGSTVAAVVVVGFAALAVTVALNIRPDVREQAVRLTDDSLAGKYFPVAPGQGVTP 349 >gi|333989174|ref|YP_004521788.1| hypothetical protein JDM601_0534 [Mycobacterium sp. JDM601] gi|333485142|gb|AEF34534.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=678 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/102 (56%), Positives = 73/102 (72%), Gaps = 1/102 (0%) Query 1 MDVALGVAVTDRVARLALVDSAAPG-TVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENH 59 MDVALGV+VT +ARLALV+S A G V+D+ +LD+ + PV L ETV GT R LA E H Sbjct 1 MDVALGVSVTGALARLALVESDAYGDAVLDESMLDLTQDPVATLAETVTGTHRVLAEEGH 60 Query 60 RLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL 101 RL ATRLCW D A EL+ AL ++GV +V+ S+A++A AL Sbjct 61 RLAATRLCWSDAALLAELRRALDEAGVENVSEQSQARSAVAL 102 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/120 (44%), Positives = 60/120 (50%), Gaps = 27/120 (22%) Query 207 AAGAATMAHPALVADATTSLPRAEAGQSGSEGEQLAYSQASD-YELLPVDEYE-EHDEYG 264 A GAAT A PA+ G +QLAYS D ELLPV+ E E D YG Sbjct 147 AGGAATTAEPAIAG--------------GEPEQQLAYSMTDDDSELLPVEYAEGEGDGYG 192 Query 265 A--AADRSA---------PLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVE 313 A D S P R+LLIG++V V G A+LAVAV V IRPTAA+ VE Sbjct 193 DYDAYDESGGGDEPEVLPPPVGRALLIGSSVGGILVAGCAALAVAVTVGIRPTAAATQVE 252 >gi|145220894|ref|YP_001131572.1| hypothetical protein Mflv_0290 [Mycobacterium gilvum PYR-GCK] gi|145213380|gb|ABP42784.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=553 Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 113/357 (32%), Positives = 174/357 (49%), Gaps = 23/357 (6%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQ--FVLDVAE---HPVEVLTETVVGTDRSL 54 MD+ LGV++T R+ LV+ A G +D F +D E + E + V+GT S Sbjct 1 MDIVLGVSMTPTTVRMVLVEGEKADGVTVDHDTFAVDSVEGSANAAEHVVSAVLGTRESA 60 Query 55 AGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAGS 109 H L + + W D A+A L+ AL G+ DV ++SE+ AA +L VG A + + Sbjct 61 ETGGHHLKSIGVTWSDHAEATALRDALAAHGIDDVMLVSESHAAASLAQAVGRAVDYDTT 120 Query 110 AVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLG--DQALAPGDVFL 167 A+L V +TATLSVV D V + ADA + + + A + Q P +F+ Sbjct 121 ALLFVDRDTATLSVVKTDDGSVVKVLSRSLHSADAMAVLAEMAAAIDTRTQDAPPQGIFV 180 Query 168 VGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP 227 VG + ++V D L+ + + PDD ALARGAA+A+ +A V A + P Sbjct 181 VGSGVDISSV-KDHLKHLVAVPIHAPDDAELALARGAALASASAPAFEATTVGLAYSQDP 239 Query 228 RAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRR-SLLIGNAVVA 286 + +GS LA +Q ++ PV DE+ R R+ LL+G+A+ + Sbjct 240 --DGTTAGSVFAGLAGAQT---QMAPVGGDVPVDEFAPTEMRPVDEERKPFLLVGSALTS 294 Query 287 FAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPL---LPTQQQAPVPPPPP 340 V+G +L +++A++IRPTA +P P P P +Q+A PPPP Sbjct 295 LFVVGVVALVISLAISIRPTADQRPSPAQAAIVPSSQAPTAEPAPARQEAAQIPPPP 351 >gi|315442150|ref|YP_004075029.1| hypothetical protein Mspyr1_04840 [Mycobacterium sp. Spyr1] gi|315260453|gb|ADT97194.1| hypothetical protein Mspyr1_04840 [Mycobacterium sp. Spyr1] Length=541 Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 113/357 (32%), Positives = 174/357 (49%), Gaps = 23/357 (6%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQ--FVLDVAE---HPVEVLTETVVGTDRSL 54 MD+ LGV++T R+ LV+ A G +D F +D E + E + V+GT S Sbjct 1 MDIVLGVSMTPTTVRMVLVEGEKADGVTVDHDTFAVDSVEGSANAAEHVVSAVLGTRESA 60 Query 55 AGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAGS 109 H L + + W D A+A L+ AL G+ DV ++SE+ AA +L VG A + + Sbjct 61 ETGGHHLKSIGVTWSDHAEATALRDALAAHGIDDVMLVSESHAAASLAQAVGRAVDYDTT 120 Query 110 AVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLG--DQALAPGDVFL 167 A+L V +TATLSVV D V + ADA + + + A + Q P +F+ Sbjct 121 ALLFVDRDTATLSVVKTDDGSVVKVLSRSLHSADAMAVLAEMAAAIDTRTQDAPPQGIFV 180 Query 168 VGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP 227 VG + ++V D L+ + + PDD ALARGAA+A+ +A V A + P Sbjct 181 VGSGVDISSV-KDHLKHLVAVPIHAPDDAELALARGAALASASAPAFEATTVGLAYSQDP 239 Query 228 RAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRR-SLLIGNAVVA 286 + +GS LA +Q ++ PV DE+ R R+ LL+G+A+ + Sbjct 240 --DGTTAGSVFAGLAGAQT---QMAPVGGDVPVDEFAPTEMRPVDEERKPFLLVGSALTS 294 Query 287 FAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPL---LPTQQQAPVPPPPP 340 V+G +L +++A++IRPTA +P P P P +Q+A PPPP Sbjct 295 LFVVGVVALVISLAISIRPTADQRPSPAQAAIVPSSQAPTAEPAPARQEAAQIPPPP 351 >gi|254777040|ref|ZP_05218556.1| hypothetical protein MaviaA2_20564 [Mycobacterium avium subsp. avium ATCC 25291] Length=295 Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/128 (57%), Positives = 87/128 (68%), Gaps = 10/128 (7%) Query 239 EQLAYSQASDYELLPVDEYEEHD-EYGAAADRS--------APLSRRSLLIGNAVVAFAV 289 +QLAYS A D + P E +E+D E+ A LSRRSL+IGNAV+AFAV Sbjct 2 QQLAYSMADDAGIYP-GEMDEYDPEFDDYDADYDDAEEAAPAKLSRRSLVIGNAVIAFAV 60 Query 290 IGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQG 349 IG ASLA A+AV + PTA+ +PV G QN PGKFMP+LP+QQQAP+PPPP D P AGFQG Sbjct 61 IGLASLATAIAVAVEPTASRQPVVGVQNGTPGKFMPILPSQQQAPLPPPPADAPNAGFQG 120 Query 350 GTIPAVQN 357 G + A N Sbjct 121 GVVQAPSN 128 >gi|333988964|ref|YP_004521578.1| hypothetical protein JDM601_0324 [Mycobacterium sp. JDM601] gi|333484932|gb|AEF34324.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=575 Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 119/387 (31%), Positives = 183/387 (48%), Gaps = 68/387 (17%) Query 1 MDVALGVAVTDRVARLALVDSAAPGTVI---DQFVLDVA--EHPVEVLTETVVGTDRSLA 55 MD+ LGV+ R+ LV+ G V D F +D A P +V++ ++GT S Sbjct 1 MDIVLGVSTAPPSVRMVLVEGENAGGVTVDEDGFEVDTAGAAFPDQVVS-AILGTQESAQ 59 Query 56 GENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEA-------QAATALVGAAHAG 108 +RL +T + DQ +A +L+ AL D V +V ++S Q +G + Sbjct 60 QGGYRLASTGVTVADQVQAGQLRDALADRRVENVMLVSAFLAAAALAQTVGGTIG--YER 117 Query 109 SAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGAD--ATSTVDTLMARLGDQALAPGDVF 166 +A++ + + ATL+VV D T V+ + D A + + L A+ G P +F Sbjct 118 TALMFIEPQGATLAVVDSTDGSITEVSRVALPPDDDAALAELTALAAQAGRLESRPDGLF 177 Query 167 LVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSL 226 +VG S + ++ +L A S + V P++P ALARGAA+A+ AH L +T++L Sbjct 178 VVG-SGVNVGLVKPELDAVSAIPVSVPEEPDTALARGAALAS-----AHAPLFDSSTSAL 231 Query 227 PRAEAGQSGSEGEQL---AYSQASDYEL-----------LPVDEYEEHDEYGAA------ 266 A +G L AY+Q +DY+ +P D + +G A Sbjct 232 AWARDPGTGVIDPNLVALAYAQQADYDATIGEYALAYSAIPEDADSGYLAFGDAENTANV 291 Query 267 --------------ADRSAPLSRRS--LLIGNAVVAFAVIGFASLAVAVAVTIRPTAASK 310 AD P RR+ LL G+ + AF V+G ASL VA+AV+IRPTA+ Sbjct 292 IAADYHPPSSGVRRADELEPARRRNPFLLAGSGLAAFFVVGVASLLVALAVSIRPTASEH 351 Query 311 PVEGHQNAQPGKFMPLLPTQQ-QAPVP 336 P P + + ++PTQQ QAPVP Sbjct 352 PA-------PSQHI-VVPTQQAQAPVP 370 >gi|120401606|ref|YP_951435.1| hypothetical protein Mvan_0590 [Mycobacterium vanbaalenii PYR-1] gi|119954424|gb|ABM11429.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=543 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 103/313 (33%), Positives = 152/313 (49%), Gaps = 26/313 (8%) Query 15 RLALVD-SAAPGTVIDQFVL---------DVAEHPVEVLTETVVGTDRSLAGENHRLVAT 64 R+ LV+ A G +D V +VAEH V + GT S H L + Sbjct 7 RMVLVEGEKADGVTVDHDVFHVDSADGSANVAEHVVSAIQ----GTKESAETGGHHLRSI 62 Query 65 RLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAGSAVLLVGDETA 119 + W D +A L+ AL G+ DV ++SE AA +L VG A + +A+L V +TA Sbjct 63 GVTWSDHTEATALRDALATHGIDDVMLVSEGHAAASLAQAVGRAVGYDTTALLFVDRDTA 122 Query 120 TLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLA 179 TLSVV D V + ADA + + + + Q P +F+VG + ++V A Sbjct 123 TLSVVQTDDGSVVKVLSRSLHSADAMAVLTEMAEAVAAQEAPPQGMFVVGSGVDISSVKA 182 Query 180 DQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGE 239 L ++ V PDD ALARGAA+A+ AA V A + P + +GS Sbjct 183 -HLEHLVSLPVSAPDDAELALARGAALASAAAPAFEATTVGLAYSQDP--DGTTAGSVYA 239 Query 240 QLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRR-SLLIGNAVVAFAVIGFASLAVA 298 LA +D +L PV + DE+ R R+ LL+G+A+ + VIG A+L V+ Sbjct 240 GLA---GADTQLAPVGAEDVVDEFAPTEMRPVDEGRKPFLLVGSALTSLFVIGVAALVVS 296 Query 299 VAVTIRPTAASKP 311 +A++IRPTA +P Sbjct 297 LAISIRPTADQRP 309 >gi|169631374|ref|YP_001705023.1| hypothetical protein MAB_4296c [Mycobacterium abscessus ATCC 19977] gi|169243341|emb|CAM64369.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=554 Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 97/326 (30%), Positives = 152/326 (47%), Gaps = 31/326 (9%) Query 1 MDVALGVAVTDRVARLALVDSA-APGTVIDQFVLDVAEHP---VEVLTETVVGTDRSLAG 56 MDV LGV++T ARL LV+ A A G ++D + V+E E + +VGT + Sbjct 1 MDVVLGVSMTPTTARLVLVEGAGADGRIVDTDTIVVSEGEGTTSEQVLSAIVGTRDGMLD 60 Query 57 ENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAA-----HAGSAV 111 H LV+T + W D A+A EL+ +L G+ V S A AL AA + SA+ Sbjct 61 GGHNLVSTGVVWSDHAEAAELRDSLASRGIDGVEFFSALHAGGALAKAASSVTGYDKSAL 120 Query 112 LLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRS 171 L++ +TATL+VV D +A P+ + + L+ L + AP VFL+G Sbjct 121 LVIEPQTATLAVVDSADGSIVGLASEPLITGVTSGVLANLVNPLKGKENAPDGVFLLGLG 180 Query 172 AEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEA 231 + + LA+ L A + V +PD P A A A A+ P +A+T+L Sbjct 181 TD-VSDLAESLGDAIALPVNSPDQPELA----LARGAALASAQEPDF--EASTALLGQAY 233 Query 232 GQSGSEGEQLAY----SQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNA--VV 285 G G A+ ++++ + E+E+ D+ P R+ L+ A ++ Sbjct 234 SLEGPTGTGFAHPDAVTESAGEANTELREFEDFDDQ--------PAERKPFLLVGAPLLL 285 Query 286 AFAVIGFASLAVAVAVTIRPTAASKP 311 F + A LAV++ VT+R T P Sbjct 286 VFGICSIA-LAVSLTVTVRSTVDQGP 310 >gi|108797411|ref|YP_637608.1| hypothetical protein Mmcs_0431 [Mycobacterium sp. MCS] gi|119866495|ref|YP_936447.1| hypothetical protein Mkms_0441 [Mycobacterium sp. KMS] gi|108767830|gb|ABG06552.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692584|gb|ABL89657.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=603 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 93/331 (29%), Positives = 150/331 (46%), Gaps = 26/331 (7%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVA-------EHPVEVLTETVVGTDR 52 +D+ LGV++T R+ LV+ A G +D V D+ + + + V+GT Sbjct 28 VDIVLGVSMTPTTVRMVLVEGEKADGVTVDHDVFDINAVEGSATSNAADQVVAAVLGTQE 87 Query 53 SLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HA 107 S A H L + + W D A A L+ L G+ DV ++SE AA +L VG A + Sbjct 88 SAAAGGHHLRSVGVAWSDHASAAALRDTLTARGIEDVMLVSEGHAAASLAQAVGRAVGYT 147 Query 108 GSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFL 167 +A+ + + ATLSVV D T V + DA + + + A + Q P +F+ Sbjct 148 ATALFFIDRDAATLSVVQTDDGSVTKVLSRSLHSTDAMAVLTEMAAAVDAQDSPPQGMFV 207 Query 168 VGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP 227 VG + + V A R S + + P++P A A AH +T L Sbjct 208 VGSGVDVSEVKAHLGRLLS-LPINAPEEP-----ELALARGAALASAHAPDFEASTVGLA 261 Query 228 RAEAGQSG-SEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPL-----SRR-SLLI 280 ++ + G + G A A+ +L PV AA + P +R+ LL+ Sbjct 262 YSQDPEEGTTAGSSYAAFGAAATQLAPVSSAAAAPPMVFAAPEAVPTPADDENRKPFLLV 321 Query 281 GNAVVAFAVIGFASLAVAVAVTIRPTAASKP 311 G+A+ + V+G +L +++AV IRPTA +P Sbjct 322 GSALSSIFVVGVVALVISLAVNIRPTADQRP 352 >gi|126433030|ref|YP_001068721.1| hypothetical protein Mjls_0418 [Mycobacterium sp. JLS] gi|126232830|gb|ABN96230.1| hypothetical protein Mjls_0418 [Mycobacterium sp. JLS] Length=601 Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 92/331 (28%), Positives = 149/331 (46%), Gaps = 26/331 (7%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVA-------EHPVEVLTETVVGTDR 52 +D+ LGV++T R+ LV+ A G +D V D+ + + + V+GT Sbjct 28 VDIVLGVSMTPTTVRMVLVEGDKADGVTVDHDVFDINAVEGSATSNAADQVVAAVLGTQE 87 Query 53 SLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HA 107 S A H L + + W D A A L+ L G+ DV ++SE AA +L VG A + Sbjct 88 SAAAGGHHLRSVGVAWSDHASAAALRDTLTARGIEDVMLVSEGHAAASLAQAVGRAVGYT 147 Query 108 GSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFL 167 +A+ + + ATLSVV D T V + DA + + + A + Q P +F+ Sbjct 148 ATALFFIDRDAATLSVVQTDDGSVTKVLSRSLHSTDAMAVITEMAAAVDAQNSPPQGMFV 207 Query 168 VGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP 227 VG + + V A R S + + P++P A A AH +T L Sbjct 208 VGSGVDVSEVKAHLGRLLS-LPINAPEEP-----ELALARGAALASAHAPDFEASTVGLA 261 Query 228 RAEAGQSG-SEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPL-----SRR-SLLI 280 ++ + G + G A A+ +L PV A + P +R+ LL+ Sbjct 262 YSQDPEEGTTAGSSYAAFGAAATQLAPVSSAAAAPPMVFAEPEAVPTPVDDENRKPFLLV 321 Query 281 GNAVVAFAVIGFASLAVAVAVTIRPTAASKP 311 G+A+ + V+G +L +++AV IRPTA +P Sbjct 322 GSALSSIFVVGVVALVISLAVNIRPTADQRP 352 >gi|118462913|ref|YP_883951.1| hypothetical protein MAV_4826 [Mycobacterium avium 104] gi|254777263|ref|ZP_05218779.1| hypothetical protein MaviaA2_21699 [Mycobacterium avium subsp. avium ATCC 25291] gi|118164200|gb|ABK65097.1| conserved hypothetical protein [Mycobacterium avium 104] Length=490 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 104/358 (30%), Positives = 167/358 (47%), Gaps = 63/358 (17%) Query 3 VALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVAEH--------PVEVLTETVVGTDRS 53 + LGVA+T R+ LV+ +A G +D+ DV P +V++ ++GT Sbjct 4 IVLGVAMTPTKVRMVLVEGESADGVTVDEDDFDVDTRRTALPGTAPDQVIS-AILGTREG 62 Query 54 LAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAG 108 A ++L++T + W D +A L+ AL V +V ++S AA AL VG A +A Sbjct 63 AADSGYQLLSTGVTWTDHVEAAMLRDALIAYKVENVMLVSAFMAAAALTQAVGDATNYAR 122 Query 109 SAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALA------- 161 +A+L V +AT++VV D + V P+ + D +A L D A + Sbjct 123 TAMLFVEPYSATMAVVDTADGSVSEVRRRPLPEDE-----DQAVAELVDMAASAESLPTR 177 Query 162 PGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVAD 221 P + LVG S ++ L AA+++ + PD+P ALARGAA+A+ A+ L A Sbjct 178 PEGLVLVG-SGVDVPLIKPALEAATSLELSVPDEPEMALARGAALAS-----ANAPLFAS 231 Query 222 ATTSL------------PRAEAGQS-----GSEGEQLAY--SQASD---------YELLP 253 +T +L P A AGQS G + E + +QA+D Y +P Sbjct 232 STAALAYALDPGTGEVDPLALAGQSPGLLPGYQPEYHSRIAAQAADAGEGKANVAYSAVP 291 Query 254 VDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKP 311 D+ E D A + LL+ + + + +L +A+A++IRPT A +P Sbjct 292 DDDAEAKTLID--LDERARRRKSLLLVSSTLAVIFIAAVVALEIALAISIRPTVALRP 347 >gi|296167772|ref|ZP_06849967.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897072|gb|EFG76688.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=635 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 96/335 (29%), Positives = 151/335 (46%), Gaps = 33/335 (9%) Query 1 MDVALGVAVT-DRVARLALVDSAAPGTVIDQFVLDVAEHPV-------EVLTETVVGTDR 52 +D+ LGV++ + + L A G +++ V DVA + + ++GT Sbjct 6 LDIVLGVSMAPASIQMVVLEGEYADGATVEEDVFDVAAADEAATASASDQVLAAILGTQE 65 Query 53 SLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HA 107 A + + + W DQ +A L AL + +V ++S AATAL VGAA + Sbjct 66 GAADAGLEVSSIGVTWTDQLEAAALHDALTAHRIENVMLVSAFLAATALAQNVGAAMGYE 125 Query 108 GSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGA---DATSTVDTLMARLGDQALAPGD 164 +AV+ V +TATL+VV D V P+ A + + ++A L AP Sbjct 126 RTAVMFVEPDTATLAVVETSDGSIPDVYKQPLYAESYDQAAAQLGGMIAGLERLEAAPDG 185 Query 165 VFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAG-----AATMAHPALV 219 VF+VG + L L+ A+T+ V P++P ALARGAA+A+ A++ A A Sbjct 186 VFVVGSGVD-IVPLKPALQTATTLEVSVPEEPETALARGAALASANAPLFASSTAALAYA 244 Query 220 ADATT------SLPRAEAGQSGSE--GEQLAYSQASDYELLPVDEYEEHDEYGAAADRSA 271 D T SLP G E ++LAYS D + + E + S Sbjct 245 QDPGTGAVDQHSLPEYLYAAFGPEPGDDELAYSAVPDED---AESPTVVIEKLFMPEESQ 301 Query 272 PLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPT 306 R +LLIG+ + + +L +A+A+ IR T Sbjct 302 ERRRPALLIGSGLAVAGISAVLALEIALAIGIRTT 336 >gi|296167779|ref|ZP_06849968.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897065|gb|EFG76682.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=501 Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 111/366 (31%), Positives = 168/366 (46%), Gaps = 78/366 (21%) Query 3 VALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVAEH----------PVEVLTETVVGTD 51 + LGV++ R+ LV+ A G +DQ DVA P +V++ ++GT Sbjct 4 IVLGVSMAPTKVRMVLVEGECADGATVDQDQFDVAAAAYRSGGPSTAPDQVIS-AILGT- 61 Query 52 RSLAGEN-HRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA-- 105 R AGE ++L++T + W D +A L+ AL + +V ++S AA AL VG A Sbjct 62 REGAGEGGYQLLSTGVTWTDHVEAAMLRDALIAHKLENVMLVSAFMAAAALTQAVGDATG 121 Query 106 HAGSAVLLVGDETATLSVVGDPDAPPTMV-----------AVAPVAGADATSTVDTLMAR 154 +A +A+L V TATL+VV D + V AVA + D S DTL R Sbjct 122 YARAALLFVEPYTATLAVVNSADGSISEVHRRVLADDEDEAVAELV--DMVSGADTLEGR 179 Query 155 LGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMA 214 P V ++G S ++ L AA+++++ PD+P +LARGAA+A+ A Sbjct 180 -------PEGVVVIG-SGVDIPLIKPALEAATSLQLSVPDEPEMSLARGAALAS-----A 226 Query 215 HPALVADATTSL------------PRAEAGQSGSEGEQLAY-----------SQASD--- 248 + L A +T +L P A AGQS G AY + A D Sbjct 227 NAPLFASSTVALAYALDPATGEVDPLALAGQS--PGLLPAYLPEYRSVPDLSAAARDGKP 284 Query 249 ---YELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRP 305 Y +P + E G D A + LL+G+A+ + +L +A+A+ IRP Sbjct 285 NVAYSAVPDGDGEAQTAVGL--DPRAQRHKSLLLVGSALAVVFITVVVALEIALAINIRP 342 Query 306 TAASKP 311 T A +P Sbjct 343 TVALRP 348 >gi|336460291|gb|EGO39193.1| hypothetical protein MAPs_42380 [Mycobacterium avium subsp. paratuberculosis S397] Length=483 Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 103/358 (29%), Positives = 166/358 (47%), Gaps = 63/358 (17%) Query 3 VALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVAEH--------PVEVLTETVVGTDRS 53 + LGVA+T R+ LV+ +A G +D+ DV P +V++ ++GT Sbjct 4 IVLGVAMTPTKVRMVLVEGESADGVTVDEDDFDVDTRRTALPGTAPDQVIS-AILGTREG 62 Query 54 LAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAG 108 A ++L++T + W D +A L+ AL V +V ++S AA AL VG A +A Sbjct 63 AADSGYQLLSTGVTWTDHVEAAMLRDALIAHKVENVMLVSAFMAAAALTQAVGDATNYAR 122 Query 109 SAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALA------- 161 +A+L V +AT++VV D + V P+ + D +A L D A + Sbjct 123 TAMLFVEPYSATMAVVDTADGSVSEVRRRPLPEDE-----DQAVAELVDMAASAESLPTR 177 Query 162 PGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVAD 221 P + LVG S ++ L AA+++ + PD+P LARGAA+A+ A+ L A Sbjct 178 PEGLVLVG-SGVDVPLIKPALEAATSLELSVPDEPEMGLARGAALAS-----ANAPLFAS 231 Query 222 ATTSL------------PRAEAGQS-----GSEGEQLAY--SQASD---------YELLP 253 +T +L P A AGQS G + E + +QA+D Y +P Sbjct 232 STAALAYALDPGTGEVDPLALAGQSPGLLPGYQPEYHSRIAAQAADAGEGKANVAYSAVP 291 Query 254 VDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKP 311 D+ E D A + LL+ + + + +L +A+A++IRPT A +P Sbjct 292 DDDAEAKTLID--LDERARRRKSLLLVSSTLAVIFIAAVVALEIALAISIRPTVALRP 347 >gi|333988963|ref|YP_004521577.1| hypothetical protein JDM601_0323 [Mycobacterium sp. JDM601] gi|333484931|gb|AEF34323.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=483 Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 78/247 (32%), Positives = 124/247 (51%), Gaps = 16/247 (6%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVA---EHPVEVLTETVVGTDRSLAG 56 MD+ LGV+V R+ LV+ A G ++ DV + E + ++GT Sbjct 1 MDIVLGVSVAPSTVRMVLVEGEGADGVTVEHDDFDVGADTQSAPERVVSAILGTREGARE 60 Query 57 ENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAGSAV 111 ++L +T + W D A+A L+ AL V +V ++S AA AL VG+A +A +A+ Sbjct 61 GGYQLSSTGVTWSDPAEATALREALIGHKVENVMLVSAFLAAAALAQAVGSATRYARTAL 120 Query 112 LLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALA--PGDVFLVG 169 L V + ATL+VV D T V P++ D ++ + G Q L P +F+VG Sbjct 121 LFVEPDAATLAVVNSDDGEITEVHRQPLSPDDDSAVGELTELVAGAQRLESRPDGLFVVG 180 Query 170 RSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRA 229 + ++ +L AS + V P++P ALARGAA+A+ AH L A +T ++ A Sbjct 181 SGGVNVAMIKPELDKASPLPVSAPEEPDMALARGAALAS-----AHAPLFASSTRAVAWA 235 Query 230 EAGQSGS 236 + +GS Sbjct 236 QDPGTGS 242 >gi|118462565|ref|YP_883949.1| hypothetical protein MAV_4824 [Mycobacterium avium 104] gi|118163852|gb|ABK64749.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336460289|gb|EGO39191.1| hypothetical protein MAPs_42360 [Mycobacterium avium subsp. paratuberculosis S397] Length=482 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 104/358 (30%), Positives = 164/358 (46%), Gaps = 70/358 (19%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVA--EHPVEV-----LTETVVGTDR 52 MD LGV++ R+ LV+ G +D+ DVA E V + ++GT + Sbjct 1 MDTVLGVSMAPTAVRMVLVEGENGDGATVDEDNFDVATSEDAATVTASDQVLSAILGTRQ 60 Query 53 SLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVIS---EAQAATALVG--AAHA 107 A ++L +T + + D +A L+ L V +V ++S A A VG +A Sbjct 61 GAAEGGYQLASTGVTFTDPVEAAALRDKLAAHKVENVMLVSAFLAAAALAQAVGHRTNYA 120 Query 108 GSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGAD--ATSTVDTLMARLGDQALAPGDV 165 +A+L + +TATL+VV D V P+ D A + + ++++ + P V Sbjct 121 HTALLYIEPDTATLAVVDSADGSIADVRRQPLPEDDEAAVAELASMVSNAENLETRPDAV 180 Query 166 FLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTS 225 F+VG S ++ L AA+T+ + P++P ALARGAA+A+ AH L A +T + Sbjct 181 FVVG-SGIDIPLIKPALEAATTLPLTAPEEPDTALARGAALAS-----AHAPLFASSTAA 234 Query 226 LPRAEA-------------------GQSGSEGEQLAYS-------------QASDYELLP 253 L A+ +G++G LAYS QA+ EL+ Sbjct 235 LAYAQDPGTGAINPLAVAPGYFETPADAGADG--LAYSAVPDDPDEFFTGTQAAATELVD 292 Query 254 VDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKP 311 D ADRS+ L+G+AV A VIG +L V++A+ IRPTA +P Sbjct 293 ADY----------ADRSS-----FKLVGSAVAAIFVIGVVALVVSLAIAIRPTANVRP 335 >gi|41409922|ref|NP_962758.1| hypothetical protein MAP3824 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398755|gb|AAS06374.1| hypothetical protein MAP_3824 [Mycobacterium avium subsp. paratuberculosis K-10] Length=448 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 106/358 (30%), Positives = 166/358 (47%), Gaps = 70/358 (19%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVA--EHPVEV-----LTETVVGTDR 52 MD LGV++ R+ LV+ G +D+ DVA E V + ++GT + Sbjct 1 MDTVLGVSMAPTAVRMVLVEGENGDGATVDEDNFDVATSEDAATVTASDQVLSAILGTRQ 60 Query 53 SLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VG--AAHA 107 A ++L +T + + D +A L+ L V +V ++S AA AL VG +A Sbjct 61 GAAEGGYQLASTGVTFTDPVEAAALRDKLAAHKVENVMLVSAFLAAAALAQAVGHRTNYA 120 Query 108 GSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGAD--ATSTVDTLMARLGDQALAPGDV 165 +A+L + +TATL+VV D V P+ D A + + ++++ + P V Sbjct 121 HTALLYIEPDTATLAVVDSADGSIADVRRQPLPEDDEAAVAELASMVSNAENLETRPDAV 180 Query 166 FLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTS 225 F+VG S ++ L AA+T+ + P++P ALARGAA+A+ AH L A +T + Sbjct 181 FVVG-SGIDIPLIKPALEAATTLPLTAPEEPDTALARGAALAS-----AHAPLFASSTAA 234 Query 226 LPRAEA-------------------GQSGSEGEQLAYS-------------QASDYELLP 253 L A+ +G++G LAYS QA+ EL+ Sbjct 235 LAYAQDPGTGAINPLAVAPGYFETPADAGADG--LAYSAVPDDPDEFFTGTQAAATELVD 292 Query 254 VDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKP 311 D ADRS+ L+G+AV A VIG +L V++A+ IRPTA +P Sbjct 293 ADY----------ADRSS-----FKLVGSAVAAIFVIGVVALVVSLAIAIRPTANVRP 335 >gi|342859179|ref|ZP_08715833.1| hypothetical protein MCOL_09883 [Mycobacterium colombiense CECT 3035] gi|342133420|gb|EGT86623.1| hypothetical protein MCOL_09883 [Mycobacterium colombiense CECT 3035] Length=468 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 102/361 (29%), Positives = 165/361 (46%), Gaps = 69/361 (19%) Query 3 VALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVAEH--------PVEVLTETVVGTDRS 53 + LGV++T R+ LV+ +A G +D+ DV P EV++ ++GT Sbjct 4 IVLGVSMTPTKVRMVLVEGESADGVTVDEEDFDVDTQRTAVPGTAPNEVIS-AILGTREG 62 Query 54 LAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAG 108 ++L++T + W D +A L+ AL V +V ++S AA AL VG A +A Sbjct 63 ATDGGYQLLSTGVTWTDHVEAAMLRDALIAHKVENVMLVSAFMAAAALTQAVGDATNYAR 122 Query 109 SAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALA------- 161 +A+L V +ATL+VV D +V+ V D +A L D A Sbjct 123 TALLFVEPYSATLAVVDTADG-----SVSEVRRRILPDDEDQAVAELVDMASGAEGLETH 177 Query 162 PGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVAD 221 P + LVG S ++ L AA+++ + PD+P ALARGAA+A+ A+ L A Sbjct 178 PEGLVLVG-SGVDIPLIKPVLEAATSLELSVPDEPEMALARGAALAS-----ANAPLFAS 231 Query 222 ATTSL------------PRAEAGQS-----GSEGEQLAY--SQASDYELLPVDEYEEHDE 262 +T +L P AGQ G + E ++ + A+D VD+ + + Sbjct 232 STAALAYALDPGTGEVDPVVLAGQYPGLVPGYQPEYRSHIAALAAD-----VDKGKTNVA 286 Query 263 YGAAA------------DRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASK 310 Y A A D A + LL+ +++ + +L +A+A++IRPT A + Sbjct 287 YSAVADDDADAKTVIGLDERARRRKSFLLVSSSLAVIFIAAVVALEIALAISIRPTVALR 346 Query 311 P 311 P Sbjct 347 P 347 >gi|300176444|emb|CBK23755.2| unnamed protein product [Blastocystis hominis] Length=925 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/75 (64%), Positives = 51/75 (68%), Gaps = 3/75 (4%) Query 459 PVTTPPTTVAPTTVAPTTVAPTTVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQ 518 P T PTTVAPTTVAPTT+APTTVAPTTVAP T PTTVAP T PT PT Sbjct 384 PTTAAPTTVAPTTVAPTTIAPTTVAPTTVAPTTVAPTTVAPTTIAPTTVAPTTVAPT--- 440 Query 519 TVAPQTVAPAPQPPS 533 TVAP TVAP + P+ Sbjct 441 TVAPTTVAPTTEAPT 455 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/111 (56%), Positives = 66/111 (60%), Gaps = 7/111 (6%) Query 427 PPTTPPTT--PVTTPPTT-PPTT--PVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPTT 481 P T PTT P T PTT PTT P T PTT P T PTTVAPTT+APTTVAPTT Sbjct 379 PTTVAPTTAAPTTVAPTTVAPTTIAPTTVAPTT--VAPTTVAPTTVAPTTIAPTTVAPTT 436 Query 482 VAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPP 532 VAPTTVAP T PTT AP T PT +PT + V P T AP + P Sbjct 437 VAPTTVAPTTVAPTTEAPTTVAPTTVAPTTVVPTTEAPVVPTTEAPTTEAP 487 >gi|296167780|ref|ZP_06849969.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897066|gb|EFG76683.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=409 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 85/261 (33%), Positives = 130/261 (50%), Gaps = 21/261 (8%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVAEHPVEVLTETVV-----GTDRSL 54 MDV LGV++ R+ LV+ AA G +DQ D+ P V GT S Sbjct 21 MDVVLGVSMAPEAVRMVLVEGEAASGVTVDQDGFDLTNQPTAAAAADRVVAAIVGTRESA 80 Query 55 AGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAH-----AGS 109 A +RL ++ + W D A+A L++AL + +V ++S AA AL AA A + Sbjct 81 AQGGYRLKSSGVTWTDAAEAAALRNALAARNIENVMLVSAVMAAAALAQAAGSATNCART 140 Query 110 AVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALA--PGDVFL 167 A+LLV TAT++VV D V P+ +D + G +++ P +FL Sbjct 141 ALLLVEPTTATMAVVDTADGSVADVRRHPLPSSDEAALAKLTAMVSGAESMRARPDGLFL 200 Query 168 VGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP 227 VG + + L AA+++ V TP++P ALARGA++AA A + P+ +A +P Sbjct 201 VGSDVD-IPFIKPALEAATSLSVTTPEEPEMALARGASLAAANARLGAPSTIA-----MP 254 Query 228 RAEAGQSGSEGEQLAYSQASD 248 AG ++G +LAYS +D Sbjct 255 L--AGDPSADGRELAYSAEAD 273 >gi|183980627|ref|YP_001848918.1| hypothetical protein MMAR_0601 [Mycobacterium marinum M] gi|183173953|gb|ACC39063.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=561 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 98/331 (30%), Positives = 153/331 (47%), Gaps = 41/331 (12%) Query 1 MDVALGVAVTDRVARLALVDSA-APGTVIDQFVLDVAEHPV-----EVLTETVVGTDRSL 54 +DV LGV++ R+ALV+ G ++++ D+ +PV + + ++GT Sbjct 18 LDVVLGVSMAAADVRMALVEGEDGDGVIVEEDSFDLDRNPVTSSASDQVVAAILGTREGA 77 Query 55 AGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HAGS 109 A RL + + W D +A L+ AL V +V ++S AA AL VG A +A + Sbjct 78 ADAGLRLSSIGVTWTDPVQAAALRDALAWHKVENVMLVSGFLAAAALGQAVGGALSYART 137 Query 110 AVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQAL--APGDVFL 167 AVL + +TATL+VV D + V +A D + + + ++L P V++ Sbjct 138 AVLFIEPDTATLAVVDTADGSVSEVCQQLLAEDDDAAVAEVVAMVAAAESLPARPDGVYV 197 Query 168 VGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLP 227 VG + ++ L AA+++ V ++ ALARGAA+A G A + A A Sbjct 198 VGTGVD-VAMIKPALDAATSLTVSVSEEQEMALARGAALACGNAPLFAATTAALAYA--- 253 Query 228 RAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRS-LLIGNAVVA 286 Q ++ + L S D EL P E P RRS LLIG+ + Sbjct 254 -----QDLNDPDPLGESDLGD-ELSPDQE---------------PAGRRSGLLIGSGLAV 292 Query 287 FAVIGFASLAVAVAVTIRPTAAS--KPVEGH 315 A +L VA+A+ IRPT A +P E H Sbjct 293 VATAAVVALEVALAIDIRPTVALQPRPNENH 323 >gi|254821494|ref|ZP_05226495.1| hypothetical protein MintA_16290 [Mycobacterium intracellulare ATCC 13950] Length=494 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 96/343 (28%), Positives = 150/343 (44%), Gaps = 49/343 (14%) Query 1 MDVALGVAVTD-RVARLALVDSAAPGTVIDQFVLDV--AEHPVEV-----LTETVVGTDR 52 MD+ LGV++ + + L A G +++ +DV A+ V + ++GT Sbjct 1 MDIVLGVSMAPSSIQMVVLQGEYADGATVEEDAIDVTGADDAATVSASDRVISAILGTRE 60 Query 53 SLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATAL---VGAA--HA 107 A L + + W DQ +A L+ AL + +V ++S AA AL VG A + Sbjct 61 GAADAGLELSSIGVTWTDQFEAAALRDALTAHRLDNVMLVSAFLAAAALAQNVGGAMGYE 120 Query 108 GSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGAD---ATSTVDTLMARLGDQALAPGD 164 +AVLLV +TATL+VV D V + A + ++A L P Sbjct 121 RTAVLLVEPDTATLAVVETSDGSIPDVYKQQIRAESYGAAAEQLSGMVAGLEKLEYRPDG 180 Query 165 VFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATT 224 +F+VG S L L+ + + V ++P ALARGAA+A+ A+ L A +T Sbjct 181 LFVVG-SGVDVGPLKPALQTTTALDVSVAEEPETALARGAALAS-----ANAPLFASSTA 234 Query 225 SLPRAEAGQSGSEGEQLAYSQASDYELLPV----DEYEEHDEYGAAADRSA--------- 271 +L A+ +G A Q S E L V D+ ++ Y A AD A Sbjct 235 ALAYAQDPGTG------AVDQHSLPEYLYVPFGPDDGDDELAYSAVADEDADSPTVVIER 288 Query 272 --------PLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPT 306 P R +LLIG+ + + +L +A+A+ IR T Sbjct 289 LFLPEESQPQRRPALLIGSGLAVAGISAVLALEIALAIGIRTT 331 >gi|342859177|ref|ZP_08715831.1| hypothetical protein MCOL_09873 [Mycobacterium colombiense CECT 3035] gi|342133418|gb|EGT86621.1| hypothetical protein MCOL_09873 [Mycobacterium colombiense CECT 3035] Length=467 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 89/302 (30%), Positives = 138/302 (46%), Gaps = 58/302 (19%) Query 47 VVGTDRSLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVIS---EAQAATALVG 103 ++GT + A ++L +T + + D +A L+ L V +V ++S A A VG Sbjct 40 ILGTRQGAAEGGYQLASTGVTFTDPVEAAALRDKLAAHKVENVMLVSAFLAAAALAQAVG 99 Query 104 --AAHAGSAVLLVGDETATLSVVGDPDAPPTMV-----------AVAPVAGADATSTVDT 150 +A +A+L + +TATL+VV D V AVA +A S+ + Sbjct 100 HQTNYAQTALLYIEPDTATLAVVDSADGSIADVQRQVLPDDDEAAVAQLAA--MVSSAEN 157 Query 151 LMARLGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGA 210 L R P VF+VG S ++ L AA+T+ + P++P ALARGAA+A+ Sbjct 158 LQTR-------PDAVFVVG-SGIDIPLIKPALEAATTLPLTAPEEPDTALARGAALAS-- 207 Query 211 ATMAHPALVADATTSLPRAEA-------------------GQSGSEGEQLAYSQASDYEL 251 AH L + +T +L A+ ++G++G LAYS D Sbjct 208 ---AHAPLFSSSTAALAYAQDPGTGAINPLAVAPGYFEVPAEAGADG--LAYSAVPD--- 259 Query 252 LPVDEYEEHDEYGAAADRSAPLSRRS--LLIGNAVVAFAVIGFASLAVAVAVTIRPTAAS 309 DE+ + A A A RS L+G+ V VIG +L V++A+ IRPTA Sbjct 260 -DPDEFFTGSQTAATALVDADYHERSSFRLVGSVVAGIFVIGVVALVVSLAIAIRPTANV 318 Query 310 KP 311 +P Sbjct 319 RP 320 >gi|118463376|ref|YP_883950.1| hypothetical protein MAV_4825 [Mycobacterium avium 104] gi|118164663|gb|ABK65560.1| conserved hypothetical protein [Mycobacterium avium 104] Length=372 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 102/338 (31%), Positives = 153/338 (46%), Gaps = 41/338 (12%) Query 1 MDVALGVAVTDRVARLALVD-SAAPGTVIDQFVLDVAEHPVEVLTET-----VVGTDRSL 54 MDV LGV++ R+ LV+ +A G +DQ DV ++ T S Sbjct 1 MDVVLGVSMAPETVRMVLVEGESAGGLTVDQDGFDVTADATPAAAAHHVVAAILETRDSA 60 Query 55 AGENHRLVATRLCWPDQAKADELQHALQDSGVHDV---AVISEAQAATALVGAA--HAGS 109 +RL ++ + W D KA L+ AL + +V + + A A +G+A A + Sbjct 61 TQGGYRLKSSGVSWTDPVKAAALRDALAARKIENVMLVSAVMAAAALAQAMGSATNWART 120 Query 110 AVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARL-----GDQALA--P 162 A+LLV +ATL+VV + T V P+ G D D +A+L G +++ P Sbjct 121 ALLLVEPTSATLAVVDTRNGTVTDVHRHPLPGHD-----DAALAKLTAMVSGAESMRSRP 175 Query 163 GDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADA 222 +FLVG + + L AA+++ V TP++P ALARGA++AA A + P V A Sbjct 176 DGLFLVGSDVD-IPAIKPTLEAATSLSVTTPEEPEMALARGASLAAANARLGAPRTVEMA 234 Query 223 TTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGN 282 +T L +E LAYS + HD+ + R S +S+ Sbjct 235 STHLSSTATAPPAAE---LAYSA------------DTHDDPASEPTREGR-SPKSVATIA 278 Query 283 AVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQP 320 AV V G +LA A+A IRP A +P G Q P Sbjct 279 AVAVIFVGGIVALAWALAF-IRPHADKRPEVGTQVVAP 315 Lambda K H 0.311 0.128 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1213666046034 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40